RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9869
(111 letters)
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 56
Score = 77.9 bits (192), Expect = 2e-21
Identities = 50/55 (90%), Positives = 51/55 (92%)
Query: 26 RQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 80
RQTYTRYQTLELEKEFH N YLTRRRRIE+AHAL LTERQIKIWFQNRRMK KKE
Sbjct: 1 RQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 55
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 77
Score = 77.9 bits (192), Expect = 4e-21
Identities = 40/59 (67%), Positives = 46/59 (77%)
Query: 22 RRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 80
R+ R YT++QTLELEKEF N YLTR RR E+A L LTERQ+KIWFQNRRMK+KK
Sbjct: 13 TRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKI 71
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 74.1 bits (182), Expect = 7e-20
Identities = 26/57 (45%), Positives = 38/57 (66%)
Query: 23 RRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79
+ G+ ++ QT+ELEK+F T YL+ R +A L L+ERQ+K WFQNRR K ++
Sbjct: 1 KGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRR 57
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 68
Score = 73.7 bits (181), Expect = 1e-19
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 23 RRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 80
+R R ++T+ Q LEKEF HY R +A + L E +I++WF NRR K ++E
Sbjct: 2 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRRE 59
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 74.3 bits (182), Expect = 1e-19
Identities = 34/59 (57%), Positives = 39/59 (66%)
Query: 22 RRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 80
R +T Q ELEKEFH N YL+R RR+E+A L L E Q+KIWFQNRRMK KK
Sbjct: 27 PSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKR 85
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 58
Score = 73.0 bits (179), Expect = 2e-19
Identities = 27/57 (47%), Positives = 41/57 (71%)
Query: 23 RRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79
R+ R Y++ Q ELE+E+ N ++T+ +R +++ A L+ERQI IWFQNRR+K KK
Sbjct: 2 RKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKK 58
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 53
Score = 68.0 bits (166), Expect = 2e-17
Identities = 26/53 (49%), Positives = 34/53 (64%)
Query: 24 RGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMK 76
R R ++ Q L++EF+ N YLT RRR +++ L L E QIKIWFQN R K
Sbjct: 1 RPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQNARAK 53
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 57
Score = 67.6 bits (165), Expect = 3e-17
Identities = 30/57 (52%), Positives = 39/57 (68%)
Query: 24 RGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 80
R R +TR Q LEKEF+ +Y++R RR E+A L L E IK+WFQNRRMK K++
Sbjct: 1 RYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 57
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 65
Score = 67.6 bits (165), Expect = 3e-17
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 22 RRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEI 81
+RR R T++ Q ELE+ F Y R E+A LTE +I++WFQNRR +L+K+
Sbjct: 2 QRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQH 61
Query: 82 QAI 84
++
Sbjct: 62 TSV 64
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 67
Score = 67.3 bits (164), Expect = 4e-17
Identities = 26/64 (40%), Positives = 36/64 (56%)
Query: 23 RRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQ 82
RR R T+T Q ELE+ F YLT R +++ L L Q+KIWF+NRR + K +
Sbjct: 2 RRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSD 61
Query: 83 AIKE 86
K+
Sbjct: 62 QHKD 65
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 58
Score = 66.9 bits (163), Expect = 6e-17
Identities = 27/57 (47%), Positives = 36/57 (63%)
Query: 23 RRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79
R+ R +T Q L LE++F YL+ R E + +L LTE Q+KIWFQNRR K K+
Sbjct: 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 66
Score = 66.8 bits (163), Expect = 8e-17
Identities = 17/64 (26%), Positives = 26/64 (40%)
Query: 22 RRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEI 81
R R Q L + N + ++ L+ R I++WFQN+R K KK
Sbjct: 3 TTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62
Query: 82 QAIK 85
+K
Sbjct: 63 IMMK 66
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 77
Score = 66.2 bits (161), Expect = 1e-16
Identities = 26/65 (40%), Positives = 37/65 (56%)
Query: 16 EGANGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRM 75
+G +R+ R +T+ QT ELE+ F YL+ R +A + LT Q+KIWFQN R
Sbjct: 3 DGLPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRY 62
Query: 76 KLKKE 80
K K+
Sbjct: 63 KTKRA 67
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 50
Score = 64.9 bits (158), Expect = 2e-16
Identities = 12/49 (24%), Positives = 20/49 (40%)
Query: 26 RQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRR 74
R +T Q L F N ++ +I ++ L L + +F N R
Sbjct: 2 RLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNAR 50
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 62
Score = 63.6 bits (155), Expect = 1e-15
Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
Query: 23 RRGRQTYTRYQTLELEKEF---HTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79
+ R ++ T + + Y T + ++A LT Q+ WF N R ++ +
Sbjct: 3 KNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQ 62
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 68
Score = 63.4 bits (154), Expect = 2e-15
Identities = 24/60 (40%), Positives = 37/60 (61%)
Query: 21 LRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 80
+RR+ R +++ Q ELE+ F YL+ R +A + LT Q+KIWFQN R K+K++
Sbjct: 1 MRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQ 60
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 60
Score = 62.7 bits (152), Expect = 2e-15
Identities = 23/58 (39%), Positives = 32/58 (55%)
Query: 23 RRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 80
RR R +T Q +LE F N Y R E+A LTE ++++WF+NRR K +K
Sbjct: 2 RRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKR 59
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6,
LASS6 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 52
Score = 62.0 bits (151), Expect = 4e-15
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 30 TRYQTLELEKEF-HTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79
T LEK F + +R ++ L R I+ WF+ RR + K
Sbjct: 1 TAQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 51
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 53
Score = 61.1 bits (148), Expect = 1e-14
Identities = 14/53 (26%), Positives = 27/53 (50%)
Query: 26 RQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLK 78
+ + + LE+ F L + + E+A +T Q+++WF N+RM+ K
Sbjct: 1 KSSISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 53
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1
(Flj21616) {Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 60.5 bits (146), Expect = 3e-14
Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 15/73 (20%)
Query: 23 RRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMA---------------HALCLTERQIK 67
R R T+ + +E F+ N Y +R E+A +T ++
Sbjct: 1 RGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVY 60
Query: 68 IWFQNRRMKLKKE 80
WF NRR ++K+
Sbjct: 61 NWFANRRKEIKRR 73
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 71
Score = 59.7 bits (144), Expect = 5e-14
Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 1/60 (1%)
Query: 22 RRRGRQTYTRYQTLELEKEFH-TNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 80
R R + L+ H Y + ++ L L + I +FQN+R +K
Sbjct: 7 GPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKHS 66
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 60
Score = 59.0 bits (143), Expect = 6e-14
Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 5/60 (8%)
Query: 23 RRGRQTYTRYQTLELEKEFH---TNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79
R R +T+ LE F N YL + + L+ QIK W NRR K K
Sbjct: 1 RGHR--FTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 72
Score = 58.8 bits (142), Expect = 1e-13
Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 23 RRGRQTYTRYQTLELEKEFH-TNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 80
G T T Q LE F+ N + +A LTE Q + WF+ R + ++
Sbjct: 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRS 60
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 58
Score = 58.0 bits (140), Expect = 2e-13
Identities = 15/56 (26%), Positives = 28/56 (50%)
Query: 24 RGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79
+ R T + LE+ F + + + + MA L L + +++WF NRR + K+
Sbjct: 1 KRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKR 56
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5,
LASS5 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 59
Score = 57.9 bits (140), Expect = 2e-13
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 20 GLRRRGRQTYTRYQTLELEKEF-HTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLK 78
G++ LEK F Y +R ++ L + R+I+ WF++RR + K
Sbjct: 1 GIKDSPVNKVE--PNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDK 58
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 80
Score = 58.5 bits (141), Expect = 2e-13
Identities = 9/70 (12%), Positives = 19/70 (27%), Gaps = 4/70 (5%)
Query: 15 DEGANGLRRRGRQTYTRYQTLELEKEFH----TNHYLTRRRRIEMAHALCLTERQIKIWF 70
+ G +R R +T Q ++ + + + +KIW
Sbjct: 10 PSSSGGTTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWM 69
Query: 71 QNRRMKLKKE 80
N +
Sbjct: 70 HNNKNSGPSS 79
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 57.3 bits (138), Expect = 5e-13
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 23 RRGRQTYTRYQTLELEK---EFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79
RR R+ + + T L + +N Y + + E+A +T Q+ WF N+R++ KK
Sbjct: 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 61
Query: 80 EIQAIKE 86
I +E
Sbjct: 62 NIGKFQE 68
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 67
Score = 55.8 bits (134), Expect = 1e-12
Identities = 16/58 (27%), Positives = 28/58 (48%)
Query: 22 RRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79
R+R R + LE F + ++ +A+ L L + +++WF NRR K K+
Sbjct: 8 RKRKRTSIENRVRWSLETMFLKCPKPSLQQITHIANQLGLEKDVVRVWFCNRRQKGKR 65
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1,
ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 55.9 bits (134), Expect = 2e-12
Identities = 12/63 (19%), Positives = 24/63 (38%)
Query: 23 RRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQ 82
+ + T Q L+ F + LT + LT R+I WF ++ + +
Sbjct: 5 PQKFKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEE 64
Query: 83 AIK 85
++
Sbjct: 65 KME 67
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 49.6 bits (118), Expect = 3e-10
Identities = 17/54 (31%), Positives = 25/54 (46%)
Query: 26 RQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79
R + + LEK F N T +A L + + I++WF NRR K K+
Sbjct: 2 RTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKR 55
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez
{Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 48.6 bits (115), Expect = 1e-09
Identities = 13/60 (21%), Positives = 21/60 (35%)
Query: 20 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79
G + T+ Q L+ F + R ++ L +I WF + R LK
Sbjct: 1 GSSGSSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKH 60
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1)
{Rat (Rattus rattus) [TaxId: 10117]}
Length = 78
Score = 45.5 bits (107), Expect = 2e-08
Identities = 10/78 (12%), Positives = 21/78 (26%), Gaps = 21/78 (26%)
Query: 26 RQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHAL---------------------CLTER 64
R + L + + ++ R + +TE
Sbjct: 1 RFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEV 60
Query: 65 QIKIWFQNRRMKLKKEIQ 82
++ WF NRR + +
Sbjct: 61 RVYNWFANRRKEEAFRHK 78
>d2ddha3 e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II,
domains 1 and 2 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 267
Score = 27.1 bits (59), Expect = 0.49
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
Query: 3 ATFSSDLMTNLEDEGANGLRRRGRQTYTRYQTLELEKEFHT--NHYLTRRRRIEMAHALC 60
ATF+ +L+T++ D RRR + + +F ++LTR +R E+A
Sbjct: 12 ATFNPELITHILDGSPENTRRRRE----IENLILNDPDFQHEDYNFLTRSQRYEVAVKKS 67
Query: 61 L 61
Sbjct: 68 A 68
>d1w07a3 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domains 1
and 2 {Thale cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 271
Score = 26.6 bits (58), Expect = 0.61
Identities = 8/61 (13%), Positives = 17/61 (27%), Gaps = 6/61 (9%)
Query: 3 ATFSSDLMTNLEDEGANGLRRRGRQTYTRYQTLELEKEFH--TNHYLTRRRRIEMAHALC 60
A F + M + + R + + + F L+R+ + C
Sbjct: 13 AEFDVEDMKIVWAGSRHAFEVSDR----IARLVASDPVFEKSNRARLSRKELFKSTLRKC 68
Query: 61 L 61
Sbjct: 69 A 69
>d1pvga2 d.122.1.2 (A:7-245) DNA topoisomerase II {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 239
Score = 23.7 bits (50), Expect = 6.3
Identities = 8/41 (19%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 38 EKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLK 78
KE + RRR+ + + + R I ++ + +K++
Sbjct: 202 MKELDNDILGVMRRRV---YDINGSVRDINVYLNGKSLKIR 239
>d1c3ca_ a.127.1.1 (A:) Adenylosuccinate lyase {Thermotoga
maritima [TaxId: 2336]}
Length = 429
Score = 23.7 bits (50), Expect = 7.2
Identities = 6/33 (18%), Positives = 11/33 (33%)
Query: 31 RYQTLELEKEFHTNHYLTRRRRIEMAHALCLTE 63
RY ++ + R +E+A E
Sbjct: 3 RYSLSPMKDLWTEEAKYRRWLEVELAVTRAYEE 35
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.127 0.353
Gapped
Lambda K H
0.267 0.0654 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 392,514
Number of extensions: 17332
Number of successful extensions: 152
Number of sequences better than 10.0: 1
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 56
Length of query: 111
Length of database: 2,407,596
Length adjustment: 70
Effective length of query: 41
Effective length of database: 1,446,496
Effective search space: 59306336
Effective search space used: 59306336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.0 bits)