BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy987
(114 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q80WE1|FMR1_RAT Fragile X mental retardation protein 1 homolog OS=Rattus norvegicus
GN=Fmr1 PE=2 SV=2
Length = 593
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 15 YYKVIVKMIKGDFHVVEYLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHKFDIEVPLD 72
++ V+MIKG+F+V+EY C +T+ EIV ER+R N N P TFHK +EVP D
Sbjct: 79 WWLAKVRMIKGEFYVIEYAACDATYNEIVTIERLRSVNPNKPATKDTFHKIKLEVPED 136
Score = 35.8 bits (81), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 56/143 (39%), Gaps = 38/143 (26%)
Query: 1 MDELEVEVCGENGAYYKVIVKMIKGDFHVVEYLGC-----QSTFTEI-VPPERMRQKNTN 54
M+EL VEV G NGA+YK VK + D V + Q F ++ PP K+ N
Sbjct: 1 MEELVVEVRGSNGAFYKAFVKDVHEDSITVAFENNWQPERQIPFHDVRFPPPVGYNKDIN 60
Query: 55 PPIDAKTFHKFDIEVPLDQSDWLISK-----------------------------NGKNT 85
+ + + + + + P W ++K N
Sbjct: 61 ESDEVEVYSRANEKEPC---CWWLAKVRMIKGEFYVIEYAACDATYNEIVTIERLRSVNP 117
Query: 86 NPPIDAKTFHKFDIEVPLDVQEL 108
N P TFHK +EVP D++++
Sbjct: 118 NKPATKDTFHKIKLEVPEDLRQM 140
>sp|P35922|FMR1_MOUSE Fragile X mental retardation protein 1 homolog OS=Mus musculus
GN=Fmr1 PE=1 SV=1
Length = 614
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 15 YYKVIVKMIKGDFHVVEYLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHKFDIEVPLD 72
++ V+MIKG+F+V+EY C +T+ EIV ER+R N N P TFHK +EVP D
Sbjct: 79 WWLAKVRMIKGEFYVIEYAACDATYNEIVTIERLRSVNPNKPATKDTFHKIKLEVPED 136
Score = 35.8 bits (81), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 56/143 (39%), Gaps = 38/143 (26%)
Query: 1 MDELEVEVCGENGAYYKVIVKMIKGDFHVVEYLGC-----QSTFTEI-VPPERMRQKNTN 54
M+EL VEV G NGA+YK VK + D V + Q F ++ PP K+ N
Sbjct: 1 MEELVVEVRGSNGAFYKAFVKDVHEDSITVAFENNWQPERQIPFHDVRFPPPVGYNKDIN 60
Query: 55 PPIDAKTFHKFDIEVPLDQSDWLISK-----------------------------NGKNT 85
+ + + + + + P W ++K N
Sbjct: 61 ESDEVEVYSRANEKEPC---CWWLAKVRMIKGEFYVIEYAACDATYNEIVTIERLRSVNP 117
Query: 86 NPPIDAKTFHKFDIEVPLDVQEL 108
N P TFHK +EVP D++++
Sbjct: 118 NKPATKDTFHKIKLEVPEDLRQM 140
>sp|Q06787|FMR1_HUMAN Fragile X mental retardation protein 1 OS=Homo sapiens GN=FMR1 PE=1
SV=1
Length = 632
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 38/58 (65%)
Query: 15 YYKVIVKMIKGDFHVVEYLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHKFDIEVPLD 72
++ V+MIKG+F+V+EY C +T+ EIV ER+R N N P TFHK ++VP D
Sbjct: 79 WWLAKVRMIKGEFYVIEYAACDATYNEIVTIERLRSVNPNKPATKDTFHKIKLDVPED 136
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 56/143 (39%), Gaps = 38/143 (26%)
Query: 1 MDELEVEVCGENGAYYKVIVKMIKGDFHVVEYLGC-----QSTFTEI-VPPERMRQKNTN 54
M+EL VEV G NGA+YK VK + D V + Q F ++ PP K+ N
Sbjct: 1 MEELVVEVRGSNGAFYKAFVKDVHEDSITVAFENNWQPDRQIPFHDVRFPPPVGYNKDIN 60
Query: 55 PPIDAKTFHKFDIEVPLDQSDWLISK-----------------------------NGKNT 85
+ + + + + + P W ++K N
Sbjct: 61 ESDEVEVYSRANEKEPC---CWWLAKVRMIKGEFYVIEYAACDATYNEIVTIERLRSVNP 117
Query: 86 NPPIDAKTFHKFDIEVPLDVQEL 108
N P TFHK ++VP D++++
Sbjct: 118 NKPATKDTFHKIKLDVPEDLRQM 140
>sp|Q5R9B4|FMR1_PONAB Fragile X mental retardation protein 1 homolog OS=Pongo abelii
GN=FMR1 PE=2 SV=1
Length = 594
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 38/58 (65%)
Query: 15 YYKVIVKMIKGDFHVVEYLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHKFDIEVPLD 72
++ V+MIKG+F+V+EY C +T+ EIV ER+R N N P TFHK ++VP D
Sbjct: 79 WWLAKVRMIKGEFYVIEYAACDATYNEIVTIERLRSVNPNKPATKDTFHKIKLDVPED 136
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 56/143 (39%), Gaps = 38/143 (26%)
Query: 1 MDELEVEVCGENGAYYKVIVKMIKGDFHVVEYLGC-----QSTFTEI-VPPERMRQKNTN 54
M+EL VEV G NGA+YK VK + D V + Q F ++ PP K+ N
Sbjct: 1 MEELVVEVRGSNGAFYKAFVKDVHEDSITVAFENNWQPDRQIPFHDVRFPPPVGYNKDIN 60
Query: 55 PPIDAKTFHKFDIEVPLDQSDWLISK-----------------------------NGKNT 85
+ + + + + + P W ++K N
Sbjct: 61 ESDEVEVYSRANEKEPC---CWWLAKVRMIKGEFYVIEYAACDATYNEIVTIERLRSVNP 117
Query: 86 NPPIDAKTFHKFDIEVPLDVQEL 108
N P TFHK ++VP D++++
Sbjct: 118 NKPATKDTFHKIKLDVPEDLRQM 140
>sp|P51113|FMR1A_XENLA Fragile X mental retardation protein 1 homolog A OS=Xenopus laevis
GN=fmr1-a PE=1 SV=1
Length = 564
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/53 (49%), Positives = 36/53 (67%)
Query: 20 VKMIKGDFHVVEYLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHKFDIEVPLD 72
V+MIKG+F+V+EY C +T+ EIV ER+R N N P +FHK ++VP D
Sbjct: 84 VRMIKGEFYVIEYAACDATYNEIVTIERLRSVNPNKPATKSSFHKVKLDVPED 136
Score = 34.7 bits (78), Expect = 0.20, Method: Composition-based stats.
Identities = 33/143 (23%), Positives = 56/143 (39%), Gaps = 38/143 (26%)
Query: 1 MDELEVEVCGENGAYYKVIVKMIKGDFHVVEYLGC-----QSTFTEI-VPPERMRQKNTN 54
M+EL VEV G NGA+YK +K + D V + Q F ++ PP K+ N
Sbjct: 1 MEELAVEVRGSNGAFYKAFMKDVHEDSITVTFENNWQQERQIPFHDVRFPPPSGYNKDIN 60
Query: 55 PPIDAKTFHKFDIEVPLDQSDWLISK-----------------------------NGKNT 85
+ + + + + + P W ++K N
Sbjct: 61 ERDEVEVYSRANEKEP---CCWWLAKVRMIKGEFYVIEYAACDATYNEIVTIERLRSVNP 117
Query: 86 NPPIDAKTFHKFDIEVPLDVQEL 108
N P +FHK ++VP D++++
Sbjct: 118 NKPATKSSFHKVKLDVPEDLRQM 140
>sp|Q9NFU0|FMR1_DROME Fragile X mental retardation syndrome-related protein 1
OS=Drosophila melanogaster GN=Fmr1 PE=1 SV=1
Length = 684
Score = 60.8 bits (146), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/64 (43%), Positives = 43/64 (67%), Gaps = 4/64 (6%)
Query: 7 EVCGENGAYYKVIVKMIKGDFHVVEYLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHKFD 66
E CG ++ I+KM K + + V Y+G ++++TEI R+R KN+NPPI AKTF++F
Sbjct: 77 ETCG----WWVGIIKMRKAEIYAVAYIGFETSYTEICELGRLRAKNSNPPITAKTFYQFT 132
Query: 67 IEVP 70
+ VP
Sbjct: 133 LPVP 136
>sp|Q6GLC9|FMR1_XENTR Fragile X mental retardation protein 1 homolog OS=Xenopus
tropicalis GN=fmr1 PE=2 SV=1
Length = 590
Score = 60.8 bits (146), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/53 (49%), Positives = 36/53 (67%)
Query: 20 VKMIKGDFHVVEYLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHKFDIEVPLD 72
V+MIKG+F+V+EY C +T+ EIV ER+R N N P +FHK ++VP D
Sbjct: 84 VRMIKGEFYVIEYAACDATYNEIVTIERLRSVNPNKPATKNSFHKVKLDVPED 136
Score = 35.8 bits (81), Expect = 0.074, Method: Composition-based stats.
Identities = 34/143 (23%), Positives = 56/143 (39%), Gaps = 38/143 (26%)
Query: 1 MDELEVEVCGENGAYYKVIVKMIKGDFHVVEYLGC-----QSTFTEI-VPPERMRQKNTN 54
M+EL VEV G NGA+YK VK + D V + Q F ++ PP K+ N
Sbjct: 1 MEELAVEVRGSNGAFYKAFVKDVHEDSITVTFENNWQQERQIPFHDVRFPPPSGYNKDIN 60
Query: 55 PPIDAKTFHKFDIEVPLDQSDWLISK-----------------------------NGKNT 85
+ + + + + + P W ++K N
Sbjct: 61 ESDEVEVYSRANEKEP---CCWWLAKVRMIKGEFYVIEYAACDATYNEIVTIERLRSVNP 117
Query: 86 NPPIDAKTFHKFDIEVPLDVQEL 108
N P +FHK ++VP D++++
Sbjct: 118 NKPATKNSFHKVKLDVPEDLRQM 140
>sp|P51114|FXR1_HUMAN Fragile X mental retardation syndrome-related protein 1 OS=Homo
sapiens GN=FXR1 PE=1 SV=3
Length = 621
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 11/88 (12%)
Query: 2 DELEV-------EVCGENGAYYKVIVKMIKGDFHVVEYLGCQSTFTEIVPPERMRQKNTN 54
DE+EV E CG ++ V+M+KG+F+V+EY C +T+ EIV ER+R N N
Sbjct: 63 DEVEVYSRANDQEPCG----WWLAKVRMMKGEFYVIEYAACDATYNEIVTFERLRPVNQN 118
Query: 55 PPIDAKTFHKFDIEVPLDQSDWLISKNG 82
+ TF K ++VP D + ++N
Sbjct: 119 KTVKKNTFFKCTVDVPEDLREACANENA 146
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 1 MDELEVEVCGENGAYYKVIVKMIKGDFHVV 30
M EL VEV G NGA+YK +K + D V
Sbjct: 1 MAELTVEVRGSNGAFYKGFIKDVHEDSLTV 30
>sp|Q2TBT7|FXR1_BOVIN Fragile X mental retardation syndrome-related protein 1 OS=Bos
taurus GN=FXR1 PE=2 SV=1
Length = 621
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 11/88 (12%)
Query: 2 DELEV-------EVCGENGAYYKVIVKMIKGDFHVVEYLGCQSTFTEIVPPERMRQKNTN 54
DE+EV E CG ++ V+M+KG+F+V+EY C +T+ EIV ER+R N N
Sbjct: 63 DEVEVYSRANDQEPCG----WWLAKVRMMKGEFYVIEYAACDATYNEIVTFERLRPVNQN 118
Query: 55 PPIDAKTFHKFDIEVPLDQSDWLISKNG 82
+ TF K ++VP D + ++N
Sbjct: 119 KTVKKNTFFKCTVDVPEDLREACANENA 146
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 1 MDELEVEVCGENGAYYKVIVKMIKGDFHVV 30
M EL VEV G NGA+YK +K + D V
Sbjct: 1 MAELTVEVRGSNGAFYKGFIKDVHEDSLTV 30
>sp|Q5XI81|FXR1_RAT Fragile X mental retardation syndrome-related protein 1 OS=Rattus
norvegicus GN=Fxr1 PE=2 SV=1
Length = 568
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 11/88 (12%)
Query: 2 DELEV-------EVCGENGAYYKVIVKMIKGDFHVVEYLGCQSTFTEIVPPERMRQKNTN 54
DE+EV E CG ++ V+M+KG+F+V+EY C +T+ EIV ER+R N N
Sbjct: 63 DEVEVYSRANDQEPCG----WWLAKVRMMKGEFYVIEYAACDATYNEIVTFERLRPVNQN 118
Query: 55 PPIDAKTFHKFDIEVPLDQSDWLISKNG 82
+ TF K ++VP D + ++N
Sbjct: 119 KTVKKNTFFKCTVDVPEDLREACANENA 146
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 1 MDELEVEVCGENGAYYKVIVKMIKGD 26
M EL VEV G NGA+YKV +K + D
Sbjct: 1 MAELTVEVRGSNGAFYKVFIKDVHED 26
>sp|O70523|FXR1_CRIGR Fragile X mental retardation syndrome-related protein 1
OS=Cricetulus griseus GN=FXR1 PE=2 SV=1
Length = 621
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 11/88 (12%)
Query: 2 DELEV-------EVCGENGAYYKVIVKMIKGDFHVVEYLGCQSTFTEIVPPERMRQKNTN 54
DE+EV E CG ++ V+M+KG+F+V+EY C +T+ EIV ER+R N N
Sbjct: 63 DEVEVYSRANDQEPCG----WWLAKVRMMKGEFYVIEYAACDATYNEIVTFERLRPVNQN 118
Query: 55 PPIDAKTFHKFDIEVPLDQSDWLISKNG 82
+ TF K ++VP D + ++N
Sbjct: 119 KTVKKNTFFKCTVDVPEDLREACANENA 146
>sp|Q61584|FXR1_MOUSE Fragile X mental retardation syndrome-related protein 1 OS=Mus
musculus GN=Fxr1 PE=1 SV=2
Length = 677
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 11/88 (12%)
Query: 2 DELEV-------EVCGENGAYYKVIVKMIKGDFHVVEYLGCQSTFTEIVPPERMRQKNTN 54
DE+EV E CG ++ V+M+KG+F+V+EY C +T+ EIV ER+R N N
Sbjct: 63 DEVEVYSRANDQEPCG----WWLAKVRMMKGEFYVIEYAACDATYNEIVTFERLRPVNQN 118
Query: 55 PPIDAKTFHKFDIEVPLDQSDWLISKNG 82
+ TF K ++VP D + ++N
Sbjct: 119 KTVKKNTFFKCTVDVPEDLREACANENA 146
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 1 MDELEVEVCGENGAYYKVIVKMIKGDFHVV 30
M EL VEV G NGA+YK +K + D V
Sbjct: 1 MAELTVEVRGSNGAFYKGFIKDVHEDSLTV 30
>sp|Q5BJ56|FXR1_XENTR Fragile X mental retardation syndrome-related protein 1 homolog
OS=Xenopus tropicalis GN=fxr1 PE=2 SV=2
Length = 674
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 45/78 (57%), Gaps = 11/78 (14%)
Query: 2 DELEV-------EVCGENGAYYKVIVKMIKGDFHVVEYLGCQSTFTEIVPPERMRQKNTN 54
DE+EV E CG ++ V+M+KG+F+V+EY C +T+ EIV ER+R N N
Sbjct: 63 DEVEVYSRANDQEPCG----WWLAKVRMMKGEFYVIEYAACDATYNEIVTFERLRPGNQN 118
Query: 55 PPIDAKTFHKFDIEVPLD 72
+ +F K ++VP D
Sbjct: 119 KSVTKSSFFKCTVDVPED 136
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 1 MDELEVEVCGENGAYYKVIVKMIKGDFHVV 30
M++L VEV G NGAYYK VK + D V
Sbjct: 1 MEDLAVEVRGSNGAYYKGFVKDVHEDSLTV 30
>sp|Q2KHP9|FMR1B_XENLA Fragile X mental retardation protein 1 homolog B OS=Xenopus laevis
GN=fmr1-b PE=2 SV=1
Length = 564
Score = 56.6 bits (135), Expect = 5e-08, Method: Composition-based stats.
Identities = 24/53 (45%), Positives = 35/53 (66%)
Query: 20 VKMIKGDFHVVEYLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHKFDIEVPLD 72
V+MIKG+F+V+EY C +T+ EIV +R+R N N +FHK ++VP D
Sbjct: 84 VRMIKGEFYVIEYAACDATYNEIVTIDRLRSVNPNKSATKNSFHKVKLDVPED 136
Score = 32.7 bits (73), Expect = 0.59, Method: Composition-based stats.
Identities = 33/143 (23%), Positives = 55/143 (38%), Gaps = 38/143 (26%)
Query: 1 MDELEVEVCGENGAYYKVIVKMIKGDFHVVEYLGC-----QSTFTEI-VPPERMRQKNTN 54
M+EL VEV G NGA+YK VK + D V + Q F ++ PP K+ N
Sbjct: 1 MEELAVEVRGSNGAFYKAFVKDVHEDSITVTFENNWQQEKQIPFHDVRFPPPSGYNKDIN 60
Query: 55 PPIDAKTFHKFDIEVPLDQSDWLISK-----------------------------NGKNT 85
+ + + + + + P W ++K N
Sbjct: 61 ESDEVEVYSRANEKEP---CCWWLAKVRMIKGEFYVIEYAACDATYNEIVTIDRLRSVNP 117
Query: 86 NPPIDAKTFHKFDIEVPLDVQEL 108
N +FHK ++VP D++++
Sbjct: 118 NKSATKNSFHKVKLDVPEDLRQM 140
>sp|Q7ZTQ5|FXR1B_XENLA Fragile X mental retardation syndrome-related protein 1 homolog B
OS=Xenopus laevis GN=fxr1-b PE=2 SV=1
Length = 675
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 45/78 (57%), Gaps = 11/78 (14%)
Query: 2 DELEV-------EVCGENGAYYKVIVKMIKGDFHVVEYLGCQSTFTEIVPPERMRQKNTN 54
DE+EV E CG ++ V+M+KG+F+V+EY C +T+ EIV ER+R N N
Sbjct: 63 DEVEVYSRANDQEPCG----WWLAKVRMMKGEFYVIEYAACDATYNEIVTFERLRPVNQN 118
Query: 55 PPIDAKTFHKFDIEVPLD 72
+ +F K ++VP D
Sbjct: 119 KSVTKNSFFKCTVDVPED 136
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 1 MDELEVEVCGENGAYYKVIVKMIKGDFHVV 30
M++L VEV G NGA+YK +K + D V
Sbjct: 1 MEDLTVEVRGSNGAFYKGFIKDVHEDSLTV 30
>sp|P51115|FXR1A_XENLA Fragile X mental retardation syndrome-related protein 1 homolog A
OS=Xenopus laevis GN=fxr1-a PE=1 SV=2
Length = 676
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 45/78 (57%), Gaps = 11/78 (14%)
Query: 2 DELEV-------EVCGENGAYYKVIVKMIKGDFHVVEYLGCQSTFTEIVPPERMRQKNTN 54
DE+EV E CG ++ V+M+KG+F+V+EY C +T+ EIV ER+R N N
Sbjct: 63 DEVEVYSRANDQEPCG----WWLAKVRMMKGEFYVIEYAACDATYNEIVTFERLRPVNQN 118
Query: 55 PPIDAKTFHKFDIEVPLD 72
+ +F K ++VP D
Sbjct: 119 KTVTKNSFFKCTVDVPED 136
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 1 MDELEVEVCGENGAYYKVIVKMIKGDFHVV 30
M+++ VEV G NGA+YK VK + D V
Sbjct: 1 MEDMTVEVRGSNGAFYKGFVKDVHEDSLTV 30
>sp|P51116|FXR2_HUMAN Fragile X mental retardation syndrome-related protein 2 OS=Homo
sapiens GN=FXR2 PE=1 SV=2
Length = 673
Score = 55.8 bits (133), Expect = 7e-08, Method: Composition-based stats.
Identities = 32/78 (41%), Positives = 44/78 (56%), Gaps = 11/78 (14%)
Query: 2 DELEV-------EVCGENGAYYKVIVKMIKGDFHVVEYLGCQSTFTEIVPPERMRQKNTN 54
DE+EV E CG ++ V+M+KGDF+V+EY C +T+ EIV ER+R N N
Sbjct: 73 DEVEVYSRANEQEPCG----WWLARVRMMKGDFYVIEYAACDATYNEIVTLERLRPVNPN 128
Query: 55 PPIDAKTFHKFDIEVPLD 72
P +F K + VP D
Sbjct: 129 PLATKGSFFKVTMAVPED 146
>sp|Q9WVR4|FXR2_MOUSE Fragile X mental retardation syndrome-related protein 2 OS=Mus
musculus GN=Fxr2 PE=1 SV=1
Length = 673
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 34/53 (64%)
Query: 20 VKMIKGDFHVVEYLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHKFDIEVPLD 72
V+M+KGDF+V+EY C +T+ EIV ER+R N++ +F K + VP D
Sbjct: 94 VRMMKGDFYVIEYAACDATYNEIVTLERLRPVNSSSLATKGSFFKVTMAVPED 146
>sp|Q9UUG8|TUP12_SCHPO Transcriptional repressor tup12 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=tup12 PE=1 SV=2
Length = 598
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 37 STFTEIVPPERMRQK-NTNPPIDAKTFHKFDIEVPLDQSDWLISKNGKNTNPPIDAKTFH 95
S+ T I P + K + NPP A+ ++ ++ DW ++ N N PPI + H
Sbjct: 236 SSVTPIAAPLVVNGKVSGNPPYPAEIIPTSNVP-NREEKDWTVTSNVPNKEPPISVQLLH 294
Query: 96 KFD 98
+
Sbjct: 295 TLE 297
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.139 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,218,191
Number of Sequences: 539616
Number of extensions: 1941173
Number of successful extensions: 3854
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 3801
Number of HSP's gapped (non-prelim): 60
length of query: 114
length of database: 191,569,459
effective HSP length: 82
effective length of query: 32
effective length of database: 147,320,947
effective search space: 4714270304
effective search space used: 4714270304
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)