RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy987
(114 letters)
>gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase.
Length = 335
Score = 31.3 bits (71), Expect = 0.067
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 26 DFHVVEYLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHKFDIEVP-LDQSD 75
+ V+ + S E +P E +R + P I TFH D +VP +D SD
Sbjct: 2 EVERVQAIASSSLLKETIPEEFIRSEKEQPAI--TTFHGVDPQVPTIDLSD 50
>gnl|CDD|176903 cd08894, SRPBCC_CalC_Aha1-like_1, Putative hydrophobic
ligand-binding SRPBCC domain of an uncharacterized
subgroup of CalC- and Aha1-like proteins. SRPBCC
(START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a
functionally uncharacterized subgroup of CalC- and
Aha1-like proteins. This group shows similarity to the
SRPBCC domains of Micromonospora echinospora CalC (a
protein which confers resistance to enediynes) and
human Aha1 (one of several co-chaperones which regulate
the dimeric chaperone Hsp90), and belongs to the SRPBCC
domain superfamily of proteins that bind hydrophobic
ligands. SRPBCC domains have a deep hydrophobic
ligand-binding pocket and they bind diverse ligands.
Length = 139
Score = 29.6 bits (67), Expect = 0.21
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 6/40 (15%)
Query: 36 QSTFTEIVPPERMRQKNTNPPIDAKTFHKFDIEVPLDQSD 75
+ F EI PPER+ + + P +F + V ++
Sbjct: 64 RIVFLEIEPPERIVYDHGSGP------PRFRLTVTFEEQG 97
>gnl|CDD|216521 pfam01477, PLAT, PLAT/LH2 domain. This domain is found in a
variety of membrane or lipid associated proteins. It is
called the PLAT (Polycystin-1, Lipoxygenase,
Alpha-Toxin) domain or LH2 (Lipoxygenase homology)
domain. The known structure of pancreatic lipase shows
this domain binds to procolipase pfam01114, which
mediates membrane association. So it appears possible
that this domain mediates membrane attachment via other
protein binding partners. The structure of this domain
is known for many members of the family and is composed
of a beta sandwich.
Length = 115
Score = 27.3 bits (61), Expect = 1.2
Identities = 8/45 (17%), Positives = 16/45 (35%), Gaps = 8/45 (17%)
Query: 76 WLISKNGKNTNPPIDAKTFH--------KFDIEVPLDVQELGLMR 112
L +GK+ P+ F + D+ +LG ++
Sbjct: 22 SLYGTHGKSGEYPLLEPELKPDDRGSTDSFTFDTDEDLGDLGAIK 66
>gnl|CDD|224827 COG1915, COG1915, Uncharacterized conserved protein [Function
unknown].
Length = 415
Score = 27.8 bits (62), Expect = 1.4
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Query: 1 MDELEVEVCGENGAYYKVIVKMIKGDFHVVEYLGCQSTFTEIVPPERMRQKNT 53
MD V A K I ++ KGD VV G + ++PPER R+K
Sbjct: 120 MDCAIVVTPEPRRARCKPIRELKKGDLVVVGVEGIR-----VIPPERPREKTG 167
>gnl|CDD|200465 cd11326, AmyAc_Glg_debranch, Alpha amylase catalytic domain found
in glycogen debranching enzymes. Debranching enzymes
facilitate the breakdown of glycogen through
glucosyltransferase and glucosidase activity. These
activities are performed by a single enzyme in mammals,
yeast, and some bacteria, but by two distinct enzymes in
Escherichia coli and other bacteria. Debranching enzymes
perform two activities: 4-alpha-D-glucanotransferase (EC
2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33).
4-alpha-D-glucanotransferase catalyzes the
endohydrolysis of 1,6-alpha-D-glucoside linkages at
points of branching in chains of 1,4-linked
alpha-D-glucose residues. Amylo-alpha-1,6-glucosidase
catalyzes the endohydrolysis of 1,6-alpha-D-glucoside
linkages at points of branching in chains of 1,4-linked
alpha-D-glucose residues. In Escherichia coli, GlgX is
the debranching enzyme and malQ is the
4-alpha-glucanotransferase. TreX, an archaeal
glycogen-debranching enzyme has dual activities like
mammals and yeast, but is structurally similar to GlgX.
TreX exists in two oligomeric states, a dimer and
tetramer. Isoamylase (EC 3.2.1.68) is one of the
starch-debranching enzymes that catalyzes the hydrolysis
of alpha-1,6-glucosidic linkages specific in
alpha-glucans such as amylopectin or glycogen and their
beta-limit dextrins. The Alpha-amylase family comprises
the largest family of glycoside hydrolases (GH), with
the majority of enzymes acting on starch, glycogen, and
related oligo- and polysaccharides. These proteins
catalyze the transformation of alpha-1,4 and alpha-1,6
glucosidic linkages with retention of the anomeric
center. The protein is described as having 3 domains: A,
B, C. A is a (beta/alpha) 8-barrel; B is a loop between
the beta 3 strand and alpha 3 helix of A; C is the
C-terminal extension characterized by a Greek key. The
majority of the enzymes have an active site cleft found
between domains A and B where a triad of catalytic
residues (Asp, Glu and Asp) performs catalysis. Other
members of this family have lost the catalytic activity
as in the case of the human 4F2hc, or only have 2
residues that serve as the catalytic nucleophile and the
acid/base, such as Thermus A4 beta-galactosidase with 2
Glu residues (GH42) and human alpha-galactosidase with 2
Asp residues (GH31). The family members are quite
extensive and include: alpha amylase,
maltosyltransferase, cyclodextrin glycotransferase,
maltogenic amylase, neopullulanase, isoamylase,
1,4-alpha-D-glucan maltotetrahydrolase,
4-alpha-glucotransferase, oligo-1,6-glucosidase,
amylosucrase, sucrose phosphorylase, and amylomaltase.
Length = 433
Score = 27.0 bits (61), Expect = 2.2
Identities = 9/14 (64%), Positives = 9/14 (64%)
Query: 92 KTFHKFDIEVPLDV 105
K HK IEV LDV
Sbjct: 116 KALHKAGIEVILDV 129
>gnl|CDD|219798 pfam08327, AHSA1, Activator of Hsp90 ATPase homolog 1-like
protein. This family includes eukaryotic, prokaryotic
and archaeal proteins that bear similarity to a
C-terminal region of human activator of 90 kDa heat
shock protein ATPase homolog 1 (AHSA1/p38). This
protein is known to interact with the middle domain of
Hsp90, and stimulate its ATPase activity. It is
probably a general upregulator of Hsp90 function,
particularly contributing to its efficiency in
conditions of increased stress. p38 is also known to
interact with the cytoplasmic domain of the VSV G
protein, and may thus be involved in protein transport.
It has also been reported as being underexpressed in
Down's syndrome. This region is found repeated in two
members of this family.
Length = 125
Score = 25.0 bits (55), Expect = 7.2
Identities = 12/49 (24%), Positives = 17/49 (34%), Gaps = 5/49 (10%)
Query: 25 GDFHVVEY-----LGCQSTFTEIVPPERMRQKNTNPPIDAKTFHKFDIE 68
G F V G T+ E+VPPER+ + +E
Sbjct: 34 GRFRFVMRGDGEEFGGNGTYLEVVPPERIVYTWRLFDWPEGGYSTVTVE 82
>gnl|CDD|220785 pfam10498, IFT57, Intra-flagellar transport protein 57.
Eukaryotic cilia and flagella are specialised
organelles found at the periphery of cells of diverse
organisms. Intra-flagellar transport (IFT) is required
for the assembly and maintenance of eukaryotic cilia
and flagella, and consists of the bidirectional
movement of large protein particles between the base
and the distal tip of the organelle. IFT particles
contain multiple copies of two distinct protein
complexes, A and B, which contain at least 6 and 11
protein subunits. IFT57 is part of complex B but is
not, however, required for the core subunits to stay
associated. This protein is known as
Huntington-interacting protein-1 in humans.
Length = 355
Score = 25.4 bits (56), Expect = 7.4
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 76 WLISKNGKNTNPPID 90
WL+SK G+ P +
Sbjct: 51 WLMSKAGRKFEQPQE 65
>gnl|CDD|177880 PLN02236, PLN02236, choline kinase.
Length = 344
Score = 25.4 bits (56), Expect = 7.6
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 8/60 (13%)
Query: 60 KTFHKFDIEVPLDQS------DWLISKNGKNTNPPIDAKTFHKFDIEVPLDVQELGLMRD 113
+ FH D+ P + +WL K KN P +AK F +E +++ E L D
Sbjct: 139 REFHSLDMPGPKNVLLWDRLRNWL--KEAKNLCSPEEAKEFRLDSLEDEINLLEKELSGD 196
>gnl|CDD|233980 TIGR02712, urea_carbox, urea carboxylase. Members of this family
are ATP-dependent urea carboxylase, including
characterized members from Oleomonas sagaranensis (alpha
class Proteobacterium) and yeasts such as Saccharomyces
cerevisiae. The allophanate hydrolase domain of the
yeast enzyme is not included in this model and is
represented by an adjacent gene in Oleomonas
sagaranensis. The fusion of urea carboxylase and
allophanate hydrolase is designated urea amidolyase. The
enzyme from Oleomonas sagaranensis was shown to be
highly active on acetamide and formamide as well as urea
[Central intermediary metabolism, Nitrogen metabolism].
Length = 1201
Score = 25.4 bits (56), Expect = 7.9
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 23 IKGDFHVVEYLGCQSTFT 40
I+G V +YLG +STFT
Sbjct: 565 IRGGIDVPDYLGSRSTFT 582
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.139 0.420
Gapped
Lambda K H
0.267 0.0757 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,961,620
Number of extensions: 503498
Number of successful extensions: 371
Number of sequences better than 10.0: 1
Number of HSP's gapped: 371
Number of HSP's successfully gapped: 16
Length of query: 114
Length of database: 10,937,602
Length adjustment: 78
Effective length of query: 36
Effective length of database: 7,477,990
Effective search space: 269207640
Effective search space used: 269207640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.1 bits)