RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy987
         (114 letters)



>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains,
           FXR2, structura genomics, structural genomics
           consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A
           2bkd_N*
          Length = 128

 Score = 63.9 bits (155), Expect = 1e-14
 Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 5/63 (7%)

Query: 5   EVEV-----CGENGAYYKVIVKMIKGDFHVVEYLGCQSTFTEIVPPERMRQKNTNPPIDA 59
           EVEV       E   ++   V+M+KGDF+V+EY  C +T+ EIV  ER+R  N NP    
Sbjct: 66  EVEVYSRANEQEPCGWWLARVRMMKGDFYVIEYAACDATYNEIVTLERLRPVNPNPLATK 125

Query: 60  KTF 62
            +F
Sbjct: 126 GSF 128



 Score = 39.3 bits (91), Expect = 4e-05
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 1  MDELEVEVCGENGAYYKVIVKMIKGDFHVVEYLGCQSTFTEIVPPERMR 49
             L VEV G NGA+YK  VK +  D   + +     +    +P   +R
Sbjct: 3  FQGLPVEVRGSNGAFYKGFVKDVHEDSVTIFFENNWQS-ERQIPFGDVR 50


>1z94_A Conserved hypothetical protein; NESG, CV1439, structural
          genomics, PSI structure initiative; 2.10A
          {Chromobacterium violaceum} SCOP: d.129.3.5
          Length = 147

 Score = 26.3 bits (58), Expect = 2.0
 Identities = 13/49 (26%), Positives = 18/49 (36%), Gaps = 8/49 (16%)

Query: 2  DELEVEVCGENGAYYKVIVKMIKGDFHVVEYLGCQSTFTEIVPPERMRQ 50
           E +  V    GAY    +    G  H          + E+VP ER+R 
Sbjct: 42 LEHDARV---GGAYKMEFLAFASGQKHAFG-----GRYLELVPGERIRY 82


>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces
           lactis}
          Length = 1236

 Score = 26.5 bits (59), Expect = 2.4
 Identities = 10/19 (52%), Positives = 12/19 (63%)

Query: 23  IKGDFHVVEYLGCQSTFTE 41
           I+G   V EYLG +STF  
Sbjct: 592 IRGGIDVPEYLGSRSTFAM 610


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 26.4 bits (57), Expect = 3.0
 Identities = 16/105 (15%), Positives = 29/105 (27%), Gaps = 17/105 (16%)

Query: 2   DELEVEVCGENGAYYKVIVKMIKGDFHVVEY---LGCQSTFTEIVPPERMRQKNTNPPID 58
            +L  EV   N     +I + I+      +    + C    T I+           P   
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNC-DKLTTII---ESSLNVLEPAEY 371

Query: 59  AKTFHKF-----DIEVPLD--QSDWLISKNGKNTNPPIDAKTFHK 96
            K F +         +P       W    +   ++  +     HK
Sbjct: 372 RKMFDRLSVFPPSAHIPTILLSLIWF---DVIKSDVMVVVNKLHK 413


>1bf2_A Isoamylase; hydrolase, glycosidase, debranching enzyme; 2.00A
           {Pseudomonas amyloderamosa} SCOP: b.1.18.2 b.71.1.1
           c.1.8.1
          Length = 750

 Score = 25.4 bits (56), Expect = 5.5
 Identities = 6/14 (42%), Positives = 9/14 (64%)

Query: 92  KTFHKFDIEVPLDV 105
           + FH   I+V +DV
Sbjct: 280 QAFHNAGIKVYMDV 293


>3m9q_A Protein MALE-specific lethal-3; chromodomain, MSL3, methyllysine
          recognition, aromatic CAGE, complex, transcription
          upregulation; 1.29A {Drosophila melanogaster}
          Length = 101

 Score = 24.2 bits (52), Expect = 7.1
 Identities = 2/31 (6%), Positives = 11/31 (35%)

Query: 24 KGDFHVVEYLGCQSTFTEIVPPERMRQKNTN 54
          +   + + + G + ++   V    + +    
Sbjct: 57 RFYEYKIHFQGWRPSYDRAVRATVLLKDTEE 87


>2vr5_A Glycogen operon protein GLGX; hydrolase, glycosidase, glycosyl
           hydrolase, glycogen debraching; HET: GLC A16; 2.8A
           {Sulfolobus solfataricus} PDB: 2vnc_A* 2vuy_A
          Length = 718

 Score = 24.9 bits (55), Expect = 7.2
 Identities = 6/14 (42%), Positives = 7/14 (50%)

Query: 92  KTFHKFDIEVPLDV 105
              H   IEV +DV
Sbjct: 274 NELHNAGIEVIIDV 287


>2wsk_A Glycogen debranching enzyme; carbohydrate metabolism, hydrolase,
           glycosidase, ISO-amylase glycosyl hydrolase, glycogen
           metabolism; 2.25A {Escherichia coli k-12}
          Length = 657

 Score = 24.9 bits (55), Expect = 8.7
 Identities = 8/14 (57%), Positives = 9/14 (64%)

Query: 92  KTFHKFDIEVPLDV 105
           K  HK  IEV LD+
Sbjct: 249 KALHKAGIEVILDI 262


>3eli_A AHSA1, AHA1 domain protein; alpha-beta protein, structural
           genomics, PSI-2, protein structure initiative; 2.80A
           {Silicibacter pomeroyi} SCOP: d.129.3.5
          Length = 152

 Score = 24.3 bits (53), Expect = 9.8
 Identities = 4/42 (9%), Positives = 12/42 (28%)

Query: 34  GCQSTFTEIVPPERMRQKNTNPPIDAKTFHKFDIEVPLDQSD 75
                 T + PP+ +         D +   +  +   ++   
Sbjct: 66  KVSGQVTHVKPPQSVGFTWGWHDDDDRRGAESHVMFIVEPCA 107


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.319    0.139    0.420 

Gapped
Lambda     K      H
   0.267   0.0723    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,869,545
Number of extensions: 100219
Number of successful extensions: 243
Number of sequences better than 10.0: 1
Number of HSP's gapped: 242
Number of HSP's successfully gapped: 28
Length of query: 114
Length of database: 6,701,793
Length adjustment: 77
Effective length of query: 37
Effective length of database: 4,551,876
Effective search space: 168419412
Effective search space used: 168419412
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.4 bits)