RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy987
         (114 letters)



>d1v05a_ b.1.18.10 (A:) Filamin C {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 96

 Score = 23.0 bits (49), Expect = 6.3
 Identities = 8/31 (25%), Positives = 13/31 (41%)

Query: 2  DELEVEVCGENGAYYKVIVKMIKGDFHVVEY 32
          + + V V G      +V VK +    + V Y
Sbjct: 37 NMMMVGVHGPKTPCEEVYVKHMGNRVYNVTY 67


>d1j4wa1 d.51.1.1 (A:1-74) Far upstream binding element, FBP
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 74

 Score = 22.9 bits (49), Expect = 6.6
 Identities = 6/22 (27%), Positives = 11/22 (50%)

Query: 63 HKFDIEVPLDQSDWLISKNGKN 84
          H  D+ +P      +I +NG+ 
Sbjct: 3  HMIDVPIPRFAVGIVIGRNGEM 24


>d2asba3 d.52.3.1 (A:263-329) Transcription factor NusA,
          C-terminal domains {Mycobacterium tuberculosis [TaxId:
          1773]}
          Length = 67

 Score = 22.3 bits (48), Expect = 8.7
 Identities = 7/22 (31%), Positives = 9/22 (40%)

Query: 63 HKFDIEVPLDQSDWLISKNGKN 84
              + VP  Q    I K G+N
Sbjct: 26 RAARVVVPDFQLSLAIGKEGQN 47


>d2olra2 c.109.1.1 (A:6-227) Phosphoenolpyruvate (PEP) carboxykinase
           (ATP-oxaloacetate carboxy-lyase) {Escherichia coli
           [TaxId: 562]}
          Length = 222

 Score = 23.4 bits (50), Expect = 8.8
 Identities = 10/48 (20%), Positives = 13/48 (27%), Gaps = 3/48 (6%)

Query: 50  QKNTNPPIDAKTFHKFDIEVPLDQSDWLISKNGKNTNPPIDAKTFHKF 97
                 P D             D   W     GKN N P+  +T+   
Sbjct: 56  IFTGRSPKDKYIVRDDTTR---DTFWWADKGKGKNDNKPLSPETWQHL 100


>d1bbha_ a.24.3.2 (A:) Cytochrome c' {Chromatium vinosum [TaxId:
          1049]}
          Length = 131

 Score = 23.0 bits (49), Expect = 8.9
 Identities = 3/17 (17%), Positives = 7/17 (41%)

Query: 11 ENGAYYKVIVKMIKGDF 27
            G     I   ++G++
Sbjct: 18 FMGWNMGKIKANLEGEY 34


>d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase,
          central and FMN domains {Synechocystis sp. [TaxId:
          1143]}
          Length = 809

 Score = 23.4 bits (50), Expect = 9.0
 Identities = 6/7 (85%), Positives = 6/7 (85%)

Query: 53 TNPPIDA 59
          TNPPID 
Sbjct: 73 TNPPIDP 79



 Score = 23.4 bits (50), Expect = 9.0
 Identities = 6/7 (85%), Positives = 6/7 (85%)

Query: 85 TNPPIDA 91
          TNPPID 
Sbjct: 73 TNPPIDP 79


>d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase,
          central and FMN domains {Azospirillum brasilense
          [TaxId: 192]}
          Length = 771

 Score = 23.3 bits (50), Expect = 9.3
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 53 TNPPIDA 59
          TNPPID+
Sbjct: 85 TNPPIDS 91



 Score = 23.3 bits (50), Expect = 9.3
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 85 TNPPIDA 91
          TNPPID+
Sbjct: 85 TNPPIDS 91


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.139    0.420 

Gapped
Lambda     K      H
   0.267   0.0568    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 468,401
Number of extensions: 20927
Number of successful extensions: 87
Number of sequences better than 10.0: 1
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 19
Length of query: 114
Length of database: 2,407,596
Length adjustment: 72
Effective length of query: 42
Effective length of database: 1,419,036
Effective search space: 59599512
Effective search space used: 59599512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.2 bits)