BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy9871
         (340 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3UGC|A Chain A, Structural Basis Of Jak2 Inhibition By The Type Ii
           Inhibtor Nvp-Bbt594
          Length = 295

 Score = 30.8 bits (68), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 15/96 (15%)

Query: 51  MSASLLSDMESFKAANPGAILEDFIRWYSPRDFIESSELDQYGQKKGSLSARMLLPGNTW 110
           ++  L  D E FK   PG   E  I WY+P    ES         K S+++ +   G   
Sbjct: 160 LTKVLPQDKEFFKVKEPG---ESPIFWYAPESLTES---------KFSVASDVWSFGVVL 207

Query: 111 REVW---EAAKPVPARRQRRLFNDTKEAEKILHLFE 143
            E++   E +K  PA   R + ND +    + HL E
Sbjct: 208 YELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIE 243


>pdb|4BBE|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
 pdb|4BBE|B Chain B, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
 pdb|4BBE|C Chain C, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
 pdb|4BBE|D Chain D, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
 pdb|4BBF|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
 pdb|4BBF|B Chain B, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
 pdb|4BBF|C Chain C, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
 pdb|4BBF|D Chain D, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
          Length = 298

 Score = 30.0 bits (66), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 15/96 (15%)

Query: 51  MSASLLSDMESFKAANPGAILEDFIRWYSPRDFIESSELDQYGQKKGSLSARMLLPGNTW 110
           ++  L  D E +K   PG   E  I WY+P    ES         K S+++ +   G   
Sbjct: 161 LTKVLPQDKEYYKVKEPG---ESPIFWYAPESLTES---------KFSVASDVWSFGVVL 208

Query: 111 REVW---EAAKPVPARRQRRLFNDTKEAEKILHLFE 143
            E++   E +K  PA   R + ND +    + HL E
Sbjct: 209 YELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIE 244


>pdb|2WJV|A Chain A, Crystal Structure Of The Complex Between Human Nonsense
           Mediated Decay Factors Upf1 And Upf2
 pdb|2WJV|B Chain B, Crystal Structure Of The Complex Between Human Nonsense
           Mediated Decay Factors Upf1 And Upf2
 pdb|2WJY|A Chain A, Crystal Structure Of The Complex Between Human Nonsense
           Mediated Decay Factors Upf1 And Upf2 Orthorhombic Form
          Length = 800

 Score = 29.3 bits (64), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 42  ESSQLRAKLMSASLLSDMESFKAANPGAILEDF 74
           E  QLRA+ ++A  ++ +E     NP A LED 
Sbjct: 134 EQEQLRARQITAQQINKLEELWKENPSATLEDL 166


>pdb|1LAR|A Chain A, Crystal Structure Of The Tandem Phosphatase Domains Of
           Rptp Lar
 pdb|1LAR|B Chain B, Crystal Structure Of The Tandem Phosphatase Domains Of
           Rptp Lar
          Length = 575

 Score = 28.9 bits (63), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)

Query: 75  IRWYSPRDFIESSELDQYGQKKGSLSARMLLPGNT---WREVWE 115
           IR     D+I +S LD Y Q+K  ++ +  L  +T   WR +WE
Sbjct: 354 IRGVEGSDYINASFLDGYRQQKAYIATQGPLAESTEDFWRMLWE 397


>pdb|3JY9|A Chain A, Janus Kinase 2 Inhibitors
          Length = 311

 Score = 28.5 bits (62), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 66/158 (41%), Gaps = 28/158 (17%)

Query: 2   SNVRKLILYYQISLDFLIVIKTEDQIEEDAEFL---------LSLGTDLESSQLRAKL-- 50
            ++R  +  ++  +D + +++   QI +  E+L         L+    L  ++ R K+  
Sbjct: 116 GSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGD 175

Query: 51  --MSASLLSDMESFKAANPGAILEDFIRWYSPRDFIESSELDQYGQKKGSLSARMLLPGN 108
             ++  L  D E  K   PG   E  I WY+P    ES         K S+++ +   G 
Sbjct: 176 FGLTKVLPQDKEXXKVKEPG---ESPIFWYAPESLTES---------KFSVASDVWSFGV 223

Query: 109 TWREVW---EAAKPVPARRQRRLFNDTKEAEKILHLFE 143
              E++   E +K  PA   R + ND +    + HL E
Sbjct: 224 VLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIE 261


>pdb|3IO7|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective
           Inhibitors Of Jak2
 pdb|3IOK|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective
           Inhibitors Of Jak2
 pdb|3KCK|A Chain A, A Novel Chemotype Of Kinase Inhibitors
          Length = 313

 Score = 28.5 bits (62), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 66/158 (41%), Gaps = 28/158 (17%)

Query: 2   SNVRKLILYYQISLDFLIVIKTEDQIEEDAEFL---------LSLGTDLESSQLRAKL-- 50
            ++R  +  ++  +D + +++   QI +  E+L         L+    L  ++ R K+  
Sbjct: 116 GSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGD 175

Query: 51  --MSASLLSDMESFKAANPGAILEDFIRWYSPRDFIESSELDQYGQKKGSLSARMLLPGN 108
             ++  L  D E  K   PG   E  I WY+P    ES         K S+++ +   G 
Sbjct: 176 FGLTKVLPQDKEXXKVKEPG---ESPIFWYAPESLTES---------KFSVASDVWSFGV 223

Query: 109 TWREVW---EAAKPVPARRQRRLFNDTKEAEKILHLFE 143
              E++   E +K  PA   R + ND +    + HL E
Sbjct: 224 VLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIE 261


>pdb|2B7A|A Chain A, The Structural Basis Of Janus Kinase 2 Inhibition By A
           Potent And Specific Pan-Janus Kinase Inhibitor
 pdb|2B7A|B Chain B, The Structural Basis Of Janus Kinase 2 Inhibition By A
           Potent And Specific Pan-Janus Kinase Inhibitor
 pdb|3FUP|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
 pdb|3FUP|B Chain B, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
          Length = 293

 Score = 28.5 bits (62), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 15/96 (15%)

Query: 51  MSASLLSDMESFKAANPGAILEDFIRWYSPRDFIESSELDQYGQKKGSLSARMLLPGNTW 110
           ++  L  D E  K   PG   E  I WY+P    ES         K S+++ +   G   
Sbjct: 158 LTKVLPQDKEXXKVKEPG---ESPIFWYAPESLTES---------KFSVASDVWSFGVVL 205

Query: 111 REVW---EAAKPVPARRQRRLFNDTKEAEKILHLFE 143
            E++   E +K  PA   R + ND +    + HL E
Sbjct: 206 YELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIE 241


>pdb|4E6D|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
           Compound 7
 pdb|4E6D|B Chain B, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
           Compound 7
 pdb|4E6Q|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
           Compound 12
 pdb|4E6Q|B Chain B, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
           Compound 12
          Length = 298

 Score = 28.5 bits (62), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 67/158 (42%), Gaps = 28/158 (17%)

Query: 2   SNVRKLILYYQISLDFLIVIKTEDQIEEDAEFL---------LSLGTDLESSQLRAKL-- 50
            ++R+ +  ++  +D + +++   QI +  E+L         L+    L  ++ R K+  
Sbjct: 101 GSLREYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGD 160

Query: 51  --MSASLLSDMESFKAANPGAILEDFIRWYSPRDFIESSELDQYGQKKGSLSARMLLPGN 108
             ++  L  D E  K   PG   E  I WY+P    ES         K S+++ +   G 
Sbjct: 161 FGLTKVLPQDKEXXKVKEPG---ESPIFWYAPESLTES---------KFSVASDVWSFGV 208

Query: 109 TWREVW---EAAKPVPARRQRRLFNDTKEAEKILHLFE 143
              E++   E +K  PA   R + ND +    + HL E
Sbjct: 209 VLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIE 246


>pdb|2W1I|A Chain A, Structure Determination Of Aurora Kinase In Complex With
           Inhibitor
 pdb|2W1I|B Chain B, Structure Determination Of Aurora Kinase In Complex With
           Inhibitor
          Length = 326

 Score = 28.5 bits (62), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 15/96 (15%)

Query: 51  MSASLLSDMESFKAANPGAILEDFIRWYSPRDFIESSELDQYGQKKGSLSARMLLPGNTW 110
           ++  L  D E  K   PG   E  I WY+P    ES         K S+++ +   G   
Sbjct: 191 LTKVLPQDKEXXKVKEPG---ESPIFWYAPESLTES---------KFSVASDVWSFGVVL 238

Query: 111 REVW---EAAKPVPARRQRRLFNDTKEAEKILHLFE 143
            E++   E +K  PA   R + ND +    + HL E
Sbjct: 239 YELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIE 274


>pdb|3LPB|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent
           2,8-Diaryl Quinoxaline Inhibitor
 pdb|3LPB|B Chain B, Crystal Structure Of Jak2 Complexed With A Potent
           2,8-Diaryl Quinoxaline Inhibitor
 pdb|3KRR|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent
           Quinoxaline Atp Site Inhibitor
          Length = 295

 Score = 28.5 bits (62), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 15/96 (15%)

Query: 51  MSASLLSDMESFKAANPGAILEDFIRWYSPRDFIESSELDQYGQKKGSLSARMLLPGNTW 110
           ++  L  D E  K   PG   E  I WY+P    ES         K S+++ +   G   
Sbjct: 160 LTKVLPQDKEXXKVKEPG---ESPIFWYAPESLTES---------KFSVASDVWSFGVVL 207

Query: 111 REVW---EAAKPVPARRQRRLFNDTKEAEKILHLFE 143
            E++   E +K  PA   R + ND +    + HL E
Sbjct: 208 YELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIE 243


>pdb|3Q32|A Chain A, Structure Of Janus Kinase 2 With A Pyrrolotriazine
           Inhibitor
 pdb|3Q32|B Chain B, Structure Of Janus Kinase 2 With A Pyrrolotriazine
           Inhibitor
          Length = 301

 Score = 28.5 bits (62), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 15/96 (15%)

Query: 51  MSASLLSDMESFKAANPGAILEDFIRWYSPRDFIESSELDQYGQKKGSLSARMLLPGNTW 110
           ++  L  D E  K   PG   E  I WY+P    ES         K S+++ +   G   
Sbjct: 160 LTKVLPQDKEXXKVKEPG---ESPIFWYAPESLTES---------KFSVASDVWSFGVVL 207

Query: 111 REVW---EAAKPVPARRQRRLFNDTKEAEKILHLFE 143
            E++   E +K  PA   R + ND +    + HL E
Sbjct: 208 YELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIE 243


>pdb|3RVG|A Chain A, Crystals Structure Of Jak2 With A
           1-Amino-5h-Pyrido[4,3-B]indol-4- Carboxamide Inhibitor
          Length = 303

 Score = 28.5 bits (62), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 15/96 (15%)

Query: 51  MSASLLSDMESFKAANPGAILEDFIRWYSPRDFIESSELDQYGQKKGSLSARMLLPGNTW 110
           ++  L  D E  K   PG   E  I WY+P    ES         K S+++ +   G   
Sbjct: 164 LTKVLPQDKEXXKVKEPG---ESPIFWYAPESLTES---------KFSVASDVWSFGVVL 211

Query: 111 REVW---EAAKPVPARRQRRLFNDTKEAEKILHLFE 143
            E++   E +K  PA   R + ND +    + HL E
Sbjct: 212 YELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIE 247


>pdb|2XA4|A Chain A, Inhibitors Of Jak2 Kinase Domain
 pdb|2XA4|B Chain B, Inhibitors Of Jak2 Kinase Domain
          Length = 298

 Score = 28.5 bits (62), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 15/96 (15%)

Query: 51  MSASLLSDMESFKAANPGAILEDFIRWYSPRDFIESSELDQYGQKKGSLSARMLLPGNTW 110
           ++  L  D E  K   PG   E  I WY+P    ES         K S+++ +   G   
Sbjct: 163 LTKVLPQDKEXXKVKEPG---ESPIFWYAPESLTES---------KFSVASDVWSFGVVL 210

Query: 111 REVW---EAAKPVPARRQRRLFNDTKEAEKILHLFE 143
            E++   E +K  PA   R + ND +    + HL E
Sbjct: 211 YELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIE 246


>pdb|3E62|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
 pdb|3E63|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
 pdb|3E64|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
          Length = 293

 Score = 28.5 bits (62), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 15/96 (15%)

Query: 51  MSASLLSDMESFKAANPGAILEDFIRWYSPRDFIESSELDQYGQKKGSLSARMLLPGNTW 110
           ++  L  D E  K   PG   E  I WY+P    ES         K S+++ +   G   
Sbjct: 159 LTKVLPQDKEXXKVKEPG---ESPIFWYAPESLTES---------KFSVASDVWSFGVVL 206

Query: 111 REVW---EAAKPVPARRQRRLFNDTKEAEKILHLFE 143
            E++   E +K  PA   R + ND +    + HL E
Sbjct: 207 YELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIE 242


>pdb|4AQC|A Chain A, Triazolopyridine-Based Inhibitor Of Janus Kinase 2
 pdb|4AQC|B Chain B, Triazolopyridine-Based Inhibitor Of Janus Kinase 2
          Length = 301

 Score = 28.1 bits (61), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 66/158 (41%), Gaps = 28/158 (17%)

Query: 2   SNVRKLILYYQISLDFLIVIKTEDQIEEDAEFL---------LSLGTDLESSQLRAKL-- 50
            ++R  +  ++  +D + +++   QI +  E+L         L+    L  ++ R K+  
Sbjct: 104 GSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGD 163

Query: 51  --MSASLLSDMESFKAANPGAILEDFIRWYSPRDFIESSELDQYGQKKGSLSARMLLPGN 108
             ++  L  D E  K   PG   E  I WY+P    ES         K S+++ +   G 
Sbjct: 164 FGLTKVLPQDKEXXKVKEPG---ESPIFWYAPESLTES---------KFSVASDVWSFGV 211

Query: 109 TWREVW---EAAKPVPARRQRRLFNDTKEAEKILHLFE 143
              E++   E +K  PA   R + ND +    + HL E
Sbjct: 212 VLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIE 249


>pdb|3TJC|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 8
 pdb|3TJC|B Chain B, Co-Crystal Structure Of Jak2 With Thienopyridine 8
 pdb|3TJD|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 19
 pdb|3TJD|B Chain B, Co-Crystal Structure Of Jak2 With Thienopyridine 19
          Length = 298

 Score = 28.1 bits (61), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 15/96 (15%)

Query: 51  MSASLLSDMESFKAANPGAILEDFIRWYSPRDFIESSELDQYGQKKGSLSARMLLPGNTW 110
           ++  L  D E  K   PG   E  I WY+P    ES         K S+++ +   G   
Sbjct: 163 LTKVLPQDKEXXKVKEPG---ESPIFWYAPESLTES---------KFSVASDVWSFGVVL 210

Query: 111 REVW---EAAKPVPARRQRRLFNDTKEAEKILHLFE 143
            E++   E +K  PA   R + ND +    + HL E
Sbjct: 211 YELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIE 246


>pdb|3SR9|A Chain A, Crystal Structure Of Mouse Ptpsigma
          Length = 583

 Score = 28.1 bits (61), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 3/44 (6%)

Query: 75  IRWYSPRDFIESSELDQYGQKKGSLSARMLLPGNT---WREVWE 115
           IR     D+I +S +D Y Q+K  ++ +  L   T   WR +WE
Sbjct: 368 IRGVEGSDYINASFIDGYRQQKAYIATQGPLAETTEDFWRALWE 411


>pdb|4HGE|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8
 pdb|4HGE|B Chain B, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8
          Length = 300

 Score = 28.1 bits (61), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 15/96 (15%)

Query: 51  MSASLLSDMESFKAANPGAILEDFIRWYSPRDFIESSELDQYGQKKGSLSARMLLPGNTW 110
           ++  L  D E  K   PG   E  I WY+P    ES         K S+++ +   G   
Sbjct: 165 LTKVLPQDKEXXKVKEPG---ESPIFWYAPESLTES---------KFSVASDVWSFGVVL 212

Query: 111 REVW---EAAKPVPARRQRRLFNDTKEAEKILHLFE 143
            E++   E +K  PA   R + ND +    + HL E
Sbjct: 213 YELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIE 248


>pdb|4E4M|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
 pdb|4E4M|B Chain B, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
 pdb|4E4M|D Chain D, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
 pdb|4E4M|E Chain E, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
 pdb|4F08|A Chain A, Discovery And Optimization Of C-2 Methyl
           Imidazo-Pyrrolopyridines As Potent And Orally
           Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
 pdb|4F08|B Chain B, Discovery And Optimization Of C-2 Methyl
           Imidazo-Pyrrolopyridines As Potent And Orally
           Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
 pdb|4F09|A Chain A, Discovery And Optimization Of C-2 Methyl
           Imidazo-Pyrrolopyridines As Potent And Orally
           Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
          Length = 302

 Score = 28.1 bits (61), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 15/96 (15%)

Query: 51  MSASLLSDMESFKAANPGAILEDFIRWYSPRDFIESSELDQYGQKKGSLSARMLLPGNTW 110
           ++  L  D E  K   PG   E  I WY+P    ES         K S+++ +   G   
Sbjct: 167 LTKVLPQDKEXXKVKEPG---ESPIFWYAPESLTES---------KFSVASDVWSFGVVL 214

Query: 111 REVW---EAAKPVPARRQRRLFNDTKEAEKILHLFE 143
            E++   E +K  PA   R + ND +    + HL E
Sbjct: 215 YELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIE 250


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.134    0.389 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,754,105
Number of Sequences: 62578
Number of extensions: 317273
Number of successful extensions: 634
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 633
Number of HSP's gapped (non-prelim): 19
length of query: 340
length of database: 14,973,337
effective HSP length: 99
effective length of query: 241
effective length of database: 8,778,115
effective search space: 2115525715
effective search space used: 2115525715
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)