BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9871
(340 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q642R9|RB3GP_XENLA Rab3 GTPase-activating protein catalytic subunit OS=Xenopus laevis
GN=rab3gap1 PE=2 SV=1
Length = 978
Score = 239 bits (610), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 136/335 (40%), Positives = 189/335 (56%), Gaps = 21/335 (6%)
Query: 23 TEDQIEEDAEFLLSLGTDLESSQLRAKLMSASLLSDMESFKAANPGAILEDFIRWYSPRD 82
T+D +EE +E L LGT E + LRA++ SA LLSDMESFKAANPG LEDF+RWYSPRD
Sbjct: 646 TDDLLEEQSEVLAKLGTSAEGAHLRARMQSACLLSDMESFKAANPGCCLEDFVRWYSPRD 705
Query: 83 FIESSELDQYGQK--KGSLSARMLLPGNTWREVWEAAKPVPARRQRRLFNDTKEAEKILH 140
+IE +D G K KG LSARM +P N W E WE AKP+PARRQRRLF+DTKEAEK+LH
Sbjct: 706 YIEEEVMDDKGNKIFKGELSARMKIPNNMWVEAWETAKPIPARRQRRLFDDTKEAEKVLH 765
Query: 141 LFECQSPGSVAVLLVPALIHGAVSRLLEAIHSVPVPSLGRMASHLIKRVEFATRCSEMEL 200
Q P + L+P +IH A+ +L E + +PS + +I R +
Sbjct: 766 YLAVQKPADLTRHLLPCVIHAALLKLKEEEAAEDIPSGRKAIKQIISHSSKVLRFPSPDD 825
Query: 201 KRYQDICSEIGQIEALVSQYHSLHHKLSPDNNDASTQQFLADLVMNPSSIIQVPEGP--- 257
K+ +D+ S+I +EA +++ SL K + D + S ++ DL S ++ PE P
Sbjct: 826 KKLEDVISQISNVEAAIARARSLKAKFAIDRCEKSEER--EDLEKFVSCLLDQPEVPIIG 883
Query: 258 --HGVIGKRMSQMFY-----------EAQKDTDVWKLPASPFSPLPSPACREFILRVVAP 304
G G + +MF E ++ + + + PSPA RE ILR P
Sbjct: 884 AGRGAAGTIIHKMFVQRALTLAPVEEEPKRSSSSDDRRQTSGTDFPSPAGRELILRTSVP 943
Query: 305 RPAPSSRPTPHKLTALIMAPDSLIMSGCFTQDTMF 339
RPAP S+ P ++ +++ D ++G F+ DT F
Sbjct: 944 RPAPYSKVLPQRMYSVLTKED-FRLTGAFSSDTSF 977
>sp|P69735|RB3GP_RAT Rab3 GTPase-activating protein catalytic subunit (Fragments)
OS=Rattus norvegicus GN=Rab3gap1 PE=1 SV=2
Length = 775
Score = 232 bits (591), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 136/337 (40%), Positives = 188/337 (55%), Gaps = 23/337 (6%)
Query: 23 TEDQIEEDAEFLLSLGTDLESSQLRAKLMSASLLSDMESFKAANPGAILEDFIRWYSPRD 82
TED +EE +E L LGT E + LRA++ SA LLSDMESFKAANPG LEDF+RWYSPRD
Sbjct: 441 TEDLLEEQSEVLAKLGTSAEGAHLRARMQSACLLSDMESFKAANPGCCLEDFVRWYSPRD 500
Query: 83 FIESSELDQYGQK--KGSLSARMLLPGNTWREVWEAAKPVPARRQRRLFNDTKEAEKILH 140
+IE D+ G KG LSARM +P N W E WE AKPVPARRQRRLF+DT+EAEK+LH
Sbjct: 501 YIEEEVTDEKGNVVLKGELSARMKIPSNMWVEAWETAKPVPARRQRRLFDDTREAEKVLH 560
Query: 141 LFECQSPGSVAVLLVPALIHGAVSRLLEAIHSVPVPSLGRMASHLIKRVEFATRCSEMEL 200
Q P +A L+P +IH AV ++ E +PS+ ++ +I R E
Sbjct: 561 YLAMQKPADLARHLLPCVIHAAVLKVKEEESLENIPSVKKIIKQIIAHSSKVLRFPSPED 620
Query: 201 KRYQDICSEIGQIEALVSQYHSLHHKLSP-----DNNDASTQQFLADLVMNPSSIIQVPE 255
K+ ++I +I +EA++++ SL K + ++F++ L+ P + V
Sbjct: 621 KKLEEIILQITTVEAIIARARSLKAKFGTEKCEHEEEKEDLERFVSCLLEQPE--VAVTG 678
Query: 256 GPHGVIGKRMSQMFYEAQKDTDV------WKLPASP-------FSPLPSPACREFILRVV 302
G G+ + ++F AQ+ V K P S P PA RE ILR
Sbjct: 679 AGRGHAGRIIHKLFVNAQRAAAVALPEEELKRSGCPEERRQTLVSDFPPPAGRELILRAT 738
Query: 303 APRPAPSSRPTPHKLTALIMAPDSLIMSGCFTQDTMF 339
PRPAP S+ P ++ +++ D ++G F+ DT F
Sbjct: 739 VPRPAPYSKALPQRMYSVLTKED-FRLAGAFSSDTSF 774
>sp|Q15042|RB3GP_HUMAN Rab3 GTPase-activating protein catalytic subunit OS=Homo sapiens
GN=RAB3GAP1 PE=1 SV=3
Length = 981
Score = 231 bits (589), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 135/337 (40%), Positives = 189/337 (56%), Gaps = 23/337 (6%)
Query: 23 TEDQIEEDAEFLLSLGTDLESSQLRAKLMSASLLSDMESFKAANPGAILEDFIRWYSPRD 82
TED +EE +E L LGT E + LRA++ SA LLSDMESFKAANPG LEDF+RWYSPRD
Sbjct: 647 TEDLLEEQSEVLAKLGTSAEGAHLRARMQSACLLSDMESFKAANPGCSLEDFVRWYSPRD 706
Query: 83 FIESSELDQYGQK--KGSLSARMLLPGNTWREVWEAAKPVPARRQRRLFNDTKEAEKILH 140
+IE +D+ G KG LSARM +P N W E WE AKP+PARRQRRLF+DT+EAEK+LH
Sbjct: 707 YIEEEVIDEKGNVVLKGELSARMKIPSNMWVEAWETAKPIPARRQRRLFDDTREAEKVLH 766
Query: 141 LFECQSPGSVAVLLVPALIHGAVSRLLEAIHSVPVPSLGRMASHLIKRVEFATRCSEMEL 200
Q P +A L+P +IH AV ++ E + S+ ++ +I E
Sbjct: 767 YLAIQKPADLARHLLPCVIHAAVLKVKEEESLENISSVKKIIKQIISHSSKVLHFPNPED 826
Query: 201 KRYQDICSEIGQIEALVSQYHSLHHKLSP-----DNNDASTQQFLADLVMNPSSIIQVPE 255
K+ ++I +I +EAL+++ SL K + ++F++ L+ P + V
Sbjct: 827 KKLEEIIHQITNVEALIARARSLKAKFGTEKCEQEEEKEDLERFVSCLLEQPE--VLVTG 884
Query: 256 GPHGVIGKRMSQMFYEAQKDT------DVWKLPASP-------FSPLPSPACREFILRVV 302
G G+ + ++F AQ+ + K SP S P PA REFILR
Sbjct: 885 AGRGHAGRIIHKLFVNAQRAAAMTPPEEELKRMGSPEERRQNSVSDFPPPAGREFILRTT 944
Query: 303 APRPAPSSRPTPHKLTALIMAPDSLIMSGCFTQDTMF 339
PRPAP S+ P ++ +++ D ++G F+ DT F
Sbjct: 945 VPRPAPYSKALPQRMYSVLTKED-FRLAGAFSSDTSF 980
>sp|Q80UJ7|RB3GP_MOUSE Rab3 GTPase-activating protein catalytic subunit OS=Mus musculus
GN=Rab3gap1 PE=2 SV=4
Length = 981
Score = 231 bits (589), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 135/338 (39%), Positives = 187/338 (55%), Gaps = 25/338 (7%)
Query: 23 TEDQIEEDAEFLLSLGTDLESSQLRAKLMSASLLSDMESFKAANPGAILEDFIRWYSPRD 82
TED +EE +E L LGT E + LRA++ SA LLSDMESFKAANPG LEDF+RWYSPRD
Sbjct: 647 TEDLLEEQSEVLAKLGTSAEGAHLRARMQSACLLSDMESFKAANPGCFLEDFVRWYSPRD 706
Query: 83 FIESSELDQYGQK--KGSLSARMLLPGNTWREVWEAAKPVPARRQRRLFNDTKEAEKILH 140
+IE D+ G KG LSARM +P N W E WE AKPVPARRQRRLF+DT+EAEK+LH
Sbjct: 707 YIEEEVTDEKGNVVLKGELSARMKIPSNMWVEAWETAKPVPARRQRRLFDDTREAEKVLH 766
Query: 141 LFECQSPGSVAVLLVPALIHGAVSRLLEAIHSVPVPSLGRMASHLIKRVEFATRCSEMEL 200
Q P +A L+P +IH AV ++ E +PS+ ++ +I E
Sbjct: 767 YLAMQKPADLARHLLPCVIHAAVLKVKEEESLENIPSVKKIIKQIIAHSSKVLHFPNPED 826
Query: 201 KRYQDICSEIGQIEALVSQYHSLHHKLSP-----DNNDASTQQFLADLVMNPSSIIQVPE 255
K+ ++I +I +EA++++ SL K + ++F++ L+ P + V
Sbjct: 827 KKLEEIILQITTVEAIIARARSLKAKFGTEKCEHEEEKEGLERFVSCLLEQPE--VSVTG 884
Query: 256 GPHGVIGKRMSQMFYEAQKDTDVWKLPASPF--------------SPLPSPACREFILRV 301
G G+ + ++F AQ+ V LP S P PA RE ILR
Sbjct: 885 AGRGHAGRIIHKLFVNAQRAAAV-ALPEEELKKSGCPEERRQTLVSDFPPPAGRELILRA 943
Query: 302 VAPRPAPSSRPTPHKLTALIMAPDSLIMSGCFTQDTMF 339
PRPAP S+ P ++ +++ D ++G F+ DT F
Sbjct: 944 TVPRPAPYSKALPQRMYSVLTKED-FRLAGAFSSDTSF 980
>sp|Q6NUV0|RB3GP_DANRE Rab3 GTPase-activating protein catalytic subunit OS=Danio rerio
GN=rab3gap1 PE=2 SV=2
Length = 969
Score = 218 bits (554), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 126/335 (37%), Positives = 185/335 (55%), Gaps = 19/335 (5%)
Query: 23 TEDQIEEDAEFLLSLGTDLESSQLRAKLMSASLLSDMESFKAANPGAILEDFIRWYSPRD 82
TED +EE +E L LGT E + LRA++ SA LLSDMESFKAANPG L DF+RWYSPRD
Sbjct: 635 TEDLLEEQSEVLAKLGTSAEGAHLRARMQSACLLSDMESFKAANPGCTLLDFVRWYSPRD 694
Query: 83 FIESSELDQYG--QKKGSLSARMLLPGNTWREVWEAAKPVPARRQRRLFNDTKEAEKILH 140
++E D G + +G LSARM +PGN W E WE A+ PARRQ+RLF+DTKEAEK+LH
Sbjct: 695 YVEEQVTDADGRVEVRGELSARMKIPGNMWVEAWETARATPARRQKRLFDDTKEAEKVLH 754
Query: 141 LFECQSPGSVAVLLVPALIHGAVSRLLEAIHSVPVPSLGRMASHLIKRVEFATRCSEMEL 200
Q P + L+P ++H A+ ++ E + +PS+ + R E
Sbjct: 755 YLALQKPSELTRHLLPCVLHAALLKIKEEESAEDLPSVRSSLQQISSSASKILRHPNPEF 814
Query: 201 KRYQDICSEIGQIEALVSQYHSLHHKLSPDNNDASTQQFLADLVMNPSSIIQVPE----- 255
K+ +D+ S++ +EA++++ SL K + ++ +L SS+++ PE
Sbjct: 815 KKLEDVISQLMAVEAVIARARSLKAKFGVCGGEREREEDGDELERFVSSLLEEPEVCVSG 874
Query: 256 GPHGVIGKRMSQMFYEAQK-------DTDVWKLPAS----PFSPLPSPACREFILRVVAP 304
G G + ++F +Q+ + + + S F P PA RE +LR P
Sbjct: 875 AGRGPAGNVIHKLFVSSQRAALLAPMEEETLRSGGSDDRKAFPDFPPPAGREILLRTCVP 934
Query: 305 RPAPSSRPTPHKLTALIMAPDSLIMSGCFTQDTMF 339
RPAP S+ P +L ++M D ++G F+ DT F
Sbjct: 935 RPAPYSKALPQRLFCVLMR-DEFRLAGAFSSDTSF 968
>sp|Q9VQ26|RB3GP_DROME Rab3 GTPase-activating protein catalytic subunit OS=Drosophila
melanogaster GN=CG31935 PE=1 SV=2
Length = 916
Score = 151 bits (381), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 78/159 (49%), Positives = 105/159 (66%), Gaps = 5/159 (3%)
Query: 20 VIKTEDQIEEDAEFLLSLGTDLESSQLRAKLMSASLLSDMESFKAANPGAILEDFIRWYS 79
V KTEDQ+++DAE +L LG S L ++M SLLSDME+FKAANP I+EDFIRWYS
Sbjct: 608 VPKTEDQLQDDAEVMLKLGP---GSGLTTQMMCTSLLSDMEAFKAANPRGIMEDFIRWYS 664
Query: 80 PRDFIESSELDQYGQKKGSLSARMLLPGNTWREVWEAAKPVPARRQRRLFNDTKEAEKIL 139
P+D+ E + D+ GQ K LS RM GNTW++VWE A+ VP RQ+RLF+DT EA K+L
Sbjct: 665 PKDWEEVT--DELGQVKHQLSIRMTTEGNTWQKVWEQAQAVPVSRQKRLFDDTNEALKVL 722
Query: 140 HLFECQSPGSVAVLLVPALIHGAVSRLLEAIHSVPVPSL 178
H E + + L V L+H A+ +L + + + + L
Sbjct: 723 HYLETRKMHEIYNLTVIPLLHSAILKLADILSNAELEDL 761
>sp|Q93538|RB3GP_CAEEL Rab3 GTPase-activating protein catalytic subunit OS=Caenorhabditis
elegans GN=rbg-1 PE=3 SV=1
Length = 915
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/146 (39%), Positives = 79/146 (54%), Gaps = 14/146 (9%)
Query: 23 TEDQIEEDAEFLLSLGTDLESSQLRAKLMSASLLSDMESFKAANPGAILEDFIRWYSPRD 82
T++ I+ E L SL + R L + SDM+SFKAAN GA+ DF+RW+SP+D
Sbjct: 602 TDEMIDARNEHLFSL-----DEEDRVHLQMELVKSDMQSFKAANAGAVFADFLRWHSPKD 656
Query: 83 FIESSELDQYGQKKGSLSARMLLPGNTWREVWEAAKPVPARRQRRLFNDTKEAEKILHLF 142
Y +K ++S RML+ N W WEAA P+P Q R+FNDTK AE+IL +F
Sbjct: 657 ---------YDEKTNTISERMLISNNVWVRSWEAALPIPVANQARIFNDTKIAEEILEIF 707
Query: 143 ECQSPGSVAVLLVPALIHGAVSRLLE 168
+ V + P + + RL E
Sbjct: 708 NNATLDQVREWMKPTVFAATLERLTE 733
>sp|Q7RVN2|RS27_NEUCR 40S ribosomal protein S27 OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rps-27
PE=3 SV=1
Length = 82
Score = 35.4 bits (80), Expect = 0.69, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 298 ILRVVAPRPAPSSRPTPHKLTALIMAPDSLIMS----GCFTQDTMF 339
+L V P+P+S HKL L+ AP S M GCFT T+F
Sbjct: 2 VLAVDLLNPSPASEARKHKLKTLVPAPRSFFMDVKCPGCFTITTVF 47
>sp|P29618|CDKA1_ORYSJ Cyclin-dependent kinase A-1 OS=Oryza sativa subsp. japonica
GN=CDKA-1 PE=1 SV=1
Length = 294
Score = 33.5 bits (75), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 55/137 (40%), Gaps = 30/137 (21%)
Query: 112 EVWEAAKPVPARRQRRLFNDTKEAEKILHLFECQSPGSVAVL---LVPALIHGAVSRLLE 168
++ E V R + ++ N+T +KI E + S A+ L+ + HG + RL +
Sbjct: 9 KIGEGTYGVVYRARDKVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMHHGNIVRLHD 68
Query: 169 AIHSVPVPSLGRMASHLIKRVEFATRCSEMELKRYQDICSEIGQIEALVSQY-------- 220
IHS KR+ +++LK++ D C E + L+ Y
Sbjct: 69 VIHSE-------------KRIYLVFEYLDLDLKKFMDSCPEFAKNPTLIKSYLYQILRGV 115
Query: 221 ---HS---LHHKLSPDN 231
HS LH L P N
Sbjct: 116 AYCHSHRVLHRDLKPQN 132
>sp|A0Q8M6|TRPB_FRATN Tryptophan synthase beta chain OS=Francisella tularensis subsp.
novicida (strain U112) GN=trpB PE=3 SV=1
Length = 396
Score = 33.5 bits (75), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 176 PSLGRMASHL--IKRVEFATRCSEMELKRYQDICSEIGQIEALVSQYHSLHHKLSPDNND 233
PS+G +HL I R E+A+ + L ++ +C + G I AL S H+L H L D
Sbjct: 306 PSVGPQHAHLLAIGRAEYASATDDEALDAFKLLCKKEGIIPALESS-HALAHALKLAYED 364
Query: 234 ASTQQFL 240
+ +Q L
Sbjct: 365 PNKEQLL 371
>sp|Q8GMR7|SYS_SYNE7 Serine--tRNA ligase OS=Synechococcus elongatus (strain PCC 7942)
GN=serS PE=3 SV=4
Length = 428
Score = 33.5 bits (75), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 7/81 (8%)
Query: 223 LHHKLSPDNNDASTQQFLADLVMNPSSIIQVPEGPHGVIGKRMSQMFYEAQK--DTDVWK 280
L+ + PD+++A+ QQ LA N +I+Q E P+ I + + AQK D +VW
Sbjct: 289 LYQFVHPDHSEAAHQQLLA----NAEAILQALELPYRTIELCTGDLGFSAQKTYDIEVWL 344
Query: 281 LPASPFSPLPSPA-CREFILR 300
A + + S + C +F R
Sbjct: 345 PSAGRYREISSCSNCGDFQAR 365
>sp|Q7MGZ2|GPMI_VIBVY 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
OS=Vibrio vulnificus (strain YJ016) GN=gpmI PE=3 SV=2
Length = 510
Score = 33.1 bits (74), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 48/102 (47%), Gaps = 16/102 (15%)
Query: 134 EAEKILHLFECQSPGSVAVLLVPALIHGAVSRLLEAIHSVPVPSLGRMASH-LIKRVEFA 192
+AEK +H+ SPG V H +L A+ ++ H + +
Sbjct: 107 KAEKAVHIMGLMSPGGV---------HSHEDHILAAVEMAAERGAEKIYLHCFLDGRDTP 157
Query: 193 TRCSEMELKRYQDICSEIGQ--IEALVSQYHSLHHKLSPDNN 232
R +E L+R+QD+ +++G+ + +LV +Y+++ DNN
Sbjct: 158 PRSAEGSLQRFQDLFAKLGKGRVASLVGRYYAMDR----DNN 195
>sp|Q8DCW1|GPMI_VIBVU 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
OS=Vibrio vulnificus (strain CMCP6) GN=gpmI PE=3 SV=2
Length = 510
Score = 33.1 bits (74), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 48/102 (47%), Gaps = 16/102 (15%)
Query: 134 EAEKILHLFECQSPGSVAVLLVPALIHGAVSRLLEAIHSVPVPSLGRMASH-LIKRVEFA 192
+AEK +H+ SPG V H +L A+ ++ H + +
Sbjct: 107 KAEKAVHIMGLMSPGGV---------HSHEDHILAAVEMAAERGAEKIYLHCFLDGRDTP 157
Query: 193 TRCSEMELKRYQDICSEIGQ--IEALVSQYHSLHHKLSPDNN 232
R +E L+R+QD+ +++G+ + +LV +Y+++ DNN
Sbjct: 158 PRSAEGSLQRFQDLFAKLGKGRVASLVGRYYAMDR----DNN 195
>sp|Q5A360|SIL1_CANAL Nucleotide exchange factor SIL1 OS=Candida albicans (strain SC5314
/ ATCC MYA-2876) GN=SIL1 PE=3 SV=1
Length = 414
Score = 32.3 bits (72), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 53/126 (42%), Gaps = 11/126 (8%)
Query: 102 RMLLPGNTWREVWEAAKPVPARRQRRLFNDTKEAE-KILHLFECQSPGSVAVLLVPALIH 160
++ +P N W+ + + + +P RL DT E E K++ E P V+ H
Sbjct: 41 KLFVPTNEWQTI-KPGQDIPPGLHVRLNIDTLEKEAKLMSADEKDEPVQEVVVGGELQDH 99
Query: 161 G--AVSRLLEAIHSVPVPSLGRMASHLIKRVEFATRCSEMELKRYQDICSEIGQIEALVS 218
A++ L+ +H P + + +H T+ S+ +L + CSEI + S
Sbjct: 100 SREAITENLQKLHESKHPEVKQEHAH-------RTKVSQGDLSNFDAACSEIESFKPHES 152
Query: 219 QYHSLH 224
LH
Sbjct: 153 DVERLH 158
>sp|A7MX70|GPMI_VIBHB 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=gpmI
PE=3 SV=1
Length = 510
Score = 32.3 bits (72), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 47/102 (46%), Gaps = 16/102 (15%)
Query: 134 EAEKILHLFECQSPGSVAVLLVPALIHGAVSRLLEAIHSVPVPSLGRMASH-LIKRVEFA 192
+AEK +H+ SPG V H + A+ ++ H + +
Sbjct: 107 KAEKAVHIMGLMSPGGV---------HSHEDHIYAAVEMAAARGAEKIYLHCFLDGRDTP 157
Query: 193 TRCSEMELKRYQDICSEIGQ--IEALVSQYHSLHHKLSPDNN 232
R +E L+R+QD+ +++G+ + +LV +Y+++ DNN
Sbjct: 158 PRSAENSLQRFQDLFAKLGKGRVASLVGRYYAMDR----DNN 195
>sp|Q87KZ5|GPMI_VIBPA 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD
2210633) GN=gpmI PE=3 SV=1
Length = 510
Score = 32.3 bits (72), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 47/102 (46%), Gaps = 16/102 (15%)
Query: 134 EAEKILHLFECQSPGSVAVLLVPALIHGAVSRLLEAIHSVPVPSLGRMASH-LIKRVEFA 192
+AEK +H+ SPG V H + A+ ++ H + +
Sbjct: 107 KAEKAVHIMGLMSPGGV---------HSHEDHIYAAVEMAAARGAEKIYLHCFLDGRDTP 157
Query: 193 TRCSEMELKRYQDICSEIGQ--IEALVSQYHSLHHKLSPDNN 232
R +E L+R+QD+ +++G+ + +LV +Y+++ DNN
Sbjct: 158 PRSAENSLQRFQDLFAKLGKGRVASLVGRYYAMDR----DNN 195
>sp|A6VYJ1|SECA_MARMS Protein translocase subunit SecA OS=Marinomonas sp. (strain MWYL1)
GN=secA PE=3 SV=1
Length = 900
Score = 32.0 bits (71), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 16/91 (17%)
Query: 181 MASHLIKRVEFATRCSEMELKRYQDICSEIGQIEALVSQYHSLHHKLSPDNNDASTQQFL 240
M +IK++ T+ ++ E+KRY+ I ++I Q+E HKLS D+ T +F
Sbjct: 1 MLGTVIKKI-VGTK-NDREVKRYRKIVAQINQLE-------ESFHKLSDDDLSGKTSEFR 51
Query: 241 ADLVMN-------PSSIIQVPEGPHGVIGKR 264
L P + V EG V+G R
Sbjct: 52 DRLAKGESLESILPEAFAVVREGSSRVMGMR 82
>sp|Q8EJP9|COAE_SHEON Dephospho-CoA kinase OS=Shewanella oneidensis (strain MR-1) GN=coaE
PE=3 SV=1
Length = 205
Score = 32.0 bits (71), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 27/136 (19%)
Query: 122 ARRQRRLFNDTKEAE---KILH-------LFECQSPGS-VAVLLVPALIHGAVSRLLEAI 170
A+ ++R+FND +E + ++LH L + + S +++VP L + RL+
Sbjct: 69 AKLRQRVFNDEQERQWLNQLLHPMIRQEMLLQVEKATSDYVIMVVPLLFENGLDRLVHRT 128
Query: 171 HSVPV-PSLGRMASHLIKRVE---------FATRCSEME-LKRYQDICSEIGQIEALVSQ 219
V + P L S ++R ++CS E L R DI G+I L +
Sbjct: 129 LVVDISPEL--QISRTVQRDNVDATQVNNIINSQCSRSEKLARADDIIDNHGEISRLKRE 186
Query: 220 YHSLHHK---LSPDNN 232
H+LH + LS ++N
Sbjct: 187 VHALHQRYLQLSGNHN 202
>sp|C3LR68|GPMI_VIBCM 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
OS=Vibrio cholerae serotype O1 (strain M66-2) GN=gpmI
PE=3 SV=1
Length = 510
Score = 32.0 bits (71), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 16/101 (15%)
Query: 135 AEKILHLFECQSPGSVAVLLVPALIHGAVSRLLEAIHSVPVPSLGRMASH-LIKRVEFAT 193
A K +HL SPG V H + A+ ++ H + +
Sbjct: 108 AGKAVHLMGLMSPGGV---------HSHEDHIYAAVEMAAARGAEKIYLHCFLDGRDTPP 158
Query: 194 RCSEMELKRYQDICSEIGQ--IEALVSQYHSLHHKLSPDNN 232
R +E LKR+QD+ +++G+ I ++V +Y+++ DNN
Sbjct: 159 RSAEASLKRFQDLFAKLGKGRIASIVGRYYAMDR----DNN 195
>sp|Q9KV22|GPMI_VIBCH 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El
Tor Inaba N16961) GN=gpmI PE=3 SV=1
Length = 510
Score = 32.0 bits (71), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 16/101 (15%)
Query: 135 AEKILHLFECQSPGSVAVLLVPALIHGAVSRLLEAIHSVPVPSLGRMASH-LIKRVEFAT 193
A K +HL SPG V H + A+ ++ H + +
Sbjct: 108 AGKAVHLMGLMSPGGV---------HSHEDHIYAAVEMAAARGAEKIYLHCFLDGRDTPP 158
Query: 194 RCSEMELKRYQDICSEIGQ--IEALVSQYHSLHHKLSPDNN 232
R +E LKR+QD+ +++G+ I ++V +Y+++ DNN
Sbjct: 159 RSAEASLKRFQDLFAKLGKGRIASIVGRYYAMDR----DNN 195
>sp|A5F3N4|GPMI_VIBC3 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
OS=Vibrio cholerae serotype O1 (strain ATCC 39541 /
Ogawa 395 / O395) GN=gpmI PE=3 SV=1
Length = 510
Score = 32.0 bits (71), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 16/101 (15%)
Query: 135 AEKILHLFECQSPGSVAVLLVPALIHGAVSRLLEAIHSVPVPSLGRMASH-LIKRVEFAT 193
A K +HL SPG V H + A+ ++ H + +
Sbjct: 108 AGKAVHLMGLMSPGGV---------HSHEDHIYAAVEMAAARGAEKIYLHCFLDGRDTPP 158
Query: 194 RCSEMELKRYQDICSEIGQ--IEALVSQYHSLHHKLSPDNN 232
R +E LKR+QD+ +++G+ I ++V +Y+++ DNN
Sbjct: 159 RSAEASLKRFQDLFAKLGKGRIASIVGRYYAMDR----DNN 195
>sp|B2V7L9|RPOC_SULSY DNA-directed RNA polymerase subunit beta' OS=Sulfurihydrogenibium
sp. (strain YO3AOP1) GN=rpoC PE=3 SV=1
Length = 1579
Score = 31.6 bits (70), Expect = 8.5, Method: Composition-based stats.
Identities = 27/112 (24%), Positives = 54/112 (48%), Gaps = 12/112 (10%)
Query: 189 VEFATRCSEMELKRYQDICSEIGQIEALVSQYHSLHHKLSPDNNDASTQQFLADLVMNPS 248
+E A + SE+ L R+ DI +I+ ++SQ + + + P ++D Q ++NP
Sbjct: 250 IEIARKFSEVGL-RFGDIEPTEKEIDVIISQGYYI--VIDPASSDLKFGQ-----IINPE 301
Query: 249 SIIQVPEGPHGVIGKRMSQMFYEAQKDTDVWKLPASPFSPLPSPACREFILR 300
++ +PEG + G + Y+A ++ K+ P + + R IL+
Sbjct: 302 NVDSLPEGVIALTGVEALEKLYKAYRE----KVKEIPIFEVIKESVRNVILK 349
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 123,688,749
Number of Sequences: 539616
Number of extensions: 5178490
Number of successful extensions: 14208
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 14183
Number of HSP's gapped (non-prelim): 35
length of query: 340
length of database: 191,569,459
effective HSP length: 118
effective length of query: 222
effective length of database: 127,894,771
effective search space: 28392639162
effective search space used: 28392639162
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)