Query psy9871
Match_columns 340
No_of_seqs 98 out of 115
Neff 4.7
Searched_HMMs 29240
Date Fri Aug 16 21:46:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9871.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9871hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1t3j_A Mitofusin 1; coiled coi 38.8 18 0.00062 29.2 2.6 42 201-244 54-95 (96)
2 2xns_C RGS14, regulator of G-p 31.2 11 0.00037 25.8 0.1 8 71-78 33-40 (40)
3 3iol_B Glucagon; receptor-liga 17.0 42 0.0014 21.6 0.8 21 55-78 6-26 (31)
4 1rbl_M Ribulose 1,5 bisphospha 16.0 85 0.0029 25.7 2.6 21 19-39 17-37 (109)
5 1svd_M Ribulose bisphosphate c 15.8 94 0.0032 25.5 2.8 21 19-39 19-39 (110)
6 3zxw_B Ribulose bisphosphate c 13.8 1.1E+02 0.0036 25.5 2.7 51 19-69 16-83 (118)
7 4f0h_B Ribulose bisphosphate c 13.5 1.1E+02 0.0039 26.0 2.8 51 19-69 11-78 (138)
8 2l2l_B Methyl-CPG-binding doma 12.1 3.3E+02 0.011 18.2 4.2 26 19-53 4-29 (36)
9 1bwv_S Rubisco, protein (ribul 12.0 1.3E+02 0.0046 25.6 2.8 51 19-69 11-78 (138)
10 4e17_B Catenin alpha-1; four h 11.9 1.9E+02 0.0065 19.8 3.0 25 212-245 13-37 (40)
No 1
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=38.76 E-value=18 Score=29.21 Aligned_cols=42 Identities=17% Similarity=0.297 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHHHh
Q psy9871 201 KRYQDICSEIGQIEALVSQYHSLHHKLSPDNNDASTQQFLADLV 244 (340)
Q Consensus 201 ~~~~~l~~~i~~vE~~v~~a~SL~~Kf~~~~~~~~l~~~v~~ll 244 (340)
.++.++=..|..+|.+...+.-|+.|..- =..+|+.|-+.++
T Consensus 54 ~EI~~L~~eI~~LE~iqs~aK~LRnKA~~--L~~eLe~F~~~yL 95 (96)
T 1t3j_A 54 EEIARLSKEIDQLEKMQNNSKLLRNKAVQ--LESELENFSKQFL 95 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHH--HHHHHHHHHHHhc
Confidence 67889999999999999999999999842 2366777777765
No 2
>2xns_C RGS14, regulator of G-protein signaling 14; hydrolase-peptide complex, ADP-ribosylation, arginine finger binding, lipoprotein, nucleotide-binding; HET: GDP SRT; 3.41A {Homo sapiens}
Probab=31.20 E-value=11 Score=25.79 Aligned_cols=8 Identities=63% Similarity=1.510 Sum_probs=6.6
Q ss_pred hhhhhhhh
Q psy9871 71 LEDFIRWY 78 (340)
Q Consensus 71 ~eDFVrW~ 78 (340)
+.||.||+
T Consensus 33 l~df~r~~ 40 (40)
T 2xns_C 33 LRDFDRWF 40 (40)
T ss_dssp HHHHTCC-
T ss_pred hHHHHhcC
Confidence 79999996
No 3
>3iol_B Glucagon; receptor-ligand complex, cell membrane, disulfide bond, G-PR coupled receptor, glycoprotein, membrane, receptor, transdu transmembrane; HET: 10M; 2.10A {Homo sapiens} PDB: 1d0r_A
Probab=16.99 E-value=42 Score=21.60 Aligned_cols=21 Identities=33% Similarity=0.754 Sum_probs=14.0
Q ss_pred hHhhHHHhhhcCCCcchhhhhhhh
Q psy9871 55 LLSDMESFKAANPGAILEDFIRWY 78 (340)
Q Consensus 55 LlSDM~aFKaANpg~v~eDFVrW~ 78 (340)
..||+..|.. .-+..|||.|.
T Consensus 6 ftsD~s~~L~---~~~ak~Fv~wL 26 (31)
T 3iol_B 6 FTSDVSSYLE---GQAAKEFIAWL 26 (31)
T ss_dssp CHHHHHHHHH---HHHHHHHHHHH
T ss_pred eeHHHHHHHH---HHHHHHHHHHH
Confidence 4566666653 24568999997
No 4
>1rbl_M Ribulose 1,5 bisphosphate carboxylase/oxygenase ( chain); lyase(carbon-carbon), lyase; HET: CAP; 2.20A {Synechococcus elongatus} SCOP: d.73.1.1 PDB: 1rsc_M*
Probab=16.00 E-value=85 Score=25.68 Aligned_cols=21 Identities=19% Similarity=0.387 Sum_probs=18.0
Q ss_pred CCCCChHHHHHHHHHHHhcCC
Q psy9871 19 IVIKTEDQIEEDAEFLLSLGT 39 (340)
Q Consensus 19 ~~p~TeD~l~e~~~~l~~lg~ 39 (340)
-||||+++|.+|-+.+.+-|=
T Consensus 17 LP~lt~eqI~kQI~Yll~qGw 37 (109)
T 1rbl_M 17 LPPLSDRQIAAQIEYMIEQGF 37 (109)
T ss_dssp SSCCCHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHCCC
Confidence 378999999999999988764
No 5
>1svd_M Ribulose bisphosphate carboxylase small chain; beta-alpha-barrel, lyase; 1.80A {Halothiobacillus neapolitanus} SCOP: d.73.1.1
Probab=15.80 E-value=94 Score=25.47 Aligned_cols=21 Identities=10% Similarity=0.267 Sum_probs=18.3
Q ss_pred CCCCChHHHHHHHHHHHhcCC
Q psy9871 19 IVIKTEDQIEEDAEFLLSLGT 39 (340)
Q Consensus 19 ~~p~TeD~l~e~~~~l~~lg~ 39 (340)
-||||+++|.+|-+.+.+-|=
T Consensus 19 LP~lt~eqI~kQV~Yll~qGw 39 (110)
T 1svd_M 19 LPPMNAERIRAQIKYAIAQGW 39 (110)
T ss_dssp SCCCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHHHCCC
Confidence 378999999999999998774
No 6
>3zxw_B Ribulose bisphosphate carboxylase small chain; CO2/O2 specificity, carbon dioxide fixation, photosynthesis, thermostability; HET: KCX CAP; 2.10A {Thermosynechococcus elongatus} PDB: 2ybv_B*
Probab=13.85 E-value=1.1e+02 Score=25.48 Aligned_cols=51 Identities=12% Similarity=0.277 Sum_probs=31.4
Q ss_pred CCCCChHHHHHHHHHHHhcCCchh-----hHHHHHHH------------HHHhhHhhHHHhhhcCCCc
Q psy9871 19 IVIKTEDQIEEDAEFLLSLGTDLE-----SSQLRAKL------------MSASLLSDMESFKAANPGA 69 (340)
Q Consensus 19 ~~p~TeD~l~e~~~~l~~lg~~~~-----~~~~r~~m------------qs~~LlSDM~aFKaANpg~ 69 (340)
-||||+++|.+|-+.|.+-|=... ..+.|.+- ..+..|...++-++||||+
T Consensus 16 LP~Lt~eqI~kQV~yll~qGw~~~lE~~d~~~~~~~yW~mWklPmf~~~d~~~Vl~Ele~C~k~~p~~ 83 (118)
T 3zxw_B 16 LPPLSDAQIARQIQYAIDQGYHPCVEFNETSNAEIRYWTMWKLPLFNCTNAQDVLNEVQQCRSEYPNC 83 (118)
T ss_dssp SCCCCHHHHHHHHHHHHHHTCEEEEEEESCCCTTCCCCEEESSCCTTCCCHHHHHHHHHHHHHHCTTS
T ss_pred CCCCCHHHHHHHHHHHHhCCCeeEEEeccCCCcccCEEeecccCCcCCCCHHHHHHHHHHHHHHCCCc
Confidence 468999999999999987663210 00111100 1245677777777777774
No 7
>4f0h_B Ribulose bisphosphate carboxylase small chain; alpha beta domain, catalytic domain TIM barrel, carboxylase/oxygenase, nitrosylation; 1.96A {Galdieria sulphuraria} PDB: 4f0k_B 4f0m_B 1iwa_B 1bwv_S*
Probab=13.47 E-value=1.1e+02 Score=26.01 Aligned_cols=51 Identities=16% Similarity=0.261 Sum_probs=34.7
Q ss_pred CCCCChHHHHHHHHHHHhcCCch-----hhHHHHHH--H----------HHHhhHhhHHHhhhcCCCc
Q psy9871 19 IVIKTEDQIEEDAEFLLSLGTDL-----ESSQLRAK--L----------MSASLLSDMESFKAANPGA 69 (340)
Q Consensus 19 ~~p~TeD~l~e~~~~l~~lg~~~-----~~~~~r~~--m----------qs~~LlSDM~aFKaANpg~ 69 (340)
-||||+|+|.+|-+.+.+-|=.. +..+.|.+ - -.+..|...++-++||||+
T Consensus 11 LP~ltd~qI~kQI~YlL~qGw~~~iEf~d~~~~r~~yW~mWkLPmFg~~d~~~Vl~Ele~C~k~~p~~ 78 (138)
T 4f0h_B 11 LPDLTDEQIKKQIDYMISKKLAIGIEYTNDIHPRNSFWEMWGLPLFEVTDPAPVLFEINACRKAKSNF 78 (138)
T ss_dssp SCCCCHHHHHHHHHHHHHTTCEEEEEEESCCCTTCCCCEESSCCBCSCCSHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCHHHHHHHHHHHHhCCCEEEEEeCCCCCCcCCEEeecCCCCcCCCCHHHHHHHHHHHHHHCCCC
Confidence 37899999999999999876422 11111211 0 1357788888889999886
No 8
>2l2l_B Methyl-CPG-binding domain protein 2; DNA methylation, coiled-coil, NURD, MBD2, P66alpha, transfer; NMR {Homo sapiens}
Probab=12.08 E-value=3.3e+02 Score=18.17 Aligned_cols=26 Identities=31% Similarity=0.406 Sum_probs=20.4
Q ss_pred CCCCChHHHHHHHHHHHhcCCchhhHHHHHHHHHH
Q psy9871 19 IVIKTEDQIEEDAEFLLSLGTDLESSQLRAKLMSA 53 (340)
Q Consensus 19 ~~p~TeD~l~e~~~~l~~lg~~~~~~~~r~~mqs~ 53 (340)
+...||+.|..|++-+.. .|.|+|-+
T Consensus 4 ~~~Vte~DIr~QE~rV~~---------aR~rL~ea 29 (36)
T 2l2l_B 4 AFIVTDEDIRKQEERVQQ---------VRKKLEEA 29 (36)
T ss_dssp CCCCCHHHHHHHHHHHHH---------HHHHHHHH
T ss_pred eeeeCHHHHHHHHHHHHH---------HHHHHHHH
Confidence 456899999999988753 78888754
No 9
>1bwv_S Rubisco, protein (ribulose bisphosphate carboxylase); carbon dioxide fixation, complex (rubisco-reaction intermedi high specificity factor; HET: KCX CAP; 2.40A {Galdieria partita} SCOP: d.73.1.1 PDB: 1iwa_B
Probab=12.04 E-value=1.3e+02 Score=25.55 Aligned_cols=51 Identities=16% Similarity=0.266 Sum_probs=33.3
Q ss_pred CCCCChHHHHHHHHHHHhcCCchh-----hHHHHHHH------------HHHhhHhhHHHhhhcCCCc
Q psy9871 19 IVIKTEDQIEEDAEFLLSLGTDLE-----SSQLRAKL------------MSASLLSDMESFKAANPGA 69 (340)
Q Consensus 19 ~~p~TeD~l~e~~~~l~~lg~~~~-----~~~~r~~m------------qs~~LlSDM~aFKaANpg~ 69 (340)
-||||+|+|.+|-+.+.+-|=... ..+.|.+- -.+..|...++-++||||+
T Consensus 11 LP~ltdeqI~kQI~Yll~qGw~p~iEf~d~~~~r~~yW~mWkLPmF~~td~~~Vl~Ele~C~k~~p~~ 78 (138)
T 1bwv_S 11 LPDLTDEQIKKQIDYMISKKLAIGIEYTNDIHPRNAYWEIWGLPLFDVTDPAAVLFEINACRKARSNF 78 (138)
T ss_dssp SCCCCHHHHHHHHHHHHHTTCEEEEEEESCCCTTCCCCEECSSCBCSCCCHHHHHHHHHHHHHHCTTS
T ss_pred CCCCCHHHHHHHHHHHHHCCCeeeEEecCCCCCccCEEeccCCCCcCCCCHHHHHHHHHHHHHHCCCC
Confidence 378999999999999988774321 11112110 1356777788888888875
No 10
>4e17_B Catenin alpha-1; four helix bundle, cell adhesion; 2.30A {Mus musculus}
Probab=11.91 E-value=1.9e+02 Score=19.78 Aligned_cols=25 Identities=20% Similarity=0.422 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHhhhcCCCCCchHHHHHHHHHhh
Q psy9871 212 QIEALVSQYHSLHHKLSPDNNDASTQQFLADLVM 245 (340)
Q Consensus 212 ~vE~~v~~a~SL~~Kf~~~~~~~~l~~~v~~ll~ 245 (340)
+=|++|+.++++++-| +.+++.|+.
T Consensus 13 rkerIv~eCnavrqAL---------QdLlseY~~ 37 (40)
T 4e17_B 13 RRERIVAECNAVRQAL---------QDLLSEYMG 37 (40)
T ss_dssp HHHHHHHHHHHHHHHH---------HHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHH---------HHHHHHHhc
Confidence 4467788888888755 557777664
Done!