Query psy9871
Match_columns 340
No_of_seqs 98 out of 115
Neff 4.7
Searched_HMMs 13730
Date Fri Aug 16 21:47:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9871.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/9871hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1s7oa_ a.4.13.3 (A:) Hypothet 52.9 30 0.0022 26.0 8.1 31 138-168 26-62 (106)
2 d1xsva_ a.4.13.3 (A:) Hypothet 28.6 60 0.0044 24.2 6.2 17 138-154 28-44 (106)
3 d1m1eb_ a.161.1.1 (B:) beta-ca 20.0 9.2 0.00067 27.4 -0.3 22 54-75 24-48 (70)
4 d2pq3a1 a.39.1.5 (A:3-75) Calm 17.9 30 0.0022 23.2 2.1 59 22-80 2-72 (73)
5 d1gk8i_ d.73.1.1 (I:) Ribulose 17.8 36 0.0026 26.8 2.8 21 19-39 18-38 (126)
6 d1wdds_ d.73.1.1 (S:) Ribulose 15.5 44 0.0032 26.0 2.8 21 19-39 18-38 (122)
7 d1svdm1 d.73.1.1 (M:3-110) Rib 15.1 47 0.0034 25.2 2.8 51 19-69 17-84 (108)
8 d1bxni_ d.73.1.1 (I:) Ribulose 13.2 52 0.0038 25.8 2.6 51 19-69 11-78 (129)
9 d1rbli_ d.73.1.1 (I:) Ribulose 13.1 54 0.0039 24.9 2.6 21 19-39 17-37 (109)
10 d1allb_ a.1.1.3 (B:) Allophyco 11.4 1.6E+02 0.012 23.1 5.3 60 182-248 5-64 (161)
No 1
>d1s7oa_ a.4.13.3 (A:) Hypothetical protein SPy1201 {Streptococcus pyogenes [TaxId: 1314]}
Probab=52.90 E-value=30 Score=25.98 Aligned_cols=31 Identities=19% Similarity=-0.050 Sum_probs=21.7
Q ss_pred HHHHHhcCChHHHHHHH------HHHHHHHHHHHHhh
Q psy9871 138 ILHLFECQSPGSVAVLL------VPALIHGAVSRLLE 168 (340)
Q Consensus 138 vLh~Let~~p~~l~~ql------l~~~l~aa~~~l~~ 168 (340)
+|+|++.++..||++.| +-..++-|...|.+
T Consensus 26 ~L~y~~~ls~~EIA~~lgiS~~aV~~~l~RA~~~L~~ 62 (106)
T d1s7oa_ 26 ELYYADDYSLAEIADEFGVSRQAVYDNIKRTEKILET 62 (106)
T ss_dssp HHHHHTCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 79999999999998864 34444445555543
No 2
>d1xsva_ a.4.13.3 (A:) Hypothetical protein SAV1236 {Staphylococcus aureus, strain Mu50 / ATCC 700699 [TaxId: 1280]}
Probab=28.58 E-value=60 Score=24.18 Aligned_cols=17 Identities=24% Similarity=0.114 Sum_probs=14.7
Q ss_pred HHHHHhcCChHHHHHHH
Q psy9871 138 ILHLFECQSPGSVAVLL 154 (340)
Q Consensus 138 vLh~Let~~p~~l~~ql 154 (340)
.|+|++.++..|+++.+
T Consensus 28 ~L~~~e~ls~~EIA~~l 44 (106)
T d1xsva_ 28 ELFYLEDYSLSEIADTF 44 (106)
T ss_dssp HHHHTSCCCHHHHHHHT
T ss_pred HHHHHhCCcHHHHHHHH
Confidence 78999999999998753
No 3
>d1m1eb_ a.161.1.1 (B:) beta-catenin-interacting protein ICAT {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.97 E-value=9.2 Score=27.45 Aligned_cols=22 Identities=23% Similarity=0.382 Sum_probs=17.1
Q ss_pred hhHhhHHHhhhcCCCcc---hhhhh
Q psy9871 54 SLLSDMESFKAANPGAI---LEDFI 75 (340)
Q Consensus 54 ~LlSDM~aFKaANpg~v---~eDFV 75 (340)
.|--+=++|.++|.|++ |..|=
T Consensus 24 kLtp~ee~FL~~na~a~~~~lsqfe 48 (70)
T d1m1eb_ 24 NLTASEEEFLRTYAGVVNSQLSQLP 48 (70)
T ss_dssp CCCHHHHHHHHHTHHHHHHHHTC--
T ss_pred cCChhHHHHHHHhhHHHHHHHHhhh
Confidence 66777889999999999 77764
No 4
>d2pq3a1 a.39.1.5 (A:3-75) Calmodulin {Rattus norvegicus [TaxId: 10116]}
Probab=17.91 E-value=30 Score=23.19 Aligned_cols=59 Identities=19% Similarity=0.228 Sum_probs=34.9
Q ss_pred CChHHHHHHHHHHHhcCCchhh----HHHHHHHHHHhh-HhhH---HHhhhc---CCC-cchhhhhhhhCC
Q psy9871 22 KTEDQIEEDAEFLLSLGTDLES----SQLRAKLMSASL-LSDM---ESFKAA---NPG-AILEDFIRWYSP 80 (340)
Q Consensus 22 ~TeD~l~e~~~~l~~lg~~~~~----~~~r~~mqs~~L-lSDM---~aFKaA---Npg-~v~eDFVrW~SP 80 (340)
+|++++.+-.++...+.....| .+++.-|.+-.. +|+- +.|+.+ +-| --|++|+++.++
T Consensus 2 Ls~eei~el~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~s~~~~~~~~~~~D~d~~g~I~f~eF~~~m~~ 72 (73)
T d2pq3a1 2 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR 72 (73)
T ss_dssp CCHHHHHHHHHHHHHTCTTSSSEEEGGGHHHHHHHTTCCCCHHHHHHHHHHHCTTCSSEEEHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHcCCCCceEeHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHHhc
Confidence 7889998888888888777654 566665544222 1110 112222 223 446888887654
No 5
>d1gk8i_ d.73.1.1 (I:) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=17.78 E-value=36 Score=26.77 Aligned_cols=21 Identities=19% Similarity=0.406 Sum_probs=18.5
Q ss_pred CCCCChHHHHHHHHHHHhcCC
Q psy9871 19 IVIKTEDQIEEDAEFLLSLGT 39 (340)
Q Consensus 19 ~~p~TeD~l~e~~~~l~~lg~ 39 (340)
-||||+|+|..|-+.+.+-|=
T Consensus 18 LPpLtdeqI~kQI~Y~i~~GW 38 (126)
T d1gk8i_ 18 LPPLTDEQIAAQVDYIVANGW 38 (126)
T ss_dssp SSCCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHHhcCC
Confidence 478999999999999988774
No 6
>d1wdds_ d.73.1.1 (S:) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Rice (Oryza sativa) [TaxId: 4530]}
Probab=15.53 E-value=44 Score=26.02 Aligned_cols=21 Identities=19% Similarity=0.186 Sum_probs=18.5
Q ss_pred CCCCChHHHHHHHHHHHhcCC
Q psy9871 19 IVIKTEDQIEEDAEFLLSLGT 39 (340)
Q Consensus 19 ~~p~TeD~l~e~~~~l~~lg~ 39 (340)
-||||+++|..|-+.|.+-|=
T Consensus 18 LP~ltd~qI~~QI~yll~qGw 38 (122)
T d1wdds_ 18 LPPLTVEDLLKQIEYLLRSKW 38 (122)
T ss_dssp SSCCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHHHCCC
Confidence 478999999999999998775
No 7
>d1svdm1 d.73.1.1 (M:3-110) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Halothiobacillus neapolitanus [TaxId: 927]}
Probab=15.08 E-value=47 Score=25.25 Aligned_cols=51 Identities=12% Similarity=0.232 Sum_probs=32.4
Q ss_pred CCCCChHHHHHHHHHHHhcCCchh-----hHHHHHHH------------HHHhhHhhHHHhhhcCCCc
Q psy9871 19 IVIKTEDQIEEDAEFLLSLGTDLE-----SSQLRAKL------------MSASLLSDMESFKAANPGA 69 (340)
Q Consensus 19 ~~p~TeD~l~e~~~~l~~lg~~~~-----~~~~r~~m------------qs~~LlSDM~aFKaANpg~ 69 (340)
-||||+|+|.+|-+-|.+-|=... ..+.|.+- -.+..|+..++.+++|||+
T Consensus 17 LP~Ltde~I~~QV~yll~qGw~~~~E~~d~~~~r~~yW~mwklPmf~~~d~~~Vl~Ele~c~~~~p~~ 84 (108)
T d1svdm1 17 LPPMNAERIRAQIKYAIAQGWSPGIEHVEVKNSMNQYWYMWKLPFFGEQNVDNVLAEIEACRSAYPTH 84 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHTTCEEEEEEECGGGTTCSCCEEESCCCTTCCCHHHHHHHHHHHHHHSTTS
T ss_pred CCCCCHHHHHHHHHHHHHCCCEeeEeecccCCCcCceeeecCCCCcCCCcHHHHHHHHHHHHHHCCCC
Confidence 478999999999999988774321 11111110 1246677777777777764
No 8
>d1bxni_ d.73.1.1 (I:) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Alcaligenes eutrophus [TaxId: 106590]}
Probab=13.18 E-value=52 Score=25.76 Aligned_cols=51 Identities=20% Similarity=0.330 Sum_probs=34.2
Q ss_pred CCCCChHHHHHHHHHHHhcCCchh-----hHHHHHH---------H---HHHhhHhhHHHhhhcCCCc
Q psy9871 19 IVIKTEDQIEEDAEFLLSLGTDLE-----SSQLRAK---------L---MSASLLSDMESFKAANPGA 69 (340)
Q Consensus 19 ~~p~TeD~l~e~~~~l~~lg~~~~-----~~~~r~~---------m---qs~~LlSDM~aFKaANpg~ 69 (340)
-||||+++|.+|-+-|.+-|-.-. ..+.|.+ . -.+..++..+++++++||+
T Consensus 11 LP~Ltd~~I~~QV~yll~qG~~i~iE~ad~r~~r~~yW~mw~lPmf~~~d~~~Vl~ele~c~~e~p~~ 78 (129)
T d1bxni_ 11 LPELTDEQITKQLEYCLNQGWAVGLEYTDDPHPRNTYWEMFGLPMFDLRDAAGILMEINNARNTFPNH 78 (129)
T ss_dssp SSCCCHHHHHHHHHHHHHHTCEEEEEEESCCCTTCCCCEESSSCBTTCCCHHHHHHHHHHHHHHCSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCEeeEEEecCcCcccchhhccccccccCCCHHHHHHHHHHHHHHCCcC
Confidence 378999999999999988664221 0011100 0 1367788889999999984
No 9
>d1rbli_ d.73.1.1 (I:) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Synechococcus sp., strain pcc 6301 [TaxId: 1131]}
Probab=13.12 E-value=54 Score=24.94 Aligned_cols=21 Identities=19% Similarity=0.387 Sum_probs=17.9
Q ss_pred CCCCChHHHHHHHHHHHhcCC
Q psy9871 19 IVIKTEDQIEEDAEFLLSLGT 39 (340)
Q Consensus 19 ~~p~TeD~l~e~~~~l~~lg~ 39 (340)
-||||+++|.+|-+-|.+-|=
T Consensus 17 LP~Ltd~~I~~QV~yll~qGw 37 (109)
T d1rbli_ 17 LPPLSDRQIAAQIEYMIEQGF 37 (109)
T ss_dssp SSCCCHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHhCCC
Confidence 478999999999999988664
No 10
>d1allb_ a.1.1.3 (B:) Allophycocyanin beta subunit {Spirulina platensis [TaxId: 118562]}
Probab=11.36 E-value=1.6e+02 Score=23.14 Aligned_cols=60 Identities=8% Similarity=0.119 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHHHhhCCC
Q psy9871 182 ASHLIKRVEFATRCSEMELKRYQDICSEIGQIEALVSQYHSLHHKLSPDNNDASTQQFLADLVMNPS 248 (340)
Q Consensus 182 i~~l~~~~~~~l~~~~~~~~~~~~l~~~i~~vE~~v~~a~SL~~Kf~~~~~~~~l~~~v~~ll~~~e 248 (340)
|-+++..+-.-.|. .+..+++.|+.-+...+..+..++.|..+ +.+.+++.+..++..|+
T Consensus 5 it~~i~~AD~~gRy--ls~~eL~~l~~~~~~~~~Rl~aa~~L~~n-----a~~Iv~~A~~~~~~~p~ 64 (161)
T d1allb_ 5 ITSVINSSDVQGKY--LDASAIQKLKAYFATGELRVRAATTISAN-----AANIVKEAVAKSLLYSD 64 (161)
T ss_dssp HHHHHHHHHTTTCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHTTTST
T ss_pred HHHHHHHHHhcCCC--CCHHHHHHHHHHHhccHHHHHHHHHHHhh-----HHHHHHHHHHhhhhhhh
Confidence 33444444333333 24456666666666666666666666542 23455555556665555
Done!