RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9871
(340 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.0 bits (106), Expect = 3e-05
Identities = 41/254 (16%), Positives = 77/254 (30%), Gaps = 88/254 (34%)
Query: 148 GSVAV-LLVPALIHGAVSRLLEA-IHSVPVPSLGRMAS-------HLIKR-VEF-ATRCS 196
GS+ LLVP S+L E +P P+ G A L+ + + + ++
Sbjct: 14 GSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVE 73
Query: 197 EMELKRYQDICSEIGQIEALVSQY------HSLHHKLSPDNNDASTQQ-------FLADL 243
++ ++ + + + + Y H+L KL +N+ + A +
Sbjct: 74 PSKVGQFDQVLNLC--LTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARI 131
Query: 244 VMN-------PSSIIQ-VPEGPHGVI----GKRMSQMFYEAQKDTDVWKLPASPFSPL-- 289
+ S++ + V EG ++ G Q +TD + F L
Sbjct: 132 MAKRPFDKKSNSALFRAVGEGNAQLVAIFGG----------QGNTDDY------FEELRD 175
Query: 290 ----PSPACREFI------LRVVAPRPA------------------PSSRPTPHKLTALI 321
+ I L + PS+ P L+
Sbjct: 176 LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKD---YLL 232
Query: 322 MAPDSLIMSGCFTQ 335
P S + G Q
Sbjct: 233 SIPISCPLIG-VIQ 245
Score = 44.3 bits (104), Expect = 4e-05
Identities = 65/411 (15%), Positives = 121/411 (29%), Gaps = 118/411 (28%)
Query: 4 VRKLILYYQISLDFLIVIKTE-----DQIEEDAEFLLSLGTDLE--------SSQ--LRA 48
R L L + SL+ ++++ T Q++E +F L E ++ L
Sbjct: 6 TRPLTLSHG-SLEHVLLVPTASFFIASQLQE--QFNKILPEPTEGFAADDEPTTPAELVG 62
Query: 49 KLMS--ASLLSDMESFKAANP--GAILEDFIRWY-SPRDFIES--SELDQYGQKKGSLSA 101
K + +SL+ + L +F Y D I + ++L + +L
Sbjct: 63 KFLGYVSSLVEP-SKVGQFDQVLNLCLTEFENCYLEGND-IHALAAKLL--QENDTTLVK 118
Query: 102 RMLLPGNTWREVWEAAKPVPARRQRRLFNDTKEAE-KILHLF-----------ECQSPGS 149
L N A +P + LF E +++ +F E +
Sbjct: 119 TKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQ 178
Query: 150 VAVLLVPALIHGAVSRLLEAIHSVP---------------------VPSLGRMASH---- 184
+LV LI + L E I + P + S
Sbjct: 179 TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC 238
Query: 185 -LIKRVEFATRCSEMELKRYQDICSEIGQIEALVSQYHSLHHKLSPDNNDASTQQFL--- 240
LI ++ A Y +G +P + +
Sbjct: 239 PLIGVIQLA---------HYVVTAKLLG---------------FTPGELRSYLKGATGHS 274
Query: 241 ADLVMNPSSII-QVPEGP--HGVIGKRMSQMFY---EAQKDTDVWKLPASPFS------- 287
LV + I + + K ++ +F+ + LP S
Sbjct: 275 QGLVT--AVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNE 332
Query: 288 PLPSP--ACR----EFILRVVAPRPAPSSRPTPHKLT-ALIMAPDSLIMSG 331
+PSP + E + V S P ++ +L+ +L++SG
Sbjct: 333 GVPSPMLSISNLTQEQVQDYV--NKTNSHLPAGKQVEISLVNGAKNLVVSG 381
Score = 31.9 bits (72), Expect = 0.41
Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 6/59 (10%)
Query: 230 DNNDASTQQ---F-LADLVM-NPSSIIQVPEGPHG-VIGKRMSQMFYEAQKDTDVWKLP 282
+ D + F + D+V+ NP ++ G G I + S M +E D +
Sbjct: 1647 NRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEK 1705
Score = 29.2 bits (65), Expect = 2.5
Identities = 21/90 (23%), Positives = 30/90 (33%), Gaps = 28/90 (31%)
Query: 12 QISLDFLI------VIKTEDQIEEDAEFL-LSLG-----------TDLESS----QLRAK 49
Q +L L+ +K++ I DA F SLG +ES R
Sbjct: 1733 QPAL-TLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGM 1791
Query: 50 LMSASLLSDMESFK-----AANPGAILEDF 74
M ++ D A NPG + F
Sbjct: 1792 TMQVAVPRDELGRSNYGMIAINPGRVAASF 1821
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.6 bits (94), Expect = 7e-04
Identities = 46/288 (15%), Positives = 85/288 (29%), Gaps = 69/288 (23%)
Query: 9 LYYQISLDFLIVIKTEDQIEEDAEFLLSLGTDLESSQLRAKLMSA----SLL-----SDM 59
L YQI ++ D + L ++LR L S LL +
Sbjct: 205 LLYQIDPNW--------TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA 256
Query: 60 ESFKAANPGA-IL--------EDFIRWYSPRDFIESSELDQYGQKKG-SLSARML----- 104
+++ A N IL DF+ + + SL + L
Sbjct: 257 KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316
Query: 105 -LPGNTWREV-----------WEAAKPVPARRQRRLFNDTKEAEKILHLF-ECQSPG--- 148
LP REV E+ + A + + I+ P
Sbjct: 317 DLP----REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372
Query: 149 ----SVAVLLVPALIHGAVSRLL--EAIHSVPVPSLGRMASH-LIKRVEFATRCSEMELK 201
++V A I + L+ + I S + + ++ + L+++ + S +
Sbjct: 373 KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI- 431
Query: 202 RYQDICSEIGQIEAL----VSQYHSL----HHKLSPDNNDASTQQFLA 241
Y ++ ++ AL V Y+ L P D +
Sbjct: 432 -YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG 478
Score = 30.6 bits (68), Expect = 0.90
Identities = 29/159 (18%), Positives = 51/159 (32%), Gaps = 53/159 (33%)
Query: 5 RKLILYYQISL-----DFLIV-------------IKTEDQIEEDAEF-LLSLGTDLESSQ 45
R ++ +Y I D + +K + E F ++ L D
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL--DF--RF 502
Query: 46 LRAKL--------MSASLLSDMESFKAANPGAILEDFIRWYSPR---------DFIESSE 88
L K+ S S+L+ ++ K + +I P+ DF+ E
Sbjct: 503 LEQKIRHDSTAWNASGSILNTLQQLK------FYKPYICDNDPKYERLVNAILDFLPKIE 556
Query: 89 LDQYGQKKGSLSARMLLPGNTWREVW-EAAKPVPARRQR 126
+ K L L+ + ++ EA K V QR
Sbjct: 557 ENLICSKYTDLLRIALMAEDE--AIFEEAHKQV----QR 589
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.10
Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 11/39 (28%)
Query: 130 NDTKEAEKILHLFECQSPGSVAVLLVPALIHGAVSRLLE 168
K+ + L L+ + S PAL A+ +E
Sbjct: 20 QALKKLQASLKLY---ADDS-----APAL---AIKATME 47
Score = 29.1 bits (64), Expect = 1.4
Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 17/39 (43%)
Query: 271 EAQKDTDVWKLPASPFSPLPSPACREFILRVVAPRPAPS 309
E Q + KL AS L++ A AP+
Sbjct: 18 EKQA---LKKLQAS--------------LKLYADDSAPA 39
>2jxm_B Cytochrome F; copper, electron transport, metal-binding, transport;
HET: HEC; NMR {Prochlorothrix hollandica} SCOP: i.4.1.1
Length = 249
Score = 31.5 bits (71), Expect = 0.28
Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 10/89 (11%)
Query: 232 NDASTQQFLAD---LVMNPSSIIQVPEGPHGVIGKRMSQMFYEAQKDTDVWKLPASP--- 285
D QQ AD +N +++ +PEG +R+ + E D P S
Sbjct: 53 YDLDIQQVQADGSPSGLNVGAVLMLPEGFKLAPPERVDEELMEEVGDFYYLVTPYSETDE 112
Query: 286 ----FSPLPSPACREFILRVVAPRPAPSS 310
PLP +E I +++P PA +
Sbjct: 113 NILLAGPLPGEDYQEMIFPILSPNPATDA 141
>3hrz_C Cobra venom factor; serine protease, glycosilated, multi-domain,
complement SYST convertase, complement alternate
pathway; HET: NAG P6G; 2.20A {Naja kaouthia} PDB:
3frp_B* 3hs0_C*
Length = 379
Score = 30.3 bits (67), Expect = 0.98
Identities = 14/63 (22%), Positives = 21/63 (33%), Gaps = 3/63 (4%)
Query: 84 IESSELDQYGQKKGSLSARMLLPGNTWREVWEAAKPVPARRQRRLFNDTKEAEKILHLFE 143
I S D K ++ NTW E W ++L +D + L F
Sbjct: 320 IWGSRSDLLPTKDK---ISYIITKNTWIERWPHEDECQEEEFQKLCDDFAQFSYTLTEFG 376
Query: 144 CQS 146
C +
Sbjct: 377 CPT 379
>1ci3_M Protein (cytochrome F); electron transfer protein, complex subunit,
electron transpo; HET: HEM; 1.90A {Phormidium laminosum}
SCOP: b.2.6.1 b.84.2.2 PDB: 1tu2_B*
Length = 249
Score = 29.6 bits (66), Expect = 1.2
Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 11/86 (12%)
Query: 232 NDASTQQFLAD---LVMNPSSIIQVPEGPHGVIGKRMSQMFYEAQKDTDVWKLPASP--- 285
D S QQ AD +N +++ +PEG R+ + E + +++ P +
Sbjct: 53 YDHSVQQVQADGSKGPLNVGAVLMLPEGFTIAPEDRIPEEMKEEVGPSYLFQ-PYADDKQ 111
Query: 286 ----FSPLPSPACREFILRVVAPRPA 307
PLP E + V++P PA
Sbjct: 112 NIVLVGPLPGDEYEEIVFPVLSPNPA 137
>1hcz_A Cytochrome F; electron transport, photosynthesis, cytochrome B6F
complex, chloroplast transmembrane; HET: HEM; 1.96A
{Brassica rapa} SCOP: b.2.6.1 b.84.2.2 PDB: 1tkw_B*
1ctm_A* 2pcf_B*
Length = 252
Score = 29.2 bits (65), Expect = 1.6
Identities = 19/89 (21%), Positives = 32/89 (35%), Gaps = 12/89 (13%)
Query: 232 NDASTQQFLAD---LVMNPSSIIQVPEGPHGVIGKRMSQMFYEAQKDTDVWKLPASP--- 285
D +Q LA+ +N +++ +PEG R+S E + P
Sbjct: 53 YDMQLKQVLANGKKGALNVGAVLILPEGFELAPPDRISPEMKEKIGNLSF--QNYRPNKK 110
Query: 286 ----FSPLPSPACREFILRVVAPRPAPSS 310
P+P E ++AP PA +
Sbjct: 111 NILVIGPVPGQKYSEITFPILAPDPATNK 139
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex;
HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Length = 1642
Score = 29.0 bits (63), Expect = 2.8
Identities = 10/43 (23%), Positives = 17/43 (39%)
Query: 104 LLPGNTWREVWEAAKPVPARRQRRLFNDTKEAEKILHLFECQS 146
++ NTW E W ++L +D + L F C +
Sbjct: 1600 IITKNTWIERWPHEDECQEEEFQKLCDDFAQFSYTLTEFGCPT 1642
>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine
kinase, transferase; 1.80A {Rattus norvegicus} SCOP:
d.144.1.7 PDB: 3fpq_A
Length = 290
Score = 28.5 bits (64), Expect = 3.5
Identities = 8/53 (15%), Positives = 16/53 (30%), Gaps = 7/53 (13%)
Query: 265 MSQMFYEAQKDTDVWKLPASPFSPLPSPACREFILRVVAPRPAPSSRPTPHKL 317
+Q++ + F + P +E I + R R + L
Sbjct: 235 AAQIYRRVTSGV-----KPASFDKVAIPEVKEIIEGCI--RQNKDERYSIKDL 280
>1vf5_C Cytochrome F; photosynthesis, membrane protein complex, electron
transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A
{Mastigocladus laminosus} SCOP: b.2.6.1 b.84.2.2
f.23.23.1 PDB: 2d2c_C* 2e74_C* 2e75_C* 2e76_C* 2zt9_C*
Length = 289
Score = 28.1 bits (62), Expect = 4.4
Identities = 19/86 (22%), Positives = 33/86 (38%), Gaps = 12/86 (13%)
Query: 232 NDASTQQFLAD---LVMNPSSIIQVPEGPHGVIGKRMSQMFYEAQKDTDVWKLPASP--- 285
D QQ AD + +N +++ +PEG +R+ + + D P
Sbjct: 54 YDTKLQQVAADGSKVGLNVGAVLMLPEGFKIAPEERIPEELKKEVGDVYF--QPYKEGQD 111
Query: 286 ----FSPLPSPACREFILRVVAPRPA 307
PLP +E + V++P P
Sbjct: 112 NVLLVGPLPGEQYQEIVFPVLSPNPT 137
>1e2w_A Cytochrome F; electron transport proteins, internal water chain,
photosynthetic function impaired; HET: HEC; 1.6A
{Chlamydomonas reinhardtii} SCOP: b.2.6.1 b.84.2.2 PDB:
1cfm_A* 1ewh_A* 1e2v_A* 1e2z_A*
Length = 251
Score = 27.6 bits (61), Expect = 5.5
Identities = 19/86 (22%), Positives = 33/86 (38%), Gaps = 12/86 (13%)
Query: 232 NDASTQQFLAD---LVMNPSSIIQVPEGPHGVIGKRMSQMFYEAQKDTDVWKLPASP--- 285
D +Q LA+ +N ++ +PEG R+ E + P SP
Sbjct: 53 YDKQVKQVLANGKKGDLNVGMVLILPEGFELAPPDRVPAEIKEKVGNLYY--QPYSPEQK 110
Query: 286 ----FSPLPSPACREFILRVVAPRPA 307
P+P E ++ +++P PA
Sbjct: 111 NILVVGPVPGKKYSEMVVPILSPDPA 136
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A
{Bos taurus}
Length = 1661
Score = 28.2 bits (61), Expect = 5.9
Identities = 8/42 (19%), Positives = 18/42 (42%)
Query: 104 LLPGNTWREVWEAAKPVPARRQRRLFNDTKEAEKILHLFECQ 145
++ +TW E+W A+ ++ D + + +F C
Sbjct: 1619 IIGKDTWVELWPEAEECQDEENQKQCEDLANFTENMVVFGCP 1660
>1q90_A Apocytochrome F; membrane protein complex, photosynthesis, electron
transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR
TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP:
b.2.6.1 b.84.2.2 f.23.23.1
Length = 292
Score = 27.7 bits (61), Expect = 6.0
Identities = 19/86 (22%), Positives = 33/86 (38%), Gaps = 12/86 (13%)
Query: 232 NDASTQQFLAD---LVMNPSSIIQVPEGPHGVIGKRMSQMFYEAQKDTDVWKLPASP--- 285
D +Q LA+ +N ++ +PEG R+ E + P SP
Sbjct: 53 YDKQVKQVLANGKKGDLNVGMVLILPEGFELAPPDRVPAEIKEKVGNLYY--QPYSPEQK 110
Query: 286 ----FSPLPSPACREFILRVVAPRPA 307
P+P E ++ +++P PA
Sbjct: 111 NILVVGPVPGKKYSEMVVPILSPDPA 136
>2y6x_A PSB27, photosystem II 11 KD protein; photosynthesis; 1.60A
{Thermosynechococcus elongatus}
Length = 113
Score = 26.5 bits (58), Expect = 6.4
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 118 KPVPARRQRRLFNDTKEAEKIL 139
+P+P + + RL + K+ E L
Sbjct: 86 RPLPEKLKARLEQEFKQVELAL 107
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 354
Score = 27.5 bits (61), Expect = 6.6
Identities = 4/37 (10%), Positives = 11/37 (29%), Gaps = 1/37 (2%)
Query: 187 KRVEFATRCSEMELKRYQDICSEIGQIEALVSQYHSL 223
+ S + +R I +E +++
Sbjct: 317 NKSSIIEYSSVFD-ERLSLGNKAIFHLEGFIAKVMCC 352
>4e0a_A BH1408 protein; structural genomics, PSI-biology, protein structure
initiati northeast structural genomics consortium, NESG,
transferase; 1.80A {Bacillus halodurans} PDB: 4f6a_A*
Length = 164
Score = 26.6 bits (59), Expect = 8.4
Identities = 12/57 (21%), Positives = 16/57 (28%), Gaps = 4/57 (7%)
Query: 210 IGQIEALVSQYHSLHHKLSPD----NNDASTQQFLADLVMNPSSIIQVPEGPHGVIG 262
++ L +Q H H K D N V S + V IG
Sbjct: 11 YEEVARLHTQVHEAHVKERGDIFRSNEPTLNPSRFQAAVQGEKSTVLVFVDEREKIG 67
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.133 0.391
Gapped
Lambda K H
0.267 0.0706 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,168,644
Number of extensions: 308036
Number of successful extensions: 572
Number of sequences better than 10.0: 1
Number of HSP's gapped: 565
Number of HSP's successfully gapped: 27
Length of query: 340
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 246
Effective length of database: 4,077,219
Effective search space: 1002995874
Effective search space used: 1002995874
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.2 bits)