RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9871
         (340 letters)



>d1vqop1 a.94.1.1 (P:1-143) Ribosomal protein L19 (L19e) {Archaeon
           Haloarcula marismortui [TaxId: 2238]}
          Length = 143

 Score = 26.2 bits (58), Expect = 3.4
 Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 9/47 (19%)

Query: 92  YGQKKGSLSARMLLPGNTWREVWEAAKPVPARRQRRLFNDTKEAEKI 138
            G +KG   AR        +E WE+      R QR    + ++   +
Sbjct: 77  AGSRKGKAGARQ--NS---KEDWESR----IRAQRTKLRELRDEGTL 114


>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 196

 Score = 26.3 bits (57), Expect = 5.5
 Identities = 7/39 (17%), Positives = 18/39 (46%)

Query: 200 LKRYQDICSEIGQIEALVSQYHSLHHKLSPDNNDASTQQ 238
           + +   I  ++ + +  ++Q  SLH +L  + N+     
Sbjct: 8   MNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASH 46


>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus)
          [TaxId: 10116]}
          Length = 143

 Score = 25.1 bits (54), Expect = 9.7
 Identities = 11/49 (22%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 21 IKTEDQIEEDA--EFLLSLGTDLESSQLRAKLMSASLLSDMESFKAANP 67
          ++ E+  EE+   +   SL  D +++QL   ++ A+ L  ++    ++P
Sbjct: 9  VEKEEPKEEEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDP 57


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.133    0.391 

Gapped
Lambda     K      H
   0.267   0.0635    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,238,418
Number of extensions: 57277
Number of successful extensions: 111
Number of sequences better than 10.0: 1
Number of HSP's gapped: 111
Number of HSP's successfully gapped: 5
Length of query: 340
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 254
Effective length of database: 1,226,816
Effective search space: 311611264
Effective search space used: 311611264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.4 bits)