RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9876
(193 letters)
>1to4_A Superoxide dismutase; beta-barrel, oxidoreductase; 1.55A
{Schistosoma mansoni} SCOP: b.1.8.1 PDB: 1to5_A 3mnd_A
Length = 156
Score = 107 bits (268), Expect = 5e-30
Identities = 38/76 (50%), Positives = 50/76 (65%)
Query: 15 PHGAPTDPDRHAGDLGSITADKNGFVSLQISDHVLSLDGPLTILGRGVVVHEKADDLGRG 74
HGAP D RH GDLG++ A +G +D ++SL+G +I+GR +V+HE DDLGRG
Sbjct: 72 EHGAPEDSIRHVGDLGNVVAGADGNAVYNATDKLISLNGSHSIIGRSMVIHENEDDLGRG 131
Query: 75 DNAESVKTGNAGARLA 90
+ S TGNAG RLA
Sbjct: 132 GHELSKVTGNAGGRLA 147
Score = 99.3 bits (248), Expect = 6e-27
Identities = 30/68 (44%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 119 PIMAVAILNGKD-VKGTVLFLQPKPQGPVLISGNITGLTPGDHGFHIHEKGDISQGCASM 177
+ AV ++ G VKG V F Q GPV + +GL G HGFH+HE GD + GC S
Sbjct: 3 NMKAVCVMTGTAGVKGVVKFTQETDNGPVHVHAEFSGLKAGKHGFHVHEFGDTTNGCTSA 62
Query: 178 GPHYNPFN 185
G H+NP
Sbjct: 63 GAHFNPTK 70
>3f7l_A Copper,zinc superoxide dismutase; oxidoreductase (superoxide
acceptor), greek KEY beta-barrel, amyloid filaments,
ALS, FALS; 0.99A {Alvinella pompejana} PDB: 3f7k_A
Length = 152
Score = 104 bits (262), Expect = 4e-29
Identities = 38/76 (50%), Positives = 53/76 (69%)
Query: 15 PHGAPTDPDRHAGDLGSITADKNGFVSLQISDHVLSLDGPLTILGRGVVVHEKADDLGRG 74
HGAP D +RHAGDLG++ A ++G + + D ++ L GP +++GR +VVH DDLGRG
Sbjct: 68 EHGAPEDENRHAGDLGNVVAGEDGKAVINMKDKLVKLTGPDSVIGRTLVVHVDEDDLGRG 127
Query: 75 DNAESVKTGNAGARLA 90
+ +S TGNAG RLA
Sbjct: 128 GHEQSKITGNAGGRLA 143
Score = 90.0 bits (224), Expect = 2e-23
Identities = 31/65 (47%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Query: 122 AVAILNGKD-VKGTVLFLQPKPQGPVLISGNITGLTPGDHGFHIHEKGDISQGCASMGPH 180
AV +L G V GT+ + V ++G ITGLTPG HGFH+HE GD + GC S G H
Sbjct: 4 AVCVLKGDSPVTGTIHLKEEG--DMVTVTGEITGLTPGKHGFHVHEFGDNTNGCTSAGGH 61
Query: 181 YNPFN 185
+NP
Sbjct: 62 FNPHG 66
>2q2l_A Superoxide dismutase; SOD, SAD, antioxidant, oxidoreductase,
metal-binding; 2.37A {Potentilla atrosanguinea}
Length = 152
Score = 104 bits (261), Expect = 5e-29
Identities = 39/76 (51%), Positives = 48/76 (63%)
Query: 15 PHGAPTDPDRHAGDLGSITADKNGFVSLQISDHVLSLDGPLTILGRGVVVHEKADDLGRG 74
HG+P D RHAGDLG+IT +G I D + L GP +I+GR VVVH DDLG+G
Sbjct: 69 EHGSPEDETRHAGDLGNITVGDDGTACFTIVDKQIPLTGPHSIIGRAVVVHADPDDLGKG 128
Query: 75 DNAESVKTGNAGARLA 90
+ S TGNAG R+A
Sbjct: 129 GHELSKSTGNAGGRIA 144
Score = 95.8 bits (239), Expect = 1e-25
Identities = 33/65 (50%), Positives = 44/65 (67%), Gaps = 2/65 (3%)
Query: 122 AVAILNGKD-VKGTVLFLQPKPQGPVLISGNITGLTPGDHGFHIHEKGDISQGCASMGPH 180
VA+L+ + V GT+LF Q + GP ++GNI+GL PG HGFH+H GD + GC S GPH
Sbjct: 4 GVAVLSSSEGVAGTILFTQ-EGDGPTTVTGNISGLKPGLHGFHVHALGDTTNGCMSTGPH 62
Query: 181 YNPFN 185
+NP
Sbjct: 63 FNPAG 67
>2e47_A EA4, TIME interVal measuring enzyme TIME; motalloprotein,
glycoprotein, metal binding protein; HET: NAG MAN; 2.11A
{Bombyx mori} PDB: 2e46_A
Length = 156
Score = 103 bits (259), Expect = 1e-28
Identities = 39/76 (51%), Positives = 53/76 (69%)
Query: 15 PHGAPTDPDRHAGDLGSITADKNGFVSLQISDHVLSLDGPLTILGRGVVVHEKADDLGRG 74
HG P D +RH GDLG++ D+N + + + D +SL GP I+GR VV+HEKADD G+
Sbjct: 74 DHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEKADDYGKS 133
Query: 75 DNAESVKTGNAGARLA 90
D+ +S KTGNAG R+A
Sbjct: 134 DHPDSRKTGNAGGRVA 149
Score = 100 bits (252), Expect = 2e-27
Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 1/70 (1%)
Query: 116 VTGPIMAVAILNGKDVKGTVLFLQPKPQGPVLISGNITGLTPGDHGFHIHEKGDISQGCA 175
T P A+A+L+ + ++G + F Q G V + G ITGL PG++GFH+HEKGD+S GC
Sbjct: 4 FTTPSRAIAVLSTETIRGNITFTQ-VQDGKVHVQGGITGLPPGEYGFHVHEKGDLSGGCL 62
Query: 176 SMGPHYNPFN 185
S G H+NP +
Sbjct: 63 STGSHFNPEH 72
>1f1g_A Cuznsod, copper-zinc superoxide dismutase; nitric oxide,
oxidoreductase; 1.35A {Saccharomyces cerevisiae} SCOP:
b.1.8.1 PDB: 1f1a_A 1f18_A 1jcv_A 1b4l_A 1sdy_A 1yaz_A
1yso_A 2jcw_A 1f1d_A 1jk9_A 1b4t_A
Length = 154
Score = 103 bits (258), Expect = 2e-28
Identities = 39/76 (51%), Positives = 51/76 (67%)
Query: 15 PHGAPTDPDRHAGDLGSITADKNGFVSLQISDHVLSLDGPLTILGRGVVVHEKADDLGRG 74
HGAPTD RH GD+G++ D+NG D ++ L GP +++GR VV+H DDLG+G
Sbjct: 71 THGAPTDEVRHVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVIHAGQDDLGKG 130
Query: 75 DNAESVKTGNAGARLA 90
D ES+KTGNAG R A
Sbjct: 131 DTEESLKTGNAGPRPA 146
Score = 93.2 bits (232), Expect = 1e-24
Identities = 32/66 (48%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 122 AVAILNGK-DVKGTVLFLQPKPQGPVLISGNITGLTP-GDHGFHIHEKGDISQGCASMGP 179
AVA+L G V G V F Q P +S I G +P + GFHIHE GD + GC S GP
Sbjct: 4 AVAVLKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFGDATNGCVSAGP 63
Query: 180 HYNPFN 185
H+NPF
Sbjct: 64 HFNPFK 69
>3ce1_A Superoxide dismutase [CU-ZN]; greek-KEY beta barrel, antioxidant,
copper, metal-binding, oxidoreductase, zinc; 1.20A
{Cryptococcus liquefaciens}
Length = 168
Score = 103 bits (259), Expect = 2e-28
Identities = 41/76 (53%), Positives = 52/76 (68%)
Query: 15 PHGAPTDPDRHAGDLGSITADKNGFVSLQISDHVLSLDGPLTILGRGVVVHEKADDLGRG 74
HG T RH GDLG++ D +G +QISD LSL GP +I+GR +V+H DDLG+
Sbjct: 74 NHGDRTAEVRHVGDLGNVKTDASGVAKVQISDSQLSLVGPHSIIGRTIVIHAGEDDLGKT 133
Query: 75 DNAESVKTGNAGARLA 90
D+ ES+KTGNAGAR A
Sbjct: 134 DHPESLKTGNAGARSA 149
Score = 95.9 bits (239), Expect = 1e-25
Identities = 30/72 (41%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 116 VTGPIMAVAILNGK-DVKGTVLFLQPKPQGPVLISGNITGLTP-GDHGFHIHEKGDISQG 173
++ I A+A+L G V+G + F Q GPV +SG I + GFH+H+ GD S G
Sbjct: 1 MSSTIKAIAVLKGDSPVQGVITFTQESSGGPVTVSGEIKNMDANAQRGFHVHQFGDNSNG 60
Query: 174 CASMGPHYNPFN 185
C S GPH+NP
Sbjct: 61 CTSAGPHFNPTG 72
>3pu7_A Superoxide dismutase [CU-ZN], chloroplastic; oxidoreductase,
antioxidant, metal-binding, DIS bond, transit peptide;
1.80A {Solanum lycopersicum} PDB: 3km1_A 3km2_A 3mkg_A
3hog_A 1srd_A
Length = 154
Score = 102 bits (257), Expect = 2e-28
Identities = 39/76 (51%), Positives = 53/76 (69%)
Query: 15 PHGAPTDPDRHAGDLGSITADKNGFVSLQISDHVLSLDGPLTILGRGVVVHEKADDLGRG 74
HGAP D RHAGDLG+I A+ +G + + D+ + L GP +++GR +VVHE DDLG+G
Sbjct: 70 THGAPGDEIRHAGDLGNIVANADGVAEVTLVDNQIPLTGPNSVVGRALVVHELEDDLGKG 129
Query: 75 DNAESVKTGNAGARLA 90
+ S+ TGNAG RLA
Sbjct: 130 GHELSLTTGNAGGRLA 145
Score = 95.1 bits (237), Expect = 2e-25
Identities = 32/69 (46%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 118 GPIMAVAILNGK-DVKGTVLFLQPKPQGPVLISGNITGLTPGDHGFHIHEKGDISQGCAS 176
AVA+L G +V+G V Q GP ++ ITGL PG HGFH+HE GD + GC S
Sbjct: 1 ATKKAVAVLKGNSNVEGVVTLSQ-DDDGPTTVNVRITGLAPGLHGFHLHEYGDTTNGCMS 59
Query: 177 MGPHYNPFN 185
G H+NP
Sbjct: 60 TGAHFNPNK 68
>2wyt_A Superoxide dismutase [CU-ZN]; oxidoreductase, disease mutation,
amyotrophic lateral sclero antioxidant; HET: SO4; 1.00A
{Homo sapiens} PDB: 2wyz_A* 2wz0_A* 2wz5_A* 1hl4_A
1spd_A 2c9v_A* 1hl5_A 1pu0_A 2c9u_A 2c9s_A* 2v0a_A*
3ecu_A 3kh3_A 3kh4_A 3re0_A 2wko_A 3gzo_A 2wz6_A* 3gzp_A
1uxl_A ...
Length = 153
Score = 102 bits (256), Expect = 3e-28
Identities = 47/76 (61%), Positives = 57/76 (75%)
Query: 15 PHGAPTDPDRHAGDLGSITADKNGFVSLQISDHVLSLDGPLTILGRGVVVHEKADDLGRG 74
HG P D +RH GDLG++TADK+G + I D V+SL G I+GR +VVHEKADDLG+G
Sbjct: 70 KHGGPKDEERHVGDLGNVTADKDGVADVSIEDSVISLSGDHCIIGRTLVVHEKADDLGKG 129
Query: 75 DNAESVKTGNAGARLA 90
N ES KTGNAG+RLA
Sbjct: 130 GNEESTKTGNAGSRLA 145
Score = 98.2 bits (245), Expect = 1e-26
Identities = 32/65 (49%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 122 AVAILNGK-DVKGTVLFLQPKPQGPVLISGNITGLTPGDHGFHIHEKGDISQGCASMGPH 180
AV +L G V+G + F Q + GPV + G+I G+T G HGFH+HE GD + GC S GPH
Sbjct: 4 AVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGVTEGLHGFHVHEFGDNTAGCTSAGPH 63
Query: 181 YNPFN 185
+NP +
Sbjct: 64 FNPLS 68
>3kbe_A Superoxide dismutase [CU-ZN]; Cu-Zn superoxide dismutase,
antioxidant, oxidoreductase, NEM disulfide bond,
metal-binding; 1.10A {Caenorhabditis elegans} PDB:
3kbf_A
Length = 157
Score = 102 bits (255), Expect = 4e-28
Identities = 33/64 (51%), Positives = 41/64 (64%)
Query: 122 AVAILNGKDVKGTVLFLQPKPQGPVLISGNITGLTPGDHGFHIHEKGDISQGCASMGPHY 181
AVA+L G+ V GT+ Q +I G I GLTPG HGFH+H+ GD + GC S GPH+
Sbjct: 4 AVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISAGPHF 63
Query: 182 NPFN 185
NPF
Sbjct: 64 NPFG 67
Score = 99.0 bits (247), Expect = 7e-27
Identities = 37/79 (46%), Positives = 50/79 (63%), Gaps = 3/79 (3%)
Query: 15 PHGAPTDPDRHAGDLGSITADKNGFVSLQISDHVLSLDGPLTILGRGVVVHEKADDLGRG 74
HG P RH GDLG++ A +G ++++D +++L GP T++GR +VVH DDLG G
Sbjct: 69 THGGPKSEIRHVGDLGNVEAGADGVAKIKLTDTLVTLYGPNTVVGRSMVVHAGQDDLGEG 128
Query: 75 ---DNAESVKTGNAGARLA 90
ES KTGNAGAR A
Sbjct: 129 VGDKAEESKKTGNAGARAA 147
>3l9y_A Cu-znsod1, superoxide dismutase [CU-ZN]; greek-KEY-barrel,
antioxidant, copper, cytoplasm, metal- binding,
oxidoreductase; 1.80A {Bombyx mori} PDB: 3l9e_A
Length = 154
Score = 101 bits (253), Expect = 8e-28
Identities = 35/67 (52%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 119 PIMAVAILNGKDVKGTVLFLQPKPQGPVLISGNITGLTPGDHGFHIHEKGDISQGCASMG 178
P AV +L G DV GTV F Q + PV++SG + GLT G HGFH+HE GD + GC S G
Sbjct: 2 PAKAVCVLRG-DVSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAG 60
Query: 179 PHYNPFN 185
H+NP
Sbjct: 61 AHFNPEK 67
Score = 96.3 bits (240), Expect = 8e-26
Identities = 38/77 (49%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 15 PHGAPTDPDRHAGDLGSITA-DKNGFVSLQISDHVLSLDGPLTILGRGVVVHEKADDLGR 73
HG P+ RH GDLG+I A + G + I D +SL GP +I+GR +VVH DDLG
Sbjct: 69 DHGGPSSAVRHVGDLGNIEAIEDAGVTKVSIQDSQISLHGPNSIIGRTLVVHADPDDLGL 128
Query: 74 GDNAESVKTGNAGARLA 90
G N S TGNAG R+A
Sbjct: 129 GGNELSKTTGNAGGRIA 145
>1do5_A Human copper chaperone for superoxide dismutase domain II;
beta-barrel; 2.75A {Homo sapiens} SCOP: b.1.8.1
Length = 154
Score = 99.7 bits (249), Expect = 4e-27
Identities = 33/76 (43%), Positives = 46/76 (60%), Gaps = 3/76 (3%)
Query: 15 PHGAPTDPDRHAGDLGSITADKNGFVSLQISDHVLSLDGPLTILGRGVVVHEKADDLGRG 74
HG P D DRH GDLG++ AD +G ++ D L + ++GR +++ E DDLGRG
Sbjct: 71 SHGGPQDSDRHRGDLGNVRADADGRAIFRMEDEQLKVWD---VIGRSLIIDEGEDDLGRG 127
Query: 75 DNAESVKTGNAGARLA 90
+ S TGN+G RLA
Sbjct: 128 GHPLSKITGNSGERLA 143
Score = 96.2 bits (240), Expect = 8e-26
Identities = 33/65 (50%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 122 AVAILNGK-DVKGTVLFLQPKPQGPVLISGNITGLTPGDHGFHIHEKGDISQGCASMGPH 180
AVAIL G V+G V FLQ P LI G I GL PG HG H+H+ GD++ C S G H
Sbjct: 6 AVAILGGPGTVQGVVRFLQLTP-ERCLIEGTIDGLEPGLHGLHVHQYGDLTNNCNSCGNH 64
Query: 181 YNPFN 185
+NP
Sbjct: 65 FNPDG 69
>1xso_A Copper,zinc superoxide dismutase; oxidoreductase (superoxide
acceptor); 1.49A {Xenopus laevis} SCOP: b.1.8.1
Length = 150
Score = 99.3 bits (248), Expect = 4e-27
Identities = 47/76 (61%), Positives = 58/76 (76%), Gaps = 1/76 (1%)
Query: 15 PHGAPTDPDRHAGDLGSITADKNGFVSLQISDHVLSLDGPLTILGRGVVVHEKADDLGRG 74
HGAP D DRH GDLG++TA+ G +I+D ++SL GP +I+GR VVHEKADDLG+G
Sbjct: 68 NHGAPGDTDRHVGDLGNVTAE-GGVAQFKITDSLISLKGPNSIIGRTAVVHEKADDLGKG 126
Query: 75 DNAESVKTGNAGARLA 90
N ES+KTGNAG RLA
Sbjct: 127 GNDESLKTGNAGGRLA 142
Score = 95.1 bits (237), Expect = 2e-25
Identities = 35/65 (53%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 122 AVAILNGK-DVKGTVLFLQPKPQGPVLISGNITGLTPGDHGFHIHEKGDISQGCASMGPH 180
AV +L G DVKG V F Q + +G V + G I GLT G HGFHIH GD + GC S G H
Sbjct: 3 AVCVLAGSGDVKGVVHFEQ-QDEGAVSVEGKIEGLTDGLHGFHIHVFGDNTNGCMSAGSH 61
Query: 181 YNPFN 185
+NP N
Sbjct: 62 FNPEN 66
>1pzs_A Superoxide dismutase [CU-ZN]; Cu-protein, beta core, antioxidant,
metal binding, greek KEY barrel, oxidoreductase; 1.63A
{Mycobacterium tuberculosis} SCOP: b.1.8.1
Length = 208
Score = 94.5 bits (235), Expect = 1e-24
Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 13/88 (14%)
Query: 16 HGAPTDPDRHAGDLGSITADKNGFVSLQISDHVLSLDGPLTILGRGVVVHEKADDLGR-- 73
H +GDL S+ +G L + ++D L+ +++H AD+
Sbjct: 114 HVPGHTGTPASGDLASLQVRGDGSAMLVTTTDAFTMDDLLSGAKTAIIIHAGADNFANIP 173
Query: 74 -----------GDNAESVKTGNAGARLA 90
G + ++ TG+AG R+A
Sbjct: 174 PERYVQVNGTPGPDETTLTTGDAGKRVA 201
Score = 69.1 bits (169), Expect = 6e-15
Identities = 17/72 (23%), Positives = 23/72 (31%), Gaps = 8/72 (11%)
Query: 122 AVAILNGKD--VKGTVLFLQPKPQGPVLIS-GNITGLTPGDHGFHIHEKGDISQGCA--- 175
+ L D T F V I+ + LTPG HG HIH+ G
Sbjct: 40 LTSTLTAPDGTKVATAKFEFANGYATVTIATTGVGKLTPGFHGLHIHQVGKCEPNSVAPT 99
Query: 176 --SMGPHYNPFN 185
+ G +
Sbjct: 100 GGAPGNFLSAGG 111
>1eqw_A Cu,Zn superoxide dismutase; greek KEY B-barrel, oxidoreductase;
2.30A {Salmonella typhimurium} SCOP: b.1.8.1 PDB:
2wn0_A* 2wn1_A* 2wwn_A* 2wwo_A*
Length = 156
Score = 86.6 bits (215), Expect = 4e-22
Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 6/75 (8%)
Query: 16 HGAPTDPDRHAGDLGSITADKNGFVSLQISDHVLSLDGPLTILGRGVVVHEKADDLGRGD 75
H P + H GDL + + +G + + L + G +++H+ D+
Sbjct: 82 HLGPYNDKGHLGDLPGLVVNADGTATYPLLAP--RLKSLSELKGHSLMIHKGGDNYSDK- 138
Query: 76 NAESVKTGNAGARLA 90
G GAR A
Sbjct: 139 ---PAPLGGGGARFA 150
Score = 75.8 bits (187), Expect = 7e-18
Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 10/79 (12%)
Query: 115 TVTGPIMAVAILNGKDVKGTVLFLQPKPQGPVLISGNITGLTPGDHGFHIHEKGDISQG- 173
T+T + + G + + +L + ++ GLTPG HGFH+H G
Sbjct: 2 TLTVKMNDALSSGTGENIGEITVSETP--YGLLFTPHLNGLTPGIHGFHVHTNPSCMPGM 59
Query: 174 -------CASMGPHYNPFN 185
G H +P
Sbjct: 60 KDGKEVPALMAGGHLDPEK 78
>2aqp_A Superoxide dismutase [CU-ZN]; electrostatic guidance, neisseria
MENI oxidoreductase; 1.30A {Neisseria meningitidis} PDB:
2aqn_A 2aqr_A 2aqq_A 2aqt_C 2aqs_A 2aps_A 1z9p_A
Length = 164
Score = 87.0 bits (216), Expect = 4e-22
Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 6/76 (7%)
Query: 15 PHGAPTDPDRHAGDLGSITADKNGFVSLQISDHVLSLDGPLTILGRGVVVHEKADDLGRG 74
HG P D H GDL ++T +G + + L + G +++H D+
Sbjct: 90 QHGYPWQDDAHLGDLPALTVLHDGTATNPVLAP--RLKHLDDVRGHSIMIHTGGDNHSD- 146
Query: 75 DNAESVKTGNAGARLA 90
G G R+A
Sbjct: 147 ---HPAPLGGGGPRMA 159
Score = 79.7 bits (197), Expect = 3e-19
Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 10/79 (12%)
Query: 115 TVTGPIMAVAILNGKDVKGTVLFLQPKPQGPVLISGNITGLTPGDHGFHIHEKGDIS--- 171
++ + + +NG GTV + ++ + ++ GL+ G HGFHIHE
Sbjct: 11 SIEVKVQQLDPVNGNKDVGTVTITESN--YGLVFTPDLQGLSAGLHGFHIHENPSCEPKE 68
Query: 172 -----QGCASMGPHYNPFN 185
G H++P
Sbjct: 69 KEGKLTAGLGAGGHWDPKG 87
>1eso_A SOD, Cu, Zn superoxide dismutase; oxidoreductase, monomeric
superoxide dismutase, copper enzymes, enzyme evolution,
X- RAY; 2.00A {Escherichia coli} SCOP: b.1.8.1 PDB:
2k4w_A
Length = 154
Score = 85.8 bits (213), Expect = 7e-22
Identities = 14/76 (18%), Positives = 27/76 (35%), Gaps = 6/76 (7%)
Query: 15 PHGAPTDPDRHAGDLGSITADKNGFVSLQISDHVLSLDGPLTILGRGVVVHEKADDLGRG 74
+ H GDL ++ + +G + + L I + ++VH D++
Sbjct: 80 GKHEGPEGAGHLGDLPALVVNNDGKATDAVIAP--RLKSLDEIKDKALMVHVGGDNMSD- 136
Query: 75 DNAESVKTGNAGARLA 90
+ G G R A
Sbjct: 137 ---QPKPLGGGGERYA 149
Score = 76.9 bits (190), Expect = 2e-18
Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 11/74 (14%)
Query: 121 MAVAILNGK-DVKGTVLFLQPKPQGPVLISGNITGLTPGDHGFHIHEKGDISQ------- 172
M + G G+V + + S ++ L PG+HGFHIH KG
Sbjct: 7 MNLVTSQGVGQSIGSVTITETD--KGLEFSPDLKALPPGEHGFHIHAKGSCQPATKDGKA 64
Query: 173 -GCASMGPHYNPFN 185
S G H +P N
Sbjct: 65 SAAESAGGHLDPQN 78
>2aqm_A Superoxide dismutase [CU-ZN]; oxidoreductase; 1.10A {Brucella
abortus}
Length = 154
Score = 85.4 bits (212), Expect = 1e-21
Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 6/76 (7%)
Query: 15 PHGAPTDPDRHAGDLGSITADKNGFVSLQISDHVLSLDGPLTILGRGVVVHEKADDLGRG 74
H + D H GDL ++A+ +G VS + L I R ++VH D+
Sbjct: 80 HHHLGPEGDGHMGDLPRLSANADGKVSETVVAP--HLKKLAEIKQRSLMVHVGGDNYSDK 137
Query: 75 DNAESVKTGNAGARLA 90
G GAR A
Sbjct: 138 ----PEPLGGGGARFA 149
Score = 77.3 bits (191), Expect = 1e-18
Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 10/79 (12%)
Query: 115 TVTGPIMAVAILNGKDVKGTVLFLQPKPQGPVLISGNITGLTPGDHGFHIHEKGDISQG- 173
+ T + GTV+ + G + N+ LTPG HGFH+HE + G
Sbjct: 2 STTVKMYEALPTGPGKEVGTVVISEAP--GGLHFKVNMEKLTPGYHGFHVHENPSCAPGE 59
Query: 174 -------CASMGPHYNPFN 185
+ G HY+P N
Sbjct: 60 KDGKIVPALAAGGHYDPGN 78
>1oal_A Superoxide dismutase; oxidoreductase, prokaryotic Cu,
protein-subunit interaction recognition, protein
electrostatic; 1.5A {Photobacterium leiognathi} SCOP:
b.1.8.1 PDB: 1bzo_A 1ibh_A 1ibd_A 1yai_A 1ib5_A 1oaj_A
1ibb_A 1ibf_A
Length = 151
Score = 84.6 bits (210), Expect = 2e-21
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 7/76 (9%)
Query: 15 PHGAPTDPDRHAGDLGSITADKNGFVSLQISDHVLSLDGPLTILGRGVVVHEKADDLGRG 74
HG P D H GDL ++ NG + + L+L + G +++H D+
Sbjct: 78 KHGFPWTDDNHKGDLPALFVSANGLATNPVLAPRLTLKE---LKGHAIMIHAGGDNH--- 131
Query: 75 DNAESVKTGNAGARLA 90
+ G GAR+A
Sbjct: 132 -SDMPKALGGGGARVA 146
Score = 75.0 bits (185), Expect = 9e-18
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 10/74 (13%)
Query: 120 IMAVAILNGKDVKGTVLFLQPKPQGPVLISGNITGLTPGDHGFHIHEKGDISQG------ 173
+ + L GT+ Q K V+ + LTPG+HGFHIH+ G +
Sbjct: 4 TVKMTDLQTGKPVGTIELSQNK--YGVVFIPELADLTPGEHGFHIHQNGSCASSEKDGKV 61
Query: 174 --CASMGPHYNPFN 185
+ G HY+P +
Sbjct: 62 VLGGAAGGHYDPEH 75
>1z9n_A Superoxide dismutase [CU-ZN]; Cu-Zn SOD, SOD, oxidoreductase; HET:
HEM; 1.50A {Haemophilus ducreyi}
Length = 177
Score = 84.8 bits (210), Expect = 3e-21
Identities = 17/76 (22%), Positives = 28/76 (36%), Gaps = 6/76 (7%)
Query: 15 PHGAPTDPDRHAGDLGSITADKNGFVSLQISDHVLSLDGPLTILGRGVVVHEKADDLGRG 74
HG P D H GDL ++ +G + + L + G +++H D+
Sbjct: 103 KHGYPWSDDAHMGDLPALFVMHDGSATTPVLAP--RLKKLAEVKGHSLMIHAGGDNHSD- 159
Query: 75 DNAESVKTGNAGARLA 90
G G R+A
Sbjct: 160 ---HPAPLGGGGPRMA 172
Score = 77.1 bits (190), Expect = 3e-18
Identities = 19/79 (24%), Positives = 29/79 (36%), Gaps = 10/79 (12%)
Query: 115 TVTGPIMAVAILNGKDVKGTVLFLQPKPQGPVLISGNITGLTPGDHGFHIHEKGDISQGC 174
+ P+ + NG GTV + ++ + + L G HGFHIHEK
Sbjct: 24 KIVVPVQQLDPQNGNKDVGTVEITESA--YGLVFTPKLHDLAHGLHGFHIHEKPSCEPKE 81
Query: 175 A--------SMGPHYNPFN 185
G H++P
Sbjct: 82 KDGKLVAGLGAGGHWDPKQ 100
>1xtm_B Hypothetical superoxide dismutase-like protein YO; SOD, Cu-Zn SOD,
SOD-like, superoxide dismutase mutants, STRU genomics,
unknown function; 1.60A {Bacillus subtilis} PDB: 1xtl_B
1s4i_B 1u3n_A
Length = 175
Score = 84.7 bits (210), Expect = 4e-21
Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
Query: 113 MLTVTGPIMAVAILNGK-DVKGTVLFLQPKPQGPVLISGNITGLTPGDH-GFHIHEKGDI 170
++ + V ++N + G + + + I + L PG GFHIHEKG
Sbjct: 14 VVETSAFGHHVQLVNREGKAVGFIEIKE-SDDEGLDIHISANSLRPGASLGFHIHEKGSC 72
Query: 171 S-QGCASMGPHYNPFN 185
S G H+NP N
Sbjct: 73 VRPDFESAGGHFNPLN 88
Score = 84.3 bits (209), Expect = 6e-21
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 11/81 (13%)
Query: 15 PHGAPTDPDRHAGDLGSITADKNGFVSLQISDHVLSLDGP-----LTILGRGVVVHEKAD 69
HG HAGDL ++ +G V + ++ SL L G ++HE+AD
Sbjct: 90 EHGFNNPMGHHAGDLPNLEVGADGKVDVIMNAPDTSLKKGSKLNILDEDGSAFIIHEQAD 149
Query: 70 DLGRGDNAESVKTGNAGARLA 90
D + +GN+GAR+
Sbjct: 150 DYL------TNPSGNSGARIV 164
>1ej8_A Lys7; beta barrel, copper chaperone for SOD, domain 2; 1.55A
{Saccharomyces cerevisiae} SCOP: b.1.8.1
Length = 140
Score = 82.6 bits (204), Expect = 1e-20
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 13/76 (17%)
Query: 122 AVAILN-----------GKDVKGTVLFLQPKPQGPVLISGNITGL-TPGDHGFHIHEKGD 169
AVAIL V+G +Q L + G+ G++ IHEKGD
Sbjct: 3 AVAILETFQKYTIDQKKDTAVRGLARIVQVGE-NKTLFDITVNGVPEAGNYHASIHEKGD 61
Query: 170 ISQGCASMGPHYNPFN 185
+S+G S G ++ F+
Sbjct: 62 VSKGVESTGKVWHKFD 77
Score = 47.9 bits (114), Expect = 1e-07
Identities = 7/68 (10%), Positives = 16/68 (23%), Gaps = 5/68 (7%)
Query: 15 PHGAPTDPDRHAGDLGSITADKNGFVSLQISDHVLSLDGPLTILGRGVVVHEKADDLGRG 74
D KN + L ++GR V+ + +
Sbjct: 71 KVWHKFDEPI--ECFNESDLGKNLYSGKTFLSAPLPTWQ---LIGRSFVISKSLNHPENE 125
Query: 75 DNAESVKT 82
++ +
Sbjct: 126 PSSVKDYS 133
>2jlp_A Extracellular superoxide dismutase (Cu-Zn); glycolisation,
oxidoreductase, heparin binding, heparin-BIND oxidative
stress, antioxidant; 1.70A {Homo sapiens}
Length = 222
Score = 82.5 bits (203), Expect = 6e-20
Identities = 32/75 (42%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 16 HGAPTDPDRHAGDLGSITADKNGFVSLQISDHVLSLDGPLTILGRGVVVHEKADDLGRGD 75
+ +H GD G+ +G + + SL GP +I+GR VVVH DDLGRG
Sbjct: 115 NPLAVPHPQHPGDFGNFAVR-DGSLWRYRAGLAASLAGPHSIVGRAVVVHAGEDDLGRGG 173
Query: 76 NAESVKTGNAGARLA 90
N SV+ GNAG RLA
Sbjct: 174 NQASVENGNAGRRLA 188
Score = 79.4 bits (195), Expect = 9e-19
Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
Query: 119 PIMAVAILNGKD--VKGTVLFLQPKPQGPVLISGNITGL----TPGDHGFHIHEKGDISQ 172
+ A L+ V G VLF Q P+ + + G H+H+ GD+SQ
Sbjct: 46 QVQPSATLDAAQPRVTGVVLFRQLAPRAKLDAFFALEGFPTEPNSSSRAIHVHQFGDLSQ 105
Query: 173 GCASMGPHYNPFN 185
GC S GPHYNP
Sbjct: 106 GCESTGPHYNPLA 118
>1qup_A Superoxide dismutase 1 copper chaperone; two domains,
beta-alpha-beta-BETA-alpha-beta and beta barrel; 1.80A
{Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1
Length = 222
Score = 70.1 bits (171), Expect = 4e-15
Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 2/86 (2%)
Query: 101 PALLGLDGNWNLMLTVTGPIMAVAILNGKDVKGTVLFLQPKPQGPVLISGNITGL-TPGD 159
G + + + T + V+G +Q + L + G+ G+
Sbjct: 69 IRGAGKPNSSAVAILETFQKYTIDQKKDTAVRGLARIVQ-VGENKTLFDITVNGVPEAGN 127
Query: 160 HGFHIHEKGDISQGCASMGPHYNPFN 185
+ IHEKGD+S+G S G ++ F+
Sbjct: 128 YHASIHEKGDVSKGVESTGKVWHKFD 153
Score = 55.1 bits (132), Expect = 1e-09
Identities = 9/77 (11%), Positives = 21/77 (27%), Gaps = 16/77 (20%)
Query: 14 YPHGAPTDPDRHAGDLGSITADKNGFVSLQISDHVLSLDGPLTILGRGVVVHEKADDLGR 73
+ P + + DLG F+S + ++GR V+ + +
Sbjct: 150 HKFDEPIE-CFNESDLGKNLYSGKTFLSAPLPTW--------QLIGRSFVISKSLNHPEN 200
Query: 74 GDNAESVKTGNAGARLA 90
+ +
Sbjct: 201 -------EPSSVKDYSF 210
>1jk9_B CCS, copper chaperone for superoxide dismutase; protein-protein
complex, heterodimer, metallochaperone, amyotrophic
lateral sclerosis; 2.90A {Saccharomyces cerevisiae}
SCOP: b.1.8.1 d.58.17.1
Length = 249
Score = 68.6 bits (167), Expect = 2e-14
Identities = 17/81 (20%), Positives = 31/81 (38%)
Query: 105 GLDGNWNLMLTVTGPIMAVAILNGKDVKGTVLFLQPKPQGPVLISGNITGLTPGDHGFHI 164
G + + + T + V+G +Q + G++ I
Sbjct: 74 GKPNSSAVAILETFQKYTIDQKKDTAVRGLARIVQVGENKTLFDITVNGVPEAGNYHASI 133
Query: 165 HEKGDISQGCASMGPHYNPFN 185
HEKGD+S+G S G ++ F+
Sbjct: 134 HEKGDVSKGVESTGKVWHKFD 154
Score = 52.8 bits (126), Expect = 7e-09
Identities = 9/77 (11%), Positives = 21/77 (27%), Gaps = 16/77 (20%)
Query: 14 YPHGAPTDPDRHAGDLGSITADKNGFVSLQISDHVLSLDGPLTILGRGVVVHEKADDLGR 73
+ P + + DLG F+S + ++GR V+ + +
Sbjct: 151 HKFDEPIE-CFNESDLGKNLYSGKTFLSAPLPTW--------QLIGRSFVISKSLNHPEN 201
Query: 74 GDNAESVKTGNAGARLA 90
+ +
Sbjct: 202 -------EPSSVKDYSF 211
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.7 bits (71), Expect = 0.14
Identities = 18/99 (18%), Positives = 32/99 (32%), Gaps = 24/99 (24%)
Query: 73 RGDNAESVK--TGNAGARLAQFIHKNPGLNPALLGLDGNWNLMLTVTGPIMAVAILNGKD 130
R D++ ++K + A L + + P N LL L N N +
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYEN-CLLVLLNVQN-----------AKAWNAFN 263
Query: 131 VKGTVL----------FLQPKPQGPVLISGNITGLTPGD 159
+ +L FL + + + LTP +
Sbjct: 264 LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.6 bits (71), Expect = 0.15
Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 3/28 (10%)
Query: 47 HVLSLDGPLTILGRGVVVHEKADDLGRG 74
H+L GP G GV+ H D G G
Sbjct: 500 HILDF-GPGGASGLGVLTHRNKD--GTG 524
Score = 30.0 bits (67), Expect = 0.57
Identities = 41/232 (17%), Positives = 71/232 (30%), Gaps = 78/232 (33%)
Query: 13 IYPHGAP-----TDPDRHAGD--LGSITADKNGFVSL------QISD-----HVLSLDGP 54
++ G +P L SI +S Q++ +L P
Sbjct: 208 VFTQGLNILEWLENPSNTPDKDYLLSIP------ISCPLIGVIQLAHYVVTAKLLGFT-P 260
Query: 55 ---------LTILGRGVVVHEKADDLGRGDNAESVKTGNA----------GARLAQFIHK 95
T +G+V A + D+ ES + G R +
Sbjct: 261 GELRSYLKGATGHSQGLVT---AVAIAETDSWESFFV-SVRKAITVLFFIGVR-CYEAYP 315
Query: 96 NPGLNPALL-----GLDGNWNLMLTVTGPIMAVAILNGKDVKGTVLFLQPKPQ------- 143
N L P++L +G + ML+++ V T L Q
Sbjct: 316 NTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQ---DYVNKTNSHLPAGKQVEISLVN 372
Query: 144 GP--VLISGNITGLTPGDHGFHIHEKGDISQGCASMGPHYN--PFNIMSRKL 191
G +++SG L +G ++ + + A G + PF+ RKL
Sbjct: 373 GAKNLVVSGPPQSL----YGLNLT----LRKAKAPSGLDQSRIPFS--ERKL 414
>3r4z_A Glycosyl hydrolase family 32, N terminal; AGAR metabolism,
neoagarobiose, 3,6-anhydro-L-galactose, ALP
galactopyranose, bioenergy; HET: GLA; 1.55A
{Saccharophagus degradans} PDB: 3r4y_A*
Length = 374
Score = 27.8 bits (61), Expect = 2.3
Identities = 26/174 (14%), Positives = 47/174 (27%), Gaps = 22/174 (12%)
Query: 11 YLIYPHGAPTDPDRHAGDLGSITADKNGFVSLQISDHVLSLDGPLTILGRGVVVHEKADD 70
YL+Y +R + +D S GP T ++ E
Sbjct: 138 YLVYQTVKAPYLNRSLEHIAIAYSD--------------SPFGPWTKSDAPILSPENDGV 183
Query: 71 LGRGDNAESVKTGNAGARLAQFIHKNPGLNPALLGLDGNWNLMLTVTGPIMAVAILNGKD 130
++ + + +P L+ + + L G M ++ G
Sbjct: 184 WDTDEDNRFLVKEK------GSFDSHKVHDPCLMFFNNRF--YLYYKGETMGESMNMGGR 235
Query: 131 VKGTVLFLQPKPQGPVLISGNITGLTPGDHGFHIHEKGDISQGCASMGPHYNPF 184
+ + P GP S G KG ++ + GP N
Sbjct: 236 EIKHGVAIADSPLGPYTKSEYNPITNSGHEVAVWPYKGGMATMLTTDGPEKNTC 289
>2zxq_A Endo-alpha-N-acetylgalactosaminidase; broken TIM barrel,
glycosidase, hydrolase; 2.00A {Bifidobacterium longum}
Length = 1376
Score = 26.5 bits (57), Expect = 7.0
Identities = 15/65 (23%), Positives = 22/65 (33%), Gaps = 12/65 (18%)
Query: 95 KNPGLNPALLGLDGNWNLMLTVTGPIMAVAILNGKDVKGTVLFLQPKPQGPVLISGNITG 154
+ G N L NW TV+G A + + + G V +S +T
Sbjct: 787 VDAGFNGGSNTLTDNW----TVSGSGKAEVEGDNNAML--------RLTGKVDVSQRLTD 834
Query: 155 LTPGD 159
L G
Sbjct: 835 LKAGQ 839
>3ecq_A Protein SPR0328, endo-alpha-N-acetylgalactosaminidase; distorted
(beta/alpha)8 (TIM) barrel glycoside hydrolase DOM WALL;
2.90A {Streptococcus pneumoniae}
Length = 1531
Score = 26.0 bits (56), Expect = 9.7
Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 9/64 (14%)
Query: 95 KNPGLNPALLGLDGNWNLMLTVTGPIMAVAILNGKDVKGTVLFLQPKPQGPVLISGNITG 154
+ G N L +W T++G I+ + + + V ++ +TG
Sbjct: 1024 YDQGFNSGTLK---HW----TISGDASKAEIVKSQG--ANDMLRIQGNKEKVSLTQKLTG 1074
Query: 155 LTPG 158
L P
Sbjct: 1075 LKPN 1078
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.140 0.424
Gapped
Lambda K H
0.267 0.0585 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,045,063
Number of extensions: 183788
Number of successful extensions: 474
Number of sequences better than 10.0: 1
Number of HSP's gapped: 429
Number of HSP's successfully gapped: 58
Length of query: 193
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 105
Effective length of database: 4,244,745
Effective search space: 445698225
Effective search space used: 445698225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.3 bits)