RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9876
(193 letters)
>d2c9va1 b.1.8.1 (A:1-153) Cu,Zn superoxide dismutase, SOD {Human
(Homo sapiens) [TaxId: 9606]}
Length = 153
Score = 82.0 bits (202), Expect = 1e-20
Identities = 47/77 (61%), Positives = 57/77 (74%)
Query: 14 YPHGAPTDPDRHAGDLGSITADKNGFVSLQISDHVLSLDGPLTILGRGVVVHEKADDLGR 73
HG P D +RH GDLG++TADK+G + I D V+SL G I+GR +VVHEKADDLG+
Sbjct: 69 RKHGGPKDEERHVGDLGNVTADKDGVADVSIEDSVISLSGDHCIIGRTLVVHEKADDLGK 128
Query: 74 GDNAESVKTGNAGARLA 90
G N ES KTGNAG+RLA
Sbjct: 129 GGNEESTKTGNAGSRLA 145
Score = 71.6 bits (175), Expect = 1e-16
Identities = 33/65 (50%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 122 AVAILNGK-DVKGTVLFLQPKPQGPVLISGNITGLTPGDHGFHIHEKGDISQGCASMGPH 180
AV +L G V+G + F Q + GPV + G+I GLT G HGFH+HE GD + GC S GPH
Sbjct: 4 AVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSAGPH 63
Query: 181 YNPFN 185
+NP +
Sbjct: 64 FNPLS 68
>d1f1ga_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 153
Score = 80.5 bits (198), Expect = 4e-20
Identities = 39/75 (52%), Positives = 51/75 (68%)
Query: 16 HGAPTDPDRHAGDLGSITADKNGFVSLQISDHVLSLDGPLTILGRGVVVHEKADDLGRGD 75
HGAPTD RH GD+G++ D+NG D ++ L GP +++GR VV+H DDLG+GD
Sbjct: 71 HGAPTDEVRHVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVIHAGQDDLGKGD 130
Query: 76 NAESVKTGNAGARLA 90
ES+KTGNAG R A
Sbjct: 131 TEESLKTGNAGPRPA 145
Score = 65.9 bits (160), Expect = 1e-14
Identities = 32/66 (48%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 122 AVAILNGK-DVKGTVLFLQPKPQGPVLISGNITGLTP-GDHGFHIHEKGDISQGCASMGP 179
AVA+L G V G V F Q P +S I G +P + GFHIHE GD + GC S GP
Sbjct: 3 AVAVLKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFGDATNGCVSAGP 62
Query: 180 HYNPFN 185
H+NPF
Sbjct: 63 HFNPFK 68
>d1srda_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Spinach
(Spinacia oleracea) [TaxId: 3562]}
Length = 154
Score = 80.1 bits (197), Expect = 5e-20
Identities = 40/76 (52%), Positives = 51/76 (67%)
Query: 15 PHGAPTDPDRHAGDLGSITADKNGFVSLQISDHVLSLDGPLTILGRGVVVHEKADDLGRG 74
HGAP D RHAGDLG+I A+ +G I D+ + L GP +++GR +VVHE DDLG+G
Sbjct: 70 THGAPEDEVRHAGDLGNIVANTDGVAEATIVDNQIPLTGPNSVVGRALVVHELEDDLGKG 129
Query: 75 DNAESVKTGNAGARLA 90
+ S TGNAG RLA
Sbjct: 130 GHELSPTTGNAGGRLA 145
Score = 60.9 bits (147), Expect = 9e-13
Identities = 32/65 (49%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 122 AVAILNGK-DVKGTVLFLQPKPQGPVLISGNITGLTPGDHGFHIHEKGDISQGCASMGPH 180
AVA+L G +V+G V Q + GP ++ I+GL PG HGFH+HE GD + GC S GPH
Sbjct: 5 AVAVLKGTSNVEGVVTLTQ-EDDGPTTVNVRISGLAPGKHGFHLHEFGDTTNGCMSTGPH 63
Query: 181 YNPFN 185
+NP
Sbjct: 64 FNPDK 68
>d1to4a_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Blood fluke
(Schistosoma mansoni) [TaxId: 6183]}
Length = 156
Score = 80.1 bits (197), Expect = 6e-20
Identities = 38/75 (50%), Positives = 50/75 (66%)
Query: 16 HGAPTDPDRHAGDLGSITADKNGFVSLQISDHVLSLDGPLTILGRGVVVHEKADDLGRGD 75
HGAP D RH GDLG++ A +G +D ++SL+G +I+GR +V+HE DDLGRG
Sbjct: 73 HGAPEDSIRHVGDLGNVVAGADGNAVYNATDKLISLNGSHSIIGRSMVIHENEDDLGRGG 132
Query: 76 NAESVKTGNAGARLA 90
+ S TGNAG RLA
Sbjct: 133 HELSKVTGNAGGRLA 147
Score = 69.7 bits (170), Expect = 5e-16
Identities = 30/65 (46%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 122 AVAILNGKD-VKGTVLFLQPKPQGPVLISGNITGLTPGDHGFHIHEKGDISQGCASMGPH 180
AV ++ G VKG V F Q GPV + +GL G HGFH+HE GD + GC S G H
Sbjct: 6 AVCVMTGTAGVKGVVKFTQETDNGPVHVHAEFSGLKAGKHGFHVHEFGDTTNGCTSAGAH 65
Query: 181 YNPFN 185
+NP
Sbjct: 66 FNPTK 70
>d1xsoa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {African
clawed frog (Xenopus laevis) [TaxId: 8355]}
Length = 150
Score = 76.3 bits (187), Expect = 1e-18
Identities = 47/76 (61%), Positives = 58/76 (76%), Gaps = 1/76 (1%)
Query: 15 PHGAPTDPDRHAGDLGSITADKNGFVSLQISDHVLSLDGPLTILGRGVVVHEKADDLGRG 74
HGAP D DRH GDLG++TA+ G +I+D ++SL GP +I+GR VVHEKADDLG+G
Sbjct: 68 NHGAPGDTDRHVGDLGNVTAE-GGVAQFKITDSLISLKGPNSIIGRTAVVHEKADDLGKG 126
Query: 75 DNAESVKTGNAGARLA 90
N ES+KTGNAG RLA
Sbjct: 127 GNDESLKTGNAGGRLA 142
Score = 65.9 bits (160), Expect = 1e-14
Identities = 35/67 (52%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Query: 120 IMAVAILNGK-DVKGTVLFLQPKPQGPVLISGNITGLTPGDHGFHIHEKGDISQGCASMG 178
+ AV +L G DVKG V F Q + +G V + G I GLT G HGFHIH GD + GC S G
Sbjct: 1 VKAVCVLAGSGDVKGVVHFEQ-QDEGAVSVEGKIEGLTDGLHGFHIHVFGDNTNGCMSAG 59
Query: 179 PHYNPFN 185
H+NP N
Sbjct: 60 SHFNPEN 66
>d1do5a_ b.1.8.1 (A:) Copper chaperone for superoxide dismutase,
C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 154
Score = 73.2 bits (179), Expect = 2e-17
Identities = 33/76 (43%), Positives = 46/76 (60%), Gaps = 3/76 (3%)
Query: 15 PHGAPTDPDRHAGDLGSITADKNGFVSLQISDHVLSLDGPLTILGRGVVVHEKADDLGRG 74
HG P D DRH GDLG++ AD +G ++ D L + ++GR +++ E DDLGRG
Sbjct: 71 SHGGPQDSDRHRGDLGNVRADADGRAIFRMEDEQLKV---WDVIGRSLIIDEGEDDLGRG 127
Query: 75 DNAESVKTGNAGARLA 90
+ S TGN+G RLA
Sbjct: 128 GHPLSKITGNSGERLA 143
Score = 65.1 bits (158), Expect = 3e-14
Identities = 33/66 (50%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 121 MAVAILNGK-DVKGTVLFLQPKPQGPVLISGNITGLTPGDHGFHIHEKGDISQGCASMGP 179
AVAIL G V+G V FLQ P LI G I GL PG HG H+H+ GD++ C S G
Sbjct: 5 AAVAILGGPGTVQGVVRFLQLTP-ERCLIEGTIDGLEPGLHGLHVHQYGDLTNNCNSCGN 63
Query: 180 HYNPFN 185
H+NP
Sbjct: 64 HFNPDG 69
>d1pzsa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 171
Score = 68.9 bits (168), Expect = 1e-15
Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 13/88 (14%)
Query: 16 HGAPTDPDRHAGDLGSITADKNGFVSLQISDHVLSLDGPLTILGRGVVVHEKADDLGR-- 73
H +GDL S+ +G L + ++D L+ +++H AD+
Sbjct: 77 HVPGHTGTPASGDLASLQVRGDGSAMLVTTTDAFTMDDLLSGAKTAIIIHAGADNFANIP 136
Query: 74 -----------GDNAESVKTGNAGARLA 90
G + ++ TG+AG R+A
Sbjct: 137 PERYVQVNGTPGPDETTLTTGDAGKRVA 164
Score = 52.0 bits (124), Expect = 2e-09
Identities = 20/78 (25%), Positives = 25/78 (32%), Gaps = 14/78 (17%)
Query: 122 AVAILNGKD--VKGTVLFLQPKPQGPVLIS-GNITGLTPGDHGFHIHEKGDISQGCA--- 175
+ L D T F V I+ + LTPG HG HIH+ G
Sbjct: 3 LTSTLTAPDGTKVATAKFEFANGYATVTIATTGVGKLTPGFHGLHIHQVGKCEPNSVAPT 62
Query: 176 --------SMGPHYNPFN 185
S G HY+
Sbjct: 63 GGAPGNFLSAGGHYHVPG 80
>d1ej8a_ b.1.8.1 (A:) Copper chaperone for superoxide dismutase,
C-terminal domain {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 140
Score = 66.2 bits (161), Expect = 6e-15
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 13/76 (17%)
Query: 122 AVAILN-----------GKDVKGTVLFLQPKPQGPVLISGNITGL-TPGDHGFHIHEKGD 169
AVAIL V+G +Q L + G+ G++ IHEKGD
Sbjct: 3 AVAILETFQKYTIDQKKDTAVRGLARIVQVGE-NKTLFDITVNGVPEAGNYHASIHEKGD 61
Query: 170 ISQGCASMGPHYNPFN 185
+S+G S G ++ F+
Sbjct: 62 VSKGVESTGKVWHKFD 77
Score = 45.7 bits (108), Expect = 3e-07
Identities = 7/60 (11%), Positives = 16/60 (26%), Gaps = 3/60 (5%)
Query: 23 DRHAGDLGSITADKNGFVSLQISDHVLSLDGPLTILGRGVVVHEKADDLGRGDNAESVKT 82
D KN + L ++GR V+ + + ++ +
Sbjct: 77 DEPIECFNESDLGKNLYSGKTFLSAPLPTW---QLIGRSFVISKSLNHPENEPSSVKDYS 133
>d1eqwa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Salmonella
typhimurium [TaxId: 90371]}
Length = 155
Score = 65.0 bits (158), Expect = 3e-14
Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 6/76 (7%)
Query: 15 PHGAPTDPDRHAGDLGSITADKNGFVSLQISDHVLSLDGPLTILGRGVVVHEKADDLGRG 74
H P + H GDL + + +G + + L + G +++H+ D+
Sbjct: 81 KHLGPYNDKGHLGDLPGLVVNADGTATYPLLAP--RLKSLSELKGHSLMIHKGGDNYSD- 137
Query: 75 DNAESVKTGNAGARLA 90
+ G GAR A
Sbjct: 138 ---KPAPLGGGGARFA 150
Score = 60.0 bits (145), Expect = 2e-12
Identities = 18/81 (22%), Positives = 29/81 (35%), Gaps = 10/81 (12%)
Query: 115 TVTGPIMAVAILNGKDVKGTVLFLQPKPQGPVLISGNITGLTPGDHGFHIHEKGDISQG- 173
T+T + + G + + +L + ++ GLTPG HGFH+H G
Sbjct: 2 TLTVKMNDALSSGTGENIGEITVSETP--YGLLFTPHLNGLTPGIHGFHVHTNPSCMPGM 59
Query: 174 -------CASMGPHYNPFNIM 187
G H +P
Sbjct: 60 KDGKEVPALMAGGHLDPEKTG 80
>d2apsa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD
{Actinobacillus pleuropneumoniae [TaxId: 715]}
Length = 155
Score = 64.3 bits (156), Expect = 5e-14
Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 6/76 (7%)
Query: 15 PHGAPTDPDRHAGDLGSITADKNGFVSLQISDHVLSLDGPLTILGRGVVVHEKADDLGRG 74
HG P + H GDL ++ + +G + + L + G +++HE D+
Sbjct: 81 QHGYPWSDNAHLGDLPALFVEHDGSATNPVLA--PRLKKLDEVKGHSLMIHEGGDNHSD- 137
Query: 75 DNAESVKTGNAGARLA 90
G G R+A
Sbjct: 138 ---HPAPLGGGGPRMA 150
Score = 61.9 bits (150), Expect = 4e-13
Identities = 16/84 (19%), Positives = 29/84 (34%), Gaps = 10/84 (11%)
Query: 115 TVTGPIMAVAILNGKDVKGTVLFLQPKPQGPVLISGNITGLTPGDHGFHIHEKGDIS--- 171
+ + + + G GTV + ++ + ++ GL G HGFHIH+
Sbjct: 2 KLVVQVQQLDPVKGNKDVGTVEITESA--YGLVFTPHLHGLAQGLHGFHIHQNPSCEPKE 59
Query: 172 -----QGCASMGPHYNPFNIMSRK 190
G H++P
Sbjct: 60 KDGKLVAGLGAGGHWDPKETKQHG 83
>d1oala_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD
{Photobacterium leiognathi [TaxId: 553611]}
Length = 151
Score = 63.5 bits (154), Expect = 1e-13
Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 7/87 (8%)
Query: 4 TGGLNQVYLIYPHGAPTDPDRHAGDLGSITADKNGFVSLQISDHVLSLDGPLTILGRGVV 63
GG HG P D H GDL ++ NG + + L+L + G ++
Sbjct: 67 AGGHYDPEHTNKHGFPWTDDNHKGDLPALFVSANGLATNPVLAPRLTLKE---LKGHAIM 123
Query: 64 VHEKADDLGRGDNAESVKTGNAGARLA 90
+H D+ G GAR+A
Sbjct: 124 IHAGGDNHSD----MPKALGGGGARVA 146
Score = 59.6 bits (144), Expect = 3e-12
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 10/74 (13%)
Query: 120 IMAVAILNGKDVKGTVLFLQPKPQGPVLISGNITGLTPGDHGFHIHEKGDISQG------ 173
+ + L GT+ Q K V+ + LTPG+HGFHIH+ G +
Sbjct: 4 TVKMTDLQTGKPVGTIELSQNK--YGVVFIPELADLTPGEHGFHIHQNGSCASSEKDGKV 61
Query: 174 --CASMGPHYNPFN 185
+ G HY+P +
Sbjct: 62 VLGGAAGGHYDPEH 75
>d1esoa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Escherichia
coli [TaxId: 562]}
Length = 154
Score = 59.3 bits (143), Expect = 3e-12
Identities = 14/77 (18%), Positives = 27/77 (35%), Gaps = 6/77 (7%)
Query: 14 YPHGAPTDPDRHAGDLGSITADKNGFVSLQISDHVLSLDGPLTILGRGVVVHEKADDLGR 73
+ H GDL ++ + +G + + L I + ++VH D++
Sbjct: 79 TGKHEGPEGAGHLGDLPALVVNNDGKATDAVIAP--RLKSLDEIKDKALMVHVGGDNMSD 136
Query: 74 GDNAESVKTGNAGARLA 90
+ G G R A
Sbjct: 137 ----QPKPLGGGGERYA 149
Score = 55.4 bits (133), Expect = 1e-10
Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 10/64 (15%)
Query: 130 DVKGTVLFLQPKPQGPVLISGNITGLTPGDHGFHIHEKGDISQG--------CASMGPHY 181
G+V + + S ++ L PG+HGFHIH KG S G H
Sbjct: 17 QSIGSVTITETD--KGLEFSPDLKALPPGEHGFHIHAKGSCQPATKDGKASAAESAGGHL 74
Query: 182 NPFN 185
+P N
Sbjct: 75 DPQN 78
>d1f07a_ c.1.16.3 (A:) Coenzyme F420 dependent
tetrahydromethanopterin reductase {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 321
Score = 28.1 bits (61), Expect = 0.70
Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 2/41 (4%)
Query: 19 PTDPDRHAGDLGSITADKNGFVSLQISDHVLSLDGPLTILG 59
P +P L A+ GF I+DH + + L
Sbjct: 9 PNEPIEKIVKL-VKLAEDVGFEYAWITDHYNNKN-VYETLA 47
>d1ezwa_ c.1.16.3 (A:) Coenzyme F420 dependent
tetrahydromethanopterin reductase {Archaeon
Methanopyrus kandleri [TaxId: 2320]}
Length = 347
Score = 27.8 bits (60), Expect = 0.79
Identities = 11/41 (26%), Positives = 15/41 (36%), Gaps = 2/41 (4%)
Query: 19 PTDPDRHAGDLGSITADKNGFVSLQISDHVLSLDGPLTILG 59
P D L A+ NGF I DH + + +L
Sbjct: 11 PDDKPTKIAHL-IKVAEDNGFEYAWICDHYNNYS-YMGVLT 49
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 95
Score = 26.4 bits (58), Expect = 0.92
Identities = 11/54 (20%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 140 PKPQGPVLISGNITGLTPGDHGFHIHEKGD--ISQGCASMGPHYNPFNIMSRKL 191
PK + + N + G+ + D I C G + F+++S++L
Sbjct: 12 PKASEATVCANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQL 65
>d1lucb_ c.1.16.1 (B:) Bacterial luciferase beta chain, LuxB
{Vibrio harveyi [TaxId: 669]}
Length = 320
Score = 25.7 bits (55), Expect = 3.5
Identities = 10/56 (17%), Positives = 24/56 (42%), Gaps = 6/56 (10%)
Query: 10 VYLIYPHGAPTDPDRHAGDLGSI--TADKNGFVSLQISDHVLSLDG----PLTILG 59
++ + + D+ ++ D+ F +L + ++ S +G PLT+ G
Sbjct: 5 LFFLNFMNSKRSSDQVIEEMLDTAHYVDQLKFDTLAVYENHFSNNGVVGAPLTVAG 60
>d1r8se_ a.118.3.1 (E:) Exchange factor ARNO {Human (Homo sapiens)
[TaxId: 9606]}
Length = 187
Score = 24.8 bits (54), Expect = 5.4
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 89 LAQFIHKNPGLNPALLGL 106
+A+F++K GLN +G
Sbjct: 35 IARFLYKGEGLNKTAIGD 52
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.140 0.424
Gapped
Lambda K H
0.267 0.0502 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 721,023
Number of extensions: 31430
Number of successful extensions: 133
Number of sequences better than 10.0: 1
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 33
Length of query: 193
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 112
Effective length of database: 1,295,466
Effective search space: 145092192
Effective search space used: 145092192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.6 bits)