BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9877
(1447 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q76634|POL_HV2UC Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype
B (isolate UC1) GN=gag-pol PE=3 SV=3
Length = 1471
Score = 40.8 bits (94), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 257 SQRQDIIRNKQVCYACLKFGHRVSRCRTKSRLKCEKCGSR-HLTILCPRDSKSDIVTRTF 315
+Q++ R C+ C K GH +CR R C KCG + H+ CP + RT
Sbjct: 378 AQQKAGKRGTVTCWNCGKVGHTAKQCRAPRRQGCWKCGKQGHIMSKCPERQAGFLRVRTL 437
>sp|P36627|BYR3_SCHPO Cellular nucleic acid-binding protein homolog
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=byr3 PE=4 SV=1
Length = 179
Score = 39.3 bits (90), Expect = 0.21, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 36/87 (41%), Gaps = 19/87 (21%)
Query: 220 EKVPTATGLVNSTPKGESCIFCSQ-GHYSGDCQKDMTLSQRQDIIRNKQVCYACLKFGHR 278
E VPT +T G C C + GH + +C K +CY C + GH+
Sbjct: 4 ESVPTVP---QTTRPGPRCYNCGENGHQARECTKG-------------SICYNCNQTGHK 47
Query: 279 VSRCRTKSRLK-CEKCGSR-HLTILCP 303
S C + K C CG+ HL CP
Sbjct: 48 ASECTEPQQEKTCYACGTAGHLVRDCP 74
Score = 37.4 bits (85), Expect = 0.94, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 41/96 (42%), Gaps = 11/96 (11%)
Query: 224 TATGLVNSTP------KGESCIFCSQ-GHYSGDCQKDMTLSQ-RQDIIRNKQVCYACLKF 275
TA LV P +G C C + GH + DC+ + S R R+ CYAC +
Sbjct: 65 TAGHLVRDCPSSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSY 124
Query: 276 GHRVSRCRTKSRLKCEKCGS-RHLTILCPRDSKSDI 310
GH+ C +KC CG H + C + S +
Sbjct: 125 GHQARDCTMG--VKCYSCGKIGHRSFECQQASDGQL 158
>sp|P62634|CNBP_RAT Cellular nucleic acid-binding protein OS=Rattus norvegicus GN=Cnbp
PE=2 SV=1
Length = 177
Score = 38.9 bits (89), Expect = 0.30, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 16/74 (21%)
Query: 236 ESCIFCSQ-GHYSGDCQKDMTLSQRQDIIRNKQVCYACLKFGHRVSRCRTKSRLKCEKCG 294
+ C C + GH + DC ++Q CY+C +FGH C +++KC +CG
Sbjct: 96 QCCYNCGKPGHLARDCDH-----------ADEQKCYSCGEFGHIQKDC---TKVKCYRCG 141
Query: 295 -SRHLTILCPRDSK 307
+ H+ I C + S+
Sbjct: 142 ETGHVAINCSKTSE 155
>sp|Q5R5R5|CNBP_PONAB Cellular nucleic acid-binding protein OS=Pongo abelii GN=CNBP PE=2
SV=1
Length = 177
Score = 38.9 bits (89), Expect = 0.30, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 16/74 (21%)
Query: 236 ESCIFCSQ-GHYSGDCQKDMTLSQRQDIIRNKQVCYACLKFGHRVSRCRTKSRLKCEKCG 294
+ C C + GH + DC ++Q CY+C +FGH C +++KC +CG
Sbjct: 96 QCCYNCGKPGHLARDCDH-----------ADEQKCYSCGEFGHIQKDC---TKVKCYRCG 141
Query: 295 -SRHLTILCPRDSK 307
+ H+ I C + S+
Sbjct: 142 ETGHVAINCSKTSE 155
>sp|P62633|CNBP_HUMAN Cellular nucleic acid-binding protein OS=Homo sapiens GN=CNBP PE=1
SV=1
Length = 177
Score = 38.9 bits (89), Expect = 0.30, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 16/74 (21%)
Query: 236 ESCIFCSQ-GHYSGDCQKDMTLSQRQDIIRNKQVCYACLKFGHRVSRCRTKSRLKCEKCG 294
+ C C + GH + DC ++Q CY+C +FGH C +++KC +CG
Sbjct: 96 QCCYNCGKPGHLARDCDH-----------ADEQKCYSCGEFGHIQKDC---TKVKCYRCG 141
Query: 295 -SRHLTILCPRDSK 307
+ H+ I C + S+
Sbjct: 142 ETGHVAINCSKTSE 155
>sp|P15833|POL_HV2D2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype
B (isolate D205) GN=gag-pol PE=3 SV=3
Length = 1465
Score = 38.9 bits (89), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 264 RNKQVCYACLKFGHRVSRCRTKSRLKCEKCG-SRHLTILCPRDSKSDIVTRTF 315
R C+ C K GH +CR R C KCG + H+ CP + RT
Sbjct: 385 RGTVTCWNCGKQGHTARQCRAPRRQGCWKCGKTGHIMSKCPERQAGFLRVRTL 437
>sp|P53996|CNBP_MOUSE Cellular nucleic acid-binding protein OS=Mus musculus GN=Cnbp PE=2
SV=2
Length = 178
Score = 38.9 bits (89), Expect = 0.34, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 16/74 (21%)
Query: 236 ESCIFCSQ-GHYSGDCQKDMTLSQRQDIIRNKQVCYACLKFGHRVSRCRTKSRLKCEKCG 294
+ C C + GH + DC ++Q CY+C +FGH C +++KC +CG
Sbjct: 97 QCCYNCGKPGHLARDCDH-----------ADEQKCYSCGEFGHIQKDC---TKVKCYRCG 142
Query: 295 -SRHLTILCPRDSK 307
+ H+ I C + S+
Sbjct: 143 ETGHVAINCSKTSE 156
Score = 35.8 bits (81), Expect = 2.4, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 9/60 (15%)
Query: 236 ESCIFCSQG-HYSGDCQKDMTLSQRQDIIRNKQVCYACLKFGHRVSRCRTKSRLKCEKCG 294
E+C C +G H + DC++ +R+ +Q CY C K GH C KC CG
Sbjct: 73 EACYNCGRGGHIAKDCKE----PKRE----REQCCYNCGKPGHLARDCDHADEQKCYSCG 124
>sp|Q3T0Q6|CNBP_BOVIN Cellular nucleic acid-binding protein OS=Bos taurus GN=CNBP PE=2
SV=1
Length = 170
Score = 38.9 bits (89), Expect = 0.34, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 16/74 (21%)
Query: 236 ESCIFCSQ-GHYSGDCQKDMTLSQRQDIIRNKQVCYACLKFGHRVSRCRTKSRLKCEKCG 294
+ C C + GH + DC ++Q CY+C +FGH C +++KC +CG
Sbjct: 89 QCCYNCGKPGHLARDCDH-----------ADEQKCYSCGEFGHIQKDC---TKVKCYRCG 134
Query: 295 -SRHLTILCPRDSK 307
+ H+ I C + S+
Sbjct: 135 ETGHVAINCSKTSE 148
>sp|P18042|POL_HV2G1 Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype
A (isolate Ghana-1) GN=gag-pol PE=1 SV=4
Length = 1464
Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 257 SQRQDIIRNKQVCYACLKFGHRVSRCRTKSRLKCEKCG-SRHLTILCP 303
+Q++ +IR C+ C K GH +CR R C KCG + H+ CP
Sbjct: 384 AQQRKVIR----CWNCGKEGHSARQCRAPRRQGCWKCGKTGHVMAKCP 427
>sp|O42395|CNBP_CHICK Cellular nucleic acid-binding protein OS=Gallus gallus GN=CNBP PE=2
SV=1
Length = 172
Score = 38.9 bits (89), Expect = 0.36, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 16/74 (21%)
Query: 236 ESCIFCSQ-GHYSGDCQKDMTLSQRQDIIRNKQVCYACLKFGHRVSRCRTKSRLKCEKCG 294
+ C C + GH + DC ++Q CY+C +FGH C +++KC +CG
Sbjct: 91 QCCYNCGKPGHLARDCDH-----------ADEQKCYSCGEFGHIQKDC---TKVKCYRCG 136
Query: 295 -SRHLTILCPRDSK 307
+ H+ I C + S+
Sbjct: 137 ETGHVAINCSKTSE 150
>sp|P17757|POL_HV2D1 Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype
A (isolate D194) GN=gag-pol PE=3 SV=3
Length = 1462
Score = 38.5 bits (88), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 257 SQRQDIIRNKQVCYACLKFGHRVSRCRTKSRLKCEKCG-SRHLTILCP 303
+Q++ IR C+ C K GH +CR R C KCG S H+ CP
Sbjct: 383 AQQRRAIR----CWNCGKEGHSAKQCRAPRRQGCWKCGKSGHIMANCP 426
>sp|Q8WW36|ZCH13_HUMAN Zinc finger CCHC domain-containing protein 13 OS=Homo sapiens
GN=ZCCHC13 PE=2 SV=1
Length = 166
Score = 38.5 bits (88), Expect = 0.45, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 39/86 (45%), Gaps = 20/86 (23%)
Query: 235 GESCIFCSQ-GHYSGDCQKDMTLSQRQ-------------DIIRNK-QVCYACLKFGHRV 279
G C C + GH + DC KD +RQ D R K Q CY+C K GH
Sbjct: 64 GNICYNCGRSGHIAKDC-KDPKRERRQHCYTCGRLGHLARDCDRQKEQKCYSCGKLGHIQ 122
Query: 280 SRCRTKSRLKCEKCGS-RHLTILCPR 304
C +++KC +CG H+ I C +
Sbjct: 123 KDC---AQVKCYRCGEIGHVAINCSK 145
>sp|Q76633|GAG_HV2UC Gag polyprotein OS=Human immunodeficiency virus type 2 subtype B
(isolate UC1) GN=gag PE=3 SV=3
Length = 521
Score = 38.1 bits (87), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 257 SQRQDIIRNKQVCYACLKFGHRVSRCRTKSRLKCEKCGSR-HLTILCP 303
+Q++ R C+ C K GH +CR R C KCG + H+ CP
Sbjct: 378 AQQKAGKRGTVTCWNCGKVGHTAKQCRAPRRQGCWKCGKQGHIMSKCP 425
>sp|P12451|POL_HV2SB Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype
A (isolate SBLISY) GN=gag-pol PE=3 SV=3
Length = 1462
Score = 38.1 bits (87), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 269 CYACLKFGHRVSRCRTKSRLKCEKCG-SRHLTILCP 303
C+ C K GH +CR R C KCG S H+ CP
Sbjct: 390 CWNCGKEGHSARQCRAPRRQGCWKCGKSGHIMANCP 425
>sp|P27972|GAG_SIVV1 Gag polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM155) GN=gag PE=3 SV=1
Length = 520
Score = 38.1 bits (87), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 269 CYACLKFGHRVSRCRTKSRLKCEKCGS-RHLTILCPRDSKSDIVTRTFVNTKSSNVLLQT 327
CY C KFGH +C ++KC KCG HL C R + + ++ TK N T
Sbjct: 400 CYNCGKFGHMQRQCPEPRKIKCLKCGKPGHLAKDC-RGQVNFLGYGRWMGTKPRNFPAAT 458
Query: 328 L 328
L
Sbjct: 459 L 459
>sp|P18041|GAG_HV2G1 Gag polyprotein OS=Human immunodeficiency virus type 2 subtype A
(isolate Ghana-1) GN=gag PE=1 SV=3
Length = 522
Score = 37.7 bits (86), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 257 SQRQDIIRNKQVCYACLKFGHRVSRCRTKSRLKCEKCG-SRHLTILCP 303
+Q++ +IR C+ C K GH +CR R C KCG + H+ CP
Sbjct: 384 AQQRKVIR----CWNCGKEGHSARQCRAPRRQGCWKCGKTGHVMAKCP 427
>sp|Q8T8R1|Y3800_DROME CCHC-type zinc finger protein CG3800 OS=Drosophila melanogaster
GN=CG3800 PE=1 SV=1
Length = 165
Score = 37.7 bits (86), Expect = 0.77, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 19/83 (22%)
Query: 234 KGESCIFCSQ-GHYSGDCQKDMTLSQRQDIIRNKQVCYACLKFGHRVSRC------RTKS 286
+ E C C+ GH S DC + + CY C K GH V C R +
Sbjct: 73 EAERCYRCNGIGHISKDCTQ-----------ADNPTCYRCNKTGHWVRNCPEAVNERGPT 121
Query: 287 RLKCEKCG-SRHLTILCPRDSKS 308
+ C KC + H++ CP SK+
Sbjct: 122 NVSCYKCNRTGHISKNCPETSKT 144
>sp|P34565|YNV2_CAEEL Uncharacterized protein T16H12.2 OS=Caenorhabditis elegans
GN=T16H12.2 PE=4 SV=1
Length = 181
Score = 37.7 bits (86), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Query: 235 GESCIFCSQGHYSGDCQKDMTLSQRQDIIRNKQVCYACLKFGHRVSR--CRTKSRLKCEK 292
G C FC++ H C+ RQ + N+ C CLK GH+ C K + C
Sbjct: 59 GPLCYFCNKNHVPSLCRTYPDGISRQKSLENQGKCIKCLKIGHQNGDNFCE-KHHIVCRT 117
Query: 293 CGSRHLTILCP 303
C H+ +CP
Sbjct: 118 CQQSHVKAVCP 128
>sp|Q74120|POL_HV2KR Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype
A (isolate KR) GN=gag-pol PE=3 SV=3
Length = 1463
Score = 37.4 bits (85), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 269 CYACLKFGHRVSRCRTKSRLKCEKCG-SRHLTILCP 303
C+ C K GH +CR R C KCG S H+ CP
Sbjct: 391 CWNCGKDGHSARQCRAPRRQGCWKCGKSGHVMANCP 426
>sp|P20876|POL_HV2ST Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype
A (isolate ST) GN=gag-pol PE=3 SV=3
Length = 1463
Score = 37.4 bits (85), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 269 CYACLKFGHRVSRCRTKSRLKCEKCG-SRHLTILCP 303
C+ C K GH +CR R C KCG + H+ CP
Sbjct: 391 CWNCGKEGHSARQCRAPRRQGCWKCGKAGHIMAKCP 426
>sp|P17756|GAG_HV2D1 Gag polyprotein OS=Human immunodeficiency virus type 2 subtype A
(isolate D194) GN=gag PE=3 SV=4
Length = 521
Score = 37.4 bits (85), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 257 SQRQDIIRNKQVCYACLKFGHRVSRCRTKSRLKCEKCG-SRHLTILCP 303
+Q++ IR C+ C K GH +CR R C KCG S H+ CP
Sbjct: 383 AQQRRAIR----CWNCGKEGHSAKQCRAPRRQGCWKCGKSGHIMANCP 426
>sp|Q02843|GAG_SIVG1 Gag polyprotein OS=Simian immunodeficiency virus agm.grivet
(isolate AGM gr-1) GN=gag PE=1 SV=1
Length = 513
Score = 37.0 bits (84), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 11/102 (10%)
Query: 269 CYACLKFGHRVSRCRTKSRLKCEKCGS-RHLTILCPRDSKSDIVT---------RTFVNT 318
C+ C KFGH C+ ++KC KCG H+ C ++ +++ + R FV
Sbjct: 392 CFNCGKFGHMQRECKAPRQIKCFKCGKIGHMAKDC-KNGQANFLGYGHWGGAKPRNFVQY 450
Query: 319 KSSNVLLQTLVVKIRGKDGKQDKLARLMIDTGSQQSYVLEQT 360
+ V L+ + KL + + G + EQT
Sbjct: 451 RGDTVGLEPTAPPMETAYDPAKKLLQQYAEKGQRLREEREQT 492
>sp|P12502|POL_SIVS4 Gag-Pol polyprotein OS=Simian immunodeficiency virus (isolate
F236/smH4) GN=gag-pol PE=3 SV=2
Length = 1449
Score = 37.0 bits (84), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 269 CYACLKFGHRVSRCRTKSRLKCEKCG-SRHLTILCP 303
C+ C K GH +CR R C KCG + H+ CP
Sbjct: 394 CWNCGKEGHSAKQCRAPRRQGCWKCGKTGHVMAKCP 429
>sp|P05893|GAG_SIVMK Gag polyprotein OS=Simian immunodeficiency virus (isolate K6W)
GN=gag PE=1 SV=1
Length = 506
Score = 37.0 bits (84), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 49/119 (41%), Gaps = 13/119 (10%)
Query: 269 CYACLKFGHRVSRCRTKSRLKCEKCGSR-HLTILCPRDSKSDIVTRTFVNTKSSNVLL-- 325
C+ C K GH +CR R +C KCG H+ CP D ++ + K N +
Sbjct: 393 CWNCGKEGHSARQCRAPRRQRCWKCGKMDHVMAKCP-DRQAGFLGLGPWGKKPRNFPMAQ 451
Query: 326 --QTLVVKIRGKDGKQDKLARLMIDTGSQQSYVLEQTMNSLSYTPITKQSMR-HALFGG 381
Q L +D D L M G QQ E+ Y +T+ + ++LFGG
Sbjct: 452 VHQGLTPTAPPEDPAVDLLKNYM-QLGKQQRESREK-----PYKEVTEDLLHLNSLFGG 504
>sp|P27973|POL_SIVV1 Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM155) GN=gag-pol PE=3 SV=2
Length = 1470
Score = 37.0 bits (84), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 269 CYACLKFGHRVSRCRTKSRLKCEKCGS-RHLTILC 302
CY C KFGH +C ++KC KCG HL C
Sbjct: 400 CYNCGKFGHMQRQCPEPRKIKCLKCGKPGHLAKDC 434
>sp|P12450|GAG_HV2SB Gag polyprotein OS=Human immunodeficiency virus type 2 subtype A
(isolate SBLISY) GN=gag PE=3 SV=3
Length = 520
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 269 CYACLKFGHRVSRCRTKSRLKCEKCG-SRHLTILCP 303
C+ C K GH +CR R C KCG S H+ CP
Sbjct: 390 CWNCGKEGHSARQCRAPRRQGCWKCGKSGHIMANCP 425
>sp|Q2I0M5|RSPO4_HUMAN R-spondin-4 OS=Homo sapiens GN=RSPO4 PE=1 SV=2
Length = 234
Score = 37.0 bits (84), Expect = 1.3, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 238 CIFCSQGHYSGDCQKDMTLSQRQDIIRNKQVC-------YACLKFGHRVSRCRTKSRLKC 290
CI CS+ + CQ+ + L R++ IR C Y ++ G V+RC+ K C
Sbjct: 38 CIICSEENGCSTCQQRLFLFIRREGIRQYGKCLHDCPPGYFGIR-GQEVNRCK-KCGATC 95
Query: 291 EKCGSRHLTILCPR 304
E C S+ I C R
Sbjct: 96 ESCFSQDFCIRCKR 109
>sp|Q764T8|LUPS_GLYGL Lupeol synthase OS=Glycyrrhiza glabra GN=LUS1 PE=1 SV=1
Length = 758
Score = 36.6 bits (83), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Query: 142 KLELAKSGFGVVSSANKVESNNRRKDKHVKSPEKMNFLKAEVEGVQKLELAKSGFGVVSS 201
KL++ + G G++S N + + D + +P++ AE+E +++ E K+ F + S
Sbjct: 3 KLKIGEGGAGLISVNNFIGRQHWEFDPNAGTPQE----HAEIERLRR-EFTKNRFSIKQS 57
Query: 202 ANKVESNNRRKDKHVKSPEKVPTATGLVNS 231
A+ + RK+ H + +P A L ++
Sbjct: 58 ADLLMRMQLRKENHYGTNNNIPAAVKLSDA 87
>sp|Q8TE76|MORC4_HUMAN MORC family CW-type zinc finger protein 4 OS=Homo sapiens GN=MORC4
PE=1 SV=2
Length = 937
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 13/90 (14%)
Query: 1054 EWRHVPGEMNPADLPSRGCTMKKLVQCRWWEGPEWLKGSPEQWPHHEEIEDEDEVCREKK 1113
+WR +PG+++P+ LP+R C + P++ + S P +E+ DED +C K
Sbjct: 434 KWRKLPGKIDPSMLPARWF-------CYYNSHPKYRRCS---VPEEQELTDED-LCLSKA 482
Query: 1114 KTVVSSVTLSQ--PMDVDWHKYFSKYNKLV 1141
K +V + PM+ + H+ FS K++
Sbjct: 483 KKQEQTVEEKKKMPMENENHQVFSNPPKIL 512
>sp|P15832|GAG_HV2D2 Gag polyprotein OS=Human immunodeficiency virus type 2 subtype B
(isolate D205) GN=gag PE=3 SV=3
Length = 521
Score = 36.2 bits (82), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 258 QRQDIIRNKQVCYACLKFGHRVSRCRTKSRLKCEKCG-SRHLTILCP 303
Q++ R C+ C K GH +CR R C KCG + H+ CP
Sbjct: 379 QQKAGKRGTVTCWNCGKQGHTARQCRAPRRQGCWKCGKTGHIMSKCP 425
>sp|Q02836|POL_SIVG1 Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.grivet
(isolate AGM gr-1) GN=gag-pol PE=3 SV=2
Length = 1472
Score = 36.2 bits (82), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 269 CYACLKFGHRVSRCRTKSRLKCEKCG 294
C+ C KFGH C+ ++KC KCG
Sbjct: 392 CFNCGKFGHMQRECKAPRQIKCFKCG 417
>sp|Q74119|GAG_HV2KR Gag polyprotein OS=Human immunodeficiency virus type 2 subtype A
(isolate KR) GN=gag PE=3 SV=3
Length = 521
Score = 36.2 bits (82), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 269 CYACLKFGHRVSRCRTKSRLKCEKCG-SRHLTILCP 303
C+ C K GH +CR R C KCG S H+ CP
Sbjct: 391 CWNCGKDGHSARQCRAPRRQGCWKCGKSGHVMANCP 426
>sp|P27978|GAG_SIVVG Gag polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM3) GN=gag PE=3 SV=1
Length = 521
Score = 36.2 bits (82), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 269 CYACLKFGHRVSRCRTKSRLKCEKCGS-RHLTILCPRDSKSDIVTRTFVNTKSSNVLLQT 327
CY C KFGH +C +++C KCG HL C R + + ++ K N T
Sbjct: 404 CYNCGKFGHMQRQCPEPRKMRCLKCGKPGHLAKDC-RGQVNFLGYGRWMGAKPRNFPAAT 462
Query: 328 LVVK 331
L V+
Sbjct: 463 LGVE 466
>sp|P27980|POL_SIVVG Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM3) GN=gag-pol PE=3 SV=2
Length = 1465
Score = 36.2 bits (82), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 269 CYACLKFGHRVSRCRTKSRLKCEKCGS-RHLTILC 302
CY C KFGH +C +++C KCG HL C
Sbjct: 404 CYNCGKFGHMQRQCPEPRKMRCLKCGKPGHLAKDC 438
>sp|P05895|POL_SIVVT Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM TYO-1) GN=gag-pol PE=3 SV=2
Length = 1467
Score = 36.2 bits (82), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 269 CYACLKFGHRVSRCRTKSRLKCEKCGS-RHLTILC 302
CY C KFGH +C +++C KCG HL C
Sbjct: 404 CYNCGKFGHMQRQCPEPRKMRCLKCGKPGHLAKDC 438
>sp|P12496|GAG_SIVS4 Gag polyprotein OS=Simian immunodeficiency virus (isolate
F236/smH4) GN=gag PE=3 SV=1
Length = 507
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 269 CYACLKFGHRVSRCRTKSRLKCEKCG-SRHLTILCP 303
C+ C K GH +CR R C KCG + H+ CP
Sbjct: 394 CWNCGKEGHSAKQCRAPRRQGCWKCGKTGHVMAKCP 429
>sp|P20874|GAG_HV2ST Gag polyprotein OS=Human immunodeficiency virus type 2 subtype A
(isolate ST) GN=gag PE=3 SV=3
Length = 521
Score = 35.8 bits (81), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 269 CYACLKFGHRVSRCRTKSRLKCEKCG-SRHLTILCP 303
C+ C K GH +CR R C KCG + H+ CP
Sbjct: 391 CWNCGKEGHSARQCRAPRRQGCWKCGKAGHIMAKCP 426
>sp|P53849|GIS2_YEAST Zinc finger protein GIS2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=GIS2 PE=1 SV=1
Length = 153
Score = 35.8 bits (81), Expect = 2.8, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 11/72 (15%)
Query: 238 CIFCSQ-GHYSGDCQKDMTLSQRQDIIRNKQVCYACLKFGHRVSRCRTKSRLKCEKCGSR 296
C C++ GH DC T+ +Q CY C + GH S C + C + G
Sbjct: 25 CYNCNKPGHVQTDCTMPRTVEFKQ--------CYNCGETGHVRSECTVQRCFNCNQTG-- 74
Query: 297 HLTILCPRDSKS 308
H++ CP K+
Sbjct: 75 HISRECPEPKKT 86
>sp|P05892|GAG_SIVVT Gag polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM TYO-1) GN=gag PE=3 SV=1
Length = 519
Score = 35.0 bits (79), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 269 CYACLKFGHRVSRCRTKSRLKCEKCGS-RHLTILCPRDSKSDIVTRTFVNTKSSNVLLQT 327
CY C KFGH +C + KC KCG HL C R + + ++ K N T
Sbjct: 399 CYNCGKFGHMQRQCPEPRKTKCLKCGKLGHLAKDC-RGQVNFLGYGRWMGAKPRNFPAAT 457
Query: 328 L 328
L
Sbjct: 458 L 458
>sp|B4SP54|HUTI_STRM5 Imidazolonepropionase OS=Stenotrophomonas maltophilia (strain
R551-3) GN=hutI PE=3 SV=1
Length = 407
Score = 34.7 bits (78), Expect = 5.3, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 125 YLDSLMNFLKAEVEGVQKLELAKSGFGVVSSANKVESNNRRKDKHVKSPEKMNFLKAEVE 184
Y + N + ++G+ E+A++G G+VS+ V + + + S + L E
Sbjct: 73 YAGNRANEFEQRLQGISYAEIARAGGGIVST---VRATRAATPEQLASESRPRLLAMRAE 129
Query: 185 GVQKLELAKSGFGV 198
GV LE+ KSG+G+
Sbjct: 130 GVTTLEI-KSGYGL 142
>sp|O65639|CSP1_ARATH Cold shock protein 1 OS=Arabidopsis thaliana GN=CSP1 PE=2 SV=1
Length = 299
Score = 34.7 bits (78), Expect = 6.7, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
Query: 236 ESCIFCSQ-GHYSGDCQKDMTLSQRQDIIRNKQVCYACLKFGHRVSRCRTKSRLK--CEK 292
+ C C GH++ DC + + + CY+C GH C TK + C +
Sbjct: 198 DGCYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDCATKRQPSRGCYQ 257
Query: 293 C-GSRHLTILC 302
C GS HL C
Sbjct: 258 CGGSGHLARDC 268
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 535,106,039
Number of Sequences: 539616
Number of extensions: 22778968
Number of successful extensions: 57541
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 57449
Number of HSP's gapped (non-prelim): 130
length of query: 1447
length of database: 191,569,459
effective HSP length: 130
effective length of query: 1317
effective length of database: 121,419,379
effective search space: 159909322143
effective search space used: 159909322143
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 68 (30.8 bits)