BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>psy9877
MKGTPARELVDSYPATGNMYNQVVEALKARFGREDLLTEVYIRELLKLVLANTASHDKLP
IVILYDRLQSHLRNLESLGVSADRCAPILMPLVSSSLPQDLLQMWERCSVTQLHATQPSA
GCKEYLDSLMNFLKAEVEGVQKLELAKSGFGVVSSANKVESNNRRKDKHVKSPEKMNFLK
AEVEGVQKLELAKSGFGVVSSANKVESNNRRKDKHVKSPEKVPTATGLVNSTPKGESCIF
CSQGHYSGDCQKDMTLSQRQDIIRNKQVCYACLKFGHRVSRCRTKSRLKCEKCGSRHLTI
LCPRDSKSDIVTRTFVNTKSSNVLLQTLVVKIRGKDGKQDKLARLMIDTGSQQSYVLEQT
MNSLSYTPITKQSMRHALFGGSITDAMDHNLFKIVISNLDNTFACDFDVFGQSKICSTIP
SIPSGPWIDELKQHNIELTDLQHPSTTVDILVGADIAGKFYTGKRVELPSGLVAMETCMG
WTLSGKMPTRYGSIDSSVATLVTSLLIKDANISDLWSLDVLGIQDPMDKSKADLAEAARK
HFLDTVQVNSDNRFEVHLPWIEGHPPLASNLLLSQKRLEGTVKKLRRDQYYADYKRVLDT
WEMDKIIERVPQEELDNPGYYMPHHHVVKPGSTTPVRPVFDASAKDNGVSLNDCLEKGPN
LIETIPTSLAKFRINKIGISGDIAKAFLQISVSPQDRDCLSMRQPRIMVSRDCLRFLWQD
ENGRVITYRHCRVVFGVSSSPFLLESCLKLHLELTLTDCREGKSSWPIHLVELLKDSFYV
DNCLVSTDSQAEAEQFIQVASSIMKEKGFDLRGWELTGDKDDKPTNVLGLLWDKSSDTLA
INIDRLTSMHIEKITKKVMLSAAHRIFDPIGVICAFALIPKLLIQKTWETGLAWNDEVDE
NTKTKFVQWMAEVPDIAEIRVPRWISEPNVESRESWSLHVFSDASKLAYAAAVFLRVEHS
KTKVSLHLLAARARVAPSSKSKSTLTIPRLELLAASIATRLCQTVVKDYKLQDVRTTFWT
DATTVLAWIRRNEPWNVFVMNRITEIRNLSQEHEWRHVPGEMNPADLPSRGCTMKKLVQC
RWWEGPEWLKGSPEQWPHHEEIEDEDEVCREKKKTVVSSVTLSQPMDVDWHKYFSKYNKL
VRMVGWMKRFKTNCEFKKYNKLVRMVGWMKRFKTNCEFKKVHGHLPTPQDLTVEELCTAE
TQVLKWVQEESCKEEDPRFSSLVTFLDEDGLIRVKTKISNRQDLEDSCCPVVLPRHPVVL
KLVMFHHLNNCHAGTQILMSILRQKYWILGETGVPEYEMDASDLRAHYKLRRELKKQLRE
RFRSEYLGQLKLTAKKKREHIIKVGDVVLIGDDNVKRLDWPMGRVINLCPGADGHVRVVK
LRTSSGVLTRPIQRIYPLEFHCSSDDMTPNLHEEKTKVSDLDTVPKSDLQEVEVHSPVES
EDVVPPI

High Scoring Gene Products

Symbol, full name Information P value
DDB_G0293328
Cellular nucleic acid-binding protein 		gene from Dictyostelium discoideum 0.00091

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  psy9877
        (1447 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

DICTYBASE|DDB_G0293328 - symbol:DDB_G0293328 "Cellular nu...    99  0.00091   1


>DICTYBASE|DDB_G0293328 [details] [associations]
            symbol:DDB_G0293328 "Cellular nucleic acid-binding
            protein" species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc
            ion binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
            [GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR001878
            Pfam:PF00098 PROSITE:PS50158 SMART:SM00343 dictyBase:DDB_G0293328
            GO:GO:0046872 GO:GO:0008270 GO:GO:0003676 eggNOG:COG5082
            Gene3D:4.10.60.10 SUPFAM:SSF57756 EMBL:AAFI02000201
            RefSeq:XP_629203.1 ProteinModelPortal:Q54BY8 STRING:Q54BY8
            EnsemblProtists:DDB0191881 GeneID:8629162 KEGG:ddi:DDB_G0293328
            InParanoid:Q54BY8 OMA:CKEVGHI ProtClustDB:PTZ00368 Uniprot:Q54BY8
        Length = 131

 Score = 99 (39.9 bits), Expect = 0.00091, P = 0.00091
 Identities = 25/73 (34%), Positives = 34/73 (46%)

Query:   237 SCIFCSQ-GHYSGDC-QKDMTLSQRQDIIRNKQVCYACLKFGHRVSRCRTKSRLKCEKCG 294
             +C  C+  GH S +C Q      +++D I+    CY C  FGH    CR     KC  CG
Sbjct:    32 ACYVCNVVGHLSRECPQNPQPTFEKKDPIK----CYQCNGFGHFARDCRRGRDNKCYNCG 87

Query:   295 SR-HLTILCPRDS 306
                H++  CP  S
Sbjct:    88 GLGHISKDCPSPS 100


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.133   0.404    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0     1447      1407   0.00091  124 3  11 22  0.39    34
                                                     39  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  642 (68 KB)
  Total size of DFA:  664 KB (2288 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:03
  No. of threads or processors used:  24
  Search cpu time:  120.93u 0.11s 121.04t   Elapsed:  00:01:31
  Total cpu time:  120.93u 0.11s 121.04t   Elapsed:  00:01:34
  Start:  Thu Aug 15 12:05:25 2013   End:  Thu Aug 15 12:06:59 2013

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