RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9877
(1447 letters)
>gnl|CDD|238822 cd01644, RT_pepA17, RT_pepA17: Reverse transcriptase (RTs) in
retrotransposons. This subfamily represents the RT
domain of a multifunctional enzyme. C-terminal to the RT
domain is a domain homologous to aspartic proteinases
(corresponding to Merops family A17) encoded by
retrotransposons and retroviruses. RT catalyzes DNA
replication from an RNA template and is responsible for
the replication of retroelements.
Length = 213
Score = 190 bits (484), Expect = 7e-55
Identities = 90/236 (38%), Positives = 124/236 (52%), Gaps = 42/236 (17%)
Query: 620 YYMPHHHVVKPGS-TTPVRPVFDASAKDNGVSLNDCLEKGPNLIETIPTSLAKFRINKIG 678
+Y+PHH V+KP TT +R VFDASA+ NGVSLND L KGP+L+ ++ L +FR KI
Sbjct: 2 WYLPHHAVIKPSKTTTKLRVVFDASARYNGVSLNDMLLKGPDLLNSLFGVLLRFRQGKIA 61
Query: 679 ISGDIAKAFLQISVSPQDRDCLSMRQPRIMVSRDCLRFLWQDENG--RVITYRHCRVVFG 736
+S DI K F Q+ V P+D RD LRFLW+ + + I YR V FG
Sbjct: 62 VSADIEKMFHQVKVRPED--------------RDVLRFLWRKDGDEPKPIEYRMTVVPFG 107
Query: 737 VSSSPFLLESCLKLHLELTLTDCREGKSSWPIHLVELLKDSFYVDNCLVSTDSQAEAEQF 796
+S+PFL LK H E D +++K +FYVD+ LVSTD+ EA
Sbjct: 108 AASAPFLANRALKQHAE----DHPHEA------AAKIIKRNFYVDDILVSTDTLNEAVNV 157
Query: 797 IQVASSIMKEKGFDLRGWE--------------LTGDKDDKPTN-VLGLLWDKSSD 837
+ +++K+ GF+LR W + D+D T LGL W+ +D
Sbjct: 158 AKRLIALLKKGGFNLRKWASNSQEVLDDLPEERVLLDRDSDVTEKTLGLRWNPKTD 213
>gnl|CDD|147520 pfam05380, Peptidase_A17, Pao retrotransposon peptidase. Corresponds
to Merops family A17. These proteins are homologous to
aspartic proteinases encoded by retroposons and
retroviruses.
Length = 159
Score = 135 bits (343), Expect = 1e-36
Identities = 59/166 (35%), Positives = 98/166 (59%), Gaps = 8/166 (4%)
Query: 855 TKKVMLSAAHRIFDPIGVICAFALIPKLLIQKTWETGLAWNDEVDENTKTKFVQWMAEVP 914
TK+ +LS IFDP+G++ + K+ +Q+ W L W++E+ E +++ + ++
Sbjct: 2 TKREVLSQVASIFDPLGLLAPVTVRAKIFLQEIWRQKLGWDEEIPEELSQRWLAFRKQLS 61
Query: 915 DIAEIRVPRWISEPNVESRESWSLHVFSDASKLAYAAAVFLRVEHSKTKVSLHLLAARAR 974
+ +IRVPR++ + + LH F DAS+ AYAAAV+ RVE + + + L+AA+ R
Sbjct: 62 TLQQIRVPRYVPYSPARNIQ---LHGFCDASEKAYAAAVYWRVEEGEE-IQVSLVAAKTR 117
Query: 975 VAPSSKSKSTLTIPRLELLAASIATRLCQTVVKDYKLQDVRTTFWT 1020
VAP T++IPRLEL AA + TRL + V ++ ++ T WT
Sbjct: 118 VAPL----KTVSIPRLELCAALLLTRLARAVKPEHDVKPTDTYCWT 159
>gnl|CDD|202685 pfam03564, DUF1759, Protein of unknown function (DUF1759). This is
a family of proteins of unknown function. Most of the
members are gag-polyproteins.
Length = 146
Score = 52.8 bits (127), Expect = 7e-08
Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Query: 5 PARELVDSYPATGNMYNQVVEALKARFGREDLLTEVYIRELLKLVLANTASHDKLPIVIL 64
A LV P T Y+ EALK R+ ++ + +L+K L +T + + L
Sbjct: 41 EAATLVTHLPITAANYDVAWEALKERYDNPRVIIRSLLNKLMK--LPSTNNDSVSQLRRL 98
Query: 65 YDRLQSHLRNLESLGVSADRCAPILMPLVSSSLPQDLLQMWE 106
YD +R LE LG +AD IL L+ L +++ + W
Sbjct: 99 YDEANEIIRQLEQLGENADDT--ILAHLLLQKLDEEIRRKWI 138
>gnl|CDD|147642 pfam05585, DUF1758, Putative peptidase (DUF1758). This is a family
of nematode proteins of unknown function. However, it
seems likely that these proteins act as aspartic
peptidases.
Length = 164
Score = 46.1 bits (109), Expect = 2e-05
Identities = 37/151 (24%), Positives = 65/151 (43%), Gaps = 7/151 (4%)
Query: 343 ARLMIDTGSQQSYVLEQTMNSLSYTPITKQSMRHALFGGSITDAMDHNLFKIVISNLDNT 402
RL+ D+GS+ SY+ E+ +N L + + + G N I + T
Sbjct: 13 CRLLFDSGSELSYISERCINRLGLARTPSRILVIGISGDKAPQTRGSNRTVISSRLSNGT 72
Query: 403 FACDFDVFGQSKICSTIPSIPSGPWIDELKQHNIELTDLQHPST--TVDILVGADIAGKF 460
A V KI S++ I ++++ DL +DIL+G+D F
Sbjct: 73 LAVRAHVLK--KITSSLERHVIDDSI-LAVFNDLKPADLN-FRKIAPIDILLGSDYFWDF 128
Query: 461 YTGKRV-ELPSGLVAMETCMGWTLSGKMPTR 490
TG ++ +L GL+A+ + GW ++ K +
Sbjct: 129 ITGTKIKDLGGGLIAISSIFGWVITSKQAEK 159
>gnl|CDD|215698 pfam00078, RVT_1, Reverse transcriptase (RNA-dependent DNA
polymerase). A reverse transcriptase gene is usually
indicative of a mobile element such as a retrotransposon
or retrovirus. Reverse transcriptases occur in a variety
of mobile elements, including retrotransposons,
retroviruses, group II introns, bacterial msDNAs,
hepadnaviruses, and caulimoviruses.
Length = 194
Score = 41.6 bits (98), Expect = 0.001
Identities = 27/137 (19%), Positives = 44/137 (32%), Gaps = 14/137 (10%)
Query: 675 NKIGISGDIAKAFLQISVSPQDRDCLSMRQPRIMVSRDCLRFLWQDENGRVITYRHCRVV 734
+K + D+ KAF I P DR + P+ + L Y +
Sbjct: 52 SKWFLKLDLKKAFDSIPHDPLDRPLTAFGLPQRFIRWRTFSVLV--NGNPGGRYEWRGLP 109
Query: 735 FGVSSSPFLLESCLKLHLELTLTDCREGKSSWPIHLVELLKDSFYVDNCLVSTDSQAEAE 794
G SP L + L +L Y D+ L+ + S E +
Sbjct: 110 QGSVLSPLLFNLFMNELLRPLRKRFPG-----LTYLR-------YADDILIFSKSPEELQ 157
Query: 795 QFIQVASSIMKEKGFDL 811
+ ++ +KE G L
Sbjct: 158 EILEEVLEFLKELGLKL 174
>gnl|CDD|227414 COG5082, AIR1, Arginine methyltransferase-interacting protein,
contains RING Zn-finger [Posttranslational modification,
protein turnover, chaperones / Intracellular trafficking
and secretion].
Length = 190
Score = 41.4 bits (97), Expect = 0.001
Identities = 34/152 (22%), Positives = 52/152 (34%), Gaps = 15/152 (9%)
Query: 174 EKMNFLKAEVEGVQKLELAKSGFGVV--SSANKVESNNRRKDKHVKSPEKVPTATGLVNS 231
M+ V+ L + K + SS+N E + R + V + +
Sbjct: 1 TSMDDRPRVVDATPTLPIDKLSANSIEESSSNPNELRSLRSSGRYED-RSVEDVSAIREE 59
Query: 232 TPKGESCIFCSQ-GHYSGDCQKDMTLSQRQDIIRN-----KQVCYACLKFGHRVSRCRTK 285
P C C Q GH DC + + D R+ + CY C + GH C
Sbjct: 60 NPV---CFNCGQNGHLRRDCPHSICYNCSWDGHRSNHCPKPKKCYNCGETGHLSRDCNPS 116
Query: 286 SRLK--CEKCGS-RHLTILCPRDSKSDIVTRT 314
+ C C S RH + CP K ++
Sbjct: 117 KDQQKSCFDCNSTRHSSEDCPSIWKHYVLNNG 148
>gnl|CDD|187699 cd09275, RNase_HI_RT_DIRS1, DIRS1 family of RNase HI in long-term
repeat retroelements. Ribonuclease H (RNase H) enzymes
are divided into two major families, Type 1 and Type 2,
based on amino acid sequence similarities and biochemical
properties. RNase H is an endonuclease that cleaves the
RNA strand of an RNA/DNA hybrid in a sequence
non-specific manner in the presence of divalent cations.
RNase H is widely present in various organisms, including
bacteria, archaea and eukaryotes. RNase HI has also been
observed as adjunct domains to the reverse transcriptase
gene in retroviruses, in long-term repeat (LTR)-bearing
retrotransposons and non-LTR retrotransposons. RNase HI
in LTR retrotransposons perform degradation of the
original RNA template, generation of a polypurine tract
(the primer for plus-strand DNA synthesis), and final
removal of RNA primers from newly synthesized minus and
plus strands. The catalytic residues for RNase H
enzymatic activity, three aspartatic acids and one
glutamatic acid residue (DEDD), are unvaried across all
RNase H domains. Phylogenetic patterns of RNase HI of LTR
retroelements is classified into five major families,
Ty3/Gypsy, Ty1/Copia, Bel/Pao, DIRS1 and the vertebrate
retroviruses. The structural features of DIRS1-group
elements are different from typical LTR elements. RNase H
inhibitors have been explored as an anti-HIV drug target
because RNase H inactivation inhibits reverse
transcription.
Length = 120
Score = 39.6 bits (93), Expect = 0.002
Identities = 37/145 (25%), Positives = 52/145 (35%), Gaps = 43/145 (29%)
Query: 940 VFSDASKLAYAAAVFLRVEHSKTKVSLHLLAARARVAPSSKSKSTLTIPRLELLAASIAT 999
+F+DAS L+ AV S S + I LELLA +A
Sbjct: 2 LFTDAS-LSGWGAVL---SGSWA------------QGLWSAEERNKHINFLELLAVLLAL 45
Query: 1000 RLCQTVVKDYKLQDVRTTFWTDATTVLAWIRRNEPWNVFVMN--RITEIRNL-SQEHEW- 1055
+ + + K+ +D TT +A+I R R E+ L Q W
Sbjct: 46 QHWGARLSNRKV-----LVRSDNTTAVAYINR--------QGGTRSPELLALARQLVLWC 92
Query: 1056 ---------RHVPGEMN-PADLPSR 1070
RH+PG +N AD SR
Sbjct: 93 EERNIWLRARHIPGVLNVAADRLSR 117
>gnl|CDD|173561 PTZ00368, PTZ00368, universal minicircle sequence binding protein
(UMSBP); Provisional.
Length = 148
Score = 39.8 bits (93), Expect = 0.002
Identities = 20/76 (26%), Positives = 29/76 (38%), Gaps = 14/76 (18%)
Query: 235 GESCIFCSQ-GHYSGDCQKDMTLSQRQDIIRNKQVCYACLKFGHRVSRCRTK-----SRL 288
SC C + GH S +C + + CY C + GH C + +R
Sbjct: 52 ERSCYNCGKTGHLSREC------PEAPPGSGPRS-CYNCGQTGHISRECPNRAKGGAARR 104
Query: 289 KCEKCG-SRHLTILCP 303
C CG H++ CP
Sbjct: 105 ACYNCGGEGHISRDCP 120
>gnl|CDD|187690 cd06222, RNase_H, RNase H is an endonuclease that cleaves the RNA
strand of an RNA/DNA hybrid in a sequence non-specific
manner. Ribonuclease H (RNase H) enzymes are divided
into two major families, Type 1 and Type 2, based on
amino acid sequence similarities and biochemical
properties. RNase H is an endonuclease that cleaves the
RNA strand of an RNA/DNA hybrid in a sequence
non-specific manner in the presence of divalent cations.
RNase H is widely present in various organisms, including
bacteria, archaea and eukaryotes. Most prokaryotic and
eukaryotic genomes contain multiple RNase H genes.
Despite the lack of amino acid sequence homology, Type 1
and type 2 RNase H share a main-chain fold and steric
configurations of the four acidic active-site residues
and have the same catalytic mechanism and functions in
cells. RNase H is involved in DNA replication, repair and
transcription. One of the important functions of RNase H
is to remove Okazaki fragments during DNA replication.
RNase H inhibitors have been explored as an anti-HIV drug
target because RNase H inactivation inhibits reverse
transcription.
Length = 123
Score = 38.1 bits (89), Expect = 0.006
Identities = 23/93 (24%), Positives = 30/93 (32%), Gaps = 10/93 (10%)
Query: 978 SSKSKSTLTIPRLELLAASIATRLCQTVVKDYKLQDVRTTFWTDATTVLAWIRRNEPWNV 1037
S S T ELLA A L L + TD+ V+ I
Sbjct: 30 GSLSIPAATNNEAELLALLEALELAL------DLGLKKLIIETDSKYVVDLINSWSKGWK 83
Query: 1038 FVMNRITEIRNLSQEH---EWRHVPGEMNP-AD 1066
+ +I L + + HVP E N AD
Sbjct: 84 KNNLLLWDILLLLSKFIDIRFEHVPREGNEVAD 116
>gnl|CDD|239684 cd03714, RT_DIRS1, RT_DIRS1: Reverse transcriptases (RTs) occurring
in the DIRS1 group of retransposons. Members of the
subfamily include the Dictyostelium DIRS-1, Volvox
carteri kangaroo, and Panagrellus redivivus PAT
elements. These elements differ from LTR and
conventional non-LTR retrotransposons. They contain
split direct repeat (SDR) termini, and have been
proposed to integrate via double-stranded closed-circle
DNA intermediates assisted by an encoded recombinase
which is similar to gamma-site-specific integrase.
Length = 119
Score = 34.6 bits (80), Expect = 0.090
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 19/68 (27%)
Query: 682 DIAKAFLQISVSPQDRDCLSMRQPRIMVSRDCLRFLWQDENGRVITYRHCRVVFGVSSSP 741
D+ A+ I + P+ SRD L F WQ E TY+ + FG+S +P
Sbjct: 2 DLKDAYFHIPILPR--------------SRDLLGFAWQGE-----TYQFKALPFGLSLAP 42
Query: 742 FLLESCLK 749
+ ++
Sbjct: 43 RVFTKVVE 50
>gnl|CDD|227473 COG5144, TFB2, RNA polymerase II transcription
initiation/nucleotide excision repair factor TFIIH,
subunit TFB2 [Transcription / DNA replication,
recombination, and repair].
Length = 447
Score = 35.3 bits (81), Expect = 0.25
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Query: 659 PNLIETIPTSLAKFRINKIGISGDIAKAFLQISVSPQDRDCLSMRQPRIMVSRDCLRFLW 718
PNL++ I T + R GI+ +L+ PQ R L + P I D + LW
Sbjct: 325 PNLVKGIITRESIRRALDNGITAKQIIHYLETHAHPQMRKKLELLPPTI---VDQIV-LW 380
Query: 719 QDENGRVITY 728
+ E R+
Sbjct: 381 ELERNRIFMV 390
>gnl|CDD|144068 pfam00336, DNA_pol_viral_C, DNA polymerase (viral) C-terminal domain.
Length = 245
Score = 33.4 bits (76), Expect = 0.70
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 1057 HVPGEMNPADLPSRGC 1072
+VP +NPAD PSRG
Sbjct: 179 YVPSALNPADDPSRGL 194
>gnl|CDD|133136 cd00303, retropepsin_like, Retropepsins; pepsin-like aspartate
proteases. The family includes pepsin-like aspartate
proteases from retroviruses, retrotransposons and
retroelements, as well as eukaryotic
dna-damage-inducible proteins (DDIs), and bacterial
aspartate peptidases. While fungal and mammalian pepsins
are bilobal proteins with structurally related N and
C-terminals, retropepsins are half as long as their
fungal and mammalian counterparts. The monomers are
structurally related to one lobe of the pepsin molecule
and retropepsins function as homodimers. The active site
aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it
does in pepsin. Retroviral aspartyl protease is
synthesized as part of the POL polyprotein that contains
an aspartyl protease, a reverse transcriptase, RNase H,
and an integrase. The POL polyprotein undergoes specific
enzymatic cleavage to yield the mature proteins. In
aspartate peptidases, Asp residues are ligands of an
activated water molecule in all examples where catalytic
residues have been identified. This group of aspartate
peptidases is classified by MEROPS as the peptidase
family A2 (retropepsin family, clan AA), subfamily A2A.
Length = 92
Score = 31.2 bits (71), Expect = 0.91
Identities = 14/72 (19%), Positives = 24/72 (33%), Gaps = 2/72 (2%)
Query: 339 QDKLARLMIDTGSQQSYVLEQTMNSLSYTPITKQSMRHA-LFGGSITDAMDHNLFKIVIS 397
R ++D+G+ +++ E L P + GS + + I
Sbjct: 6 NGVPVRALVDSGASVNFISESLAKKLGLPPRLLPTPLKVKGANGSSVKT-LGVILPVTIG 64
Query: 398 NLDNTFACDFDV 409
TF DF V
Sbjct: 65 IGGKTFTVDFYV 76
>gnl|CDD|216630 pfam01654, Bac_Ubq_Cox, Bacterial Cytochrome Ubiquinol Oxidase.
This family are the alternative oxidases found in many
bacteria which oxidise ubiquinol and reduce oxygen as
part of the electron transport chain. This family is the
subunit I of the oxidase E. coli has two copies of the
oxidase, bo and bd', both of which are represented here
In some nitrogen fixing bacteria, e.g. Klebsiella
pneumoniae this oxidase is responsible for removing
oxygen in microaerobic conditions, making the oxidase
required for nitrogen fixation. This subunit binds a
single b-haem, through ligands at His186 and Met393
(using SW:P11026 numbering). In addition His19 is a
ligand for the haem b found in subunit II.
Length = 432
Score = 33.2 bits (77), Expect = 1.0
Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 8/48 (16%)
Query: 468 LPSGLVAME-----TCMG---WTLSGKMPTRYGSIDSSVATLVTSLLI 507
+P +A E T +G WT+ G + T S ++ SL+
Sbjct: 359 IPLPFIANEAGWIVTEVGRQPWTVYGLLRTADAVSPVSAGQVLFSLIG 406
>gnl|CDD|115907 pfam07282, OrfB_Zn_ribbon, Putative transposase DNA-binding domain.
This putative domain is found at the C-terminus of a
large number of transposase proteins. This domain
contains four conserved cysteines suggestive of a zinc
binding domain. Given the need for transposases to bind
DNA as well as the large number of DNA-binding zinc
fingers we hypothesise this domain is DNA-binding.
Length = 69
Score = 29.5 bits (67), Expect = 1.6
Identities = 8/31 (25%), Positives = 11/31 (35%), Gaps = 3/31 (9%)
Query: 267 QVCYACLKFGHRVSRCRTKSRLKCEKCGSRH 297
+ C C GH+ + KC CG
Sbjct: 29 KTCSVC---GHKNKESLSGRTFKCPNCGFVA 56
>gnl|CDD|172665 PRK14177, PRK14177, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 284
Score = 31.9 bits (72), Expect = 2.2
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 6/53 (11%)
Query: 1251 VVLPRHPVVLK--LVMFHHLNN----CHAGTQILMSILRQKYWILGETGVPEY 1297
VV+ R P++ K ++ +N CH+ TQ L SI+RQ I+G G PE+
Sbjct: 163 VVVGRSPILGKPMAMLLTEMNATVTLCHSKTQNLPSIVRQADIIVGAVGKPEF 215
>gnl|CDD|238825 cd01647, RT_LTR, RT_LTR: Reverse transcriptases (RTs) from
retrotransposons and retroviruses which have long
terminal repeats (LTRs) in their DNA copies but not in
their RNA template. RT catalyzes DNA replication from an
RNA template, and is responsible for the replication of
retroelements. An RT gene is usually indicative of a
mobile element such as a retrotransposon or retrovirus.
RTs are present in a variety of mobile elements,
including retrotransposons, retroviruses, group II
introns, bacterial msDNAs, hepadnaviruses, and
Caulimoviruses.
Length = 177
Score = 29.9 bits (68), Expect = 6.3
Identities = 23/115 (20%), Positives = 37/115 (32%), Gaps = 27/115 (23%)
Query: 627 VVKPGSTTPVRPVFDASAKDNGVSLNDCLEKGPNLIETIPTSLAKFRINKIGISGDIAKA 686
V K R D LN K + TI L + K+ D+
Sbjct: 17 VKKKDGKL--RLCVDYRK------LNKVTIKDRYPLPTIDELLEELAGAKVFSKLDLRSG 68
Query: 687 FLQISVSPQDRDCLSMRQPRIMVSRDCLRFLWQDENGRVITYRHCRVVFGVSSSP 741
+ QI ++ + R + R P G Y + R+ FG+ ++P
Sbjct: 69 YHQIPLAEESRPKTAFRTPF----------------G---LYEYTRMPFGLKNAP 104
>gnl|CDD|216086 pfam00728, Glyco_hydro_20, Glycosyl hydrolase family 20, catalytic
domain. This domain has a TIM barrel fold.
Length = 335
Score = 30.0 bits (68), Expect = 8.9
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 795 QFIQVASSIMKEKGFDLRGWE--LTGDKDDKPTNVLGLLWD 833
FI+ I+K++G GWE LTG P + W
Sbjct: 189 YFIKRVVKIVKKRGKKPIGWEEILTGGGTLLPPDTTVQSWR 229
>gnl|CDD|238575 cd01170, THZ_kinase, 4-methyl-5-beta-hydroxyethylthiazole (Thz)
kinase catalyzes the phosphorylation of the
hydroxylgroup of Thz. A reaction that allows cells to
recycle Thz into the thiamine biosynthesis pathway, as
an alternative to its synthesis from cysteine, tyrosine
and 1-deoxy-D-xylulose-5-phosphate.
Length = 242
Score = 29.8 bits (68), Expect = 9.0
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 834 KSSDTLAINIDRLTSMHIEKITKKVMLSAAHR---IFDPIGV 872
K + L INI LTS IE + K + + DP+GV
Sbjct: 48 KIAGALVINIGTLTSEQIEAMLKAGKAANQLGKPVVLDPVGV 89
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.133 0.403
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 72,414,868
Number of extensions: 7091810
Number of successful extensions: 6145
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6128
Number of HSP's successfully gapped: 29
Length of query: 1447
Length of database: 10,937,602
Length adjustment: 109
Effective length of query: 1338
Effective length of database: 6,103,016
Effective search space: 8165835408
Effective search space used: 8165835408
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (28.7 bits)