BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9878
(338 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q53GS9|SNUT2_HUMAN U4/U6.U5 tri-snRNP-associated protein 2 OS=Homo sapiens GN=USP39
PE=1 SV=2
Length = 565
Score = 382 bits (981), Expect = e-105, Method: Compositional matrix adjust.
Identities = 198/327 (60%), Positives = 223/327 (68%), Gaps = 51/327 (15%)
Query: 8 NRLCPYLDTINRQLLDFDFEKLCSVSLSRINVYACLVCGKYFQGRGTNTFAYTHSVAESH 67
+R CPYLDTINR +LDFDFEKLCS+SLS IN YACLVCGKYFQGRG + AY HSV SH
Sbjct: 102 SRHCPYLDTINRSVLDFDFEKLCSISLSHINAYACLVCGKYFQGRGLKSHAYIHSVQFSH 161
Query: 68 HVFLNLHTLKFYCLPDNYEIVGTVAGPVVNRLCPYLDTINRQLLDFDFEKLCSVSLSRIN 127
HVFLNLHTLKFYCLPDNYEI+
Sbjct: 162 HVFLNLHTLKFYCLPDNYEII--------------------------------------- 182
Query: 128 VYACLVCGKYFQDSSLDDIKYVLNPTFTTDQIKQLDLSDKMSRAIDGTLYLPGIVGLNNI 187
DSSL+DI YVL PTFT QI LD K+SRA DGT YLPGIVGLNNI
Sbjct: 183 ------------DSSLEDITYVLKPTFTKQQIANLDKQAKLSRAYDGTTYLPGIVGLNNI 230
Query: 188 KANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNF 247
KANDY N +LQAL +V PLR+YFL E NY +KRPPGD FLLVQRFGELMRKLWNPRNF
Sbjct: 231 KANDYANAVLQALSNVPPLRNYFLEEDNYKNIKRPPGDIMFLLVQRFGELMRKLWNPRNF 290
Query: 248 KSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFL 307
K+HVSPHEMLQAVVL S+K FQ T+Q D +DFLSWFLN LH AL GTKKK +IV F
Sbjct: 291 KAHVSPHEMLQAVVLCSKKTFQITKQGDGVDFLSWFLNALHSALGGTKKKKKTIVTDVFQ 350
Query: 308 GSMKVKTRKIPPVELEEKVRQRLLLTD 334
GSM++ T+K+P +L + +++LL D
Sbjct: 351 GSMRIFTKKLPHPDLPAEEKEQLLHND 377
>sp|Q3TIX9|SNUT2_MOUSE U4/U6.U5 tri-snRNP-associated protein 2 OS=Mus musculus GN=Usp39
PE=2 SV=2
Length = 564
Score = 382 bits (980), Expect = e-105, Method: Compositional matrix adjust.
Identities = 198/327 (60%), Positives = 223/327 (68%), Gaps = 51/327 (15%)
Query: 8 NRLCPYLDTINRQLLDFDFEKLCSVSLSRINVYACLVCGKYFQGRGTNTFAYTHSVAESH 67
+R CPYLDTINR +LDFDFEKLCS+SLS IN YACLVCGKYFQGRG + AY HSV SH
Sbjct: 101 SRHCPYLDTINRSVLDFDFEKLCSISLSHINAYACLVCGKYFQGRGLKSHAYIHSVQFSH 160
Query: 68 HVFLNLHTLKFYCLPDNYEIVGTVAGPVVNRLCPYLDTINRQLLDFDFEKLCSVSLSRIN 127
HVFLNLHTLKFYCLPDNYEI+
Sbjct: 161 HVFLNLHTLKFYCLPDNYEII--------------------------------------- 181
Query: 128 VYACLVCGKYFQDSSLDDIKYVLNPTFTTDQIKQLDLSDKMSRAIDGTLYLPGIVGLNNI 187
DSSL+DI YVL PTFT QI LD K+SRA DGT YLPGIVGLNNI
Sbjct: 182 ------------DSSLEDITYVLKPTFTKQQIANLDKQAKLSRAYDGTTYLPGIVGLNNI 229
Query: 188 KANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNF 247
KANDY N +LQAL +V PLR+YFL E NY +KRPPGD FLLVQRFGELMRKLWNPRNF
Sbjct: 230 KANDYANAVLQALSNVPPLRNYFLEEDNYKNIKRPPGDIMFLLVQRFGELMRKLWNPRNF 289
Query: 248 KSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFL 307
K+HVSPHEMLQAVVL S+K FQ T+Q D +DFLSWFLN LH AL GTKKK +IV F
Sbjct: 290 KAHVSPHEMLQAVVLCSKKTFQITKQGDGVDFLSWFLNALHSALGGTKKKKKTIVNDVFQ 349
Query: 308 GSMKVKTRKIPPVELEEKVRQRLLLTD 334
GSM++ T+K+P +L + +++LL D
Sbjct: 350 GSMRIFTKKLPHPDLPAEEKEQLLHND 376
>sp|Q5R761|SNUT2_PONAB U4/U6.U5 tri-snRNP-associated protein 2 OS=Pongo abelii GN=USP39
PE=2 SV=1
Length = 565
Score = 379 bits (972), Expect = e-104, Method: Compositional matrix adjust.
Identities = 196/327 (59%), Positives = 222/327 (67%), Gaps = 51/327 (15%)
Query: 8 NRLCPYLDTINRQLLDFDFEKLCSVSLSRINVYACLVCGKYFQGRGTNTFAYTHSVAESH 67
+R CPYLDTINR +LDFDFEKLCS+S S +N YACLVCGKYFQGRG + AY HSV SH
Sbjct: 102 SRHCPYLDTINRSVLDFDFEKLCSISPSHVNAYACLVCGKYFQGRGLKSHAYIHSVQFSH 161
Query: 68 HVFLNLHTLKFYCLPDNYEIVGTVAGPVVNRLCPYLDTINRQLLDFDFEKLCSVSLSRIN 127
HVFLNLHTLKFYCLPDNYEI+
Sbjct: 162 HVFLNLHTLKFYCLPDNYEII--------------------------------------- 182
Query: 128 VYACLVCGKYFQDSSLDDIKYVLNPTFTTDQIKQLDLSDKMSRAIDGTLYLPGIVGLNNI 187
DSSL+DI YVL PTFT QI LD K+SRA DGT YLPGIVGLNNI
Sbjct: 183 ------------DSSLEDITYVLKPTFTKQQIANLDKQAKLSRAYDGTTYLPGIVGLNNI 230
Query: 188 KANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNF 247
KANDY N +LQAL +V PLR+YFL E NY +KRPPGD FLLVQRFGELMRKLWNPRNF
Sbjct: 231 KANDYANAVLQALSNVPPLRNYFLEEDNYKNIKRPPGDIMFLLVQRFGELMRKLWNPRNF 290
Query: 248 KSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFL 307
K+HVSPHEMLQAVVL S+K FQ T+Q D +DFLSWFLN LH AL GTKKK +IV F
Sbjct: 291 KAHVSPHEMLQAVVLCSKKTFQITKQGDGVDFLSWFLNALHSALGGTKKKKKTIVTDVFQ 350
Query: 308 GSMKVKTRKIPPVELEEKVRQRLLLTD 334
GSM++ T+K+P +L + +++LL D
Sbjct: 351 GSMRIFTKKLPHPDLPAEEKEQLLHND 377
>sp|Q9USR2|UBP10_SCHPO Probable mRNA-splicing protein ubp10 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ubp10 PE=3 SV=1
Length = 502
Score = 213 bits (542), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 115/257 (44%), Positives = 157/257 (61%), Gaps = 50/257 (19%)
Query: 102 YLDTINRQLLDFDFEKLCSVSLSRINVYACLVCGKYFQ---------------------- 139
YLDTINR+LLDFDFEK+CSVSL+ ++VYACLVCG+YFQ
Sbjct: 60 YLDTINRKLLDFDFEKVCSVSLTNLSVYACLVCGRYFQGRGPSSHAYFHALTENHHVFVN 119
Query: 140 ----------------DSSLDDIKYVLNPTFTTDQIKQLDLSDKMSRAIDGTLYLPGIVG 183
S+L DI YV+ PTFT ++++LD + ++S + Y+PG VG
Sbjct: 120 CSTLKFYVLPESYQVESSALQDIAYVMRPTFTKLEVQRLDHTPQLSYDLMLKPYVPGFVG 179
Query: 184 LNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWN 243
+NNIK NDY NV++ L HV P R+YFL + N+ D+ LVQR L+RKLWN
Sbjct: 180 MNNIKNNDYFNVVIHMLAHVKPFRNYFLLK-NF--------DNCPQLVQRLAILIRKLWN 230
Query: 244 PRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKK---KDSS 300
+ FKSHVSP E++Q V + S K++ EQ DP++FLSWFLNTLH L G K K +S
Sbjct: 231 HKAFKSHVSPQELIQEVTVLSHKKYSINEQKDPVEFLSWFLNTLHNCLGGKKSTIAKPTS 290
Query: 301 IVYKTFLGSMKVKTRKI 317
IV+ +F G ++++++KI
Sbjct: 291 IVHYSFQGFVRIESQKI 307
Score = 124 bits (312), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 57/110 (51%), Positives = 81/110 (73%), Gaps = 1/110 (0%)
Query: 3 TGPVVNRLCPYLDTINRQLLDFDFEKLCSVSLSRINVYACLVCGKYFQGRGTNTFAYTHS 62
T P++++ YLDTINR+LLDFDFEK+CSVSL+ ++VYACLVCG+YFQGRG ++ AY H+
Sbjct: 51 TTPIISQNL-YLDTINRKLLDFDFEKVCSVSLTNLSVYACLVCGRYFQGRGPSSHAYFHA 109
Query: 63 VAESHHVFLNLHTLKFYCLPDNYEIVGTVAGPVVNRLCPYLDTINRQLLD 112
+ E+HHVF+N TLKFY LP++Y++ + + + P + Q LD
Sbjct: 110 LTENHHVFVNCSTLKFYVLPESYQVESSALQDIAYVMRPTFTKLEVQRLD 159
>sp|P43589|SAD1_YEAST Pre-mRNA-splicing factor SAD1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SAD1 PE=1 SV=1
Length = 448
Score = 127 bits (320), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 98/322 (30%), Positives = 151/322 (46%), Gaps = 71/322 (22%)
Query: 13 YLDTINRQLLDFDFEKLCSVSLSRINVYACLVCGKYFQGRGTNTFAYTHSVAESHHVFLN 72
YL+T+ R+ LDFD EK+C ++LS +NVY CLVCG Y+QGR + A+ HS+ E+HHVFLN
Sbjct: 31 YLETVVREKLDFDSEKICCITLSPLNVYCCLVCGHYYQGRHEKSPAFIHSIDENHHVFLN 90
Query: 73 LHTLKFYCLPDNYEIVGTVAGPVVNRLCPYLDTINRQLLDFDFEKLCSVSLSRINVYACL 132
L +LKFY LP N +I+ G V QL
Sbjct: 91 LTSLKFYMLPQNVQILHD--GEV-------------QL---------------------- 113
Query: 133 VCGKYFQDSSLDDIKYVLNPTFTTDQIKQLDLSDKMSRAID--GTLYLPGIVGLNNIKAN 190
L+ IK+ PT+ DL D + D YL G +G N
Sbjct: 114 ----------LNSIKFAAYPTYCPK-----DLEDFPRQCFDLSNRTYLNGFIGFTNAATY 158
Query: 191 DYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSH 250
DY + +L + H+ P+RD+FL +N+ D+ ++R ++K+W+P+ FK H
Sbjct: 159 DYAHSVLLLISHMVPVRDHFL--LNHF-------DNQGEFIKRLSICVKKIWSPKLFKHH 209
Query: 251 VSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFLGSM 310
+S + + + + R+ DP FL W N + + N K SI+ + G +
Sbjct: 210 LSVDDFVSYLKV--REGLNLN-PIDPRLFLLWLFNKICSSSNDLK----SILNHSCKGKV 262
Query: 311 KVKTRKIPPVELEEKVRQRLLL 332
K+ + P E E V ++++
Sbjct: 263 KIAKVENKP-EASESVTGKVIV 283
>sp|A6QR55|UBP4_BOVIN Ubiquitin carboxyl-terminal hydrolase 4 OS=Bos taurus GN=USP4 PE=2
SV=1
Length = 963
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 64/120 (53%), Gaps = 4/120 (3%)
Query: 179 PGIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRP-PGDSSFLLVQRFGEL 237
PG+ GL N+ + N LQ L + PL DYFL++ A + R P + + + EL
Sbjct: 299 PGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAEL 358
Query: 238 MRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKK 297
++++W+ R+ +HV+P M + V QF +Q D + L++ L+ LH LN KKK
Sbjct: 359 IKQMWSGRD--AHVAPR-MFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKK 415
>sp|Q5RCD3|UBP4_PONAB Ubiquitin carboxyl-terminal hydrolase 4 OS=Pongo abelii GN=USP4
PE=2 SV=1
Length = 963
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 64/120 (53%), Gaps = 4/120 (3%)
Query: 179 PGIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRP-PGDSSFLLVQRFGEL 237
PG+ GL N+ + N LQ L + PL DYFL++ A + R P + + + EL
Sbjct: 299 PGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAEL 358
Query: 238 MRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKK 297
++++W+ R+ +HV+P M + V QF +Q D + L++ L+ LH LN KKK
Sbjct: 359 IKQMWSGRD--AHVAPR-MFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKK 415
>sp|Q13107|UBP4_HUMAN Ubiquitin carboxyl-terminal hydrolase 4 OS=Homo sapiens GN=USP4
PE=1 SV=3
Length = 963
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 64/120 (53%), Gaps = 4/120 (3%)
Query: 179 PGIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRP-PGDSSFLLVQRFGEL 237
PG+ GL N+ + N LQ L + PL DYFL++ A + R P + + + EL
Sbjct: 299 PGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAEL 358
Query: 238 MRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKK 297
++++W+ R+ +HV+P M + V QF +Q D + L++ L+ LH LN KKK
Sbjct: 359 IKQMWSGRD--AHVAPR-MFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKK 415
>sp|P35123|UBP4_MOUSE Ubiquitin carboxyl-terminal hydrolase 4 OS=Mus musculus GN=Usp4
PE=1 SV=3
Length = 962
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 64/120 (53%), Gaps = 4/120 (3%)
Query: 179 PGIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRP-PGDSSFLLVQRFGEL 237
PG+ GL N+ + N LQ L + PL +YFL++ A + R P + + + EL
Sbjct: 299 PGLCGLGNLGNTCFMNSALQCLSNTAPLTEYFLKDEYEAEINRDNPLGMKGEIAEAYAEL 358
Query: 238 MRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKK 297
++++W+ R+ +HV+P M + V QF +Q D + L++ L+ LH LN KKK
Sbjct: 359 IKQMWSGRD--THVAPR-MFKTQVGRFAPQFSGYQQQDSQELLAFILDGLHEDLNRVKKK 415
>sp|B2GUZ1|UBP4_RAT Ubiquitin carboxyl-terminal hydrolase 4 OS=Rattus norvegicus
GN=Usp4 PE=1 SV=1
Length = 961
Score = 65.9 bits (159), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 64/120 (53%), Gaps = 4/120 (3%)
Query: 179 PGIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRP-PGDSSFLLVQRFGEL 237
PG+ GL N+ + N LQ L + PL +YFL++ A + R P + + + EL
Sbjct: 299 PGLCGLGNLGNTCFMNSALQCLSNTGPLTEYFLKDEYEAEINRDNPLGMKGEIAEAYAEL 358
Query: 238 MRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKK 297
++++W+ R+ +HV+P M + V QF +Q D + L++ L+ LH LN KKK
Sbjct: 359 IKQMWSGRD--THVAPR-MFKTQVGRFAPQFSGYQQQDSQELLAFILDGLHEDLNRVKKK 415
>sp|A0JM59|UBP20_XENTR Ubiquitin carboxyl-terminal hydrolase 20 OS=Xenopus tropicalis
GN=usp20 PE=2 SV=1
Length = 884
Score = 61.6 bits (148), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 70/289 (24%), Positives = 114/289 (39%), Gaps = 53/289 (18%)
Query: 10 LCPYLDTIN---RQLLDFDFEKLC-SVSLSRINVYACLVCGKYFQGRGTNTFAYT--HSV 63
CP+LD+I ++ L + C S + N++ACL G G G + ++ H+
Sbjct: 7 FCPHLDSIGEVTKEDLILKSKGTCESCGVGGPNLWACLQDGCQSVGCGESYVDHSTLHAQ 66
Query: 64 AESHHVFLNLHTLKFYCLPDNYEIVGTVAGPVVNRLCPYLDTINRQLLDFDFEKLCSVSL 123
A+ H++ +NL T + +C E+ GP P T + +L DF S
Sbjct: 67 AKKHNLTVNLTTFRVWCYACEKEVFLDPRGP------PASQTTSPRLSHRDF----PTSA 116
Query: 124 SRINVYACLVCGKYFQDSSLDDIKYVLNPTFTTDQIKQLDLSDKMSRAIDGTLYLPGIVG 183
+ V +S DDIK P G+ G
Sbjct: 117 HPLKSVPIAVGDDGESESDEDDIK----PR--------------------------GLTG 146
Query: 184 LNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWN 243
+ NI + Y N LQAL + PL +FL R + P L + + +L+ +LW+
Sbjct: 147 MKNIGNSCYMNAALQALSNCPPLTQFFLECGGLVRTDKKPA-----LCKSYQKLISELWH 201
Query: 244 PRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALN 292
+ S+V P + + L + F+ Q D +FL ++ LH L
Sbjct: 202 KKR-PSYVVPSSLYHGIKLIN-PLFRGYSQQDTQEFLRCLMDQLHEELK 248
>sp|B1WBD7|UBP20_XENLA Ubiquitin carboxyl-terminal hydrolase 20 OS=Xenopus laevis GN=usp20
PE=2 SV=1
Length = 840
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 88/204 (43%), Gaps = 18/204 (8%)
Query: 99 LCPYLDTIN---RQLLDFDFEKLC-SVSLSRINVYACLV-------CGKYFQDSSLDDIK 147
CP+LD+I ++ L + C S + N++ACL CG+ + D S +
Sbjct: 7 FCPHLDSIGEVTKEDLILKSKGTCESCGVGGPNLWACLQDGCQSVGCGESYADHSTLHAQ 66
Query: 148 YVLNPTFTTDQIKQLDLSDKMSRAIDGTLYLPGIVGLNNIKANDYCNVILQALCHVTPLR 207
+P + D S + + + G+ G+ NI + Y N LQAL + PL
Sbjct: 67 DFPSPAHPLKSVPIAVGDDGESESDEDDIKPRGLTGMKNIGNSCYMNAALQALSNCPPLT 126
Query: 208 DYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQAVVLWSRKQ 267
+FL R + P L + + +L+ +LW+ + S+V P + + L +
Sbjct: 127 QFFLECGGLVRTDKKPA-----LCKSYQKLVSELWHKKR-PSYVVPSSLYHGIKLIN-PL 179
Query: 268 FQFTEQSDPIDFLSWFLNTLHRAL 291
F+ Q D +FL ++ LH L
Sbjct: 180 FRGYSQQDTQEFLRCLMDQLHEEL 203
>sp|Q8R5K2|UBP33_MOUSE Ubiquitin carboxyl-terminal hydrolase 33 OS=Mus musculus GN=Usp33
PE=1 SV=2
Length = 909
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 69/288 (23%), Positives = 116/288 (40%), Gaps = 46/288 (15%)
Query: 11 CPYLDTINR----QLLDFDFEKLCSVSLSRINVYACLVCGKYFQGRGTNTFAYT--HSVA 64
CP+LD++ L+ + N++ACL + G G + ++ HS
Sbjct: 8 CPHLDSVGEITKEDLIQKSLGACQDCKVRGPNLWACLENRCSYVGCGESQVDHSTIHSQE 67
Query: 65 ESHHVFLNLHTLKFYCLPDNYEIVGTVAGPVVNRLCPYLDTINRQLLDFDFEKLCSVSLS 124
H++ +NL TL+ +C + E+ +LD R+L SL
Sbjct: 68 TKHYLTVNLTTLRVWCYACSKEV--------------FLD---RKLG-------TPPSLP 103
Query: 125 RINVYACLVCGKYFQDSSLDDIKYVLNPTFTTDQIK-QLDLSDKMSRAIDGTLYLPGIVG 183
+ + Q++S+ D K NP T + DL ++ + L G+ G
Sbjct: 104 HVRQ------PQQTQENSVQDFKIPSNPALKTPMVAVSEDLDIEVEE--EDELKARGLTG 155
Query: 184 LNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWN 243
L NI Y N LQAL + PL +FL AR + P + + + +LM +LW+
Sbjct: 156 LKNIGNTCYMNAALQALSNCPPLTQFFLDCGGLARTDKKPA-----ICKSYLKLMTELWH 210
Query: 244 PRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRAL 291
++ V P + Q + F+ Q D +FL ++ LH L
Sbjct: 211 -KSRPGSVVPANLFQGIKT-VNPTFRGYSQQDAQEFLRCLMDLLHEEL 256
>sp|Q8TEY7|UBP33_HUMAN Ubiquitin carboxyl-terminal hydrolase 33 OS=Homo sapiens GN=USP33
PE=1 SV=2
Length = 942
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 70/287 (24%), Positives = 114/287 (39%), Gaps = 44/287 (15%)
Query: 11 CPYLDTINR----QLLDFDFEKLCSVSLSRINVYACLVCGKYFQGRGTNTFAYT--HSVA 64
CP+LD++ L+ + N++ACL + G G + ++ HS
Sbjct: 39 CPHLDSVGEITKEDLIQKSLGTCQDCKVQGPNLWACLENRCSYVGCGESQVDHSTIHSQE 98
Query: 65 ESHHVFLNLHTLKFYCLPDNYEIVGTVAGPVVNRLCPYLDTINRQLLDFDFEKLCSVSLS 124
H++ +NL TL+ +C + E+ +LD R+L SL
Sbjct: 99 TKHYLTVNLTTLRVWCYACSKEV--------------FLD---RKLG-------TQPSLP 134
Query: 125 RINVYACLVCGKYFQDSSLDDIKYVLNPTFTTDQIKQLDLSDKMSRAIDGTLYLPGIVGL 184
+ Q++S+ D K N T T + D D + D L G+ GL
Sbjct: 135 HVRQ------PHQIQENSVQDFKIPSNTTLKTPLVAVFDDLDIEADEED-ELRARGLTGL 187
Query: 185 NNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNP 244
NI Y N LQAL + PL +FL AR + P + + + +LM +LW+
Sbjct: 188 KNIGNTCYMNAALQALSNCPPLTQFFLDCGGLARTDKKPA-----ICKSYLKLMTELWH- 241
Query: 245 RNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRAL 291
++ V P + Q + F+ Q D +FL ++ LH L
Sbjct: 242 KSRPGSVVPTTLFQGIKT-VNPTFRGYSQQDAQEFLRCLMDLLHEEL 287
>sp|Q9MAQ3|UBP11_ARATH Putative ubiquitin carboxyl-terminal hydrolase 11 OS=Arabidopsis
thaliana GN=UBP11 PE=3 SV=2
Length = 892
Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 61/119 (51%), Gaps = 5/119 (4%)
Query: 180 GIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINY-ARVKRPPGDSSFLLVQRFGELM 238
G+ GL N+ + N LQ L H P+ +YFL++ K P G L + FGEL+
Sbjct: 299 GLGGLQNLGNTCFMNSTLQCLAHTPPIVEYFLQDYRSDINAKNPLGMRGELAIA-FGELL 357
Query: 239 RKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKK 297
RKLW+ + ++ V+P + ++ QF Q D + L++ L+ LH LN K+K
Sbjct: 358 RKLWS--SGQNTVAPRAFKTKLARFA-PQFSGYNQHDSQEMLAFLLDGLHEDLNKVKRK 413
>sp|Q5REG5|UBP33_PONAB Ubiquitin carboxyl-terminal hydrolase 33 OS=Pongo abelii GN=USP33
PE=2 SV=1
Length = 914
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 72/287 (25%), Positives = 117/287 (40%), Gaps = 44/287 (15%)
Query: 11 CPYLDT---INRQLLDFDFEKLCSVSLSR-INVYACLVCGKYFQGRGTNTFAYT--HSVA 64
CP+LD+ I ++ L + C R N++ACL + G G + ++ HS
Sbjct: 8 CPHLDSVGEITKEDLIQKSQGTCQDCKVRGPNLWACLENRCSYVGCGESQVDHSTIHSQE 67
Query: 65 ESHHVFLNLHTLKFYCLPDNYEIVGTVAGPVVNRLCPYLDTINRQLLDFDFEKLCSVSLS 124
H++ +NL TL+ +C + E+ +LD R+L SL
Sbjct: 68 TKHYLTVNLTTLRVWCYACSKEV--------------FLD---RKLG-------TQPSLP 103
Query: 125 RINVYACLVCGKYFQDSSLDDIKYVLNPTFTTDQIKQLDLSDKMSRAIDGTLYLPGIVGL 184
+ Q++S+ D K N T T + D D + + L G+ GL
Sbjct: 104 HVRQ------PHQIQENSVQDFKIPSNTTLKTPLVAVFDDLD-IEVDEEDELRARGLTGL 156
Query: 185 NNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNP 244
NI Y N LQAL + PL +FL AR + P + + + +LM +LW+
Sbjct: 157 KNIGNTCYMNAALQALSNCPPLTQFFLDCGGLARTDKKPA-----ICKSYLKLMTELWH- 210
Query: 245 RNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRAL 291
++ V P + Q + F+ Q D +FL ++ LH L
Sbjct: 211 KSRPGSVVPTNLFQGIKT-VNPTFRGYSQQDAQEFLRCLMDLLHEEL 256
>sp|A6QNM7|UBP33_BOVIN Ubiquitin carboxyl-terminal hydrolase 33 OS=Bos taurus GN=USP33
PE=2 SV=1
Length = 912
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 69/287 (24%), Positives = 112/287 (39%), Gaps = 44/287 (15%)
Query: 11 CPYLDTINR----QLLDFDFEKLCSVSLSRINVYACLVCGKYFQGRGTNTFAYT--HSVA 64
CP+LD++ L+ + N++ACL + G G + ++ HS
Sbjct: 8 CPHLDSVGEITKEDLIQKSHGSCQDCKVRGPNLWACLENRCSYVGCGESQVDHSTIHSQE 67
Query: 65 ESHHVFLNLHTLKFYCLPDNYEIVGTVAGPVVNRLCPYLDTINRQLLDFDFEKLCSVSLS 124
H++ +NL TL+ +C + E+ +LD R+L SL
Sbjct: 68 TKHYLTVNLTTLRVWCYACSKEV--------------FLD---RKLG-------TQPSLP 103
Query: 125 RINVYACLVCGKYFQDSSLDDIKYVLNPTFTTDQIKQLDLSDKMSRAIDGTLYLPGIVGL 184
+ Q++ + D K N T T + D D D L G+ GL
Sbjct: 104 HVKPL------HQIQENGVQDFKIPSNTTLKTPLVAVFDDLDIEVEEED-ELKARGLTGL 156
Query: 185 NNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNP 244
NI Y N LQAL + PL +FL AR + P + + + +LM +LW+
Sbjct: 157 KNIGNTCYMNAALQALSNCPPLTQFFLDCGGLARTDKKPA-----ICKSYLKLMTELWH- 210
Query: 245 RNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRAL 291
++ V P + Q + F+ Q D +FL ++ LH L
Sbjct: 211 KSRPGSVVPTTLFQGIKT-VNPTFRGYSQQDAQEFLRCLMDLLHEEL 256
>sp|Q9ZSB5|UBP10_ARATH Ubiquitin carboxyl-terminal hydrolase 10 OS=Arabidopsis thaliana
GN=UBP10 PE=2 SV=2
Length = 923
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 61/118 (51%), Gaps = 3/118 (2%)
Query: 180 GIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMR 239
G+ GL+N+ + N LQ L H P+ +YFL++ + + P L FG+L++
Sbjct: 302 GLAGLSNLGNTCFMNSALQCLAHTPPIVEYFLQDYSDDINRDNPLGMCGELAIAFGDLLK 361
Query: 240 KLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKK 297
KLW+ + ++ V+P + ++ QF Q D + L++ L+ LH LN K+K
Sbjct: 362 KLWS--SGRNAVAPRAFKTKLARFA-PQFSGYNQHDSQELLAFLLDGLHEDLNKVKRK 416
>sp|Q93Y01|UBP9_ARATH Ubiquitin carboxyl-terminal hydrolase 9 OS=Arabidopsis thaliana
GN=UBP9 PE=2 SV=1
Length = 910
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 61/118 (51%), Gaps = 3/118 (2%)
Query: 180 GIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMR 239
G+ GL+N+ + N LQ L H P+ +YFL++ + + P L FG+L++
Sbjct: 301 GLAGLSNLGNTCFMNSALQCLAHTPPIVEYFLQDYSDDINRDNPLGMCGELAIAFGDLLK 360
Query: 240 KLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKK 297
KLW+ + ++ V+P + ++ QF Q D + L++ L+ LH LN K+K
Sbjct: 361 KLWS--SGRNSVAPRAFKTKLARFA-PQFSGYNQHDSQELLAFLLDGLHEDLNKVKRK 415
>sp|A7Z056|UBP20_BOVIN Ubiquitin carboxyl-terminal hydrolase 20 OS=Bos taurus GN=USP20
PE=2 SV=1
Length = 912
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 66/289 (22%), Positives = 115/289 (39%), Gaps = 55/289 (19%)
Query: 10 LCPYLDTIN---RQLLDFDFEKLC-SVSLSRINVYACLVCGKYFQGRGTNTFAYT--HSV 63
LCP+LD+I ++ L + C S +S N++ACL + G G + ++ H+
Sbjct: 7 LCPHLDSIGEVTKEDLLLKSKSTCQSCGVSGPNLWACLQVSCSYVGCGESFADHSTLHAQ 66
Query: 64 AESHHVFLNLHTLKFYCLPDNYEIVGTVAGPVVNRLCPYLDTINRQLLDFDFEKLCSVSL 123
A+ H++ +NL T + +C E+ +L+
Sbjct: 67 AKKHNLTVNLTTFRVWCYACEKEV--------------FLEP------------------ 94
Query: 124 SRINVYACLVCGKYF-QDSSLDDIKYVLNPTFTTDQIKQLDLSDKMSRAIDGTLYLPGIV 182
R+ + K+ QDS P D+ + S + D L G+
Sbjct: 95 -RLAAHPPGPAPKFSEQDSPPPSHPLKAVPIAVADEGE--------SESEDDDLKPRGLT 145
Query: 183 GLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLW 242
G+ N+ + Y N LQAL + PL +FL R + P L + + +L+ ++W
Sbjct: 146 GMKNLGNSCYMNAALQALSNCPPLTQFFLECGGLVRTDKKPA-----LCKSYQKLVSEVW 200
Query: 243 NPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRAL 291
+ R S+V P + + L F+ Q D +FL ++ LH L
Sbjct: 201 H-RKRPSYVVPTSLSHGIKL-VNPMFRGYAQQDTQEFLRCLMDQLHEEL 247
>sp|Q9Y2K6|UBP20_HUMAN Ubiquitin carboxyl-terminal hydrolase 20 OS=Homo sapiens GN=USP20
PE=1 SV=2
Length = 914
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 66/293 (22%), Positives = 115/293 (39%), Gaps = 63/293 (21%)
Query: 10 LCPYLDTIN---RQLLDFDFEKLC-SVSLSRINVYACLV-------CGKYFQGRGTNTFA 58
LCP+LD+I ++ L + C S ++ N++ACL CG+ F T
Sbjct: 7 LCPHLDSIGEVTKEDLLLKSKGTCQSCGVTGPNLWACLQVACPYVGCGESFADHST---- 62
Query: 59 YTHSVAESHHVFLNLHTLKFYCLPDNYEIVGTVAGPVVNRLCPYLDTINRQLLDFDFEKL 118
H+ A+ H++ +NL T + +C E+ F ++L
Sbjct: 63 -IHAQAKKHNLTVNLTTFRLWCYACEKEV-------------------------FLEQRL 96
Query: 119 CSVSLSRINVYACLVCGKYFQDSSLDDIKYVLNPTFTTDQIKQLDLSDKMSRAIDGTLYL 178
+ L + ++ QDS P D+ + S + D L
Sbjct: 97 AAPLLGSSSKFS-------EQDSPPPSHPLKAVPIAVADEGE--------SESEDDDLKP 141
Query: 179 PGIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELM 238
G+ G+ N+ + Y N LQAL + PL +FL R + P L + + +L+
Sbjct: 142 RGLTGMKNLGNSCYMNAALQALSNCPPLTQFFLECGGLVRTDKKPA-----LCKSYQKLV 196
Query: 239 RKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRAL 291
++W+ + S+V P + + L F+ Q D +FL ++ LH L
Sbjct: 197 SEVWHKKR-PSYVVPTSLSHGIKL-VNPMFRGYAQQDTQEFLRCLMDQLHEEL 247
>sp|A5PMR2|UBP33_DANRE Ubiquitin carboxyl-terminal hydrolase 33 OS=Danio rerio GN=usp33
PE=2 SV=1
Length = 897
Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 62/292 (21%), Positives = 110/292 (37%), Gaps = 43/292 (14%)
Query: 6 VVNRLCPYLDTINR----QLLDFDFEKLCSVSLSRINVYACLVCGKYFQGRGTNTFAYT- 60
V + CP+L+ + +L+ + + N++ACL G + G G + ++
Sbjct: 4 VSSNDCPHLECVGEITKEELIQKSHGQCQDCKVGGPNLWACLENGCSYVGCGESHADHST 63
Query: 61 -HSVAESHHVFLNLHTLKFYCLPDNYEIVGTVAGPVVNRLCPYLDTINRQLLDFDFEKLC 119
HS H++ +NL TL+ +C E+ + +L P+ N + C
Sbjct: 64 VHSQETRHNLTVNLTTLRVWCYACTKEVF------LERKLGPHKQLPNAAKAVSPVQTPC 117
Query: 120 SVSLSRINVYACLVCGKYFQDSSLDDIKYVLNPTFTTDQIKQLDLSDKMSRAIDGTLYLP 179
+N + + DD+ M + L
Sbjct: 118 Q----DLNTPGSPTSLRVPSAGTCDDLD--------------------METEEEDELRTR 153
Query: 180 GIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMR 239
G+ GL NI Y N LQAL + PL +FL + + P L + + +L+
Sbjct: 154 GLTGLKNIGNTCYMNAALQALSNCPPLTQFFLECGGLVKTDKKPA-----LCKSYQKLIT 208
Query: 240 KLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRAL 291
LW+ +N ++V P + Q + F+ Q D +FL ++ LH L
Sbjct: 209 DLWH-KNRNAYVVPTNLFQGIKA-VNPMFRGYSQQDSQEFLRCLMDQLHEEL 258
>sp|Q5R5Z6|UBP20_PONAB Ubiquitin carboxyl-terminal hydrolase 20 OS=Pongo abelii GN=USP20
PE=2 SV=1
Length = 913
Score = 55.5 bits (132), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 69/293 (23%), Positives = 110/293 (37%), Gaps = 64/293 (21%)
Query: 10 LCPYLDTINR----QLLDFDFEKLCSVSLSRINVYACLV-------CGKYFQGRGTNTFA 58
LCP+LD+I LL S ++ N++ACL CG+ F T
Sbjct: 7 LCPHLDSIGEVTKEDLLLKSMGTCQSCGVTGPNLWACLQVACPYVGCGESFADHST---- 62
Query: 59 YTHSVAESHHVFLNLHTLKFYCLPDNYEIVGTVAGPVVNRLCPYLDTINRQLLDFDFEKL 118
H+ A+ H++ +NL T + +C E+ + RL L L
Sbjct: 63 -IHAQAKKHNLTVNLTTFRLWCYACEKEVF------LEQRLAAPL--------------L 101
Query: 119 CSVSLSRINVYACLVCGKYFQDSSLDDIKYVLNPTFTTDQIKQLDLSDKMSRAIDGTLYL 178
S S QDS P D+ + S + D L
Sbjct: 102 GSSKFSE-------------QDSPPPSHPLKAVPIAVADEGE--------SESEDDDLKP 140
Query: 179 PGIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELM 238
G+ G+ N+ + Y N LQAL + PL +FL R + P L + + +L+
Sbjct: 141 RGLTGMKNLGNSCYMNAALQALSNCPPLTQFFLECGGLVRTDKKPA-----LCKSYQKLV 195
Query: 239 RKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRAL 291
++W+ + S+V P + + L F+ Q D +FL ++ LH L
Sbjct: 196 SEVWHKKR-PSYVVPTSLSHGIKL-VNPMFRGYAQQDTQEFLRCLMDQLHEEL 246
>sp|Q8C6M1|UBP20_MOUSE Ubiquitin carboxyl-terminal hydrolase 20 OS=Mus musculus GN=Usp20
PE=1 SV=1
Length = 916
Score = 55.1 bits (131), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 64/289 (22%), Positives = 112/289 (38%), Gaps = 53/289 (18%)
Query: 10 LCPYLDTIN---RQLLDFDFEKLC-SVSLSRINVYACL--VCGKYFQGRGTNTFAYTHSV 63
LCP+LD I ++ L + C S ++ N++ACL C G + H+
Sbjct: 7 LCPHLDCIGEVTKEDLLLKSKGTCQSCGVAGPNLWACLQVTCPYVGCGESFADHSSIHAQ 66
Query: 64 AESHHVFLNLHTLKFYCLPDNYEIVGTVAGPVVNRLCPYLDTINRQLLDFDFEKLCSVSL 123
+ H++ +NL T + +C E+ + RL +L + + +L +
Sbjct: 67 VKKHNLTVNLTTFRVWCYACEREVF------LEQRLAVHLASSSARLSE----------- 109
Query: 124 SRINVYACLVCGKYFQDSSLDDIKYVLNPTFTTDQIKQLDLSDKMSRAIDGTLYLPGIVG 183
QDS P D+ + S + D L G+ G
Sbjct: 110 ---------------QDSPPPSHPLKAVPIAVADEGE--------SESEDDDLKPRGLTG 146
Query: 184 LNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWN 243
+ N+ + Y N LQAL + PL +FL R + P L + + +L+ ++W+
Sbjct: 147 MKNLGNSCYMNAALQALSNCPPLTQFFLECGGLVRTDKKPA-----LCKSYQKLISEVWH 201
Query: 244 PRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALN 292
+ S+V P + + L F+ Q D +FL ++ LH L
Sbjct: 202 KKR-PSYVVPTSLSHGIKL-VNPMFRGYAQQDTQEFLRCLMDQLHEELK 248
>sp|O94966|UBP19_HUMAN Ubiquitin carboxyl-terminal hydrolase 19 OS=Homo sapiens GN=USP19
PE=1 SV=2
Length = 1318
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 57/125 (45%), Gaps = 12/125 (9%)
Query: 178 LPGIVGLNNIKANDYCNVILQALCHVTPLRDY-----FLREINYARVKRPPGDSSFLLVQ 232
LPG GL N+ + N ++Q+L + LRD+ F EINY P G L +
Sbjct: 493 LPGFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINY---NNPLGTGGRLAIG 549
Query: 233 RFGELMRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALN 292
F L+R LW H L+A+V QF Q D +F+++ L+ LH LN
Sbjct: 550 -FAVLLRALW---KGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLN 605
Query: 293 GTKKK 297
+ K
Sbjct: 606 RIQNK 610
>sp|Q9C585|UBP8_ARATH Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana
GN=UBP8 PE=1 SV=2
Length = 871
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 56/124 (45%), Gaps = 6/124 (4%)
Query: 174 GTLYLPGIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQR 233
GTL G+ GL N+ + N LQ L H L D+FL E + P +
Sbjct: 274 GTL---GLTGLQNLGNTCFMNSSLQCLAHTPKLVDFFLGEYSKEINLDNPLGMKGEIALA 330
Query: 234 FGELMRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNG 293
FG+L+R LW P S V+P +A + QF Q D + L++ L+ LH LN
Sbjct: 331 FGDLLRSLWAPG--ASTVAPR-TFKAKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNR 387
Query: 294 TKKK 297
K K
Sbjct: 388 VKNK 391
>sp|Q6P8X6|UBP50_MOUSE Putative ubiquitin carboxyl-terminal hydrolase 50 OS=Mus musculus
GN=Usp50 PE=2 SV=1
Length = 390
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 53/116 (45%), Gaps = 7/116 (6%)
Query: 177 YLPGIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGE 236
+ G+ GL N+ Y N ILQ LC V+PL +YFL +K+ + + F
Sbjct: 40 HFQGVTGLRNLGNTCYMNAILQCLCSVSPLVEYFLSGKYITALKKDCSE----VTTAFAY 95
Query: 237 LMRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALN 292
LM +W VSP L AV + T+Q D +FL + LN LH AL
Sbjct: 96 LMTDMW--LGDSDCVSPEIFLSAVGSLYPAFLKKTQQ-DAQEFLIYVLNELHEALK 148
>sp|Q6J1Y9|UBP19_RAT Ubiquitin carboxyl-terminal hydrolase 19 OS=Rattus norvegicus
GN=Usp19 PE=1 SV=1
Length = 1357
Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 59/125 (47%), Gaps = 12/125 (9%)
Query: 178 LPGIVGLNNIKANDYCNVILQALCHVTPLRDY-----FLREINYARVKRPPGDSSFLLVQ 232
LPG GL N+ + N ++Q+L + LRD+ F EINY P G L +
Sbjct: 532 LPGFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINY---NNPLGTGGRLAIG 588
Query: 233 RFGELMRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALN 292
F L+R LW + P + L+A+V QF Q D +F+++ L+ LH LN
Sbjct: 589 -FAVLLRALW--KGTHQAFQPSK-LKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLN 644
Query: 293 GTKKK 297
+ K
Sbjct: 645 RIQNK 649
>sp|Q3UJD6|UBP19_MOUSE Ubiquitin carboxyl-terminal hydrolase 19 OS=Mus musculus GN=Usp19
PE=2 SV=1
Length = 1360
Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 59/125 (47%), Gaps = 12/125 (9%)
Query: 178 LPGIVGLNNIKANDYCNVILQALCHVTPLRDY-----FLREINYARVKRPPGDSSFLLVQ 232
LPG GL N+ + N ++Q+L + LRD+ F EINY P G L +
Sbjct: 535 LPGFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINY---NNPLGTGGRLAIG 591
Query: 233 RFGELMRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALN 292
F L+R LW + P + L+A+V QF Q D +F+++ L+ LH LN
Sbjct: 592 -FAVLLRALW--KGTHQAFQPSK-LKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLN 647
Query: 293 GTKKK 297
+ K
Sbjct: 648 RIQNK 652
>sp|P51784|UBP11_HUMAN Ubiquitin carboxyl-terminal hydrolase 11 OS=Homo sapiens GN=USP11
PE=1 SV=3
Length = 963
Score = 52.0 bits (123), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 66/140 (47%), Gaps = 12/140 (8%)
Query: 164 LSDKMSRAIDGTLYLPGIVGLNNIKANDYCNVILQALCHVTPLRDYF-----LREINYAR 218
+++ MS + PGI GL N+ + N LQ L +V L +YF L E+N+
Sbjct: 291 MNNNMSEEDEDFKGQPGICGLTNLGNTCFMNSALQCLSNVPQLTEYFLNNCYLEELNF-- 348
Query: 219 VKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPID 278
R P + + + +L+++ W+ + PH V ++ QF +Q D +
Sbjct: 349 --RNPLGMKGEIAEAYADLVKQAWS--GHHRSIVPHVFKNKVGHFA-SQFLGYQQHDSQE 403
Query: 279 FLSWFLNTLHRALNGTKKKD 298
LS+ L+ LH LN KKK+
Sbjct: 404 LLSFLLDGLHEDLNRVKKKE 423
>sp|Q9Y4E8|UBP15_HUMAN Ubiquitin carboxyl-terminal hydrolase 15 OS=Homo sapiens GN=USP15
PE=1 SV=3
Length = 981
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 64/124 (51%), Gaps = 12/124 (9%)
Query: 179 PGIVGLNNIKANDYCNVILQALCHVTPLRDYFL-----REINYARVKRPPGDSSFLLVQR 233
PG+ GL+N+ + N +Q L + PL +YFL E+N+ G+ + +
Sbjct: 286 PGLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGE----IAKS 341
Query: 234 FGELMRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNG 293
+ EL++++W+ + S+V+P V ++ QF +Q D + L++ L+ LH LN
Sbjct: 342 YAELIKQMWSGK--FSYVTPRAFKTQVGRFA-PQFSGYQQQDCQELLAFLLDGLHEDLNR 398
Query: 294 TKKK 297
+KK
Sbjct: 399 IRKK 402
>sp|Q2HJE4|UBP15_BOVIN Ubiquitin carboxyl-terminal hydrolase 15 OS=Bos taurus GN=USP15
PE=2 SV=1
Length = 952
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 63/124 (50%), Gaps = 12/124 (9%)
Query: 179 PGIVGLNNIKANDYCNVILQALCHVTPLRDYFL-----REINYARVKRPPGDSSFLLVQR 233
PG+ GL+N+ + N Q L + PL +YFL E+N+ G+ + +
Sbjct: 257 PGLCGLSNLGNTCFMNSAFQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGE----IAKS 312
Query: 234 FGELMRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNG 293
+ EL++++W+ + S+V+P V ++ QF +Q D + L++ L+ LH LN
Sbjct: 313 YAELIKQMWSGK--YSYVTPRAFKTQVGRFA-PQFSGYQQQDCQELLAFLLDGLHEDLNR 369
Query: 294 TKKK 297
+KK
Sbjct: 370 IRKK 373
>sp|Q9R085|UBP15_RAT Ubiquitin carboxyl-terminal hydrolase 15 OS=Rattus norvegicus
GN=Usp15 PE=1 SV=1
Length = 952
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 64/124 (51%), Gaps = 12/124 (9%)
Query: 179 PGIVGLNNIKANDYCNVILQALCHVTPLRDYFL-----REINYARVKRPPGDSSFLLVQR 233
PG+ GL+N+ + N +Q L + PL +YFL E+N+ G+ + +
Sbjct: 257 PGLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGE----IAKS 312
Query: 234 FGELMRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNG 293
+ EL++++W+ + S+V+P V ++ QF +Q D + L++ L+ LH LN
Sbjct: 313 YAELIKQMWSGK--FSYVTPRAFKTQVGRFA-PQFSGYQQQDCQELLAFLLDGLHEDLNR 369
Query: 294 TKKK 297
+KK
Sbjct: 370 IRKK 373
>sp|Q28CN3|UBP33_XENTR Ubiquitin carboxyl-terminal hydrolase 33 OS=Xenopus tropicalis
GN=usp33 PE=2 SV=1
Length = 892
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 50/112 (44%), Gaps = 7/112 (6%)
Query: 180 GIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMR 239
G+ GL NI Y N LQAL + PL YFL AR + P L + + +LM
Sbjct: 146 GLTGLKNIGNTCYMNAALQALSNCPPLTHYFLDCGGLARTDKKPA-----LCKSYQKLMS 200
Query: 240 KLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRAL 291
+W+ +N V P + Q + F+ Q D +FL ++ LH L
Sbjct: 201 DIWH-KNRPGFVIPTNLFQGIKS-VNPTFRGYSQQDAQEFLRCLMDVLHEEL 250
>sp|Q8R5H1|UBP15_MOUSE Ubiquitin carboxyl-terminal hydrolase 15 OS=Mus musculus GN=Usp15
PE=2 SV=1
Length = 981
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 64/124 (51%), Gaps = 12/124 (9%)
Query: 179 PGIVGLNNIKANDYCNVILQALCHVTPLRDYFL-----REINYARVKRPPGDSSFLLVQR 233
PG+ GL+N+ + N +Q L + PL +YFL E+N+ G+ + +
Sbjct: 286 PGLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGE----IAKS 341
Query: 234 FGELMRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNG 293
+ EL++++W+ + S+V+P V ++ QF +Q D + L++ L+ LH LN
Sbjct: 342 YAELIKQMWSGK--FSYVTPRAFKTQVGRFA-PQFSGYQQQDCQELLAFLLDGLHEDLNR 398
Query: 294 TKKK 297
+KK
Sbjct: 399 IRKK 402
>sp|P39538|UBP12_YEAST Ubiquitin carboxyl-terminal hydrolase 12 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=UBP12 PE=1
SV=1
Length = 1254
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 61/127 (48%), Gaps = 12/127 (9%)
Query: 180 GIVGLNNIKANDYCNVILQALCHVTPLRDYFL-----REINYARVKRPPGDSSFLLVQRF 234
G GL N+ Y N LQ L H+ LRDYFL EIN + P G + + + F
Sbjct: 362 GTTGLVNLGNTCYMNSALQCLVHIPQLRDYFLYDGYEDEINE---ENPLGYHGY-VARAF 417
Query: 235 GELMRKLWNPRNF---KSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRAL 291
+L++KL+ R ++ P M ++ + F Q D +FL++ L++LH L
Sbjct: 418 SDLVQKLFQNRMSIMQRNAAFPPSMFKSTIGHFNSMFSGYMQQDSQEFLAFLLDSLHEDL 477
Query: 292 NGTKKKD 298
N KK+
Sbjct: 478 NRIIKKE 484
>sp|Q99K46|UBP11_MOUSE Ubiquitin carboxyl-terminal hydrolase 11 OS=Mus musculus GN=Usp11
PE=2 SV=4
Length = 921
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 12/125 (9%)
Query: 179 PGIVGLNNIKANDYCNVILQALCHVTPLRDYF-----LREINYARVKRPPGDSSFLLVQR 233
PGI GL N+ + N LQ L +V L +YF L E+N+ R P L +
Sbjct: 254 PGICGLTNLGNTCFMNSALQCLSNVPQLTEYFLNNRYLEELNF----RNPLGMKGELAEA 309
Query: 234 FGELMRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNG 293
+ +L+++ W+ + + P+ V ++ QF +Q D + LS+ L+ LH LN
Sbjct: 310 YADLVKQTWS--GYHRSIVPNVFKNKVGHFA-SQFLGYQQHDSQELLSFLLDGLHEDLNR 366
Query: 294 TKKKD 298
KKK+
Sbjct: 367 VKKKE 371
>sp|F6Z5C0|UBP15_XENTR Ubiquitin carboxyl-terminal hydrolase 15 OS=Xenopus tropicalis
GN=usp15 PE=2 SV=2
Length = 982
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 6/121 (4%)
Query: 179 PGIVGLNNIKANDYCNVILQALCHVTPLRDYFLREI--NYARVKRPPGDSSFLLVQRFGE 236
PG+ GL+N+ + N +Q L + PL +YFL + + + P G + + + E
Sbjct: 285 PGLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQDELNMDNPLGMRG-EIAKSYAE 343
Query: 237 LMRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKK 296
L++++W+ + S+V+P V ++ QF +Q D + L++ L+ LH LN +K
Sbjct: 344 LIKQMWSGK--YSYVTPRAFKTQVGRFA-PQFSGYQQQDCQELLAFLLDGLHEDLNRIRK 400
Query: 297 K 297
K
Sbjct: 401 K 401
>sp|Q8CEG8|UBP27_MOUSE Ubiquitin carboxyl-terminal hydrolase 27 OS=Mus musculus GN=Usp27
PE=2 SV=2
Length = 438
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 67/142 (47%), Gaps = 7/142 (4%)
Query: 152 PTFTTDQIKQLDLSDKMSRAIDGTLYLPGIVGLNNIKANDYCNVILQALCHVTPLRDYFL 211
PT+ T + + L R + + G+ GL N+ + N I+QAL H LRD+FL
Sbjct: 48 PTWETTKPELELLGHNPRRRRIASSFTIGLRGLINLGNTCFMNCIVQALTHTPILRDFFL 107
Query: 212 REINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFT 271
+ + + P LV L R+L++ N HV P+++L V + +R +
Sbjct: 108 SDRHRCEMPSP----ELCLVCEMSSLFRELYS-GNPSPHV-PYKLLHLVWIHARHLAGYR 161
Query: 272 EQSDPIDFLSWFLNTLHRALNG 293
+Q D +FL L+ LHR G
Sbjct: 162 QQ-DAHEFLIAALDVLHRHCKG 182
>sp|Q4R6D3|UBP50_MACFA Putative ubiquitin carboxyl-terminal hydrolase 50 OS=Macaca
fascicularis GN=USP50 PE=2 SV=1
Length = 373
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 51/112 (45%), Gaps = 7/112 (6%)
Query: 180 GIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMR 239
G+ GL N+ Y N ILQ LC ++PL +YFL ++ + + F LM
Sbjct: 42 GVTGLRNLGNTCYMNAILQCLCSISPLVEYFLSGKYITALQNDCSE----VATAFAYLMT 97
Query: 240 KLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRAL 291
+W VSP E+ ++ + F Q D +FL + LN LH AL
Sbjct: 98 DMW--LGDSDCVSP-EIFRSALGNLYPAFTKKTQQDAQEFLIYVLNELHEAL 146
>sp|Q9QZL6|UBP21_MOUSE Ubiquitin carboxyl-terminal hydrolase 21 OS=Mus musculus GN=Usp21
PE=1 SV=1
Length = 566
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 4/123 (3%)
Query: 180 GIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMR 239
G VGL N+ + N +LQ L PLRD+ LR V P G + L + F +++
Sbjct: 210 GHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEV--PGGGRAQELTEAFADVIG 267
Query: 240 KLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDS 299
LW+P + ++ V+P +AV F Q D +FL + LH +N ++
Sbjct: 268 ALWHPDSCEA-VNP-TRFRAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAP 325
Query: 300 SIV 302
I+
Sbjct: 326 PIL 328
>sp|O75604|UBP2_HUMAN Ubiquitin carboxyl-terminal hydrolase 2 OS=Homo sapiens GN=USP2
PE=1 SV=2
Length = 605
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 59/115 (51%), Gaps = 7/115 (6%)
Query: 180 GIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMR 239
G+ GL N+ + N ILQ L + LRDY L+ + Y R ++ LV+ F +L++
Sbjct: 265 GLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRL-YMRDLHHGSNAHTALVEEFAKLIQ 323
Query: 240 KLW--NPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALN 292
+W +P + VSP E + ++ + + +Q D +FL + L+ LH +N
Sbjct: 324 TIWTSSPNDV---VSPSEFKTQIQRYAPRFVGYNQQ-DAQEFLRFLLDGLHNEVN 374
>sp|Q9UK80|UBP21_HUMAN Ubiquitin carboxyl-terminal hydrolase 21 OS=Homo sapiens GN=USP21
PE=1 SV=1
Length = 565
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 4/123 (3%)
Query: 180 GIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMR 239
G VGL N+ + N +LQ L PLRD+ LR V P G + L + F +++
Sbjct: 210 GHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEV--PGGGRAQELTEAFADVIG 267
Query: 240 KLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDS 299
LW+P + ++ V+P +AV F Q D +FL + LH +N ++
Sbjct: 268 ALWHPDSCEA-VNP-TRFRAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAP 325
Query: 300 SIV 302
I+
Sbjct: 326 PIL 328
>sp|Q70EL4|UBP43_HUMAN Ubiquitin carboxyl-terminal hydrolase 43 OS=Homo sapiens GN=USP43
PE=1 SV=2
Length = 1123
Score = 48.9 bits (115), Expect = 5e-05, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 9/118 (7%)
Query: 179 PGIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELM 238
PG GL N + N ++Q L + L ++ + R + PG + + ++ L+
Sbjct: 98 PGAQGLKNHGNTCFMNAVVQCLSNTDLLAEF----LALGRYRAAPGRAE--VTEQLAALV 151
Query: 239 RKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKK 296
R LW R + +S E AV + QFQ Q D ++FL W L+ +H L G+ +
Sbjct: 152 RALWT-REYTPQLSA-EFKNAVSKYG-SQFQGNSQHDALEFLLWLLDRVHEDLEGSSR 206
>sp|A6NNY8|UBP27_HUMAN Ubiquitin carboxyl-terminal hydrolase 27 OS=Homo sapiens GN=USP27X
PE=2 SV=3
Length = 438
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 67/142 (47%), Gaps = 7/142 (4%)
Query: 152 PTFTTDQIKQLDLSDKMSRAIDGTLYLPGIVGLNNIKANDYCNVILQALCHVTPLRDYFL 211
PT+ T + + L R + + G+ GL N+ + N I+QAL H LRD+FL
Sbjct: 48 PTWETTKPELELLGHNPRRRRITSSFTIGLRGLINLGNTCFMNCIVQALTHTPILRDFFL 107
Query: 212 REINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFT 271
+ + + P LV L R+L++ N HV P+++L V + +R +
Sbjct: 108 SDRHRCEMPSP----ELCLVCEMSSLFRELYS-GNPSPHV-PYKLLHLVWIHARHLAGYR 161
Query: 272 EQSDPIDFLSWFLNTLHRALNG 293
+Q D +FL L+ LHR G
Sbjct: 162 QQ-DAHEFLIAALDVLHRHCKG 182
>sp|B2GUX4|UBP21_RAT Ubiquitin carboxyl-terminal hydrolase 21 OS=Rattus norvegicus
GN=Usp21 PE=2 SV=1
Length = 565
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 4/123 (3%)
Query: 180 GIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMR 239
G VGL N+ + N +LQ L PLRD+ LR V P G + L + F +++
Sbjct: 210 GHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEV--PGGGRAQELTEAFADVIG 267
Query: 240 KLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDS 299
LW+P + ++ V+P +AV F Q D +FL + LH +N ++
Sbjct: 268 ALWHPDSCEA-VNP-TRFRAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAP 325
Query: 300 SIV 302
I+
Sbjct: 326 PIL 328
>sp|Q2KJ72|UBP21_BOVIN Ubiquitin carboxyl-terminal hydrolase 21 OS=Bos taurus GN=USP21
PE=2 SV=1
Length = 565
Score = 48.5 bits (114), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 4/126 (3%)
Query: 180 GIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMR 239
G VGL N+ + N +LQ L PLRD+ LR V P G + L + F +++
Sbjct: 210 GHVGLRNLGNTCFLNALLQCLSSTRPLRDFCLRRDFRQEV--PGGGRAQELTEAFADVIG 267
Query: 240 KLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDS 299
LW+P + ++ V+P +AV F Q D +FL + LH +N ++
Sbjct: 268 ALWHPDSCEA-VNP-TRFRAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAP 325
Query: 300 SIVYKT 305
I+ +
Sbjct: 326 PILASS 331
>sp|O22207|UBP5_ARATH Ubiquitin carboxyl-terminal hydrolase 5 OS=Arabidopsis thaliana
GN=UBP5 PE=1 SV=2
Length = 924
Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 11/122 (9%)
Query: 180 GIVGLNNIKANDYCNVILQALCHVTPLRDYFL----REINYARVKRPPGDSSFLLVQRFG 235
G+ GL N+ + N +Q L H YF +EIN+ + P G L + FG
Sbjct: 315 GLTGLLNLGNTCFMNSAIQCLVHTPEFASYFQEDYHQEINW---QNPLGMVGELALA-FG 370
Query: 236 ELMRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTK 295
+L+RKLW P ++ ++P + ++ QF Q D + L++ L+ LH LN K
Sbjct: 371 DLLRKLWAPG--RTPIAPRPFKAKLARFA-PQFSGYNQHDSQELLAFLLDGLHEDLNRVK 427
Query: 296 KK 297
K
Sbjct: 428 HK 429
>sp|Q8BUM9|UBP43_MOUSE Ubiquitin carboxyl-terminal hydrolase 43 OS=Mus musculus GN=Usp43
PE=2 SV=2
Length = 1132
Score = 48.1 bits (113), Expect = 9e-05, Method: Composition-based stats.
Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 9/116 (7%)
Query: 179 PGIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELM 238
PG GL N + N ++Q L + L ++ + R + PG + + ++ L+
Sbjct: 98 PGAQGLKNHGNTCFMNAVVQCLSNTDLLAEF----LALGRYRAAPGRAE--VTEQLAALV 151
Query: 239 RKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGT 294
R LW R + +S E AV + QFQ Q D ++FL W L+ +H L G+
Sbjct: 152 RALWT-REYTPQLSA-EFKNAVSKYG-SQFQGNSQHDALEFLLWLLDRVHEDLEGS 204
>sp|Q80U87|UBP8_MOUSE Ubiquitin carboxyl-terminal hydrolase 8 OS=Mus musculus GN=Usp8
PE=1 SV=2
Length = 1080
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 12/119 (10%)
Query: 179 PGIVGLNNIKANDYCNVILQALCHVTPLRDYFLR-----EINYARVKRPPGDSSFLLVQR 233
P + GL N+ Y N ILQ LC+ L DYF R +IN + + G+ + +
Sbjct: 736 PALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGE----VAEE 791
Query: 234 FGELMRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALN 292
FG +M+ LW + ++SP + + + QF + Q D + L + ++ LH LN
Sbjct: 792 FGIIMKALWTGQY--RYISPKD-FKVTIGKINDQFAGSSQQDSQELLLFLMDGLHEDLN 847
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.140 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 127,096,529
Number of Sequences: 539616
Number of extensions: 5249976
Number of successful extensions: 17773
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 72
Number of HSP's that attempted gapping in prelim test: 17602
Number of HSP's gapped (non-prelim): 176
length of query: 338
length of database: 191,569,459
effective HSP length: 118
effective length of query: 220
effective length of database: 127,894,771
effective search space: 28136849620
effective search space used: 28136849620
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (28.1 bits)