Query psy9878
Match_columns 338
No_of_seqs 216 out of 1896
Neff 7.8
Searched_HMMs 29240
Date Fri Aug 16 21:57:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9878.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9878hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ihp_A Ubiquitin carboxyl-term 100.0 4.9E-45 1.7E-49 383.6 21.1 269 8-320 193-494 (854)
2 3mhs_A Ubiquitin carboxyl-term 100.0 9.7E-45 3.3E-49 360.3 16.2 225 30-320 51-298 (476)
3 2y6e_A Ubiquitin carboxyl-term 100.0 9E-29 3.1E-33 237.4 15.1 139 176-317 3-169 (367)
4 2gfo_A Ubiquitin carboxyl-term 100.0 1.8E-28 6.2E-33 238.1 13.8 164 153-319 34-225 (396)
5 3nhe_A Ubiquitin carboxyl-term 99.9 3.3E-27 1.1E-31 223.8 15.3 139 176-317 4-169 (348)
6 3i3t_A Ubiquitin carboxyl-term 99.9 8.8E-27 3E-31 221.4 13.5 134 180-317 2-177 (355)
7 2ayn_A Ubiquitin carboxyl-term 99.9 3.2E-26 1.1E-30 222.0 10.7 140 178-322 11-173 (404)
8 1vjv_A Ubiquitin carboxyl-term 99.9 5.2E-25 1.8E-29 214.6 13.0 130 178-317 21-160 (415)
9 1nb8_A Ubiquitin carboxyl-term 99.9 8.1E-25 2.8E-29 209.2 14.0 127 178-318 3-129 (353)
10 3c5k_A HD6, histone deacetylas 99.9 3.2E-24 1.1E-28 170.0 7.1 84 6-89 2-86 (109)
11 2f1z_A Ubiquitin carboxyl-term 99.9 3.8E-23 1.3E-27 207.4 12.5 129 176-318 170-298 (522)
12 2uzg_A Ubiquitin carboxyl-term 99.9 8.4E-23 2.9E-27 158.9 4.8 81 8-88 3-89 (97)
13 2g45_A Ubiquitin carboxyl-term 99.9 8.5E-22 2.9E-26 160.4 7.7 80 9-89 13-107 (129)
14 2i50_A Ubiquitin carboxyl-term 99.8 1.4E-20 4.7E-25 153.0 5.2 100 7-110 3-125 (126)
15 2ida_A Hypothetical protein; z 99.8 2.8E-20 9.5E-25 144.6 6.4 79 9-90 3-88 (102)
16 2vhf_A Ubiquitin carboxyl-term 99.6 8.8E-16 3E-20 144.7 4.0 117 181-307 9-137 (374)
17 3ihp_A Ubiquitin carboxyl-term 88.6 0.32 1.1E-05 51.1 4.4 40 30-73 49-92 (854)
18 3mp2_A Non-structural protein 73.5 7.9 0.00027 33.3 6.7 73 179-287 11-83 (211)
19 2fe8_A PP1AB, ORF1AB, replicas 69.2 7.1 0.00024 35.8 5.8 79 178-287 99-177 (315)
20 1qmy_A Protease, leader protea 68.8 2.6 8.9E-05 33.9 2.4 23 180-202 12-34 (167)
21 2xzl_A ATP-dependent helicase 60.5 4.9 0.00017 41.8 3.3 56 29-84 13-78 (802)
22 2wjy_A Regulator of nonsense t 51.1 6.9 0.00024 40.6 2.5 56 29-84 8-73 (800)
23 1wg2_A Zinc finger (AN1-like) 49.5 9 0.00031 26.5 2.1 25 27-52 15-41 (64)
24 1wfh_A Zinc finger (AN1-like) 47.8 11 0.00037 26.1 2.3 25 27-52 15-41 (64)
25 1x4w_A Hypothetical protein FL 39.6 8.2 0.00028 26.9 0.6 24 28-52 16-44 (67)
26 1wff_A Riken cDNA 2810002D23 p 38.7 17 0.00057 26.6 2.2 23 28-51 26-51 (85)
27 2yqq_A Zinc finger HIT domain- 37.2 12 0.00041 25.1 1.1 23 28-51 13-35 (56)
28 2ffw_A Midline-1; B-BOX, ring 35.3 16 0.00053 26.0 1.6 37 29-69 32-75 (78)
29 2csh_A Zinc finger protein 297 35.0 22 0.00075 25.9 2.5 73 33-140 4-77 (110)
30 2d8v_A Zinc finger FYVE domain 32.7 20 0.00069 24.8 1.7 31 26-57 7-39 (67)
31 1wfp_A Zinc finger (AN1-like) 30.7 23 0.00079 25.1 1.8 24 28-52 26-51 (74)
32 2lvu_A Zinc finger and BTB dom 35.8 11 0.00038 19.2 0.0 23 39-61 2-25 (26)
33 2iqj_A Stromal membrane-associ 29.1 27 0.00093 27.7 2.2 52 23-78 23-74 (134)
34 2m0e_A Zinc finger and BTB dom 28.8 11 0.00038 19.5 -0.1 23 40-62 3-26 (29)
35 3c5t_B Exendin-4, exenatide; l 28.2 24 0.0008 20.7 1.2 11 276-286 11-21 (31)
36 4ayb_P DNA-directed RNA polyme 28.1 9.5 0.00033 24.6 -0.5 12 38-49 2-13 (48)
37 2jun_A Midline-1; B-BOX, TRIM, 27.2 26 0.00087 25.7 1.7 38 29-70 5-49 (101)
38 2owa_A Arfgap-like finger doma 27.0 32 0.0011 27.5 2.3 50 25-78 34-83 (138)
39 1x4s_A Protein FON, zinc finge 26.5 17 0.00058 24.7 0.4 26 26-51 10-38 (59)
40 2kvh_A Zinc finger and BTB dom 26.2 14 0.00047 19.1 -0.0 13 39-51 3-15 (27)
41 2elt_A Zinc finger protein 406 26.0 21 0.00072 19.7 0.8 28 35-62 5-33 (36)
42 3sub_A ADP-ribosylation factor 25.9 34 0.0012 28.1 2.3 49 27-79 22-70 (163)
43 6rxn_A Rubredoxin; electron tr 25.2 21 0.0007 22.9 0.6 13 38-50 3-15 (46)
44 2els_A Zinc finger protein 406 24.7 18 0.00063 20.1 0.3 27 35-61 5-32 (36)
45 2lvt_A Zinc finger and BTB dom 29.7 16 0.00056 19.0 0.0 23 40-62 3-26 (29)
46 2lvr_A Zinc finger and BTB dom 29.6 17 0.00057 19.0 0.0 24 39-62 3-27 (30)
47 2m0f_A Zinc finger and BTB dom 23.6 14 0.00047 19.1 -0.4 23 40-62 3-26 (29)
48 1rik_A E6APC1 peptide; E6-bind 23.6 20 0.00067 18.6 0.3 22 40-61 3-25 (29)
49 1srk_A Zinc finger protein ZFP 23.3 22 0.00077 19.5 0.5 27 36-62 4-31 (35)
50 2kn0_A FN14; tweak, TNF recept 23.1 13 0.00046 25.1 -0.6 23 25-47 14-38 (66)
51 3by4_A OTU1, ubiquitin thioest 22.8 18 0.00063 31.0 0.1 34 34-70 175-208 (212)
52 2crr_A Stromal membrane-associ 22.3 31 0.0011 27.6 1.3 50 25-78 27-76 (141)
53 2b0o_E UPLC1; arfgap, structur 22.2 40 0.0014 30.0 2.2 50 24-77 39-88 (301)
54 2ysl_A Tripartite motif-contai 22.2 46 0.0016 22.4 2.1 27 25-51 18-44 (73)
55 2elp_A Zinc finger protein 406 21.4 33 0.0011 19.1 1.1 28 35-62 5-34 (37)
56 3dwd_A ADP-ribosylation factor 21.2 52 0.0018 26.5 2.5 53 23-79 34-86 (147)
57 1t5q_A Gastric inhibitory poly 21.1 51 0.0017 19.1 1.7 11 275-285 18-28 (30)
58 4ic3_A E3 ubiquitin-protein li 20.7 13 0.00046 25.8 -1.0 26 26-51 23-49 (74)
59 2p57_A GTPase-activating prote 20.7 56 0.0019 26.2 2.6 50 24-77 34-83 (144)
60 1yk4_A Rubredoxin, RD; electro 20.7 34 0.0012 22.4 1.0 12 39-50 2-13 (52)
61 2olm_A Nucleoporin-like protei 20.3 55 0.0019 26.1 2.4 49 26-79 24-72 (140)
No 1
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=100.00 E-value=4.9e-45 Score=383.58 Aligned_cols=269 Identities=16% Similarity=0.222 Sum_probs=186.1
Q ss_pred CCCCCCcccccccc--cCCCcc-ccccccCCCCCeeEEeeeCceecccCC------chhHhhhhhhcCccEEEeecC---
Q psy9878 8 NRLCPYLDTINRQL--LDFDFE-KLCSVSLSRINVYACLVCGKYFQGRGT------NTFAYTHSVAESHHVFLNLHT--- 75 (338)
Q Consensus 8 ~~~c~~l~~~~~~~--~~~~~~-k~C~~c~~~~~lw~CL~Cg~~~CGr~~------~~Ha~~H~~~~~H~l~v~l~t--- 75 (338)
.+.|+|+..+.+.. ..+... ..|++|....++|+||+||+++|||+. ++||+.|+++++|+++|++.|
T Consensus 193 ~~~c~h~~~~~~~~~~~~~~~~~~~C~~c~~~~~lw~CL~Cg~vgC~r~~~~~~~~~~ha~~H~~~~~H~~~~~l~t~~~ 272 (854)
T 3ihp_A 193 RQVSKHAFSLKQLDNPARIPPCGWKCSKCDMRENLWLNLTDGSILCGRRYFDGSGGNNHAVEHYRETGYPLAVKLGTITP 272 (854)
T ss_dssp CCBCTTTTTCCCCSSCCCCCSSCCCCSSSCCCSSEEEETTTCCEEECCBC-CCCBCCSHHHHHHHHHCCCEEEETTCCBT
T ss_pred CCCCcCccccccccccccCCCCCCcCcCcCCcCceEEEecCCCccccccccCCCCCchHHHHHHhhcCCcEEEEcCCcCC
Confidence 36799998665432 112222 249999999999999999999999865 899999999999999999999
Q ss_pred --CeEEEecCCeEEecccCCccccccchhHHHHHhhhccccccceeeeecccccchhhhccCcccCCCChhhhhhhcCCC
Q psy9878 76 --LKFYCLPDNYEIVGTVAGPVVNRLCPYLDTINRQLLDFDFEKLCSVSLSRINVYACLVCGKYFQDSSLDDIKYVLNPT 153 (338)
Q Consensus 76 --~~v~Cy~Cd~~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 153 (338)
++||||+||++|.++ .+ .+++..+ ++.+.. ...++++..++....++.
T Consensus 273 ~~~~~~cy~~~~~v~~~-----------~l---~~~l~~~------gi~~~~----------~~kt~k~~~el~~~~n~~ 322 (854)
T 3ihp_A 273 DGADVYSYDEDDMVLDP-----------SL---AEHLSHF------GIDMLK----------MQKTDKTMTELEIDMNQR 322 (854)
T ss_dssp TBCCEEETTTTEECBCT-----------TH---HHHHHHT------TCCC------------------------------
T ss_pred CCCeEEEccCCCeeeCc-----------cH---HHHHHHh------Cccccc----------ccccchhhhhhhhhhccc
Confidence 999999999999753 12 2222222 111100 001133333333333444
Q ss_pred C-ChHHhhhcCcccccccccCCCcccCCccccccCCChhHHHHHHHHHhcChHHHHHHhchhhhhccCCCCCCChhHHHH
Q psy9878 154 F-TTDQIKQLDLSDKMSRAIDGTLYLPGIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQ 232 (338)
Q Consensus 154 ~-~~~~i~~~~~~~~~~~~~~~~~~~~g~~GL~NlGNTCy~NsvLQ~L~~~~~~r~~ll~~~~~~~~~~~~~~~~~~l~~ 232 (338)
| ....+..- ... -...+.+|++||.|+|||||||||||+|+++|+||++|+...+.... ..+.....++.+
T Consensus 323 ~g~~~~~~~~------g~~-l~p~~~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~-~~~~~~~~~l~~ 394 (854)
T 3ihp_A 323 IGEWELIQES------GVP-LKPLFGPGYTGIRNLGNSCYLNSVVQVLFSIPDFQRKYVDKLEKIFQ-NAPTDPTQDFST 394 (854)
T ss_dssp ----------------------CCCSTTCCCBCCCSSCHHHHHHHHHHTTSHHHHHHHTTTHHHHHH-HCCSCGGGCHHH
T ss_pred cchhhhhccc------Ccc-cccccCCCccceEecCCceehhHHHHHHhCcHHHHHHHHhhhhhhhc-cccCCccccHHH
Confidence 4 21111100 000 12467899999999999999999999999999999999864432110 112234578999
Q ss_pred HHHHHHHHHhCCC------------------CCCCccCHHHHHHHHHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhccc
Q psy9878 233 RFGELMRKLWNPR------------------NFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGT 294 (338)
Q Consensus 233 ~l~~l~~~l~~~~------------------~~~~~isP~~l~~~l~~~~~~~F~~~~QqDA~Efl~~lLd~L~~e~~~~ 294 (338)
+|++|+..||++. ....+++|..|+..++.. ++.|.+++||||||||++|||.|++++..
T Consensus 395 ~l~~L~~~L~s~~~s~~~~~~~~~~~~~~~~~~~~~isP~~f~~~l~~~-~~~F~~~~QQDA~EFl~~LLd~L~~el~~- 472 (854)
T 3ihp_A 395 QVAKLGHGLLSGEYSKPVPESGDGERVPEQKEVQDGIAPRMFKALIGKG-HPEFSTNRQQDAQEFFLHLINMVERNCRS- 472 (854)
T ss_dssp HHHHHHHHHHSCC---------------------CCBCCHHHHHHHTTT-CTTTTSSSCCBHHHHHHHHHHHHHHTCTT-
T ss_pred HHHHHHHHHhccccccccccccccccccccccCCCccChHHHHHHHhhh-ccccccccccCHHHHHHHHHHHHHHHhcc-
Confidence 9999999999754 235689999999999987 89999999999999999999999998753
Q ss_pred CCCccccccccceeEEEEEEEeCCCC
Q psy9878 295 KKKDSSIVYKTFLGSMKVKTRKIPPV 320 (338)
Q Consensus 295 ~~~~~~ii~~iF~G~l~s~t~~~~~~ 320 (338)
.++|.++|+|++++++......
T Consensus 473 ----~s~i~~lF~G~l~s~i~C~~C~ 494 (854)
T 3ihp_A 473 ----SENPNEVFRFLVEEKIKCLATE 494 (854)
T ss_dssp ----SCCGGGGTCEEEEEEEEETTTT
T ss_pred ----cCCchhhcCceEEEEEEecCCC
Confidence 3679999999999987765443
No 2
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=100.00 E-value=9.7e-45 Score=360.28 Aligned_cols=225 Identities=18% Similarity=0.206 Sum_probs=169.4
Q ss_pred ccccCCC--CCeeEEeeeCceecccCCchhHhhhhhhcCccEEEeecCCeEEEecCCeEEecccCCccccccchhHHHHH
Q psy9878 30 CSVSLSR--INVYACLVCGKYFQGRGTNTFAYTHSVAESHHVFLNLHTLKFYCLPDNYEIVGTVAGPVVNRLCPYLDTIN 107 (338)
Q Consensus 30 C~~c~~~--~~lw~CL~Cg~~~CGr~~~~Ha~~H~~~~~H~l~v~l~t~~v~Cy~Cd~~v~~~~~~~~~~~~~~~~~~i~ 107 (338)
|+.|... .++|+||+||.++||+ ++||+.|+.+++|+++|++.++++|||+|+++|+++ +.++
T Consensus 51 C~~c~~~~~~~~~~cl~cg~~~c~~--~~h~~~H~~~~~h~~~~~~~~~~~~c~~~~~~v~d~-------------~l~~ 115 (476)
T 3mhs_A 51 CGTCHEINSGATFMCLQCGFCGCWN--HSHFLSHSKQIGHIFGINSNNGLLFCFKCEDYIGNI-------------DLIN 115 (476)
T ss_dssp CTTTCCBCSSSEEEESSSSCEEETT--TTHHHHHHHHHCCCEEEETTTCCEEETTTTEEECSC-------------HHHH
T ss_pred cccccCCCCCCceEeCCCCCCccCC--chHHHHHhcccCCcEEEECCCCcEEeCCCCCCcccH-------------HHHH
Confidence 9999876 7999999999999986 899999999999999999999999999999999853 0111
Q ss_pred hhhccccccceeeeecccccchhhhccCcccCCCChhhhhhhcCCCCChHHhhhcCcccccccccCCCcccCCccccccC
Q psy9878 108 RQLLDFDFEKLCSVSLSRINVYACLVCGKYFQDSSLDDIKYVLNPTFTTDQIKQLDLSDKMSRAIDGTLYLPGIVGLNNI 187 (338)
Q Consensus 108 ~~~~~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~GL~Nl 187 (338)
.. +.|.+....... .......+.+|++||.|+
T Consensus 116 ~~----------------------------------------~~~~~~~~~~~~--------~~~~~~~~~~G~~GL~Nl 147 (476)
T 3mhs_A 116 DA----------------------------------------ILAKYWDDVCTK--------TMVPSMERRDGLSGLINM 147 (476)
T ss_dssp TG----------------------------------------GGGGGHHHHHHH--------EECCCGGGTTCCCCCCCS
T ss_pred HH----------------------------------------Hhhhccchhhhc--------ccCCCccCCCCCCCCCcC
Confidence 00 011111111111 011223456899999999
Q ss_pred CChhHHHHHHHHHhcChHHHHHHhchhhhhccCCCCCCChhHHHHHHHHHHHHHhCCCCC-------CCccCHHHH---H
Q psy9878 188 KANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNF-------KSHVSPHEM---L 257 (338)
Q Consensus 188 GNTCy~NsvLQ~L~~~~~~r~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~-------~~~isP~~l---~ 257 (338)
|||||||||||+|+++|+||++++...+....... ....++.++|..++.++|+.... ...+.|..+ +
T Consensus 148 GNTCYmNSvLQ~L~~~p~fr~~~l~~~~~~~~~~~--~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l 225 (476)
T 3mhs_A 148 GSTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVR--SPDKCFSCALDKIVHELYGALNTKQASSSSTSTNRQTGFIYLL 225 (476)
T ss_dssp SSTHHHHHHHHHHHTCHHHHHHHHTTHHHHHCSSC--CTTTCHHHHHHHHHHHHHSCCCC--------CCCSCHHHHHHH
T ss_pred CccHHHHHHHHHHhCCHHHHHHHHhcchhhhccCC--CcccchHHHHHHHHHHHhhcccccccccccccccCcchHHHHH
Confidence 99999999999999999999999976654333221 23467999999999999985421 124556554 4
Q ss_pred HHHHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhcccC-----------CCccccccccceeEEEEEEEeCCCC
Q psy9878 258 QAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTK-----------KKDSSIVYKTFLGSMKVKTRKIPPV 320 (338)
Q Consensus 258 ~~l~~~~~~~F~~~~QqDA~Efl~~lLd~L~~e~~~~~-----------~~~~~ii~~iF~G~l~s~t~~~~~~ 320 (338)
..+|.. .+.|.+++||||||||++|||.|++++.... +...++|+++|+|++++++......
T Consensus 226 ~~~~~~-~~~f~~~~QqDA~EFl~~LLd~L~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~G~l~~~~~C~~C~ 298 (476)
T 3mhs_A 226 TCAWKI-NQNLAGYSQQDAHEFWQFIINQIHQSYVLDLPNAKEVSRANNKQCECIVHTVFEGSLESSIVCPGCQ 298 (476)
T ss_dssp HHHHHH-CGGGSSSSCEEHHHHHHHHHHHHHHHHHHHCCC-------CCCSCCSHHHHHSCEEEEEEEECTTTC
T ss_pred HHHHHh-ccccCCCCCcCHHHHHHHHHHHHHHHHhhcccccccccccccccCCCcceeecceEEEEEEEECCCC
Confidence 455576 8999999999999999999999999875322 2356899999999999887655443
No 3
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=99.96 E-value=9e-29 Score=237.40 Aligned_cols=139 Identities=30% Similarity=0.519 Sum_probs=116.0
Q ss_pred cccCCccccccCCChhHHHHHHHHHhcChHHHHHHhchhhhhccC-CCCCCChhHHHHHHHHHHHHHhCCCCCCCccCHH
Q psy9878 176 LYLPGIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVK-RPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPH 254 (338)
Q Consensus 176 ~~~~g~~GL~NlGNTCy~NsvLQ~L~~~~~~r~~ll~~~~~~~~~-~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~isP~ 254 (338)
.+.+|++||.|+|||||||||||+|+|+|+|+++|+...+...+. ..+.....+++.+|+.|+..||++. ..+++|.
T Consensus 3 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~--~~~i~P~ 80 (367)
T 2y6e_A 3 HIQPGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGR--DAHVAPR 80 (367)
T ss_dssp -CCTTCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCTTSCTTHHHHHHHHHHHHHTSSS--CSEECCH
T ss_pred CCCCCCcCCccCCcchHHHHHHHHHHCCHHHHHHHHcCchhhhccccCCCCcchHHHHHHHHHHHHHHcCC--CCCcCHH
Confidence 456899999999999999999999999999999999865443332 1122234679999999999999987 5799999
Q ss_pred HHHHHHHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhcccCC---------------------------Cccccccccce
Q psy9878 255 EMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKK---------------------------KDSSIVYKTFL 307 (338)
Q Consensus 255 ~l~~~l~~~~~~~F~~~~QqDA~Efl~~lLd~L~~e~~~~~~---------------------------~~~~ii~~iF~ 307 (338)
.|+..++.. .+.|.+++||||||||++|||.||+++....+ ...++|.++|+
T Consensus 81 ~~~~~l~~~-~~~f~~~~QqDA~Efl~~LLd~L~~~l~~~~~~~~~~~~~~~g~~~~~~a~~~w~~~~~~~~s~i~~~F~ 159 (367)
T 2y6e_A 81 MFKTQVGRF-APQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENHRLRNDSVIVDTFH 159 (367)
T ss_dssp HHHHHHHHH-CGGGCSSSCCCHHHHHHHHHHHHHHHTCSCSSCCCCCCCCCCSCCHHHHHHHHHHHHHHHCCSHHHHHHC
T ss_pred HHHHHHHHh-hhhcCCCCCCCHHHHHHHHHHHHHHHHHhhccCCccccccccCCchhHHHHHHHHHHHHhcCCccccccC
Confidence 999999987 89999999999999999999999999865432 13578999999
Q ss_pred eEEEEEEEeC
Q psy9878 308 GSMKVKTRKI 317 (338)
Q Consensus 308 G~l~s~t~~~ 317 (338)
|++++++...
T Consensus 160 G~l~s~~~C~ 169 (367)
T 2y6e_A 160 GLFKSTLVCP 169 (367)
T ss_dssp EEEEEEEECT
T ss_pred cEEeeeEEeC
Confidence 9999876543
No 4
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=99.95 E-value=1.8e-28 Score=238.08 Aligned_cols=164 Identities=25% Similarity=0.369 Sum_probs=118.6
Q ss_pred CCChHHhhhcCcccccccccCCCcccCCccccccCCChhHHHHHHHHHhcChHHHHHHhchhhhhccCCC-CCCChhHHH
Q psy9878 153 TFTTDQIKQLDLSDKMSRAIDGTLYLPGIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRP-PGDSSFLLV 231 (338)
Q Consensus 153 ~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~GL~NlGNTCy~NsvLQ~L~~~~~~r~~ll~~~~~~~~~~~-~~~~~~~l~ 231 (338)
.|++.+|..++.......+.....+.+|++||.|+|||||||||||+|+++|+||++|+...+...+... +......++
T Consensus 34 ~~~~~~i~~l~~~~~~~l~p~~~~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~l~ 113 (396)
T 2gfo_A 34 CYPKAEISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVA 113 (396)
T ss_dssp --------------CGGGCCEECCSSTTCCEECCSSSCHHHHHHHHHHHTCHHHHHHHHTTTHHHHCCTTCTTSCTTHHH
T ss_pred CccccccccCccccccccCCccCCCCCCcccccccCCchhHhHHHHHhhCCHHHHHHHHcCcchhhhcccCCCCcccHHH
Confidence 4666666666543211111111234689999999999999999999999999999999986544333211 111236789
Q ss_pred HHHHHHHHHHhCCCCCCCccCHHHHHHHHHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhcccCC---------------
Q psy9878 232 QRFGELMRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKK--------------- 296 (338)
Q Consensus 232 ~~l~~l~~~l~~~~~~~~~isP~~l~~~l~~~~~~~F~~~~QqDA~Efl~~lLd~L~~e~~~~~~--------------- 296 (338)
.+|..+++.||++. ..+++|..|+..++.. .+.|.+++||||||||++|||.||+++....+
T Consensus 114 ~~~~~l~~~l~~~~--~~~i~P~~f~~~l~~~-~~~f~~~~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~ 190 (396)
T 2gfo_A 114 EEFGIIMKALWTGQ--YRYISPKDFKITIGKI-NDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDF 190 (396)
T ss_dssp HHHHHHHHHHHHSC--EEEECCHHHHHHHHHH-CGGGSSSSCCCHHHHHHHHHHHHHHHHCCCCC---------TTSCHH
T ss_pred HHHHHHHHHHHcCC--CceECHHHHHHHHHHh-chhhcCCCCCChHHHHHHHHHHHHHHHhhhccccccccccccccchh
Confidence 99999999999887 5789999999999987 89999999999999999999999999865421
Q ss_pred ------------CccccccccceeEEEEEEEeCCC
Q psy9878 297 ------------KDSSIVYKTFLGSMKVKTRKIPP 319 (338)
Q Consensus 297 ------------~~~~ii~~iF~G~l~s~t~~~~~ 319 (338)
...++|+++|+|++++++.....
T Consensus 191 ~~a~~~w~~~~~~~~s~I~~lF~G~l~s~i~C~~C 225 (396)
T 2gfo_A 191 KAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTC 225 (396)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHCEEEEEEEEETTT
T ss_pred hHHHHHHHHhhhccCCccchhhCcEEEEEEEeCCC
Confidence 23578999999999998766544
No 5
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=99.95 E-value=3.3e-27 Score=223.78 Aligned_cols=139 Identities=26% Similarity=0.463 Sum_probs=114.9
Q ss_pred cccCCccccccCCChhHHHHHHHHHhcChHHHHHHhchhhhhccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCccCHHH
Q psy9878 176 LYLPGIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHE 255 (338)
Q Consensus 176 ~~~~g~~GL~NlGNTCy~NsvLQ~L~~~~~~r~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~isP~~ 255 (338)
...+|++||.|+|||||||||||+|+++|+||++++...+....... .....++.++|..|++.||.... ...++|..
T Consensus 4 k~~~g~~GL~N~GNtCY~NsvLQ~L~~~~~~r~~~l~~~~~~~~~~~-~~~~~~l~~~l~~l~~~l~~~~~-~~~~~p~~ 81 (348)
T 3nhe_A 4 KSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHG-SNAHTALVEEFAKLIQTIWTSSP-NDVVSPSE 81 (348)
T ss_dssp --CCSCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTGGGGTSCSS-CCTTHHHHHHHHHHHHHHTTCCT-TCEECCHH
T ss_pred CCCCCCCCCCcCCccHHHHHHHHHHhcCHHHHHHHhcchhhHhhccC-CCcccHHHHHHHHHHHHHHcCCC-CCccCHHH
Confidence 34689999999999999999999999999999999986554333221 22357899999999999995332 67999999
Q ss_pred HHHHHHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhcccCC---------------------------Ccccccccccee
Q psy9878 256 MLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKK---------------------------KDSSIVYKTFLG 308 (338)
Q Consensus 256 l~~~l~~~~~~~F~~~~QqDA~Efl~~lLd~L~~e~~~~~~---------------------------~~~~ii~~iF~G 308 (338)
|+..++.. .+.|.+++||||||||++|||.|++++..... ...++|+++|+|
T Consensus 82 ~~~~l~~~-~~~f~~~~QqDa~Efl~~lLd~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g 160 (348)
T 3nhe_A 82 FKTQIQRY-APRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVG 160 (348)
T ss_dssp HHHHHHHH-SGGGSSSCCBCHHHHHHHHHHHHHHHHCSCSSCCCCCCCCCTTSCHHHHHHHHHHHHHTTCCCHHHHHHCE
T ss_pred HHHHHHHh-hhhhCCCCccCHHHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHhhcCCccccccce
Confidence 99999998 89999999999999999999999999865431 234779999999
Q ss_pred EEEEEEEeC
Q psy9878 309 SMKVKTRKI 317 (338)
Q Consensus 309 ~l~s~t~~~ 317 (338)
+++++....
T Consensus 161 ~~~~~~~C~ 169 (348)
T 3nhe_A 161 QLKSSLTCT 169 (348)
T ss_dssp EEEEEEEET
T ss_pred EEEEEEEcC
Confidence 999876643
No 6
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=99.94 E-value=8.8e-27 Score=221.39 Aligned_cols=134 Identities=27% Similarity=0.462 Sum_probs=108.9
Q ss_pred CccccccCCChhHHHHHHHHHhcChHHHHHHhchhhhhccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCccCHHHHHHH
Q psy9878 180 GIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQA 259 (338)
Q Consensus 180 g~~GL~NlGNTCy~NsvLQ~L~~~~~~r~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~isP~~l~~~ 259 (338)
|++||.|+|||||||||||+|+++|+||++++......... ......++..+|..|+..||.+.. ..+++|..|+..
T Consensus 2 G~~GL~N~GNtCY~NSvLQ~L~~~~~~~~~~l~~~~~~~~~--~~~~~~~l~~~l~~l~~~l~~~~~-~~~v~p~~~~~~ 78 (355)
T 3i3t_A 2 GHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVP--GGGRAQELTEAFADVIGALWHPDS-CEAVNPTRFRAV 78 (355)
T ss_dssp -CCCBCCCSSTHHHHHHHHHHHTCHHHHHHHHHTTHHHHC--------CHHHHHHHHHHHHTSSCSS-CCCBCCHHHHHH
T ss_pred CCcCcEECCcchHHHHHHHHHhCCHHHHHHHHhchHHHhcC--CCCchhHHHHHHHHHHHHHhcCCC-CCcccHHHHHHH
Confidence 78999999999999999999999999999999754433221 112245799999999999999764 368999999999
Q ss_pred HHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhcccCC------------------------------------------C
Q psy9878 260 VVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKK------------------------------------------K 297 (338)
Q Consensus 260 l~~~~~~~F~~~~QqDA~Efl~~lLd~L~~e~~~~~~------------------------------------------~ 297 (338)
++.. .+.|.+++||||||||++|||.||+++....+ .
T Consensus 79 l~~~-~~~f~~~~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (355)
T 3i3t_A 79 FQKY-VPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPILANGPVPSPPRRGGALLEEPELSDDDRANLMWKRYLER 157 (355)
T ss_dssp HHHH-CGGGCSSCCCBHHHHHHHHHHHHHHHHCCC----------------------------CCHHHHHHHHHHHHHHH
T ss_pred HHHh-ChhhCCCCccCHHHHHHHHHHHHHHHHhhhccCCCcccccCcccCccccccccccCCCCCHHHHHHHHHHHhhhc
Confidence 9987 89999999999999999999999999865432 1
Q ss_pred ccccccccceeEEEEEEEeC
Q psy9878 298 DSSIVYKTFLGSMKVKTRKI 317 (338)
Q Consensus 298 ~~~ii~~iF~G~l~s~t~~~ 317 (338)
..++|.++|+|+++++++..
T Consensus 158 ~~s~i~~~F~g~~~~~~~C~ 177 (355)
T 3i3t_A 158 EDSKIVDLFVGQLKSCLKCQ 177 (355)
T ss_dssp CCSHHHHHHCEEEEEEEEET
T ss_pred cCCcccccccEEEEeeEEeC
Confidence 34679999999999876543
No 7
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=99.93 E-value=3.2e-26 Score=222.01 Aligned_cols=140 Identities=19% Similarity=0.201 Sum_probs=113.1
Q ss_pred cCCccccccCCChhHHHHHHHHHhcChHHHHHHhchhhhhccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCccCHHHHH
Q psy9878 178 LPGIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEML 257 (338)
Q Consensus 178 ~~g~~GL~NlGNTCy~NsvLQ~L~~~~~~r~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~isP~~l~ 257 (338)
..+++||.|+|||||||||||+|+|+|+||++|+........ ........+++++|+.||..||.+. .+++|..|+
T Consensus 11 ~~~~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~l~~~~~~~~~-~~~~~~~~~l~~~l~~lf~~l~~~~---~~v~P~~~~ 86 (404)
T 2ayn_A 11 MELPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRA-SGEMASAQYITAALRDLFDSMDKTS---SSIPPIILL 86 (404)
T ss_dssp CCCCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTCCCCC-------CHHHHHHHHHHHHHHHHHHHC---SEECCHHHH
T ss_pred cCCCCCcccCCcccHHHHHHHHHHcCHHHHHHHHhccccccc-CCCCCcccHHHHHHHHHHHHHhcCC---CcCChHHHH
Confidence 357789999999999999999999999999999975432101 1111235789999999999999864 689999999
Q ss_pred HHHHhhcCCCCC------CCCCCCHHHHHHHHHHHHHHHhcccC-----------------CCccccccccceeEEEEEE
Q psy9878 258 QAVVLWSRKQFQ------FTEQSDPIDFLSWFLNTLHRALNGTK-----------------KKDSSIVYKTFLGSMKVKT 314 (338)
Q Consensus 258 ~~l~~~~~~~F~------~~~QqDA~Efl~~lLd~L~~e~~~~~-----------------~~~~~ii~~iF~G~l~s~t 314 (338)
..++.. .|.|+ +++||||||||++|||.|++++.... ....++|+++|+|++++++
T Consensus 87 ~~l~~~-~~~f~~~~~~~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~~e~~~~~~~~~~~~~~~s~i~~~F~G~l~s~i 165 (404)
T 2ayn_A 87 QFLHMA-FPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIEDDSVKETDSSSASAATPSKKKSLIDQFFGVEFETTM 165 (404)
T ss_dssp HHHHHH-CGGGGCBCTTSCBCCCCHHHHHHHHHHHHHTTSCCCCCC------------------CCHHHHHTCEEEEEEE
T ss_pred HHHHHh-CchhhccccCCCccccCHHHHHHHHHHHHHHHhccccCCcccccchhhhhhhhccccCchhhhhccEEEEEEE
Confidence 999987 88887 58999999999999999999886543 2345899999999999998
Q ss_pred EeCCCCCc
Q psy9878 315 RKIPPVEL 322 (338)
Q Consensus 315 ~~~~~~~~ 322 (338)
........
T Consensus 166 ~C~~C~~~ 173 (404)
T 2ayn_A 166 KCTESEEE 173 (404)
T ss_dssp EESSSCCC
T ss_pred EecCCCCc
Confidence 87665443
No 8
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=99.92 E-value=5.2e-25 Score=214.63 Aligned_cols=130 Identities=21% Similarity=0.243 Sum_probs=108.9
Q ss_pred cCCccccccCCChhHHHHHHHHHhcChHHHHHHhchhhhhccCCCCC---CChhHHHHHHHHHHHHHhCCCCCCCccCHH
Q psy9878 178 LPGIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPG---DSSFLLVQRFGELMRKLWNPRNFKSHVSPH 254 (338)
Q Consensus 178 ~~g~~GL~NlGNTCy~NsvLQ~L~~~~~~r~~ll~~~~~~~~~~~~~---~~~~~l~~~l~~l~~~l~~~~~~~~~isP~ 254 (338)
..+++||.|+|||||||||||+|+++|+||++|+..........+.+ ....++.++|+.||..|+.+. ..+++|.
T Consensus 21 ~~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~--~~~v~p~ 98 (415)
T 1vjv_A 21 AQLPVGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMKRCFENLQNKS--FKSVLPV 98 (415)
T ss_dssp CCCCCEECCCSSCHHHHHHHHHHHHSHHHHHHHHTCCGGGCCSCTTSTTHHHHHHHHHHHHHHHHHHHCC---CCEECCH
T ss_pred CCCCCCCEeCCcccHHHHHHHHHHcCHHHHHHHHhcccccccCCcccccccchhHHHHHHHHHHHHHhcCC--CCccCHH
Confidence 46789999999999999999999999999999997654332211110 014689999999999999876 5799999
Q ss_pred HHHHHHHhhcCCCCC-------CCCCCCHHHHHHHHHHHHHHHhcccCCCccccccccceeEEEEEEEeC
Q psy9878 255 EMLQAVVLWSRKQFQ-------FTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFLGSMKVKTRKI 317 (338)
Q Consensus 255 ~l~~~l~~~~~~~F~-------~~~QqDA~Efl~~lLd~L~~e~~~~~~~~~~ii~~iF~G~l~s~t~~~ 317 (338)
.|+..++.. .|.|. +++||||||||++|||.|++++.. ++|+++|+ ++++++...
T Consensus 99 ~~~~~l~~~-~~~f~~~~~~~~~~~QqDa~Efl~~lLd~L~~~~~~------~~i~~~F~-~~~~~~~C~ 160 (415)
T 1vjv_A 99 VLLNTLRKC-YPQFAERDSQGGFYKQQDAEELFTQLFHSMSIVFGD------KFSEDFRI-QFKTTIKDT 160 (415)
T ss_dssp HHHHHHHHH-CGGGGCBC----CBCCCCHHHHHHHHHHHHHHHHTH------HHHTTTCE-EEEEEEEET
T ss_pred HHHHHHHHh-CchhhccccCCCCccccCHHHHHHHHHHHHHHHhcc------chHHHHHH-hheEEEEEC
Confidence 999999997 89998 899999999999999999999854 78999999 999876543
No 9
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=99.92 E-value=8.1e-25 Score=209.16 Aligned_cols=127 Identities=21% Similarity=0.215 Sum_probs=105.7
Q ss_pred cCCccccccCCChhHHHHHHHHHhcChHHHHHHhchhhhhccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCccCHHHHH
Q psy9878 178 LPGIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEML 257 (338)
Q Consensus 178 ~~g~~GL~NlGNTCy~NsvLQ~L~~~~~~r~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~isP~~l~ 257 (338)
.+|++||.|+|||||||||||+|+++|+||++++...... .+...++.++|+.+|..|+.+. .+++|..|+
T Consensus 3 ~~g~~GL~NlGnTCYmNSvLQ~L~~~~~~r~~~~~~~~~~------~~~~~~~~~~l~~lf~~l~~~~---~~~~~~~l~ 73 (353)
T 1nb8_A 3 HTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEG------DDSSKSVPLALQRVFYELQHSD---KPVGTKKLT 73 (353)
T ss_dssp CSSCCCBCCCSTTTTHHHHHHHHHTCHHHHHHHHTSCCTT------SCTTTCHHHHHHHHHHHHHHCS---SCBCCHHHH
T ss_pred CCCCCCcccCchhhHHHHHHHHHHCCHHHHHHHHhCCCCC------CcccccHHHHHHHHHHHHhhcC---CCCCCHHHH
Confidence 4789999999999999999999999999999997643211 1123568999999999999865 579999999
Q ss_pred HHHHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhcccCCCccccccccceeEEEEEEEeCC
Q psy9878 258 QAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFLGSMKVKTRKIP 318 (338)
Q Consensus 258 ~~l~~~~~~~F~~~~QqDA~Efl~~lLd~L~~e~~~~~~~~~~ii~~iF~G~l~s~t~~~~ 318 (338)
..+. .+.|.+++||||||||++|||.|++++.+. ...++|+++|+|++++++....
T Consensus 74 ~~~~---~~~~~~~~QqDA~EFl~~LLd~L~~~~~~~--~~~s~i~~~F~g~~~~~i~C~~ 129 (353)
T 1nb8_A 74 KSFG---WETLDSFMQHDVQELCRVLLDNVENKMKGT--CVEGTIPKLFRGKMVSYIQCKE 129 (353)
T ss_dssp HHHT---CCBTTTTTTSCHHHHHHHHHHHHHHHTTTS--TTTTHHHHHHCEEEEEEEEESS
T ss_pred hhcC---CCCCCcccchhHHHHHHHHHHHHHHHhcCC--CccchhhhhceeEEEEEEEecc
Confidence 8873 478999999999999999999999988643 3457899999999998766543
No 10
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=99.90 E-value=3.2e-24 Score=169.96 Aligned_cols=84 Identities=19% Similarity=0.278 Sum_probs=77.4
Q ss_pred CCCCCCCCcccccccc-cCCCccccccccCCCCCeeEEeeeCceecccCCchhHhhhhhhcCccEEEeecCCeEEEecCC
Q psy9878 6 VVNRLCPYLDTINRQL-LDFDFEKLCSVSLSRINVYACLVCGKYFQGRGTNTFAYTHSVAESHHVFLNLHTLKFYCLPDN 84 (338)
Q Consensus 6 ~~~~~c~~l~~~~~~~-~~~~~~k~C~~c~~~~~lw~CL~Cg~~~CGr~~~~Ha~~H~~~~~H~l~v~l~t~~v~Cy~Cd 84 (338)
...+.||||.+|++.. .++|+.+.|++|.+..++|+||+||+++|||+.++||+.||++++|+++|++.++.||||+||
T Consensus 2 ~~~~~C~Hl~~l~~~~~~~~~~~~~C~~C~~~~~~W~CL~CG~vgCgr~~~~HA~~H~~~t~H~~~~~l~~~~vwCy~cd 81 (109)
T 3c5k_A 2 SPLPWCPHLVAVCPIPAAGLDVTQPCGDCGTIQENWVCLSCYQVYCGRYINGHMLQHHGNSGHPLVLSYIDLSAWCYYCQ 81 (109)
T ss_dssp CCBSCCTTGGGCCCCCTTCCCTTCCCTTTCCCSSEEEETTTCCEEECTTTTCHHHHHHHHHCCCEEEETTTCCEEETTTT
T ss_pred CCCCCCcCcccccccCCCCCCcCCcCccccCCCCeeeeeecCccccCCCcChHHHHHhcccCCCEEEECCCCCEEECCCC
Confidence 4567899999998754 367888889999999999999999999999999999999999999999999999999999999
Q ss_pred eEEec
Q psy9878 85 YEIVG 89 (338)
Q Consensus 85 ~~v~~ 89 (338)
++|.+
T Consensus 82 ~~V~~ 86 (109)
T 3c5k_A 82 AYVHH 86 (109)
T ss_dssp EEBCC
T ss_pred CEEec
Confidence 99974
No 11
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=99.89 E-value=3.8e-23 Score=207.41 Aligned_cols=129 Identities=21% Similarity=0.201 Sum_probs=104.6
Q ss_pred cccCCccccccCCChhHHHHHHHHHhcChHHHHHHhchhhhhccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCccCHHH
Q psy9878 176 LYLPGIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHE 255 (338)
Q Consensus 176 ~~~~g~~GL~NlGNTCy~NsvLQ~L~~~~~~r~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~isP~~ 255 (338)
...+|++||.|+||||||||+||+|+++|+||++++...... .....++.++|+.||..|+.+. .+++|..
T Consensus 170 ~~~~g~~GL~NlGnTCYmNSvLQ~L~~~~~fr~~~~~~~~~~------~~~~~~~~~~l~~lf~~l~~~~---~~~~~~~ 240 (522)
T 2f1z_A 170 KKHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEG------DDSSKSVPLALQRVFYELQHSD---KPVGTKK 240 (522)
T ss_dssp TTTTSCCCBCCC--CTTHHHHHHHHHTCHHHHHHHHTCCCCS------SCTTTCHHHHHHHHHHHHHHCS---SCBCCTT
T ss_pred cccCCccceecCcccHHHHHHHHHHhccHHHHHHHhhccccC------CcccchHHHHHHHHHHHHhcCC---CccCcHH
Confidence 346899999999999999999999999999999987543110 1123568899999999999865 5789999
Q ss_pred HHHHHHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhcccCCCccccccccceeEEEEEEEeCC
Q psy9878 256 MLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFLGSMKVKTRKIP 318 (338)
Q Consensus 256 l~~~l~~~~~~~F~~~~QqDA~Efl~~lLd~L~~e~~~~~~~~~~ii~~iF~G~l~s~t~~~~ 318 (338)
|+..+. .+.|.+++||||||||++|||.|++++.+. ...++|+++|+|++++++....
T Consensus 241 l~~~~~---~~~~~~~~QqDa~Efl~~LLd~L~~~l~~~--~~~s~i~~lF~G~~~s~i~C~~ 298 (522)
T 2f1z_A 241 LTKSFG---WETLDSFMQHDVQELCRVLLDNVENKMKGT--CVEGTIPKLFRGKMVSYIQCKE 298 (522)
T ss_dssp HHHHTC---CCTTTSSTTSCHHHHHHHHHHHHHHHHTTS--TTTTHHHHHHCEEEEEEECCSS
T ss_pred HHhhcC---CccCCCcccccHHHHHHHHHHHHHhhccCC--ccccchhhheeEEEEEEEEcCC
Confidence 988762 478999999999999999999999998653 3457899999999999776543
No 12
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=99.86 E-value=8.4e-23 Score=158.90 Aligned_cols=81 Identities=26% Similarity=0.402 Sum_probs=72.1
Q ss_pred CCCCCCcccccccc---cCCCccccccccC-CCCCeeEEee--eCceecccCCchhHhhhhhhcCccEEEeecCCeEEEe
Q psy9878 8 NRLCPYLDTINRQL---LDFDFEKLCSVSL-SRINVYACLV--CGKYFQGRGTNTFAYTHSVAESHHVFLNLHTLKFYCL 81 (338)
Q Consensus 8 ~~~c~~l~~~~~~~---~~~~~~k~C~~c~-~~~~lw~CL~--Cg~~~CGr~~~~Ha~~H~~~~~H~l~v~l~t~~v~Cy 81 (338)
.+.||||.++++.. +.++....|++|. ...|+|+||+ ||+++|||+.++||+.||++++|+|+|++.+++||||
T Consensus 3 ~~~C~Hl~~~~~~~~~~~~~~~~~~C~~C~~~~~~lw~CL~~~Cg~vgCgr~~~~Ha~~H~~~t~H~~~~~l~~~~vwCy 82 (97)
T 2uzg_A 3 RNHCPHLDSVGEITKEDLIQKSLGTCQDCKVQGPNLWACLENRCSYVGCGESQVDHSTIHSQETKHYLTVNLTTLRVWCY 82 (97)
T ss_dssp CCSCHHHHHSCCCCHHHHHHHTTTCCSSSCCCCSSCEEECCTTCCCEECCTTTTCHHHHHHHHTTCCEEEETTTTEEEET
T ss_pred CCCCcCcchhcccCcccccCCCCCcCcCcCCCCCCceeeecccCCCcccCCCcChHHHHHhhhcCCcEEEECCCCCEEEC
Confidence 46899999877543 2345566799999 7889999999 9999999999999999999999999999999999999
Q ss_pred cCCeEEe
Q psy9878 82 PDNYEIV 88 (338)
Q Consensus 82 ~Cd~~v~ 88 (338)
+||++|+
T Consensus 83 ~cdd~V~ 89 (97)
T 2uzg_A 83 ACSKEVF 89 (97)
T ss_dssp TTTEEEC
T ss_pred CCCcEee
Confidence 9999995
No 13
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Probab=99.85 E-value=8.5e-22 Score=160.41 Aligned_cols=80 Identities=19% Similarity=0.169 Sum_probs=70.7
Q ss_pred CCCCCccccccc----ccCCCccccccccCCCCCeeEEeeeCceecccCC------chhHhhhhhhcCccEEEeecC---
Q psy9878 9 RLCPYLDTINRQ----LLDFDFEKLCSVSLSRINVYACLVCGKYFQGRGT------NTFAYTHSVAESHHVFLNLHT--- 75 (338)
Q Consensus 9 ~~c~~l~~~~~~----~~~~~~~k~C~~c~~~~~lw~CL~Cg~~~CGr~~------~~Ha~~H~~~~~H~l~v~l~t--- 75 (338)
+.|||+..+++. .++++..+ |++|....+||+||+||+++|||+. ++||+.||++++|+|+|++.|
T Consensus 13 ~~C~h~~~l~q~~~~~~~~~~~~~-C~~C~~~~~LwlCL~CG~vgCgr~~~~g~g~~~HA~~H~~~t~H~l~v~l~t~~~ 91 (129)
T 2g45_A 13 QVSKHAFSLKQLDNPARIPPCGWK-CSKCDMRENLWLNLTDGSILCGRRYFDGSGGNNHAVEHYRETGYPLAVKLGTITP 91 (129)
T ss_dssp EECTTTTTCCCCSSCCCCCCCBCC-CSSSSCCSSEEEETTTCCEEECCBCTTSCBCCSHHHHHHHHHCCCEEEETTCCBT
T ss_pred CCCCCcCcccccccccccCCCCCc-CccccCcCceEEeccCCccccCccccCCCCcCcHHHHHhhhcCCCEEEECCCCCC
Confidence 569999987764 23445444 9999999999999999999999986 999999999999999999999
Q ss_pred --CeEEEecCCeEEec
Q psy9878 76 --LKFYCLPDNYEIVG 89 (338)
Q Consensus 76 --~~v~Cy~Cd~~v~~ 89 (338)
++||||+||++|.+
T Consensus 92 ~~~~vwcY~cd~~V~d 107 (129)
T 2g45_A 92 DGADVYSYDEDDMVLD 107 (129)
T ss_dssp TBCCEEETTTTEEEEC
T ss_pred CCCeEEECCCCCEeEC
Confidence 69999999999985
No 14
>2i50_A Ubiquitin carboxyl-terminal hydrolase 16; alpha/beta zinc-finger, ring-finger, ZNF-UBP, metalloprotein, ubiquitin-binding protein, USP; NMR {Homo sapiens}
Probab=99.81 E-value=1.4e-20 Score=153.00 Aligned_cols=100 Identities=22% Similarity=0.334 Sum_probs=75.7
Q ss_pred CCCCCCCcccccc-----cccCCCccccccccCC--------------CCCeeEEeeeCceecccC-CchhHhhhhhh--
Q psy9878 7 VNRLCPYLDTINR-----QLLDFDFEKLCSVSLS--------------RINVYACLVCGKYFQGRG-TNTFAYTHSVA-- 64 (338)
Q Consensus 7 ~~~~c~~l~~~~~-----~~~~~~~~k~C~~c~~--------------~~~lw~CL~Cg~~~CGr~-~~~Ha~~H~~~-- 64 (338)
+...|||+..+.. ..+.-.....|.+|.. ..++|+||+||+++|||+ .++||+.||++
T Consensus 3 ~~~~C~H~~~~~~l~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~Lw~CL~CG~vgCgr~~~~~Ha~~H~~~~~ 82 (126)
T 2i50_A 3 HMPVCRHIRKGLEQGNLKKALVNVEWNICQDCKTDNKVKDKAEEETEEKPSVWLCLKCGHQGCGRNSQEQHALKHYLTPR 82 (126)
T ss_dssp --CCCSCHHHHCCHHHHHHHHSSCCSSSCHHHHTCTTSSCSSCTTTCCCCCEEEETTTCCEEECTTSSSCHHHHHHHSCC
T ss_pred CCCCCcChhhccccccccccccCCCCCcCccccccccccccccccccccccceeeeeCCccccCCCCcchHHHHHHhCcC
Confidence 3578999984431 1111111123888875 789999999999999998 68999999998
Q ss_pred -cCccEEEeecCCeEEEecCCeEEecccCCccccccchhHHHHHhhh
Q psy9878 65 -ESHHVFLNLHTLKFYCLPDNYEIVGTVAGPVVNRLCPYLDTINRQL 110 (338)
Q Consensus 65 -~~H~l~v~l~t~~v~Cy~Cd~~v~~~~~~~~~~~~~~~~~~i~~~~ 110 (338)
++|||+|++.++.||||.||++|.++ ..+.+.+.++++++++
T Consensus 83 ~t~H~l~~~l~t~~vwCY~cd~~V~~~----~~~~l~~~v~~~~k~~ 125 (126)
T 2i50_A 83 SEPHCLVLSLDNWSVWCYVCDNEVQYC----SSNQLGQVVDYVRKQA 125 (126)
T ss_dssp SSCCCEEEETTTCCEEETTTTEEECCC----TTSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCeEEeCCCCcEEEcC----cchhHHHHHHHHHHhc
Confidence 79999999999999999999999853 3455666777776653
No 15
>2ida_A Hypothetical protein; zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: g.44.1.5
Probab=99.81 E-value=2.8e-20 Score=144.56 Aligned_cols=79 Identities=16% Similarity=0.133 Sum_probs=66.6
Q ss_pred CCCCCcccccccccCCCccccccccCCCC----CeeEEeeeCceecccC-CchhHhhhhhhcCccEEEeec--CCeEEEe
Q psy9878 9 RLCPYLDTINRQLLDFDFEKLCSVSLSRI----NVYACLVCGKYFQGRG-TNTFAYTHSVAESHHVFLNLH--TLKFYCL 81 (338)
Q Consensus 9 ~~c~~l~~~~~~~~~~~~~k~C~~c~~~~----~lw~CL~Cg~~~CGr~-~~~Ha~~H~~~~~H~l~v~l~--t~~v~Cy 81 (338)
..||||..++...- . ...|.+|.... +||+||+||.++|||+ .++||++||++++|||++.+. +.++|||
T Consensus 3 ~~C~Hl~~~~~~~p--~-~~~C~~C~~~~~~Wv~LwlCL~CG~VGC~r~s~~~HA~~H~~~t~Hpl~~S~~~~~~~vwcY 79 (102)
T 2ida_A 3 MGCRHVAGIRTVTP--S-ALGCEECLKIGSPWVHLRICRTCGHVGCCDDSPHKHATRHFHATGHPIIEGYDPPEGWGWCY 79 (102)
T ss_dssp CCCGGGGGCCCCCC--S-SSSCHHHHTTTCCCSCBEEESSSCCCCBCTTSTTCHHHHHHHHHCCCEEEESSSCSCEEEET
T ss_pred CcCcCccccccCCC--C-CCcCccccccCCcchheeeeeEcCCCcccCCCccHHHHHHHhccCCCEEEEEecCCCCEEEc
Confidence 35999997775431 2 33499998776 9999999999999998 799999999999999988775 5789999
Q ss_pred cCCeEEecc
Q psy9878 82 PDNYEIVGT 90 (338)
Q Consensus 82 ~Cd~~v~~~ 90 (338)
.||++|.++
T Consensus 80 ~cd~~V~~p 88 (102)
T 2ida_A 80 VDEVMFDLS 88 (102)
T ss_dssp TTTEEEECT
T ss_pred CCCcEEECc
Confidence 999999754
No 16
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens}
Probab=99.56 E-value=8.8e-16 Score=144.72 Aligned_cols=117 Identities=15% Similarity=0.125 Sum_probs=86.9
Q ss_pred ccccccCCChhHHHHHHHHHhcChHHHHHHhchhhhhccCCCCCCChhHHHHHH-HHHHHHHhCCCCCCCccCHHHHHHH
Q psy9878 181 IVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRF-GELMRKLWNPRNFKSHVSPHEMLQA 259 (338)
Q Consensus 181 ~~GL~NlGNTCy~NsvLQ~L~~~~~~r~~ll~~~~~~~~~~~~~~~~~~l~~~l-~~l~~~l~~~~~~~~~isP~~l~~~ 259 (338)
+.||.|+||||||||.||+|+.+|.+++.++........ ......+..+| ..+++.|-. .++.|..++..
T Consensus 9 p~GLqNlgNTCYLNSTLq~Lfsipel~d~Ll~~~~~~~~----~~~~~~l~~~L~r~i~~~Lrk-----~~~~P~~~l~~ 79 (374)
T 2vhf_A 9 KKGIQGHYNSCYLDSTLFCLFAFSSVLDTVLLRPKEKND----VEYYSETQELLRTEIVNPLRI-----YGYVCATKIMK 79 (374)
T ss_dssp SCEECCCSSCHHHHHHHHHHHSSBGGGHHHHHCCCCTTS----CTTHHHHHHHHHHTTHHHHHH-----TSEECHHHHHH
T ss_pred CccccCCCcCcHHHHHHHHHHhchHHHHHHHhCCCCCCc----chhHHHHHHHHHHHHHHHHhh-----cCCCcHHHHHH
Confidence 469999999999999999999999999999875322111 11223577788 788888863 58999999999
Q ss_pred HHhhcCCCCC-----CCCCCCHHHHHHHHHHHHHHH-hc--c---cCCCccccccccce
Q psy9878 260 VVLWSRKQFQ-----FTEQSDPIDFLSWFLNTLHRA-LN--G---TKKKDSSIVYKTFL 307 (338)
Q Consensus 260 l~~~~~~~F~-----~~~QqDA~Efl~~lLd~L~~e-~~--~---~~~~~~~ii~~iF~ 307 (338)
|+.. .|+|+ +++||||.|||..||..|... .. . ......++++++|.
T Consensus 80 LR~~-~pQfae~~G~~~~QQDaEE~~t~Ll~~L~~~ep~lkl~s~~~~~~~~~~~q~f~ 137 (374)
T 2vhf_A 80 LRKI-LEKVEAASGFTSEEKDPEEFLNILFHHILRVEPLLKIRSAGQKVQDCYFYQIFM 137 (374)
T ss_dssp HHHH-HHHHC--------CCCHHHHHHHHHTTTTCCCCSEEEEETTCCCEEESCEECCC
T ss_pred HHHH-hHHHhcccCCCccccCHHHHHHHHHHHHhhcccccccccccccccccHHHHHhc
Confidence 9987 78774 499999999999999999864 31 1 11112257888886
No 17
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=88.61 E-value=0.32 Score=51.09 Aligned_cols=40 Identities=25% Similarity=0.451 Sum_probs=33.6
Q ss_pred ccccC----CCCCeeEEeeeCceecccCCchhHhhhhhhcCccEEEee
Q psy9878 30 CSVSL----SRINVYACLVCGKYFQGRGTNTFAYTHSVAESHHVFLNL 73 (338)
Q Consensus 30 C~~c~----~~~~lw~CL~Cg~~~CGr~~~~Ha~~H~~~~~H~l~v~l 73 (338)
|.-|. +...|++||.|-.-+| ..|+..|+..++|++++++
T Consensus 49 C~~~f~~~~~~~gl~vcl~~f~~~~----~~~~~~~~~~~~~~~~l~i 92 (854)
T 3ihp_A 49 CAFSFDTPESEGGLYICMNTFLGFG----KQYVERHFNKTGQRVYLHL 92 (854)
T ss_dssp CSSSSCCTTSTTCEEEETTTCCEEC----TTTHHHHHHHHCCCEEEEE
T ss_pred CceecCCCCCCCCeEEccccccccc----HHHHHHHHhccCCceEEEE
Confidence 77665 5568999999976666 3899999999999999976
No 18
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus}
Probab=73.49 E-value=7.9 Score=33.35 Aligned_cols=73 Identities=15% Similarity=0.070 Sum_probs=48.4
Q ss_pred CCccccccCCChhHHHHHHHHHhcChHHHHHHhchhhhhccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCccCHHHHHH
Q psy9878 179 PGIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQ 258 (338)
Q Consensus 179 ~g~~GL~NlGNTCy~NsvLQ~L~~~~~~r~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~isP~~l~~ 258 (338)
.|++=|.-.-|+||+||++-+|-++... ++.+..++..++ |..|..
T Consensus 11 nG~~vLkq~dNNCwVNaa~l~LQ~~~~~---------------------------~~~aw~~f~~Gd-------~~~fV~ 56 (211)
T 3mp2_A 11 NGKIILKQGDNNCWINACCYQLQAFDFF---------------------------NNEAWEKFKKGD-------VMDFVN 56 (211)
T ss_dssp TTEEEECCCTTCHHHHHHHHHHTTCTTC---------------------------CCHHHHHHTTTC-------CHHHHH
T ss_pred CCEEEEEccCCCcHHHHHHHHHHhcChh---------------------------HHHHHHHHhCCC-------hHHHHH
Confidence 5677788888999999998877654322 224555555543 445555
Q ss_pred HHHhhcCCCCCCCCCCCHHHHHHHHHHHH
Q psy9878 259 AVVLWSRKQFQFTEQSDPIDFLSWFLNTL 287 (338)
Q Consensus 259 ~l~~~~~~~F~~~~QqDA~Efl~~lLd~L 287 (338)
.+-.. -....++--||+++|..|+..+
T Consensus 57 ~~Ya~--~~~~~G~~gDa~~~L~~Ll~~~ 83 (211)
T 3mp2_A 57 LCYAA--TTLARGHSGDAEYLLELMLNDY 83 (211)
T ss_dssp HHHHH--HTCCTTSCCCHHHHHHHHHTTC
T ss_pred HHHHH--cCCCCCCCcCHHHHHHHHHHhh
Confidence 54332 2445668889999999998543
No 19
>2fe8_A PP1AB, ORF1AB, replicase polyprotein 1AB; protease, hydrolase; 1.85A {Sars coronavirus} PDB: 3e9s_A* 3mj5_A*
Probab=69.24 E-value=7.1 Score=35.77 Aligned_cols=79 Identities=14% Similarity=0.170 Sum_probs=50.7
Q ss_pred cCCccccccCCChhHHHHHHHHHhcChHHHHHHhchhhhhccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCccCHHHHH
Q psy9878 178 LPGIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEML 257 (338)
Q Consensus 178 ~~g~~GL~NlGNTCy~NsvLQ~L~~~~~~r~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~isP~~l~ 257 (338)
..|++=|.-.-|+||+||++-+|-++.. +.. ..+|+.+..++..++ |..|.
T Consensus 99 ~~G~~vLkq~dNNCwVNaa~l~LQ~~~~--------------~F~--------~~~l~~aw~~f~~Gd-------~~~FV 149 (315)
T 2fe8_A 99 VGGLTSIKWADNNCYLSSVLLALQQLEV--------------KFN--------APALQEAYYRARAGD-------AANFC 149 (315)
T ss_dssp ETTEECCCCCTTTHHHHHHHHHHHTSCC--------------CBS--------SHHHHHHHHHHHHTC-------CHHHH
T ss_pred ECCEEEEeecCCccHHHHHHHHHHhcCC--------------ccC--------CHHHHHHHHHHhCCC-------hHHHH
Confidence 4677778888899999999877654321 000 124455666665554 45666
Q ss_pred HHHHhhcCCCCCCCCCCCHHHHHHHHHHHH
Q psy9878 258 QAVVLWSRKQFQFTEQSDPIDFLSWFLNTL 287 (338)
Q Consensus 258 ~~l~~~~~~~F~~~~QqDA~Efl~~lLd~L 287 (338)
..+-.. -....++--||+++|..|++.-
T Consensus 150 a~~Ya~--~~~~~G~~gDa~~~L~~Ll~~~ 177 (315)
T 2fe8_A 150 ALILAY--SNKTVGELGDVRETMTHLLQHA 177 (315)
T ss_dssp HHHHHH--TTCCTTSCCCHHHHHHHHHTTB
T ss_pred HHHHHh--cCCCCCCCccHHHHHHHHHhcC
Confidence 655433 3344668889999999985544
No 20
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R
Probab=68.78 E-value=2.6 Score=33.93 Aligned_cols=23 Identities=26% Similarity=0.212 Sum_probs=19.5
Q ss_pred CccccccCCChhHHHHHHHHHhc
Q psy9878 180 GIVGLNNIKANDYCNVILQALCH 202 (338)
Q Consensus 180 g~~GL~NlGNTCy~NsvLQ~L~~ 202 (338)
.+.|+.|.-++|++|++||.+..
T Consensus 12 ~fys~pN~hdncWLNtilQLfry 34 (167)
T 1qmy_A 12 TFYSRPNNHDNAWLNAILQLFRY 34 (167)
T ss_dssp ECCCCCCSSSCHHHHHHHHHHHH
T ss_pred ccccCCCCCcchHHHHHHHHHHH
Confidence 46799999999999999997543
No 21
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=60.46 E-value=4.9 Score=41.76 Aligned_cols=56 Identities=21% Similarity=0.305 Sum_probs=40.6
Q ss_pred cccccCC--CCCeeEEeeeCceecccCC---chhHhhhhhhcCc-cEEEeecC----CeEEEecCC
Q psy9878 29 LCSVSLS--RINVYACLVCGKYFQGRGT---NTFAYTHSVAESH-HVFLNLHT----LKFYCLPDN 84 (338)
Q Consensus 29 ~C~~c~~--~~~lw~CL~Cg~~~CGr~~---~~Ha~~H~~~~~H-~l~v~l~t----~~v~Cy~Cd 84 (338)
-|.=|+. +..+-.|++|++-||.... .+|...|-....| -+.+.-++ -.+-||.|.
T Consensus 13 ~c~yc~~~~~~~~~~c~~~~~wfcn~~~~~~~shi~~hl~~~~~~~~~l~~~~~~~~~~~~c~~c~ 78 (802)
T 2xzl_A 13 SCAYCGIDSAKCVIKCNSCKKWFCNTKNGTSSSHIVNHLVLSHHNVVSLHPDSDLGDTVLECYNCG 78 (802)
T ss_dssp CCTTTCCCCTTTEEEETTTCCEEECCCSSSSSCHHHHHHHHHTCCCEEECTTSSSCSCBCCCSSSC
T ss_pred hCcccCCCCCceEEEeCCCCcEecCCCCCCCccHHHHHHHHccCCeeeccCCCCCCCceeEeecCC
Confidence 3887774 5789999999999997643 6999999887655 34444333 345688873
No 22
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=51.10 E-value=6.9 Score=40.64 Aligned_cols=56 Identities=20% Similarity=0.197 Sum_probs=41.0
Q ss_pred cccccCC--CCCeeEEeeeCceecccCC---chhHhhhhhhcCcc-EEEeecC----CeEEEecCC
Q psy9878 29 LCSVSLS--RINVYACLVCGKYFQGRGT---NTFAYTHSVAESHH-VFLNLHT----LKFYCLPDN 84 (338)
Q Consensus 29 ~C~~c~~--~~~lw~CL~Cg~~~CGr~~---~~Ha~~H~~~~~H~-l~v~l~t----~~v~Cy~Cd 84 (338)
-|.=|+. +..+-.|+.|++-||.... .+|...|-....|. +.+.-++ -.+=||.|.
T Consensus 8 ~c~~c~~~~~~~~~~~~~~~~~fcn~~~~~~~shi~~h~~~~~~~~~~~~~~~~~~~~~~ec~~c~ 73 (800)
T 2wjy_A 8 ACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCG 73 (800)
T ss_dssp SCTTTCCCCGGGEEEETTTTEEEESCCTTSSSCHHHHHHHHHTCCCEEECTTSTTCSCBCCCTTTC
T ss_pred hccccCCCCCCeEEEcCCCCCccccCCCCCcccHHHHHHHHccCceEecCCCCCCCCceEEEeccC
Confidence 3887775 4679999999999997643 69999998876553 4455444 255688883
No 23
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=49.51 E-value=9 Score=26.46 Aligned_cols=25 Identities=28% Similarity=0.744 Sum_probs=19.4
Q ss_pred cccccccCCCCCe--eEEeeeCceeccc
Q psy9878 27 EKLCSVSLSRINV--YACLVCGKYFQGR 52 (338)
Q Consensus 27 ~k~C~~c~~~~~l--w~CL~Cg~~~CGr 52 (338)
...|..|.....+ +-| .||..||+.
T Consensus 15 ~~rC~~C~kkvgl~~f~C-rCg~~FC~~ 41 (64)
T 1wg2_A 15 NNRCFSCNKKVGVMGFKC-KCGSTFCGS 41 (64)
T ss_dssp SCSCTTTCCCCTTSCEEC-TTSCEECSS
T ss_pred CCcChhhCCcccccCeEe-ecCCEeccc
Confidence 3459999876544 889 899999984
No 24
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=47.84 E-value=11 Score=26.07 Aligned_cols=25 Identities=32% Similarity=0.849 Sum_probs=19.3
Q ss_pred cccccccCCCCCe--eEEeeeCceeccc
Q psy9878 27 EKLCSVSLSRINV--YACLVCGKYFQGR 52 (338)
Q Consensus 27 ~k~C~~c~~~~~l--w~CL~Cg~~~CGr 52 (338)
...|..|.....+ +-| .||..||+.
T Consensus 15 ~~rC~~C~kkvgl~~f~C-rCg~~FC~~ 41 (64)
T 1wfh_A 15 PNRCTVCRKRVGLTGFMC-RCGTTFCGS 41 (64)
T ss_dssp CCCCTTTCCCCCTTCEEC-SSSCEECTT
T ss_pred CCcChhhCCccCccCEEe-ecCCEeccc
Confidence 3459999876544 889 799999973
No 25
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.55 E-value=8.2 Score=26.94 Aligned_cols=24 Identities=21% Similarity=0.505 Sum_probs=19.9
Q ss_pred ccccccCCCCCe-----eEEeeeCceeccc
Q psy9878 28 KLCSVSLSRINV-----YACLVCGKYFQGR 52 (338)
Q Consensus 28 k~C~~c~~~~~l-----w~CL~Cg~~~CGr 52 (338)
..|..|.....| +.| .||.+||+.
T Consensus 16 ~rC~~C~kk~gL~~~egf~C-rCg~~FC~~ 44 (67)
T 1x4w_A 16 RRCFQCQTKLELVQQELGSC-RCGYVFCML 44 (67)
T ss_dssp TBCSSSCCBCCHHHHHHHCC-SSSCCCCTT
T ss_pred CcchhhCCeecccccCceEe-cCCCEehhc
Confidence 459999987776 689 999999983
No 26
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=38.69 E-value=17 Score=26.60 Aligned_cols=23 Identities=26% Similarity=0.671 Sum_probs=18.0
Q ss_pred ccccccCCCCC---eeEEeeeCceecc
Q psy9878 28 KLCSVSLSRIN---VYACLVCGKYFQG 51 (338)
Q Consensus 28 k~C~~c~~~~~---lw~CL~Cg~~~CG 51 (338)
..|..|..... -+-| .||..||+
T Consensus 26 ~rC~~C~kkvgl~~~f~C-rCg~~FC~ 51 (85)
T 1wff_A 26 KHCFLCGKKTGLATSFEC-RCGNNFCA 51 (85)
T ss_dssp CBCSSSCCBCSSSSCEEC-TTCCEECT
T ss_pred ccchhhCCeecccCCeEc-CCCCEecc
Confidence 45999986544 4889 69999997
No 27
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.24 E-value=12 Score=25.14 Aligned_cols=23 Identities=22% Similarity=0.560 Sum_probs=20.8
Q ss_pred ccccccCCCCCeeEEeeeCceecc
Q psy9878 28 KLCSVSLSRINVYACLVCGKYFQG 51 (338)
Q Consensus 28 k~C~~c~~~~~lw~CL~Cg~~~CG 51 (338)
+.|.+|.. ...|.|..|+..+|.
T Consensus 13 ~~C~vC~~-~~kY~CPrC~~~yCS 35 (56)
T 2yqq_A 13 VVCVICLE-KPKYRCPACRVPYCS 35 (56)
T ss_dssp CCCTTTCS-CCSEECTTTCCEESS
T ss_pred CccCcCcC-CCeeeCCCCCCCeeC
Confidence 35999999 999999999999995
No 28
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=35.27 E-value=16 Score=26.04 Aligned_cols=37 Identities=19% Similarity=0.424 Sum_probs=29.0
Q ss_pred cccccCC---CCCeeEEeeeCceecccCCchhHhh-hhhhc---CccE
Q psy9878 29 LCSVSLS---RINVYACLVCGKYFQGRGTNTFAYT-HSVAE---SHHV 69 (338)
Q Consensus 29 ~C~~c~~---~~~lw~CL~Cg~~~CGr~~~~Ha~~-H~~~~---~H~l 69 (338)
.|..|.. ....-.||+|...+| ..|... |.... .|.|
T Consensus 32 ~C~~C~~~~~~~A~ksCl~C~~s~C----~~hl~~~H~~~~~~~~H~L 75 (78)
T 2ffw_A 32 LCQFCDQDPAQDAVKTCVTCEVSYC----DECLKATHPNKKPFTGHRL 75 (78)
T ss_dssp BCSSCCSSSCCBCCEEETTTTEEEC----HHHHHHHSCCCSSSCSCCC
T ss_pred cCCcCCCCCCCCCeeEccCccchhh----hhhhHhhcCCCCCCCCCcc
Confidence 4999975 457889999999999 699996 97643 6754
No 29
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=35.02 E-value=22 Score=25.90 Aligned_cols=73 Identities=21% Similarity=0.326 Sum_probs=41.3
Q ss_pred cCCCCCeeEEeeeCceecccCC-chhHhhhhhhcCccEEEeecCCeEEEecCCeEEecccCCccccccchhHHHHHhhhc
Q psy9878 33 SLSRINVYACLVCGKYFQGRGT-NTFAYTHSVAESHHVFLNLHTLKFYCLPDNYEIVGTVAGPVVNRLCPYLDTINRQLL 111 (338)
Q Consensus 33 c~~~~~lw~CL~Cg~~~CGr~~-~~Ha~~H~~~~~H~l~v~l~t~~v~Cy~Cd~~v~~~~~~~~~~~~~~~~~~i~~~~~ 111 (338)
..+....|.| .||+.+-.... ..|...|... ...-|-.|+..+.. ...+.+++.
T Consensus 4 ~h~~~k~~~C-~C~~~f~~~~~l~~H~~~h~~~-----------~~~~C~~C~~~f~~-------------~~~l~~H~~ 58 (110)
T 2csh_A 4 GSSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGL-----------RPYGCGVCGKKFKM-------------KHHLVGHMK 58 (110)
T ss_dssp CCCCCCCEEC-TTSCEESSHHHHHHHHHHHSCC-----------CSEECTTTSCEESS-------------SHHHHHHHT
T ss_pred CCCCCCCEec-cCCCccCCHHHHHHHHHHcCCC-----------cCccCCCCCcccCC-------------HHHHHHHHH
Confidence 3455678999 89887654332 4555555332 23558889887642 223444443
Q ss_pred cccccceeeeecccccchhhhccCcccCC
Q psy9878 112 DFDFEKLCSVSLSRINVYACLVCGKYFQD 140 (338)
Q Consensus 112 ~~~~ek~~~~~~~~~~~~~~~~~~~~~~~ 140 (338)
.- .....+.|..|++.+..
T Consensus 59 ~h----------~~~~~~~C~~C~~~f~~ 77 (110)
T 2csh_A 59 IH----------TGIKPYECNICAKRFMW 77 (110)
T ss_dssp TT----------CCCCCEECSSSCCEESC
T ss_pred Hc----------CCCCCeeCCCCcchhcC
Confidence 21 11234668888886653
No 30
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=32.71 E-value=20 Score=24.82 Aligned_cols=31 Identities=16% Similarity=0.316 Sum_probs=22.2
Q ss_pred ccccccccCCCCCeeEEeee-Cceeccc-CCchh
Q psy9878 26 FEKLCSVSLSRINVYACLVC-GKYFQGR-GTNTF 57 (338)
Q Consensus 26 ~~k~C~~c~~~~~lw~CL~C-g~~~CGr-~~~~H 57 (338)
-..||.+|.-. ...-|+.| |-++|.| +...|
T Consensus 7 e~pWC~ICneD-AtlrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 7 GLPWCCICNED-ATLRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CCSSCTTTCSC-CCEEETTTTSEEECSSHHHHHT
T ss_pred CCCeeEEeCCC-CeEEecCCCCceehHHHHHHHc
Confidence 35689999877 66889999 7777765 33445
No 31
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=30.69 E-value=23 Score=25.13 Aligned_cols=24 Identities=25% Similarity=0.666 Sum_probs=18.8
Q ss_pred ccccccCCCCC--eeEEeeeCceeccc
Q psy9878 28 KLCSVSLSRIN--VYACLVCGKYFQGR 52 (338)
Q Consensus 28 k~C~~c~~~~~--lw~CL~Cg~~~CGr 52 (338)
..|..|..... -+.| .||..||+.
T Consensus 26 ~RC~~C~kkvgL~~f~C-rCg~~FCs~ 51 (74)
T 1wfp_A 26 TRCLSCNKKVGVTGFKC-RCGSTFCGT 51 (74)
T ss_dssp CBCSSSCCBCTTTCEEC-TTSCEECTT
T ss_pred ccchhhcCcccccceEe-ccCCEeccc
Confidence 44999986544 4899 899999973
No 32
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=35.77 E-value=11 Score=19.23 Aligned_cols=23 Identities=30% Similarity=0.583 Sum_probs=12.6
Q ss_pred eeEEeeeCceecccCC-chhHhhh
Q psy9878 39 VYACLVCGKYFQGRGT-NTFAYTH 61 (338)
Q Consensus 39 lw~CL~Cg~~~CGr~~-~~Ha~~H 61 (338)
.+.|-.||+.+-.... ..|...|
T Consensus 2 p~~C~~C~k~f~~~~~l~~H~~~H 25 (26)
T 2lvu_A 2 PYVCERCGKRFVQSSQLANHIRHH 25 (26)
Confidence 3667888876654332 3444433
No 33
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=29.15 E-value=27 Score=27.71 Aligned_cols=52 Identities=17% Similarity=0.045 Sum_probs=35.6
Q ss_pred CCCccccccccCCCCCeeEEeeeCceecccCCchhHhhhhhhcCccEEEeecCCeE
Q psy9878 23 DFDFEKLCSVSLSRINVYACLVCGKYFQGRGTNTFAYTHSVAESHHVFLNLHTLKF 78 (338)
Q Consensus 23 ~~~~~k~C~~c~~~~~lw~CL~Cg~~~CGr~~~~Ha~~H~~~~~H~l~v~l~t~~v 78 (338)
...--+.|..|.+...-|+++.=|.+.|. ..+-.|-.---|.-.|..-+.+.
T Consensus 23 ~~p~N~~CaDCg~~~P~WaS~n~GvfiC~----~CsgiHR~lG~hiS~VkSl~ld~ 74 (134)
T 2iqj_A 23 LEEDNKFCADCQSKGPRWASWNIGVFICI----RCAGIHRNLGVHISRVKSVNLDQ 74 (134)
T ss_dssp TSGGGGBCTTTCCBSCCEEETTTTEEECH----HHHHHHHHHCTTTCCEEETTTSC
T ss_pred cCcCCCcCCcCcCCCCCeEEecCCEEEhH----hhhHHHhcCCCCCCceeeccccC
Confidence 33456779999999999999999999884 45555643333555555555553
No 34
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=28.84 E-value=11 Score=19.46 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=13.9
Q ss_pred eEEeeeCceecccCC-chhHhhhh
Q psy9878 40 YACLVCGKYFQGRGT-NTFAYTHS 62 (338)
Q Consensus 40 w~CL~Cg~~~CGr~~-~~Ha~~H~ 62 (338)
|.|-.||+.+..... ..|...|.
T Consensus 3 ~~C~~C~~~f~~~~~l~~H~~~h~ 26 (29)
T 2m0e_A 3 HKCPHCDKKFNQVGNLKAHLKIHI 26 (29)
T ss_dssp CCCSSCCCCCCTTTHHHHHHHHHH
T ss_pred CcCCCCCcccCCHHHHHHHHHHhc
Confidence 567778876664433 45665554
No 35
>3c5t_B Exendin-4, exenatide; ligand-bound G protein-coupled receptor extracellular domain protein coupled receptor, glycoprotein, membrane; HET: 10M; 2.10A {Homo sapiens} SCOP: j.6.1.1 PDB: 3c59_B*
Probab=28.21 E-value=24 Score=20.66 Aligned_cols=11 Identities=27% Similarity=0.564 Sum_probs=9.3
Q ss_pred HHHHHHHHHHH
Q psy9878 276 PIDFLSWFLNT 286 (338)
Q Consensus 276 A~Efl~~lLd~ 286 (338)
|+||+.||++.
T Consensus 11 akdFv~WL~ng 21 (31)
T 3c5t_B 11 VRLFIEWLKNG 21 (31)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhC
Confidence 78999999864
No 36
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=28.13 E-value=9.5 Score=24.56 Aligned_cols=12 Identities=50% Similarity=0.874 Sum_probs=6.5
Q ss_pred CeeEEeeeCcee
Q psy9878 38 NVYACLVCGKYF 49 (338)
Q Consensus 38 ~lw~CL~Cg~~~ 49 (338)
.+|.||.||+.+
T Consensus 2 ~iY~C~rCg~~f 13 (48)
T 4ayb_P 2 AVYRCGKCWKTF 13 (48)
T ss_dssp ---CCCCTTTTC
T ss_pred cEEEeeccCCCc
Confidence 467888887644
No 37
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=27.25 E-value=26 Score=25.73 Aligned_cols=38 Identities=18% Similarity=0.410 Sum_probs=28.2
Q ss_pred cccccCC---CCCeeEEeeeCceecccCCchhHhh-hhhh---cCccEE
Q psy9878 29 LCSVSLS---RINVYACLVCGKYFQGRGTNTFAYT-HSVA---ESHHVF 70 (338)
Q Consensus 29 ~C~~c~~---~~~lw~CL~Cg~~~CGr~~~~Ha~~-H~~~---~~H~l~ 70 (338)
.|..|.. ...+..|+.||..+| ..|... |... ..|.+.
T Consensus 5 ~C~~C~~~~~~~av~~C~~C~~~~C----~~Cl~~~h~~~~~~~~h~l~ 49 (101)
T 2jun_A 5 LCQFCDQDPAQDAVKTCVTCEVSYC----DECLKATHPNKKPFTGHRLI 49 (101)
T ss_dssp BCTTCCSSSCCBCCEEETTTTEEEC----HHHHHHHSCSCSSSTTCCBS
T ss_pred CCcCCCCCCCCCceEECCcCChHHh----HHHCHHHhccCCccCCCeee
Confidence 4999984 467889999999999 577776 7632 256654
No 38
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=27.04 E-value=32 Score=27.47 Aligned_cols=50 Identities=16% Similarity=0.126 Sum_probs=34.3
Q ss_pred CccccccccCCCCCeeEEeeeCceecccCCchhHhhhhhhcCccEEEeecCCeE
Q psy9878 25 DFEKLCSVSLSRINVYACLVCGKYFQGRGTNTFAYTHSVAESHHVFLNLHTLKF 78 (338)
Q Consensus 25 ~~~k~C~~c~~~~~lw~CL~Cg~~~CGr~~~~Ha~~H~~~~~H~l~v~l~t~~v 78 (338)
.--+.|..|.+...-|+.+.=|.+.|. ..+-.|-.--.|--.|..-+.+-
T Consensus 34 p~N~~CaDCga~~P~WaS~n~GvfiC~----~CsgiHR~LG~hiS~VrSl~lD~ 83 (138)
T 2owa_A 34 PENRTCFDCESRNPTWLSLSFAVFICL----NCSSDHRKMGVHISFVRSSDLDK 83 (138)
T ss_dssp GGGGBCTTTCCBSCCEEETTTTEEECH----HHHHHHHTTCTTTCCEEETTTSC
T ss_pred cCCCcCCCCcCCCCCeEEecCCEEEhH----hhhHHHhCCCCCCCeeeecCcCc
Confidence 345779999999999999999988884 55556643223544555545444
No 39
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=26.46 E-value=17 Score=24.66 Aligned_cols=26 Identities=15% Similarity=0.353 Sum_probs=21.8
Q ss_pred ccccccccCC---CCCeeEEeeeCceecc
Q psy9878 26 FEKLCSVSLS---RINVYACLVCGKYFQG 51 (338)
Q Consensus 26 ~~k~C~~c~~---~~~lw~CL~Cg~~~CG 51 (338)
..+.|.+|.. ....|-|..|+..+|.
T Consensus 10 ~~~~C~vC~~~~~~~akY~CPrC~~rYCS 38 (59)
T 1x4s_A 10 PAGPCGFCPAGEVQPARYTCPRCNAPYCS 38 (59)
T ss_dssp CCEEECSSCTTCCEEECEECTTTCCEESS
T ss_pred CCCcCcCCCCCcCCCccccCcCCCCCccC
Confidence 3457999986 5689999999999996
No 40
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=26.16 E-value=14 Score=19.07 Aligned_cols=13 Identities=15% Similarity=0.616 Sum_probs=9.2
Q ss_pred eeEEeeeCceecc
Q psy9878 39 VYACLVCGKYFQG 51 (338)
Q Consensus 39 lw~CL~Cg~~~CG 51 (338)
.|.|-.||+.+-.
T Consensus 3 ~~~C~~C~k~f~~ 15 (27)
T 2kvh_A 3 PFSCSLCPQRSRD 15 (27)
T ss_dssp CEECSSSSCEESS
T ss_pred CccCCCcChhhCC
Confidence 5778888876653
No 41
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.03 E-value=21 Score=19.75 Aligned_cols=28 Identities=21% Similarity=0.284 Sum_probs=17.7
Q ss_pred CCCCeeEEeeeCceecccCC-chhHhhhh
Q psy9878 35 SRINVYACLVCGKYFQGRGT-NTFAYTHS 62 (338)
Q Consensus 35 ~~~~lw~CL~Cg~~~CGr~~-~~Ha~~H~ 62 (338)
.....+.|-.||+.+-.... ..|...|.
T Consensus 5 ~~~k~~~C~~C~k~f~~~~~l~~H~~~H~ 33 (36)
T 2elt_A 5 SSGKPYKCPQCSYASAIKANLNVHLRKHT 33 (36)
T ss_dssp CCCCSEECSSSSCEESSHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCcccCCHHHHHHHHHHcc
Confidence 44567889999887654332 45555553
No 42
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=25.91 E-value=34 Score=28.08 Aligned_cols=49 Identities=8% Similarity=0.067 Sum_probs=35.1
Q ss_pred cccccccCCCCCeeEEeeeCceecccCCchhHhhhhhhcCccEEEeecCCeEE
Q psy9878 27 EKLCSVSLSRINVYACLVCGKYFQGRGTNTFAYTHSVAESHHVFLNLHTLKFY 79 (338)
Q Consensus 27 ~k~C~~c~~~~~lw~CL~Cg~~~CGr~~~~Ha~~H~~~~~H~l~v~l~t~~v~ 79 (338)
-+.|..|.+...-|+++.=|.+.|. ..+-.|-.--.|--.|..-+.+.|
T Consensus 22 N~~CaDCga~~P~WaS~nlGvflCi----~CSGiHR~LG~hISkVKSltLD~W 70 (163)
T 3sub_A 22 NNKCFDCGISNPDWVSVNHGIFLCI----NCSGVHRSLGVHISIVRSIKMDIF 70 (163)
T ss_dssp GGBCTTTCCBSCCEEETTTTEEECH----HHHHHHHHTCTTTCCEEETTTCCC
T ss_pred CCccccCCCCCCCeEEecCCeeEHH----hhhHHhcCCCCCCCeeeeccccCc
Confidence 5679999999999999999988885 455556432235445666666665
No 43
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=25.15 E-value=21 Score=22.90 Aligned_cols=13 Identities=38% Similarity=0.976 Sum_probs=9.0
Q ss_pred CeeEEeeeCceec
Q psy9878 38 NVYACLVCGKYFQ 50 (338)
Q Consensus 38 ~lw~CL~Cg~~~C 50 (338)
..|.|..||+++=
T Consensus 3 ~~y~C~vCGyvyd 15 (46)
T 6rxn_A 3 QKYVCNVCGYEYD 15 (46)
T ss_dssp CCEEETTTCCEEC
T ss_pred CEEECCCCCeEEe
Confidence 4577888877654
No 44
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.68 E-value=18 Score=20.13 Aligned_cols=27 Identities=22% Similarity=0.475 Sum_probs=17.2
Q ss_pred CCCCeeEEeeeCceecccCC-chhHhhh
Q psy9878 35 SRINVYACLVCGKYFQGRGT-NTFAYTH 61 (338)
Q Consensus 35 ~~~~lw~CL~Cg~~~CGr~~-~~Ha~~H 61 (338)
+....|.|-.||+.+-.... ..|...|
T Consensus 5 ~~~k~~~C~~C~k~f~~~~~l~~H~~~H 32 (36)
T 2els_A 5 SSGKIFTCEYCNKVFKFKHSLQAHLRIH 32 (36)
T ss_dssp SCCCCEECTTTCCEESSHHHHHHHHHHH
T ss_pred CCCCCEECCCCCceeCCHHHHHHHHHHh
Confidence 45567899999987764322 3455555
No 45
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=29.68 E-value=16 Score=19.02 Aligned_cols=23 Identities=26% Similarity=0.639 Sum_probs=13.7
Q ss_pred eEEeeeCceecccCC-chhHhhhh
Q psy9878 40 YACLVCGKYFQGRGT-NTFAYTHS 62 (338)
Q Consensus 40 w~CL~Cg~~~CGr~~-~~Ha~~H~ 62 (338)
+.|-.||+.+-.... ..|...|.
T Consensus 3 ~~C~~C~k~f~~~~~l~~H~~~H~ 26 (29)
T 2lvt_A 3 CQCVMCGKAFTQASSLIAHVRQHT 26 (29)
Confidence 567788876654433 45555553
No 46
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=29.63 E-value=17 Score=19.03 Aligned_cols=24 Identities=25% Similarity=0.676 Sum_probs=14.3
Q ss_pred eeEEeeeCceecccCC-chhHhhhh
Q psy9878 39 VYACLVCGKYFQGRGT-NTFAYTHS 62 (338)
Q Consensus 39 lw~CL~Cg~~~CGr~~-~~Ha~~H~ 62 (338)
.+.|-.||+.+..... ..|...|.
T Consensus 3 ~~~C~~C~k~f~~~~~l~~H~~~h~ 27 (30)
T 2lvr_A 3 PYVCIHCQRQFADPGALQRHVRIHT 27 (30)
Confidence 4678888877654433 45555553
No 47
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=23.64 E-value=14 Score=19.15 Aligned_cols=23 Identities=35% Similarity=0.645 Sum_probs=13.6
Q ss_pred eEEeeeCceecccCC-chhHhhhh
Q psy9878 40 YACLVCGKYFQGRGT-NTFAYTHS 62 (338)
Q Consensus 40 w~CL~Cg~~~CGr~~-~~Ha~~H~ 62 (338)
|.|-.||+.+..... ..|...|.
T Consensus 3 ~~C~~C~k~f~~~~~l~~H~~~H~ 26 (29)
T 2m0f_A 3 LKCRECGKQFTTSGNLKRHLRIHS 26 (29)
T ss_dssp EECTTTSCEESCHHHHHHHHHHHH
T ss_pred ccCCCCCCccCChhHHHHHHHHhc
Confidence 567778876654332 45655554
No 48
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=23.59 E-value=20 Score=18.57 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=12.8
Q ss_pred eEEeeeCceecccCC-chhHhhh
Q psy9878 40 YACLVCGKYFQGRGT-NTFAYTH 61 (338)
Q Consensus 40 w~CL~Cg~~~CGr~~-~~Ha~~H 61 (338)
+.|-.||+.+-.... ..|...|
T Consensus 3 ~~C~~C~k~f~~~~~l~~H~~~H 25 (29)
T 1rik_A 3 FACPECPKRFMRSDHLTLHILLH 25 (29)
T ss_dssp EECSSSSCEESCSHHHHHHHTGG
T ss_pred ccCCCCCchhCCHHHHHHHHHHh
Confidence 667788877654332 3454444
No 49
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=23.30 E-value=22 Score=19.52 Aligned_cols=27 Identities=15% Similarity=0.386 Sum_probs=16.8
Q ss_pred CCCeeEEeeeCceecccCC-chhHhhhh
Q psy9878 36 RINVYACLVCGKYFQGRGT-NTFAYTHS 62 (338)
Q Consensus 36 ~~~lw~CL~Cg~~~CGr~~-~~Ha~~H~ 62 (338)
....|.|-.||+.+-.... ..|...|.
T Consensus 4 ~~k~~~C~~C~k~f~~~~~l~~H~~~H~ 31 (35)
T 1srk_A 4 GKRPFVCRICLSAFTTKANCARHLKVHT 31 (35)
T ss_dssp CCSCEECSSSCCEESSHHHHHHHHGGGT
T ss_pred CCcCeeCCCCCcccCCHHHHHHHHHHcC
Confidence 4467889999887764332 35555553
No 50
>2kn0_A FN14; tweak, TNF receptor, CRD, mutagenesis, apoptosis; NMR {Xenopus laevis}
Probab=23.06 E-value=13 Score=25.08 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=18.1
Q ss_pred Ccccc--ccccCCCCCeeEEeeeCc
Q psy9878 25 DFEKL--CSVSLSRINVYACLVCGK 47 (338)
Q Consensus 25 ~~~k~--C~~c~~~~~lw~CL~Cg~ 47 (338)
|+.|. |+.|........|+.|..
T Consensus 14 dLdkCM~Cs~C~~~p~SdfC~~cps 38 (66)
T 2kn0_A 14 DLGKCMECSVCKNSEKSDFCQNCPS 38 (66)
T ss_dssp TTTEEEESTTCSSCCCCTTTTTCCC
T ss_pred hHHhhcccCcCCCCCCcccccCCCC
Confidence 34454 888999999999999953
No 51
>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A
Probab=22.80 E-value=18 Score=30.98 Aligned_cols=34 Identities=21% Similarity=0.306 Sum_probs=0.0
Q ss_pred CCCCCeeEEeeeCceecccCCchhHhhhhhhcCccEE
Q psy9878 34 LSRINVYACLVCGKYFQGRGTNTFAYTHSVAESHHVF 70 (338)
Q Consensus 34 ~~~~~lw~CL~Cg~~~CGr~~~~Ha~~H~~~~~H~l~ 70 (338)
++..-...|..||+.+-| ..-|..|+++++|.=|
T Consensus 175 ~~~~~~l~C~~C~~~~~g---~~~a~~ha~~tgH~~f 208 (212)
T 3by4_A 175 NTHKAQIKCNTCQMTFVG---EREVARHAESTGHVDF 208 (212)
T ss_dssp -------------------------------------
T ss_pred cccCeEEEcccCCCcccC---HHHHHHHHHHhCCCCC
Confidence 344556779999988776 4568889999999543
No 52
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.28 E-value=31 Score=27.61 Aligned_cols=50 Identities=16% Similarity=0.071 Sum_probs=33.3
Q ss_pred CccccccccCCCCCeeEEeeeCceecccCCchhHhhhhhhcCccEEEeecCCeE
Q psy9878 25 DFEKLCSVSLSRINVYACLVCGKYFQGRGTNTFAYTHSVAESHHVFLNLHTLKF 78 (338)
Q Consensus 25 ~~~k~C~~c~~~~~lw~CL~Cg~~~CGr~~~~Ha~~H~~~~~H~l~v~l~t~~v 78 (338)
.--+.|..|.+...-|+++.=|.+.|- ..+-.|-.---|.-.|..-+.+.
T Consensus 27 p~N~~CaDCga~~P~WaS~n~GvfiC~----~CsgiHR~LG~hiS~VkSl~ld~ 76 (141)
T 2crr_A 27 EDNKYCADCEAKGPRWASWNIGVFICI----RCAGIHRNLGVHISRVKSVNLDQ 76 (141)
T ss_dssp GGGSSCSSSCCSSCCSEETTTTEECCH----HHHHHHHHHCTTTCCCBCSSSSC
T ss_pred ccCCcCCCCCCCCCCeEEeccCeEEhh----hhhHhHhcCCCCCCeeeECCCCC
Confidence 346779999999999999999988884 44555543223544444444443
No 53
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=22.21 E-value=40 Score=29.95 Aligned_cols=50 Identities=10% Similarity=-0.102 Sum_probs=34.1
Q ss_pred CCccccccccCCCCCeeEEeeeCceecccCCchhHhhhhhhcCccEEEeecCCe
Q psy9878 24 FDFEKLCSVSLSRINVYACLVCGKYFQGRGTNTFAYTHSVAESHHVFLNLHTLK 77 (338)
Q Consensus 24 ~~~~k~C~~c~~~~~lw~CL~Cg~~~CGr~~~~Ha~~H~~~~~H~l~v~l~t~~ 77 (338)
..--+.|..|.+...-|+.+..|.+.|. ..+-.|-.--.|.-.|..-+.+
T Consensus 39 ~~~n~~c~dc~~~~p~w~s~~~g~~~c~----~cs~~hr~lg~~is~v~sl~lD 88 (301)
T 2b0o_E 39 RPGNSQCCDCGAADPTWLSTNLGVLTCI----QCSGVHRELGVRFSRMQSLTLD 88 (301)
T ss_dssp STTTTBCTTTCCBSCCEEETTTTEEECH----HHHHHHHHHCTTTCCEEETTTS
T ss_pred CCCCCcCCCCCCCCCCeEEeecCeEEcH----HHHHHHHhhCCCcccccccCcC
Confidence 3456779999999999999999999995 4444553323355445544443
No 54
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.21 E-value=46 Score=22.40 Aligned_cols=27 Identities=22% Similarity=0.428 Sum_probs=19.7
Q ss_pred CccccccccCCCCCeeEEeeeCceecc
Q psy9878 25 DFEKLCSVSLSRINVYACLVCGKYFQG 51 (338)
Q Consensus 25 ~~~k~C~~c~~~~~lw~CL~Cg~~~CG 51 (338)
+....|.+|.....-.+-+.||+.+|.
T Consensus 18 ~~~~~C~IC~~~~~~~~~~~CgH~fC~ 44 (73)
T 2ysl_A 18 QEEVICPICLDILQKPVTIDCGHNFCL 44 (73)
T ss_dssp CCCCBCTTTCSBCSSEEECTTCCEEEH
T ss_pred ccCCEeccCCcccCCeEEcCCCChhhH
Confidence 345569999876555566799999993
No 55
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.38 E-value=33 Score=19.09 Aligned_cols=28 Identities=21% Similarity=0.449 Sum_probs=17.7
Q ss_pred CCCCeeEEeeeCceeccc-CC-chhHhhhh
Q psy9878 35 SRINVYACLVCGKYFQGR-GT-NTFAYTHS 62 (338)
Q Consensus 35 ~~~~lw~CL~Cg~~~CGr-~~-~~Ha~~H~ 62 (338)
+....+.|-.||+.+-.. .. ..|...|.
T Consensus 5 ~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~ 34 (37)
T 2elp_A 5 SSGRAMKCPYCDFYFMKNGSDLQRHIWAHE 34 (37)
T ss_dssp CCCCCEECSSSSCEECSSCHHHHHHHHHHH
T ss_pred CCCCCeECCCCChhhccCHHHHHHHHHhcC
Confidence 345678899999877654 22 45555553
No 56
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=21.24 E-value=52 Score=26.53 Aligned_cols=53 Identities=13% Similarity=0.081 Sum_probs=34.8
Q ss_pred CCCccccccccCCCCCeeEEeeeCceecccCCchhHhhhhhhcCccEEEeecCCeEE
Q psy9878 23 DFDFEKLCSVSLSRINVYACLVCGKYFQGRGTNTFAYTHSVAESHHVFLNLHTLKFY 79 (338)
Q Consensus 23 ~~~~~k~C~~c~~~~~lw~CL~Cg~~~CGr~~~~Ha~~H~~~~~H~l~v~l~t~~v~ 79 (338)
...--+.|..|.....-|+.+.=|.+.|. ..+-.|-.---|--.|..-+.+-|
T Consensus 34 ~~p~N~~CaDCga~~P~WaS~nlGvfiC~----~CSgiHR~LG~hISkVkSl~LD~W 86 (147)
T 3dwd_A 34 VQDENNVCFECGAFNPQWVSVTYGIWICL----ECSGRHRGLGVHLSFVRSVTMDKW 86 (147)
T ss_dssp TSTTTTBCTTTCCBSCCEEETTTTEEECH----HHHHHHHHHCTTTCCEEESCC--C
T ss_pred cCcCCCccCCCCCCCCCeEEecccEeEhH----hhChHHhcCCCCCCccccccccCC
Confidence 33456779999999999999998888885 455556432235445555555544
No 57
>1t5q_A Gastric inhibitory polypeptide; GIP, molecular modelling, helix, diabetes, obesity, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=21.09 E-value=51 Score=19.05 Aligned_cols=11 Identities=36% Similarity=0.987 Sum_probs=8.4
Q ss_pred CHHHHHHHHHH
Q psy9878 275 DPIDFLSWFLN 285 (338)
Q Consensus 275 DA~Efl~~lLd 285 (338)
=|++|+.||++
T Consensus 18 ~ak~fv~wLl~ 28 (30)
T 1t5q_A 18 HQQDFVNWLLA 28 (30)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 37888888876
No 58
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=20.74 E-value=13 Score=25.78 Aligned_cols=26 Identities=27% Similarity=0.460 Sum_probs=20.3
Q ss_pred ccccccccCCCCCeeEEeeeCce-ecc
Q psy9878 26 FEKLCSVSLSRINVYACLVCGKY-FQG 51 (338)
Q Consensus 26 ~~k~C~~c~~~~~lw~CL~Cg~~-~CG 51 (338)
.+..|.+|.....-.+-+.||+. +|.
T Consensus 23 ~~~~C~iC~~~~~~~~~~pCgH~~~C~ 49 (74)
T 4ic3_A 23 EEKLCKICMDRNIAIVFVPCGHLVTCK 49 (74)
T ss_dssp HHTBCTTTSSSBCCEEEETTCCBCCCH
T ss_pred cCCCCCCCCCCCCCEEEcCCCChhHHH
Confidence 34569999987776777899998 884
No 59
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=20.70 E-value=56 Score=26.23 Aligned_cols=50 Identities=16% Similarity=0.189 Sum_probs=34.5
Q ss_pred CCccccccccCCCCCeeEEeeeCceecccCCchhHhhhhhhcCccEEEeecCCe
Q psy9878 24 FDFEKLCSVSLSRINVYACLVCGKYFQGRGTNTFAYTHSVAESHHVFLNLHTLK 77 (338)
Q Consensus 24 ~~~~k~C~~c~~~~~lw~CL~Cg~~~CGr~~~~Ha~~H~~~~~H~l~v~l~t~~ 77 (338)
..--+.|..|.+...-|+++.=|.+.|. ..+-.|-.--.|--.|..-+.+
T Consensus 34 ~p~N~~CaDCga~~P~WaS~n~GvfiC~----~CsgiHR~LG~hIS~VrSl~LD 83 (144)
T 2p57_A 34 VPTNKACFDCGAKNPSWASITYGVFLCI----DCSGVHRSLGVHLSFIRSTELD 83 (144)
T ss_dssp SGGGGBCTTTCCBSCCEEEGGGTEEECH----HHHHHHHHHCTTTCCEEESSSC
T ss_pred CCCCCcCCCCcCCCCCeEEeccCEEEhh----hchHHHcCCCCCCCeeeecccC
Confidence 3456779999999999999999999984 4555564322354455544444
No 60
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=20.65 E-value=34 Score=22.39 Aligned_cols=12 Identities=25% Similarity=0.921 Sum_probs=6.7
Q ss_pred eeEEeeeCceec
Q psy9878 39 VYACLVCGKYFQ 50 (338)
Q Consensus 39 lw~CL~Cg~~~C 50 (338)
.|.|..||+++=
T Consensus 2 ~~~C~~CGyvYd 13 (52)
T 1yk4_A 2 KLSCKICGYIYD 13 (52)
T ss_dssp EEEESSSSCEEE
T ss_pred cEEeCCCCeEEC
Confidence 366666665543
No 61
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=20.34 E-value=55 Score=26.12 Aligned_cols=49 Identities=8% Similarity=0.093 Sum_probs=32.0
Q ss_pred ccccccccCCCCCeeEEeeeCceecccCCchhHhhhhhhcCccEEEeecCCeEE
Q psy9878 26 FEKLCSVSLSRINVYACLVCGKYFQGRGTNTFAYTHSVAESHHVFLNLHTLKFY 79 (338)
Q Consensus 26 ~~k~C~~c~~~~~lw~CL~Cg~~~CGr~~~~Ha~~H~~~~~H~l~v~l~t~~v~ 79 (338)
--+.|..|++...-|+++.=|.+.|. ..+-.|-.---| -.|..-+.+-|
T Consensus 24 ~N~~CaDCg~~~P~WaS~n~GvfiC~----~CsgiHR~LG~~-s~VrSl~ld~w 72 (140)
T 2olm_A 24 HNRKCFDCDQRGPTYVNMTVGSFVCT----SCSGSLRGLNPP-HRVKSISMTTF 72 (140)
T ss_dssp GGGSCTTTCSSCCCEEETTTTEEECH----HHHHHHTTSSSC-CCEEETTTCCC
T ss_pred CCCcCCCCCCCCCCceeeccCEEEch----hccchhccCCCc-ceeeecCCCCC
Confidence 46779999999999999999988884 444455321114 24444444433
Done!