RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9878
(338 letters)
>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase
2, USP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 336
Score = 81.3 bits (199), Expect = 5e-18
Identities = 37/138 (26%), Positives = 61/138 (44%), Gaps = 3/138 (2%)
Query: 180 GIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMR 239
G+ GL N+ + N ILQ L + LRDY L+ + Y R ++ LV+ F +L++
Sbjct: 2 GLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRL-YMRDLHHGSNAHTALVEEFAKLIQ 60
Query: 240 KLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDS 299
+W VSP E + ++ +F Q D +FL + L+ LH +N +
Sbjct: 61 TIWTSSP-NDVVSPSEFKTQIQRYA-PRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPK 118
Query: 300 SIVYKTFLGSMKVKTRKI 317
S K R++
Sbjct: 119 SNPENLDHLPDDEKGRQM 136
>d2uzga1 g.44.1.5 (A:36-130) Ubiquitin carboxyl-terminal hydrolase
33, UBP33 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 75.8 bits (186), Expect = 5e-18
Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 7/85 (8%)
Query: 11 CPYLDTINR----QLLDFDFEKLCSVSLSRINVYACL--VCGKYFQGRGTNTFAYTHSVA 64
CP+LD++ L+ + N++ACL C G + HS
Sbjct: 4 CPHLDSVGEITKEDLIQKSLGTCQDCKVQGPNLWACLENRCSYVGCGESQVDHSTIHSQE 63
Query: 65 ESHHVFLNLHTLKFYC-LPDNYEIV 88
H++ +NL TL+ +C +
Sbjct: 64 TKHYLTVNLTTLRVWCYACSKEVFL 88
Score = 39.6 bits (92), Expect = 4e-05
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 6/49 (12%)
Query: 100 CPYLDTINR----QLLDFDFEKLCSVSLSRINVYACL--VCGKYFQDSS 142
CP+LD++ L+ + N++ACL C S
Sbjct: 4 CPHLDSVGEITKEDLIQKSLGTCQDCKVQGPNLWACLENRCSYVGCGES 52
>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase
8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 348
Score = 79.4 bits (194), Expect = 3e-17
Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 4/122 (3%)
Query: 179 PGIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKR-PPGDSSFLLVQRFGEL 237
P + GL N+ Y N ILQ LC+ L DYF R + R + + FG +
Sbjct: 13 PALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGII 72
Query: 238 MRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKK 297
M+ LW + ++SP + + + QF Q D + L + ++ LH LN +
Sbjct: 73 MKALWTGQ--YRYISPKDF-KITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNR 129
Query: 298 DS 299
Sbjct: 130 KR 131
>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase
14 {Human (Homo sapiens) [TaxId: 9606]}
Length = 383
Score = 74.0 bits (180), Expect = 2e-15
Identities = 25/162 (15%), Positives = 50/162 (30%), Gaps = 28/162 (17%)
Query: 176 LYLPGIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFG 235
+ LP GL N+ Y N +Q + V L+D R R + ++
Sbjct: 1 MELP--CGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAA-LR 57
Query: 236 ELMRKLWNPRNFKSHVSPHEMLQAVVLWS-----RKQFQFTEQSDPIDFLSWFLNTLHRA 290
+L + S + P +LQ + + + + Q D + + L +
Sbjct: 58 DLFDSMDKTS---SSIPPIILLQFLHMAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQK 114
Query: 291 LNGTKK-----------------KDSSIVYKTFLGSMKVKTR 315
L + K S++ + F + +
Sbjct: 115 LEAIEDDSVKETDSSSASAATPSKKKSLIDQFFGVEFETTMK 156
>d2g45a1 g.44.1.5 (A:173-285) Ubiquitin carboxyl-terminal
hydrolase 5, UBP5 {Human (Homo sapiens) [TaxId: 9606]}
Length = 113
Score = 62.3 bits (151), Expect = 6e-13
Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 11/71 (15%)
Query: 30 CSVSLSRINVYACLVCG------KYFQGRGTNTFAYTHSVAESHHVFLNLHTL-----KF 78
CS R N++ L G +YF G G N A H + + + L T+
Sbjct: 27 CSKCDMRENLWLNLTDGSILCGRRYFDGSGGNNHAVEHYRETGYPLAVKLGTITPDGADV 86
Query: 79 YCLPDNYEIVG 89
Y ++ ++
Sbjct: 87 YSYDEDDMVLD 97
Score = 28.4 bits (63), Expect = 0.52
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 6/30 (20%)
Query: 119 CSVSLSRINVYACLVCG------KYFQDSS 142
CS R N++ L G +YF S
Sbjct: 27 CSKCDMRENLWLNLTDGSILCGRRYFDGSG 56
>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 397
Score = 59.0 bits (141), Expect = 2e-10
Identities = 29/135 (21%), Positives = 43/135 (31%), Gaps = 11/135 (8%)
Query: 182 VGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPG---DSSFLLVQRFGELM 238
VG N+ Y N LQAL V LRD L V + +V
Sbjct: 7 VGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMKRCF 66
Query: 239 RKLWNPRNFKSHVSPHEMLQAV------VLWSRKQFQFTEQSDPIDFLSWFLNTLHRALN 292
L N V P +L + Q F +Q D + + +++
Sbjct: 67 ENLQNKS--FKSVLPVVLLNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSMSIVFG 124
Query: 293 GTKKKDSSIVYKTFL 307
+D I +KT +
Sbjct: 125 DKFSEDFRIQFKTTI 139
>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7,
HAUSP) {Human (Homo sapiens) [TaxId: 9606]}
Length = 347
Score = 57.8 bits (138), Expect = 4e-10
Identities = 21/114 (18%), Positives = 37/114 (32%), Gaps = 12/114 (10%)
Query: 179 PGIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELM 238
G VGL N A Y N +LQ L LR + DSS + +
Sbjct: 4 TGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVY------MMPTEGDDSSKSVPLALQRVF 57
Query: 239 RKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALN 292
+L + V ++ ++ + + Q D + L+ + +
Sbjct: 58 YELQHS---DKPVGTKKLTKS---FGWETLDSFMQHDVQELCRVLLDNVENKMK 105
>d2idaa1 g.44.1.5 (A:1-102) Hypothetical protein RPA1320
{Rhodopseudomonas palustris [TaxId: 1076]}
Length = 102
Score = 33.4 bits (76), Expect = 0.007
Identities = 14/85 (16%), Positives = 21/85 (24%), Gaps = 12/85 (14%)
Query: 11 CPYLDTINRQLLDFDFEKL-CSVSLSRIN----VYACLVCGK-YFQGRGTNTFAYTHSVA 64
C ++ I L C L + + C CG + A H A
Sbjct: 5 CRHVAGIR----TVTPSALGCEECLKIGSPWVHLRICRTCGHVGCCDDSPHKHATRHFHA 60
Query: 65 ESHHVFLNL--HTLKFYCLPDNYEI 87
H + +C D
Sbjct: 61 TGHPIIEGYDPPEGWGWCYVDEVMF 85
>d1s1fa_ a.104.1.1 (A:) Cyp158a2 {Streptomyces coelicolor [TaxId:
1902]}
Length = 399
Score = 26.7 bits (57), Expect = 4.7
Identities = 9/40 (22%), Positives = 17/40 (42%)
Query: 217 ARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEM 256
R+ P G+ LV R ++ +PR + V ++
Sbjct: 33 TRISLPNGEGWAWLVTRHDDVRLVTNDPRFGREAVMDRQV 72
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 26
Score = 23.3 bits (51), Expect = 5.9
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 129 YACLVCGKYFQDSS 142
Y CL CGK F +S
Sbjct: 3 YKCLECGKAFSQNS 16
>d1gwia_ a.104.1.1 (A:) Cyp154c1 monooxygenase {Streptomyces
coelicolor [TaxId: 1902]}
Length = 403
Score = 25.9 bits (55), Expect = 7.9
Identities = 10/71 (14%), Positives = 16/71 (22%)
Query: 221 RPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFL 280
PG V E L +PR K + + + +
Sbjct: 29 ELPGGVPVWAVTHHAEAKALLTDPRLVKDINVWGAWRRGEIPADWPLIGLANPGRSMLTV 88
Query: 281 SWFLNTLHRAL 291
+ R L
Sbjct: 89 DGAEHRRLRTL 99
>d1iqva_ a.75.1.1 (A:) Ribosomal protein S7 {Archaeon Pyrococcus
horikoshii [TaxId: 53953]}
Length = 201
Score = 25.6 bits (56), Expect = 8.2
Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 288 HRALNGTKKKDSSIVYKTFLGSMKVKTRKIPPVELEEKV 326
HR+LN K + +V + F ++ +T K P+++
Sbjct: 76 HRSLNSKKVRAYEVVKEAFKI-IEKRTGK-NPIQVLVWA 112
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.140 0.430
Gapped
Lambda K H
0.267 0.0571 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,292,775
Number of extensions: 61512
Number of successful extensions: 245
Number of sequences better than 10.0: 1
Number of HSP's gapped: 238
Number of HSP's successfully gapped: 18
Length of query: 338
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 252
Effective length of database: 1,226,816
Effective search space: 309157632
Effective search space used: 309157632
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.5 bits)