Query psy9879
Match_columns 115
No_of_seqs 200 out of 1038
Neff 7.7
Searched_HMMs 46136
Date Fri Aug 16 21:58:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9879.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9879hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15113 glutathione S-transfe 99.8 3.4E-19 7.4E-24 128.3 9.9 82 8-92 27-115 (214)
2 PLN02473 glutathione S-transfe 99.8 4.4E-18 9.6E-23 121.9 9.6 79 8-89 22-105 (214)
3 PRK09481 sspA stringent starva 99.8 5.9E-18 1.3E-22 121.6 9.4 75 8-88 30-107 (211)
4 PRK13972 GSH-dependent disulfi 99.8 7E-18 1.5E-22 121.3 9.5 79 7-88 19-105 (215)
5 PLN02395 glutathione S-transfe 99.7 1E-17 2.2E-22 119.9 9.8 78 8-88 21-103 (215)
6 KOG0867|consensus 99.7 8.7E-18 1.9E-22 122.8 8.2 80 7-89 21-105 (226)
7 PRK10542 glutathionine S-trans 99.7 5.8E-17 1.3E-21 114.8 8.8 85 7-93 18-108 (201)
8 COG0625 Gst Glutathione S-tran 99.7 4.9E-17 1.1E-21 116.5 8.5 82 8-93 20-109 (211)
9 KOG0868|consensus 99.7 6.4E-17 1.4E-21 114.1 7.1 77 9-87 26-105 (217)
10 PRK11752 putative S-transferas 99.7 1.6E-16 3.4E-21 118.3 9.5 75 11-88 72-151 (264)
11 TIGR01262 maiA maleylacetoacet 99.7 3.2E-16 7E-21 111.7 9.5 83 7-91 18-104 (210)
12 KOG1695|consensus 99.7 4.3E-16 9.3E-21 112.7 8.3 81 8-94 23-103 (206)
13 KOG0406|consensus 99.6 2.3E-15 5.1E-20 110.2 10.4 77 8-89 29-109 (231)
14 PF02798 GST_N: Glutathione S- 99.6 7.1E-16 1.5E-20 95.0 5.9 55 8-64 20-76 (76)
15 cd03050 GST_N_Theta GST_N fami 99.6 2.5E-15 5.3E-20 92.0 6.6 58 7-66 19-76 (76)
16 PRK10357 putative glutathione 99.6 5.4E-15 1.2E-19 105.0 9.0 75 8-88 20-98 (202)
17 cd03046 GST_N_GTT1_like GST_N 99.6 4.2E-15 9.1E-20 90.4 7.0 59 7-67 18-76 (76)
18 cd03052 GST_N_GDAP1 GST_N fami 99.6 3.1E-15 6.8E-20 91.6 5.9 55 7-63 19-73 (73)
19 cd03057 GST_N_Beta GST_N famil 99.6 4.3E-15 9.3E-20 91.0 6.4 59 7-67 18-77 (77)
20 cd03075 GST_N_Mu GST_N family, 99.6 4.7E-15 1E-19 92.7 6.1 58 8-66 20-82 (82)
21 cd03045 GST_N_Delta_Epsilon GS 99.6 6.2E-15 1.3E-19 89.4 6.2 55 8-64 20-74 (74)
22 cd03048 GST_N_Ure2p_like GST_N 99.6 8.5E-15 1.8E-19 90.6 6.8 58 8-67 20-80 (81)
23 PLN02378 glutathione S-transfe 99.5 1.4E-13 3E-18 99.3 11.9 72 8-85 31-103 (213)
24 cd03059 GST_N_SspA GST_N famil 99.5 2.5E-14 5.4E-19 86.4 6.4 55 7-66 19-73 (73)
25 PTZ00057 glutathione s-transfe 99.5 8.8E-14 1.9E-18 99.6 9.9 82 8-93 24-109 (205)
26 cd03047 GST_N_2 GST_N family, 99.5 2.3E-14 4.9E-19 87.1 5.9 54 8-63 20-73 (73)
27 cd03053 GST_N_Phi GST_N family 99.5 3E-14 6.5E-19 86.8 6.3 56 8-65 21-76 (76)
28 cd03061 GST_N_CLIC GST_N famil 99.5 4.1E-14 8.8E-19 90.5 6.4 55 8-67 33-87 (91)
29 cd03056 GST_N_4 GST_N family, 99.5 6.4E-14 1.4E-18 84.4 5.8 54 8-63 20-73 (73)
30 cd03044 GST_N_EF1Bgamma GST_N 99.5 5.7E-14 1.2E-18 85.9 5.5 54 8-64 20-74 (75)
31 cd03042 GST_N_Zeta GST_N famil 99.5 8.5E-14 1.8E-18 83.9 5.8 54 8-63 20-73 (73)
32 cd03076 GST_N_Pi GST_N family, 99.5 5E-14 1.1E-18 85.9 4.8 53 8-65 21-73 (73)
33 PLN02817 glutathione dehydroge 99.5 9.2E-13 2E-17 98.5 12.2 72 8-85 84-156 (265)
34 TIGR00862 O-ClC intracellular 99.5 3.8E-13 8.3E-18 99.2 9.8 55 8-67 30-84 (236)
35 cd03077 GST_N_Alpha GST_N fami 99.5 1.4E-13 3E-18 85.3 6.3 55 8-69 21-79 (79)
36 cd03043 GST_N_1 GST_N family, 99.5 1.5E-13 3.3E-18 83.9 5.8 54 7-63 20-73 (73)
37 cd03058 GST_N_Tau GST_N family 99.5 2.5E-13 5.3E-18 82.6 6.2 54 8-66 20-74 (74)
38 cd03038 GST_N_etherase_LigE GS 99.4 3.3E-13 7E-18 84.1 5.9 57 8-67 27-84 (84)
39 cd03039 GST_N_Sigma_like GST_N 99.4 2.3E-13 4.9E-18 82.4 4.6 53 8-64 20-72 (72)
40 PF13417 GST_N_3: Glutathione 99.4 3.6E-13 7.8E-18 82.4 5.4 55 8-67 18-72 (75)
41 PF13409 GST_N_2: Glutathione 99.4 5.4E-13 1.2E-17 80.8 5.8 57 8-65 13-70 (70)
42 cd03060 GST_N_Omega_like GST_N 99.4 9.8E-13 2.1E-17 79.5 5.7 50 8-62 20-70 (71)
43 cd03051 GST_N_GTT2_like GST_N 99.4 8E-13 1.7E-17 79.5 5.1 54 8-63 20-74 (74)
44 cd03041 GST_N_2GST_N GST_N fam 99.4 9.1E-13 2E-17 81.0 5.2 55 8-66 21-77 (77)
45 PRK10387 glutaredoxin 2; Provi 99.3 5.9E-12 1.3E-16 89.7 7.0 72 8-88 20-94 (210)
46 cd03049 GST_N_3 GST_N family, 99.3 3.8E-12 8.3E-17 77.0 4.7 49 10-63 24-73 (73)
47 cd03080 GST_N_Metaxin_like GST 99.3 6.8E-12 1.5E-16 76.7 5.8 48 8-67 28-75 (75)
48 cd03055 GST_N_Omega GST_N fami 99.2 1.3E-11 2.8E-16 78.0 5.2 51 8-63 38-89 (89)
49 TIGR02182 GRXB Glutaredoxin, G 99.2 6.3E-11 1.4E-15 85.2 7.9 72 8-88 19-93 (209)
50 cd03037 GST_N_GRX2 GST_N famil 99.2 5.3E-11 1.1E-15 71.7 5.0 51 8-64 20-71 (71)
51 cd03040 GST_N_mPGES2 GST_N fam 99.1 1.7E-10 3.7E-15 70.4 5.2 53 8-67 21-77 (77)
52 cd03054 GST_N_Metaxin GST_N fa 99.0 5.1E-10 1.1E-14 67.6 5.4 46 8-65 27-72 (72)
53 cd00570 GST_N_family Glutathio 99.0 7.1E-10 1.5E-14 64.6 5.6 52 8-63 20-71 (71)
54 KOG4420|consensus 98.9 2.1E-09 4.6E-14 80.0 6.6 61 9-71 47-111 (325)
55 cd03079 GST_N_Metaxin2 GST_N f 98.9 2.1E-09 4.6E-14 66.2 5.0 47 8-65 28-74 (74)
56 PLN02907 glutamate-tRNA ligase 98.9 8E-09 1.7E-13 86.5 7.6 51 37-88 33-87 (722)
57 KOG1422|consensus 98.2 3.3E-05 7.3E-10 56.1 9.8 54 9-67 33-86 (221)
58 cd03078 GST_N_Metaxin1_like GS 98.0 1.7E-05 3.7E-10 48.4 5.6 29 37-65 44-72 (73)
59 TIGR02190 GlrX-dom Glutaredoxi 97.5 0.0002 4.3E-09 43.9 4.1 50 9-63 30-79 (79)
60 COG2999 GrxB Glutaredoxin 2 [P 97.2 0.0013 2.8E-08 47.1 6.0 90 9-108 21-122 (215)
61 KOG3029|consensus 97.2 0.0016 3.5E-08 49.6 6.9 49 10-65 112-160 (370)
62 PF10568 Tom37: Outer mitochon 96.6 0.0077 1.7E-07 36.7 5.2 26 37-62 45-71 (72)
63 cd03029 GRX_hybridPRX5 Glutare 96.5 0.0068 1.5E-07 36.1 4.6 50 9-63 23-72 (72)
64 PRK10638 glutaredoxin 3; Provi 96.5 0.0052 1.1E-07 37.7 4.2 52 8-63 23-74 (83)
65 TIGR02196 GlrX_YruB Glutaredox 96.2 0.0081 1.8E-07 34.9 3.7 50 9-62 22-73 (74)
66 KOG4244|consensus 95.6 0.08 1.7E-06 40.0 7.5 64 9-85 73-137 (281)
67 cd02976 NrdH NrdH-redoxin (Nrd 95.6 0.014 3.1E-07 33.8 3.0 42 9-54 22-63 (73)
68 cd03200 GST_C_JTV1 GST_C famil 95.2 0.027 5.9E-07 35.6 3.4 32 59-91 1-33 (96)
69 cd02066 GRX_family Glutaredoxi 95.0 0.049 1.1E-06 31.2 3.8 48 9-60 22-69 (72)
70 PRK10329 glutaredoxin-like pro 94.8 0.046 9.9E-07 33.7 3.4 40 9-53 23-62 (81)
71 PF11287 DUF3088: Protein of u 94.2 0.12 2.5E-06 34.2 4.4 51 14-68 44-109 (112)
72 cd03027 GRX_DEP Glutaredoxin ( 94.1 0.094 2E-06 31.1 3.7 44 9-56 23-66 (73)
73 COG0695 GrxC Glutaredoxin and 92.9 0.33 7.1E-06 29.8 4.8 45 8-54 22-66 (80)
74 TIGR02200 GlrX_actino Glutared 92.4 0.14 3.1E-06 30.0 2.6 46 8-56 21-67 (77)
75 cd03418 GRX_GRXb_1_3_like Glut 91.9 0.32 6.9E-06 28.6 3.7 50 9-62 22-72 (75)
76 PRK11200 grxA glutaredoxin 1; 91.9 0.56 1.2E-05 28.6 4.9 56 10-68 29-85 (85)
77 PF09635 MetRS-N: MetRS-N bind 91.6 0.11 2.5E-06 34.7 1.6 30 37-66 31-62 (122)
78 TIGR02181 GRX_bact Glutaredoxi 91.4 0.44 9.4E-06 28.5 4.0 52 9-64 21-72 (79)
79 KOG3027|consensus 90.0 1.1 2.4E-05 33.1 5.5 57 29-89 58-116 (257)
80 cd03419 GRX_GRXh_1_2_like Glut 89.9 0.82 1.8E-05 27.1 4.3 55 9-64 22-76 (82)
81 TIGR02183 GRXA Glutaredoxin, G 89.4 1.1 2.3E-05 27.6 4.6 54 11-67 29-83 (86)
82 TIGR02180 GRX_euk Glutaredoxin 88.9 1.1 2.4E-05 26.6 4.3 54 10-64 22-77 (84)
83 TIGR02194 GlrX_NrdH Glutaredox 88.6 0.49 1.1E-05 27.9 2.6 37 9-50 21-57 (72)
84 TIGR02189 GlrX-like_plant Glut 85.9 1.7 3.8E-05 27.6 4.1 51 9-60 30-80 (99)
85 PF00462 Glutaredoxin: Glutare 85.4 0.44 9.5E-06 27.0 1.0 40 9-52 21-60 (60)
86 COG0435 ECM4 Predicted glutath 80.1 2.1 4.5E-05 32.9 3.1 53 41-96 129-193 (324)
87 KOG3028|consensus 77.4 19 0.00041 27.9 7.6 50 37-87 45-99 (313)
88 cd03028 GRX_PICOT_like Glutare 75.4 7.6 0.00016 23.9 4.3 49 9-61 35-83 (90)
89 PHA03050 glutaredoxin; Provisi 71.0 9.8 0.00021 24.6 4.1 51 9-60 35-88 (108)
90 KOG2903|consensus 67.4 2.7 5.8E-05 32.1 1.0 53 41-96 123-191 (319)
91 PF09098 Dehyd-heme_bind: Quin 65.9 4.1 8.8E-05 28.8 1.6 18 54-71 55-72 (167)
92 TIGR00365 monothiol glutaredox 63.7 18 0.0004 22.7 4.2 48 9-60 39-86 (97)
93 cd03189 GST_C_GTT1_like GST_C 49.9 23 0.0005 22.2 3.0 23 70-93 2-25 (119)
94 cd03031 GRX_GRX_like Glutaredo 48.9 31 0.00067 23.7 3.6 48 9-60 28-79 (147)
95 TIGR02681 phage_pRha phage reg 47.9 24 0.00051 23.0 2.8 25 42-66 2-27 (108)
96 cd03030 GRX_SH3BGR Glutaredoxi 45.4 50 0.0011 20.7 4.0 46 9-57 28-76 (92)
97 KOG1752|consensus 42.0 75 0.0016 20.5 4.5 51 10-61 37-87 (104)
98 PRK09266 hypothetical protein; 37.3 23 0.00049 26.1 1.7 60 5-66 199-258 (266)
99 cd03208 GST_C_Alpha GST_C fami 36.1 85 0.0018 20.7 4.2 21 74-95 2-22 (137)
100 PF14420 Clr5: Clr5 domain 36.0 51 0.0011 18.5 2.7 27 56-83 24-50 (54)
101 PF09314 DUF1972: Domain of un 35.6 39 0.00084 24.1 2.6 19 49-67 155-173 (185)
102 KOG0388|consensus 33.0 79 0.0017 28.0 4.3 57 51-108 599-662 (1185)
103 TIGR01764 excise DNA binding d 31.8 79 0.0017 16.1 3.3 25 39-63 24-48 (49)
104 PF10850 DUF2653: Protein of u 31.0 48 0.001 21.1 2.1 18 55-72 11-28 (91)
105 cd03196 GST_C_5 GST_C family, 30.5 77 0.0017 20.0 3.2 15 72-87 3-17 (115)
106 KOG3248|consensus 29.1 1.3E+02 0.0027 24.0 4.5 58 49-109 213-275 (421)
107 cd03182 GST_C_GTT2_like GST_C 27.5 89 0.0019 19.2 3.1 19 72-91 1-20 (117)
108 PRK12759 bifunctional gluaredo 27.2 92 0.002 24.8 3.6 49 8-60 23-79 (410)
109 PF12728 HTH_17: Helix-turn-he 27.0 1.1E+02 0.0024 16.3 3.6 28 38-65 23-50 (51)
110 cd02973 TRX_GRX_like Thioredox 26.8 1.2E+02 0.0026 16.7 3.9 18 37-54 48-65 (67)
111 cd03210 GST_C_Pi GST_C family, 25.7 1.2E+02 0.0026 19.3 3.5 21 74-95 2-22 (126)
112 PRK10667 Hha toxicity attenuat 23.5 1E+02 0.0022 20.6 2.7 33 57-90 75-107 (122)
113 cd03192 GST_C_Sigma_like GST_C 23.4 82 0.0018 19.0 2.3 20 77-96 3-22 (104)
114 cd00449 PLPDE_IV PyridoxaL 5'- 22.8 47 0.001 24.0 1.2 58 6-65 196-255 (256)
115 cd03209 GST_C_Mu GST_C family, 22.1 82 0.0018 19.9 2.1 20 77-96 3-22 (121)
116 PF10757 YbaJ: Biofilm formati 21.7 1.4E+02 0.0029 20.0 3.0 34 57-91 75-108 (122)
117 PF00767 Poty_coat: Potyvirus 21.1 2.2E+02 0.0048 21.2 4.4 86 19-112 5-91 (237)
118 cd03203 GST_C_Lambda GST_C fam 20.9 1.2E+02 0.0025 19.3 2.7 19 72-91 1-19 (120)
No 1
>PRK15113 glutathione S-transferase; Provisional
Probab=99.80 E-value=3.4e-19 Score=128.28 Aligned_cols=82 Identities=16% Similarity=0.215 Sum_probs=74.1
Q ss_pred ccCCCcceEEEecCCCCCCCCchhhhcccCCCCCcCEEEECCeEeechHHHHHHHHHhhC------CCCCChHHHHHHHH
Q psy9879 8 IADNVKVRSQGVNTSLQRSVKIPFFALLDYPFGKVPCIEINGVQYHQSRAIGRYLARQAG------LYGMDGPEMDMKID 81 (115)
Q Consensus 8 ~~~gi~fe~~~v~~~~~~~~~~~~~~~~~nP~gqvPvL~~~g~~l~eS~AIl~YL~~~~~------l~p~d~~e~~a~v~ 81 (115)
.++||+||.+.+++. .+++..++|+++ ||+|+||+|++||.+|+||.||++||+++++ ++|.++.+ +++++
T Consensus 27 ~e~gi~~e~~~v~~~-~~~~~~~~~~~~-nP~g~VP~L~~~~~~l~ES~aI~~YL~~~~~~~~~~~l~p~~~~~-ra~~~ 103 (214)
T PRK15113 27 QEKGLPFELKTVDLD-AGEHLQPTYQGY-SLTRRVPTLQHDDFELSESSAIAEYLEERFAPPAWERIYPADLQA-RARAR 103 (214)
T ss_pred HHcCCCCeEEEeCCC-CccccCHHHHhc-CCCCCCCEEEECCEEEecHHHHHHHHHHHcCCCCccccCCCCHHH-HHHHH
Confidence 478999999999998 677788999988 8999999999999999999999999999995 88999999 99999
Q ss_pred HHHHHHH-HHHh
Q psy9879 82 MIVDTID-DMRQ 92 (115)
Q Consensus 82 ~~~~~~~-dl~~ 92 (115)
+|+.++. ++..
T Consensus 104 ~~~~~~~~~~~~ 115 (214)
T PRK15113 104 QIQAWLRSDLMP 115 (214)
T ss_pred HHHHHHHhhhHH
Confidence 9999884 6653
No 2
>PLN02473 glutathione S-transferase
Probab=99.76 E-value=4.4e-18 Score=121.89 Aligned_cols=79 Identities=28% Similarity=0.409 Sum_probs=71.5
Q ss_pred ccCCCcceEEEecCCCCCCCCchhhhcccCCCCCcCEEEECCeEeechHHHHHHHHHhhC-----CCCCChHHHHHHHHH
Q psy9879 8 IADNVKVRSQGVNTSLQRSVKIPFFALLDYPFGKVPCIEINGVQYHQSRAIGRYLARQAG-----LYGMDGPEMDMKIDM 82 (115)
Q Consensus 8 ~~~gi~fe~~~v~~~~~~~~~~~~~~~~~nP~gqvPvL~~~g~~l~eS~AIl~YL~~~~~-----l~p~d~~e~~a~v~~ 82 (115)
.++|++|+.+.+++. .+++++++|+++ ||+|+||+|+++|.+|+||.||++||+++++ |+|.++.+ ++++++
T Consensus 22 ~e~gi~ye~~~v~~~-~~~~~~~~~~~~-nP~g~vP~L~~~g~~l~ES~aI~~YL~~~~~~~~~~l~p~~~~~-ra~~~~ 98 (214)
T PLN02473 22 LEKGIEFEVIHVDLD-KLEQKKPEHLLR-QPFGQVPAIEDGDLKLFESRAIARYYATKYADQGTDLLGKTLEH-RAIVDQ 98 (214)
T ss_pred HHcCCCceEEEecCc-ccccCCHHHHhh-CCCCCCCeEEECCEEEEehHHHHHHHHHHcCCcCCCCCCCCHHH-HHHHHH
Confidence 468999999999998 677789999987 8999999999999999999999999999983 88989999 999999
Q ss_pred HHHHHHH
Q psy9879 83 IVDTIDD 89 (115)
Q Consensus 83 ~~~~~~d 89 (115)
|+.+..+
T Consensus 99 ~~~~~~~ 105 (214)
T PLN02473 99 WVEVENN 105 (214)
T ss_pred HHHHHHh
Confidence 9987754
No 3
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=99.75 E-value=5.9e-18 Score=121.61 Aligned_cols=75 Identities=19% Similarity=0.192 Sum_probs=67.9
Q ss_pred ccCCCcceEEEecCCCCCCCCchhhhcccCCCCCcCEEEECCeEeechHHHHHHHHHhhC---CCCCChHHHHHHHHHHH
Q psy9879 8 IADNVKVRSQGVNTSLQRSVKIPFFALLDYPFGKVPCIEINGVQYHQSRAIGRYLARQAG---LYGMDGPEMDMKIDMIV 84 (115)
Q Consensus 8 ~~~gi~fe~~~v~~~~~~~~~~~~~~~~~nP~gqvPvL~~~g~~l~eS~AIl~YL~~~~~---l~p~d~~e~~a~v~~~~ 84 (115)
.++|++||.+.|++. ++.++|+++ ||+|+||+|+++|.+|+||.||++||+++|+ |+|.++.+ ++++++|+
T Consensus 30 ~e~gl~~e~~~v~~~----~~~~~~~~~-nP~g~VPvL~~~g~~l~ES~AIl~YL~~~~~~~~l~p~~~~~-ra~~~~~~ 103 (211)
T PRK09481 30 AEKGVSVEIEQVEKD----NLPQDLIDL-NPYQSVPTLVDRELTLYESRIIMEYLDERFPHPPLMPVYPVA-RGESRLMM 103 (211)
T ss_pred HHCCCCCEEEeCCcc----cCCHHHHHh-CCCCCCCEEEECCEEeeCHHHHHHHHHHhCCCCCCCCCCHHH-HHHHHHHH
Confidence 478999999999986 467899988 8999999999999999999999999999995 88999999 99999998
Q ss_pred HHHH
Q psy9879 85 DTID 88 (115)
Q Consensus 85 ~~~~ 88 (115)
.++.
T Consensus 104 ~~~~ 107 (211)
T PRK09481 104 HRIE 107 (211)
T ss_pred HHHH
Confidence 8763
No 4
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=99.75 E-value=7e-18 Score=121.30 Aligned_cols=79 Identities=22% Similarity=0.176 Sum_probs=69.5
Q ss_pred cccCCCcceEEEecCCCCCCCCchhhhcccCCCCCcCEEEE-----CC--eEeechHHHHHHHHHhhC-CCCCChHHHHH
Q psy9879 7 SIADNVKVRSQGVNTSLQRSVKIPFFALLDYPFGKVPCIEI-----NG--VQYHQSRAIGRYLARQAG-LYGMDGPEMDM 78 (115)
Q Consensus 7 ~~~~gi~fe~~~v~~~~~~~~~~~~~~~~~nP~gqvPvL~~-----~g--~~l~eS~AIl~YL~~~~~-l~p~d~~e~~a 78 (115)
..++|++||.+.|++. .++++.++|+++ ||+|+||+|++ || .+|+||.||++||+++++ +.|.++.+ ++
T Consensus 19 L~e~gl~~e~~~v~~~-~~~~~~~~~~~i-NP~gkVP~L~~~~~~d~g~~~~L~ES~AI~~YL~~~~~~l~p~~~~~-ra 95 (215)
T PRK13972 19 LEEAELDYRLIKVDLG-KGGQFRPEFLRI-SPNNKIPAIVDHSPADGGEPLSLFESGAILLYLAEKTGLFLSHETRE-RA 95 (215)
T ss_pred HHHcCCCcEEEEecCc-ccccCCHHHHhh-CcCCCCCEEEeCCCCCCCCceeEEcHHHHHHHHHHhcCCCCCCCHHH-HH
Confidence 3678999999999997 667788999988 89999999997 45 589999999999999997 45778899 99
Q ss_pred HHHHHHHHHH
Q psy9879 79 KIDMIVDTID 88 (115)
Q Consensus 79 ~v~~~~~~~~ 88 (115)
++++|+.+..
T Consensus 96 ~~~~~~~~~~ 105 (215)
T PRK13972 96 ATLQWLFWQV 105 (215)
T ss_pred HHHHHHHHHh
Confidence 9999998874
No 5
>PLN02395 glutathione S-transferase
Probab=99.75 E-value=1e-17 Score=119.94 Aligned_cols=78 Identities=29% Similarity=0.373 Sum_probs=70.2
Q ss_pred ccCCCcceEEEecCCCCCCCCchhhhcccCCCCCcCEEEECCeEeechHHHHHHHHHhh-----CCCCCChHHHHHHHHH
Q psy9879 8 IADNVKVRSQGVNTSLQRSVKIPFFALLDYPFGKVPCIEINGVQYHQSRAIGRYLARQA-----GLYGMDGPEMDMKIDM 82 (115)
Q Consensus 8 ~~~gi~fe~~~v~~~~~~~~~~~~~~~~~nP~gqvPvL~~~g~~l~eS~AIl~YL~~~~-----~l~p~d~~e~~a~v~~ 82 (115)
.++|++|+.+.+++. .++++.++|+++ ||+|+||+|+++|.+|+||.||++||++++ +|+|.++.+ ++++++
T Consensus 21 ~e~gl~~e~~~v~~~-~~~~~~~~~~~~-nP~g~vP~L~~~~~~l~ES~aI~~YL~~~~~~~~~~l~p~~~~~-~~~~~~ 97 (215)
T PLN02395 21 IEKGVEFETVPVDLM-KGEHKQPEYLAL-QPFGVVPVIVDGDYKIFESRAIMRYYAEKYRSQGPDLLGKTIEE-RGQVEQ 97 (215)
T ss_pred HHcCCCceEEEeccc-cCCcCCHHHHhh-CCCCCCCEEEECCEEEEcHHHHHHHHHHHcCCCCcCcCCCChhH-HHHHHH
Confidence 368999999999987 566788999988 899999999999999999999999999997 389999999 999999
Q ss_pred HHHHHH
Q psy9879 83 IVDTID 88 (115)
Q Consensus 83 ~~~~~~ 88 (115)
|+.+.+
T Consensus 98 ~~~~~~ 103 (215)
T PLN02395 98 WLDVEA 103 (215)
T ss_pred HHHHHH
Confidence 998753
No 6
>KOG0867|consensus
Probab=99.74 E-value=8.7e-18 Score=122.79 Aligned_cols=80 Identities=31% Similarity=0.398 Sum_probs=74.4
Q ss_pred cccCCCcceEEEecCCCCCCCCchhhhcccCCCCCcCEEEECCeEeechHHHHHHHHHhhC-----CCCCChHHHHHHHH
Q psy9879 7 SIADNVKVRSQGVNTSLQRSVKIPFFALLDYPFGKVPCIEINGVQYHQSRAIGRYLARQAG-----LYGMDGPEMDMKID 81 (115)
Q Consensus 7 ~~~~gi~fe~~~v~~~~~~~~~~~~~~~~~nP~gqvPvL~~~g~~l~eS~AIl~YL~~~~~-----l~p~d~~e~~a~v~ 81 (115)
+.++|++||.+.|++. .+++++|+|+++ ||+|+||+|+|+|..++||.||++||+++|+ ++|.+..+ ++.++
T Consensus 21 ~~~~~l~~e~~~v~~~-~ge~~~pefl~~-nP~~kVP~l~d~~~~l~eS~AI~~Yl~~ky~~~~~~l~p~~~~~-ra~v~ 97 (226)
T KOG0867|consen 21 AKELGLEVELKPVDLV-KGEQKSPEFLKL-NPLGKVPALEDGGLTLWESHAILRYLAEKYGPLGGILLPKDLKE-RAIVD 97 (226)
T ss_pred HHHcCCceeEEEeecc-ccccCCHHHHhc-CcCCCCCeEecCCeEEeeHHHHHHHHHHHcCCCCcccCCcCHHH-HHHHH
Confidence 4689999999999999 899999999988 8999999999999999999999999999985 88999999 99999
Q ss_pred HHHHHHHH
Q psy9879 82 MIVDTIDD 89 (115)
Q Consensus 82 ~~~~~~~d 89 (115)
+|+.+.+.
T Consensus 98 ~~l~~~~~ 105 (226)
T KOG0867|consen 98 QWLEFENG 105 (226)
T ss_pred HHHHhhhc
Confidence 99988753
No 7
>PRK10542 glutathionine S-transferase; Provisional
Probab=99.71 E-value=5.8e-17 Score=114.83 Aligned_cols=85 Identities=16% Similarity=0.204 Sum_probs=70.1
Q ss_pred cccCCCcceEEEecCCCCCCCCchhhhcccCCCCCcCEEEE-CCeEeechHHHHHHHHHhhC---CC-CCChHHHHHHHH
Q psy9879 7 SIADNVKVRSQGVNTSLQRSVKIPFFALLDYPFGKVPCIEI-NGVQYHQSRAIGRYLARQAG---LY-GMDGPEMDMKID 81 (115)
Q Consensus 7 ~~~~gi~fe~~~v~~~~~~~~~~~~~~~~~nP~gqvPvL~~-~g~~l~eS~AIl~YL~~~~~---l~-p~d~~e~~a~v~ 81 (115)
..++||+|+.+.|++.....++.++|+++ ||+|+||+|++ ||.+|+||.||++||+++++ ++ |.++.+ +++++
T Consensus 18 L~~~gi~~e~~~v~~~~~~~~~~~~~~~~-nP~g~vPvL~~~~g~~l~eS~aI~~YL~~~~~~~~l~~p~~~~~-ra~~~ 95 (201)
T PRK10542 18 LRESGLDFTLVSVDLAKKRLENGDDYLAI-NPKGQVPALLLDDGTLLTEGVAIMQYLADSVPDRQLLAPVGSLS-RYHTI 95 (201)
T ss_pred HHHcCCCceEEEeecccccccCChHHHHh-CcCCCCCeEEeCCCcEeecHHHHHHHHHHhCcccccCCCCCcHH-HHHHH
Confidence 35789999999999972223466899988 89999999985 88999999999999999995 55 567889 99999
Q ss_pred HHHHHH-HHHHhh
Q psy9879 82 MIVDTI-DDMRQV 93 (115)
Q Consensus 82 ~~~~~~-~dl~~~ 93 (115)
+|+.+. .+++..
T Consensus 96 ~~~~~~~~~~~~~ 108 (201)
T PRK10542 96 EWLNYIATELHKG 108 (201)
T ss_pred HHHHHHHhhhhhh
Confidence 999877 455543
No 8
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=4.9e-17 Score=116.48 Aligned_cols=82 Identities=24% Similarity=0.203 Sum_probs=70.3
Q ss_pred ccCCCcceEEEecCCCCCCCCchhhhcccCCCCCcCEEEECCe-EeechHHHHHHHHHhhC---CCCCChH---HHHHHH
Q psy9879 8 IADNVKVRSQGVNTSLQRSVKIPFFALLDYPFGKVPCIEINGV-QYHQSRAIGRYLARQAG---LYGMDGP---EMDMKI 80 (115)
Q Consensus 8 ~~~gi~fe~~~v~~~~~~~~~~~~~~~~~nP~gqvPvL~~~g~-~l~eS~AIl~YL~~~~~---l~p~d~~---e~~a~v 80 (115)
.++|++|+.+.|++. . +++.++|+++ ||+|+||+|+++|. +|+||.||++||+++|+ ++|.++. + ++++
T Consensus 20 ~e~g~~ye~~~v~~~-~-~~~~~~~~~~-nP~gkVPvL~~~~~~~l~ES~AI~~YL~~~~~~~~l~p~~~~~r~~-r~~~ 95 (211)
T COG0625 20 EEKGLPYEIVLVDLD-A-EQKPPDFLAL-NPLGKVPALVDDDGEVLTESGAILEYLAERYPGPPLLPADPLARRA-RALL 95 (211)
T ss_pred HHcCCCceEEEeCcc-c-ccCCHHHHhc-CCCCCCCEEeeCCCCeeecHHHHHHHHHhhCCCCCcCCCCchhHHH-HHHH
Confidence 468999999999998 4 6788999988 89999999998665 89999999999999996 9998874 7 8888
Q ss_pred HHHHHHH-HHHHhh
Q psy9879 81 DMIVDTI-DDMRQV 93 (115)
Q Consensus 81 ~~~~~~~-~dl~~~ 93 (115)
.+|+.+. .+++..
T Consensus 96 ~~~~~~~~~~~~~~ 109 (211)
T COG0625 96 LWWLFFAASDLHPV 109 (211)
T ss_pred HHHHHHHHhcccHH
Confidence 8998877 344443
No 9
>KOG0868|consensus
Probab=99.69 E-value=6.4e-17 Score=114.07 Aligned_cols=77 Identities=25% Similarity=0.250 Sum_probs=69.7
Q ss_pred cCCCcceEEEecCCCCCCCCchhhhcccCCCCCcCEEEECCeEeechHHHHHHHHHhhC---CCCCChHHHHHHHHHHHH
Q psy9879 9 ADNVKVRSQGVNTSLQRSVKIPFFALLDYPFGKVPCIEINGVQYHQSRAIGRYLARQAG---LYGMDGPEMDMKIDMIVD 85 (115)
Q Consensus 9 ~~gi~fe~~~v~~~~~~~~~~~~~~~~~nP~gqvPvL~~~g~~l~eS~AIl~YL~~~~~---l~p~d~~e~~a~v~~~~~ 85 (115)
-+||+||.++|++...+++...+|.++ ||++|||+|++||.+|+||.||++||+++|+ |+|.|+.. ||.+++...
T Consensus 26 LK~iDYey~PvnLlk~~~q~~~ef~~i-NPm~kVP~L~i~g~tl~eS~AII~YLeEt~P~ppLLP~d~~K-RA~~r~i~~ 103 (217)
T KOG0868|consen 26 LKGIDYEYKPVNLLKEEDQSDSEFKEI-NPMEKVPTLVIDGLTLTESLAIIEYLEETYPDPPLLPKDPHK-RAKARAISL 103 (217)
T ss_pred HcCCCcceeehhhhcchhhhhhHHhhc-CchhhCCeEEECCEEeehHHHHHHHHHhcCCCCCCCCcCHHH-HHHHHHHHH
Confidence 479999999999984446677899988 8999999999999999999999999999995 99999999 999999887
Q ss_pred HH
Q psy9879 86 TI 87 (115)
Q Consensus 86 ~~ 87 (115)
.+
T Consensus 104 ~i 105 (217)
T KOG0868|consen 104 LI 105 (217)
T ss_pred HH
Confidence 76
No 10
>PRK11752 putative S-transferase; Provisional
Probab=99.69 E-value=1.6e-16 Score=118.33 Aligned_cols=75 Identities=16% Similarity=0.081 Sum_probs=67.7
Q ss_pred CCcceEEEecCCCCCCCCchhhhcccCCCCCcCEEEEC----CeEeechHHHHHHHHHhhC-CCCCChHHHHHHHHHHHH
Q psy9879 11 NVKVRSQGVNTSLQRSVKIPFFALLDYPFGKVPCIEIN----GVQYHQSRAIGRYLARQAG-LYGMDGPEMDMKIDMIVD 85 (115)
Q Consensus 11 gi~fe~~~v~~~~~~~~~~~~~~~~~nP~gqvPvL~~~----g~~l~eS~AIl~YL~~~~~-l~p~d~~e~~a~v~~~~~ 85 (115)
|++||.+.|++. .+++..++|+++ ||+||||+|+++ |++|+||.||++||+++|+ |+|.++.+ ++++++|+.
T Consensus 72 gl~ye~~~v~~~-~~~~~~~e~~~i-NP~GkVP~Lv~~dg~~~~~L~ES~AIl~YL~~~~~~L~P~~~~e-ra~v~~wl~ 148 (264)
T PRK11752 72 GAEYDAWLIRIG-EGDQFSSGFVEI-NPNSKIPALLDRSGNPPIRVFESGAILLYLAEKFGAFLPKDLAA-RTETLNWLF 148 (264)
T ss_pred CCceEEEEecCc-cccccCHHHHhh-CCCCCCCEEEeCCCCCCeEEEcHHHHHHHHHHhcCCcCCCCHHH-HHHHHHHHH
Confidence 889999999998 666788999988 899999999984 4799999999999999997 99999999 999999988
Q ss_pred HHH
Q psy9879 86 TID 88 (115)
Q Consensus 86 ~~~ 88 (115)
+..
T Consensus 149 ~~~ 151 (264)
T PRK11752 149 WQQ 151 (264)
T ss_pred HHh
Confidence 763
No 11
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=99.68 E-value=3.2e-16 Score=111.68 Aligned_cols=83 Identities=25% Similarity=0.287 Sum_probs=71.2
Q ss_pred cccCCCcceEEEecCCCCCCCCchhhhcccCCCCCcCEEEECCeEeechHHHHHHHHHhh---CCCCCChHHHHHHHHHH
Q psy9879 7 SIADNVKVRSQGVNTSLQRSVKIPFFALLDYPFGKVPCIEINGVQYHQSRAIGRYLARQA---GLYGMDGPEMDMKIDMI 83 (115)
Q Consensus 7 ~~~~gi~fe~~~v~~~~~~~~~~~~~~~~~nP~gqvPvL~~~g~~l~eS~AIl~YL~~~~---~l~p~d~~e~~a~v~~~ 83 (115)
..++||+|+.+.+++...++++.++|+++ ||+|+||+|+++|.+|+||.||++||++++ +++|.++.+ ++++++|
T Consensus 18 l~~~gi~~~~~~v~~~~~~~~~~~~~~~~-nP~g~vP~L~~~g~~l~ES~aI~~yl~~~~~~~~l~p~~~~~-~a~~~~~ 95 (210)
T TIGR01262 18 LALKGIDYEYVPVNLLRDGEQRSPEFLAL-NPQGLVPTLDIDGEVLTQSLAIIEYLEETYPDPPLLPADPIK-RARVRAL 95 (210)
T ss_pred HHHCCCCceEEecccccccccCChhhhhc-CCCCcCCEEEECCEEeecHHHHHHHHHHhCCCCCCCCCCHHH-HHHHHHH
Confidence 35789999999999752345567889877 899999999999999999999999999998 499999999 9999999
Q ss_pred HHHHH-HHH
Q psy9879 84 VDTID-DMR 91 (115)
Q Consensus 84 ~~~~~-dl~ 91 (115)
+.++. +++
T Consensus 96 ~~~~~~~~~ 104 (210)
T TIGR01262 96 ALLIACDIH 104 (210)
T ss_pred HHHHhcccC
Confidence 98874 443
No 12
>KOG1695|consensus
Probab=99.66 E-value=4.3e-16 Score=112.67 Aligned_cols=81 Identities=35% Similarity=0.482 Sum_probs=71.5
Q ss_pred ccCCCcceEEEecCCCCCCCCchhhhcccCCCCCcCEEEECCeEeechHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHH
Q psy9879 8 IADNVKVRSQGVNTSLQRSVKIPFFALLDYPFGKVPCIEINGVQYHQSRAIGRYLARQAGLYGMDGPEMDMKIDMIVDTI 87 (115)
Q Consensus 8 ~~~gi~fe~~~v~~~~~~~~~~~~~~~~~nP~gqvPvL~~~g~~l~eS~AIl~YL~~~~~l~p~d~~e~~a~v~~~~~~~ 87 (115)
+..|++||++++...+ .+++.+.. .|+||+|+|..||..|.||.||+|||+++||+.|+++.| +++++...+.+
T Consensus 23 ~~a~v~fEd~r~~~~~----~w~~~K~~-~pfgqlP~l~vDg~~i~QS~AI~RyLArk~gl~Gkt~~E-~a~vD~i~d~~ 96 (206)
T KOG1695|consen 23 AYAGVSFEDKRITMED----AWEELKDK-MPFGQLPVLEVDGKKLVQSRAILRYLARKFGLAGKTEEE-EAWVDMIVDQF 96 (206)
T ss_pred HhcCCCcceeeecccc----chhhhccc-CCCCCCCEEeECCEeeccHHHHHHHHHHHhCcCCCCHHH-HHHHHHHHHhh
Confidence 4579999999999872 15555533 799999999999999999999999999999999999999 99999999999
Q ss_pred HHHHhhc
Q psy9879 88 DDMRQVH 94 (115)
Q Consensus 88 ~dl~~~~ 94 (115)
.|++..+
T Consensus 97 ~D~~~~~ 103 (206)
T KOG1695|consen 97 KDFRWEI 103 (206)
T ss_pred hhHHHHH
Confidence 8888773
No 13
>KOG0406|consensus
Probab=99.64 E-value=2.3e-15 Score=110.16 Aligned_cols=77 Identities=18% Similarity=0.154 Sum_probs=70.5
Q ss_pred ccCCCcceEEEecCCCCCCCCchhhhcccCCCCCcCEEEECCeEeechHHHHHHHHHhhC----CCCCChHHHHHHHHHH
Q psy9879 8 IADNVKVRSQGVNTSLQRSVKIPFFALLDYPFGKVPCIEINGVQYHQSRAIGRYLARQAG----LYGMDGPEMDMKIDMI 83 (115)
Q Consensus 8 ~~~gi~fe~~~v~~~~~~~~~~~~~~~~~nP~gqvPvL~~~g~~l~eS~AIl~YL~~~~~----l~p~d~~e~~a~v~~~ 83 (115)
.++||+||.+.+|+. .+++.+++.|.|.+|||||+++|.+|+||..|++||++.++ ++|.||.+ ||+.+.|
T Consensus 29 ~~KgI~yE~veedl~----~Ks~~ll~~np~hkKVPvL~Hn~k~i~ESliiveYiDe~w~~~~~iLP~DPy~-Ra~arfw 103 (231)
T KOG0406|consen 29 KLKGIPYEYVEEDLT----NKSEWLLEKNPVHKKVPVLEHNGKPICESLIIVEYIDETWPSGPPILPSDPYE-RAQARFW 103 (231)
T ss_pred HhcCCceEEEecCCC----CCCHHHHHhccccccCCEEEECCceehhhHHHHHHHHhhccCCCCCCCCCHHH-HHHHHHH
Confidence 579999999999998 47888887744999999999999999999999999999984 99999999 9999999
Q ss_pred HHHHHH
Q psy9879 84 VDTIDD 89 (115)
Q Consensus 84 ~~~~~d 89 (115)
++++++
T Consensus 104 a~~id~ 109 (231)
T KOG0406|consen 104 AEYIDK 109 (231)
T ss_pred HHHHHh
Confidence 999975
No 14
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=99.63 E-value=7.1e-16 Score=95.00 Aligned_cols=55 Identities=36% Similarity=0.507 Sum_probs=48.4
Q ss_pred ccCCCcceEEEecCCCCCCCCchhhhcccCCC-CCcCEEEEC-CeEeechHHHHHHHHH
Q psy9879 8 IADNVKVRSQGVNTSLQRSVKIPFFALLDYPF-GKVPCIEIN-GVQYHQSRAIGRYLAR 64 (115)
Q Consensus 8 ~~~gi~fe~~~v~~~~~~~~~~~~~~~~~nP~-gqvPvL~~~-g~~l~eS~AIl~YL~~ 64 (115)
.++|++|+.+.+++. .+++++++|++. ||. ||||+|+++ |.+|+||.||++||++
T Consensus 20 ~~~gv~~e~~~v~~~-~~~~~~~e~~~~-~p~~g~vP~l~~~~~~~l~es~AI~~YLa~ 76 (76)
T PF02798_consen 20 AEKGVEYEDVRVDFE-KGEHKSPEFLAI-NPMFGKVPALEDGDGFVLTESNAILRYLAR 76 (76)
T ss_dssp HHTT--EEEEEEETT-TTGGGSHHHHHH-TTTSSSSSEEEETTTEEEESHHHHHHHHHH
T ss_pred HHhcccCceEEEecc-cccccchhhhhc-ccccceeeEEEECCCCEEEcHHHHHHHhCC
Confidence 478999999999998 677777999988 899 999999998 9999999999999986
No 15
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=99.61 E-value=2.5e-15 Score=91.97 Aligned_cols=58 Identities=29% Similarity=0.389 Sum_probs=51.2
Q ss_pred cccCCCcceEEEecCCCCCCCCchhhhcccCCCCCcCEEEECCeEeechHHHHHHHHHhh
Q psy9879 7 SIADNVKVRSQGVNTSLQRSVKIPFFALLDYPFGKVPCIEINGVQYHQSRAIGRYLARQA 66 (115)
Q Consensus 7 ~~~~gi~fe~~~v~~~~~~~~~~~~~~~~~nP~gqvPvL~~~g~~l~eS~AIl~YL~~~~ 66 (115)
..++|++|+.+.++.. .+++..++|++. ||+|+||+|+++|.+|+||.||++||+++|
T Consensus 19 l~~~g~~~~~~~v~~~-~~~~~~~~~~~~-~p~~~vP~L~~~~~~l~eS~aI~~Yl~~~~ 76 (76)
T cd03050 19 LKLNKIPFEECPIDLR-KGEQLTPEFKKI-NPFGKVPAIVDGDFTLAESVAILRYLARKF 76 (76)
T ss_pred HHHcCCCcEEEEecCC-CCCcCCHHHHHh-CcCCCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 3578999999999987 555667889877 899999999999999999999999999875
No 16
>PRK10357 putative glutathione S-transferase; Provisional
Probab=99.60 E-value=5.4e-15 Score=105.05 Aligned_cols=75 Identities=16% Similarity=0.193 Sum_probs=63.3
Q ss_pred ccCCCcceEEEecCCCCCCCCchhhhcccCCCCCcCEEE-ECCeEeechHHHHHHHHHhhC---CCCCChHHHHHHHHHH
Q psy9879 8 IADNVKVRSQGVNTSLQRSVKIPFFALLDYPFGKVPCIE-INGVQYHQSRAIGRYLARQAG---LYGMDGPEMDMKIDMI 83 (115)
Q Consensus 8 ~~~gi~fe~~~v~~~~~~~~~~~~~~~~~nP~gqvPvL~-~~g~~l~eS~AIl~YL~~~~~---l~p~d~~e~~a~v~~~ 83 (115)
.++|++|+.+.++.. . ..+++.+. ||+|+||+|+ ++|.+|+||.||++||+++++ |+|.++.+ ++++++|
T Consensus 20 ~~~gv~ye~~~~~~~-~---~~~~~~~~-nP~g~vP~L~~~~g~~l~eS~aI~~yL~~~~~~~~l~p~~~~~-~a~~~~~ 93 (202)
T PRK10357 20 LEKGITFEFVNELPY-N---ADNGVAQY-NPLGKVPALVTEEGECWFDSPIIAEYIELLNVAPAMLPRDPLA-ALRVRQL 93 (202)
T ss_pred HHcCCCCeEEecCCC-C---Cchhhhhc-CCccCCCeEEeCCCCeeecHHHHHHHHHHhCCCCCCCCCCHHH-HHHHHHH
Confidence 468999999998876 2 34566666 8999999998 578999999999999999984 89999999 9999999
Q ss_pred HHHHH
Q psy9879 84 VDTID 88 (115)
Q Consensus 84 ~~~~~ 88 (115)
..+..
T Consensus 94 ~~~~~ 98 (202)
T PRK10357 94 EALAD 98 (202)
T ss_pred HHHHH
Confidence 77653
No 17
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=99.60 E-value=4.2e-15 Score=90.45 Aligned_cols=59 Identities=22% Similarity=0.223 Sum_probs=52.5
Q ss_pred cccCCCcceEEEecCCCCCCCCchhhhcccCCCCCcCEEEECCeEeechHHHHHHHHHhhC
Q psy9879 7 SIADNVKVRSQGVNTSLQRSVKIPFFALLDYPFGKVPCIEINGVQYHQSRAIGRYLARQAG 67 (115)
Q Consensus 7 ~~~~gi~fe~~~v~~~~~~~~~~~~~~~~~nP~gqvPvL~~~g~~l~eS~AIl~YL~~~~~ 67 (115)
..++|++|+.+.++.. ++.++.++|++. ||+|++|+|+++|.+|+||.||++||+++|+
T Consensus 18 l~~~~i~~~~~~~~~~-~~~~~~~~~~~~-~p~~~vP~l~~~g~~l~es~aI~~yL~~~~~ 76 (76)
T cd03046 18 LEELGLPYELVLYDRG-PGEQAPPEYLAI-NPLGKVPVLVDGDLVLTESAAIILYLAEKYG 76 (76)
T ss_pred HHHcCCCcEEEEeCCC-CCccCCHHHHhc-CCCCCCCEEEECCEEEEcHHHHHHHHHHhCc
Confidence 3578999999999986 556678999987 8999999999999999999999999999874
No 18
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.59 E-value=3.1e-15 Score=91.56 Aligned_cols=55 Identities=20% Similarity=0.280 Sum_probs=49.7
Q ss_pred cccCCCcceEEEecCCCCCCCCchhhhcccCCCCCcCEEEECCeEeechHHHHHHHH
Q psy9879 7 SIADNVKVRSQGVNTSLQRSVKIPFFALLDYPFGKVPCIEINGVQYHQSRAIGRYLA 63 (115)
Q Consensus 7 ~~~~gi~fe~~~v~~~~~~~~~~~~~~~~~nP~gqvPvL~~~g~~l~eS~AIl~YL~ 63 (115)
..++|++|+.+.+++. .++++.++|+++ ||.|+||+|+++|.+|+||.||++||+
T Consensus 19 L~e~gl~~e~~~v~~~-~~~~~~~~~~~i-nP~g~vP~L~~~g~~l~Es~aI~~yLe 73 (73)
T cd03052 19 IAEKGLRCEEYDVSLP-LSEHNEPWFMRL-NPTGEVPVLIHGDNIICDPTQIIDYLE 73 (73)
T ss_pred HHHcCCCCEEEEecCC-cCccCCHHHHHh-CcCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 3578999999999997 566778899988 899999999999999999999999984
No 19
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=99.59 E-value=4.3e-15 Score=91.02 Aligned_cols=59 Identities=22% Similarity=0.247 Sum_probs=52.1
Q ss_pred cccCCCcceEEEecCCCCCCCCchhhhcccCCCCCcCEEEEC-CeEeechHHHHHHHHHhhC
Q psy9879 7 SIADNVKVRSQGVNTSLQRSVKIPFFALLDYPFGKVPCIEIN-GVQYHQSRAIGRYLARQAG 67 (115)
Q Consensus 7 ~~~~gi~fe~~~v~~~~~~~~~~~~~~~~~nP~gqvPvL~~~-g~~l~eS~AIl~YL~~~~~ 67 (115)
..++|++|+.+.++.. .++++.++|++. ||+|++|+|+++ |..++||.||++||+++|+
T Consensus 18 l~~~~i~~~~~~~~~~-~~~~~~~~~~~~-np~~~vP~l~~~~g~~l~eS~aI~~yL~~~~p 77 (77)
T cd03057 18 LEELGLPFELVRVDLR-TKTQKGADYLAI-NPKGQVPALVLDDGEVLTESAAILQYLADLHP 77 (77)
T ss_pred HHHcCCCceEEEEecc-cCccCCHhHHHh-CCCCCCCEEEECCCcEEEcHHHHHHHHHHhCc
Confidence 3578999999999987 556778999987 899999999986 8999999999999999863
No 20
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=99.58 E-value=4.7e-15 Score=92.68 Aligned_cols=58 Identities=21% Similarity=0.184 Sum_probs=47.6
Q ss_pred ccCCCcceEEEecCCCCCCCC-chhhhcccC----CCCCcCEEEECCeEeechHHHHHHHHHhh
Q psy9879 8 IADNVKVRSQGVNTSLQRSVK-IPFFALLDY----PFGKVPCIEINGVQYHQSRAIGRYLARQA 66 (115)
Q Consensus 8 ~~~gi~fe~~~v~~~~~~~~~-~~~~~~~~n----P~gqvPvL~~~g~~l~eS~AIl~YL~~~~ 66 (115)
.++|++|+.+.+++. .+++. .++|.+.+| |+|+||+|++||.+|+||.||++||+++|
T Consensus 20 ~~~gi~~e~~~v~~~-~~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~ES~AIl~YLa~~~ 82 (82)
T cd03075 20 EYTGEKYEEKRYELG-DAPDYDRSQWLNEKFKLGLDFPNLPYYIDGDVKLTQSNAILRYIARKH 82 (82)
T ss_pred HHcCCCcEEEEeccC-CccccchHhhhccchhcCCcCCCCCEEEECCEEEeehHHHHHHHhhcC
Confidence 468999999999987 44433 456654333 99999999999999999999999999875
No 21
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=99.57 E-value=6.2e-15 Score=89.37 Aligned_cols=55 Identities=29% Similarity=0.276 Sum_probs=49.6
Q ss_pred ccCCCcceEEEecCCCCCCCCchhhhcccCCCCCcCEEEECCeEeechHHHHHHHHH
Q psy9879 8 IADNVKVRSQGVNTSLQRSVKIPFFALLDYPFGKVPCIEINGVQYHQSRAIGRYLAR 64 (115)
Q Consensus 8 ~~~gi~fe~~~v~~~~~~~~~~~~~~~~~nP~gqvPvL~~~g~~l~eS~AIl~YL~~ 64 (115)
.++|++|+.+.+++. .++++.++|++. ||+|+||+|+++|..|+||.||++||++
T Consensus 20 ~~~gi~~e~~~i~~~-~~~~~~~~~~~~-~p~~~vP~l~~~~~~l~es~aI~~yL~~ 74 (74)
T cd03045 20 KALGLELNLKEVNLM-KGEHLKPEFLKL-NPQHTVPTLVDNGFVLWESHAILIYLVE 74 (74)
T ss_pred HHcCCCCEEEEecCc-cCCcCCHHHHhh-CcCCCCCEEEECCEEEEcHHHHHHHHhC
Confidence 578999999999987 566678999987 8999999999999999999999999974
No 22
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=99.57 E-value=8.5e-15 Score=90.58 Aligned_cols=58 Identities=26% Similarity=0.280 Sum_probs=51.6
Q ss_pred ccCCCcceEEEecCCCCCCCCchhhhcccCCCCCcCEEEEC---CeEeechHHHHHHHHHhhC
Q psy9879 8 IADNVKVRSQGVNTSLQRSVKIPFFALLDYPFGKVPCIEIN---GVQYHQSRAIGRYLARQAG 67 (115)
Q Consensus 8 ~~~gi~fe~~~v~~~~~~~~~~~~~~~~~nP~gqvPvL~~~---g~~l~eS~AIl~YL~~~~~ 67 (115)
.++|++|+.+.+++. .++++.++|++. ||+|+||+|+++ |..|+||.||++||+++|+
T Consensus 20 ~~~gl~~~~~~~~~~-~~~~~~~~~~~~-~p~~~vP~l~~~~~~g~~l~eS~aI~~yL~~~~~ 80 (81)
T cd03048 20 EELGLPYEIHPVDIS-KGEQKKPEFLKI-NPNGRIPAIVDHNGTPLTVFESGAILLYLAEKYD 80 (81)
T ss_pred HHcCCCcEEEEecCc-CCcccCHHHHHh-CcCCCCCEEEeCCCCceEEEcHHHHHHHHHHHhC
Confidence 468999999999986 556678999987 899999999996 8999999999999999875
No 23
>PLN02378 glutathione S-transferase DHAR1
Probab=99.54 E-value=1.4e-13 Score=99.26 Aligned_cols=72 Identities=19% Similarity=0.118 Sum_probs=59.9
Q ss_pred ccCCCcceEEEecCCCCCCCCchhhhcccCCCCCcCEEEECCeEeechHHHHHHHHHhhCCC-CCChHHHHHHHHHHHH
Q psy9879 8 IADNVKVRSQGVNTSLQRSVKIPFFALLDYPFGKVPCIEINGVQYHQSRAIGRYLARQAGLY-GMDGPEMDMKIDMIVD 85 (115)
Q Consensus 8 ~~~gi~fe~~~v~~~~~~~~~~~~~~~~~nP~gqvPvL~~~g~~l~eS~AIl~YL~~~~~l~-p~d~~e~~a~v~~~~~ 85 (115)
.++|++|+.+.||+. .+.++|+++ ||+|+||+|+++|.+|+||.||++||+++|+-. ..++.+ ++++++.+.
T Consensus 31 ~e~gl~~e~~~v~~~----~~~~~~l~i-nP~G~VPvL~~~~~~l~ES~aI~~YL~~~~~~~~l~~~~~-~a~i~~~~~ 103 (213)
T PLN02378 31 EEKSLTYKIHLINLS----DKPQWFLDI-SPQGKVPVLKIDDKWVTDSDVIVGILEEKYPDPPLKTPAE-FASVGSNIF 103 (213)
T ss_pred HHcCCCCeEEEeCcc----cCCHHHHHh-CCCCCCCEEEECCEEecCHHHHHHHHHHhCCCCCCCCHHH-HHHHHHHHH
Confidence 578999999999997 356789988 899999999999999999999999999998521 146677 887776543
No 24
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.53 E-value=2.5e-14 Score=86.38 Aligned_cols=55 Identities=25% Similarity=0.286 Sum_probs=49.0
Q ss_pred cccCCCcceEEEecCCCCCCCCchhhhcccCCCCCcCEEEECCeEeechHHHHHHHHHhh
Q psy9879 7 SIADNVKVRSQGVNTSLQRSVKIPFFALLDYPFGKVPCIEINGVQYHQSRAIGRYLARQA 66 (115)
Q Consensus 7 ~~~~gi~fe~~~v~~~~~~~~~~~~~~~~~nP~gqvPvL~~~g~~l~eS~AIl~YL~~~~ 66 (115)
..++|++|+.+.++.. ++.++|++. ||+|++|+|+++|..++||.||++||+++|
T Consensus 19 l~~~gi~~~~~~v~~~----~~~~~~~~~-~p~~~vP~l~~~~~~l~es~aI~~yL~~~~ 73 (73)
T cd03059 19 LAEKGVSVEIIDVDPD----NPPEDLAEL-NPYGTVPTLVDRDLVLYESRIIMEYLDERF 73 (73)
T ss_pred HHHcCCccEEEEcCCC----CCCHHHHhh-CCCCCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 3578999999999876 467899988 899999999999999999999999999875
No 25
>PTZ00057 glutathione s-transferase; Provisional
Probab=99.53 E-value=8.8e-14 Score=99.58 Aligned_cols=82 Identities=22% Similarity=0.365 Sum_probs=60.0
Q ss_pred ccCCCcceEEEecCCCCCCC--Cchhhh--cccCCCCCcCEEEECCeEeechHHHHHHHHHhhCCCCCChHHHHHHHHHH
Q psy9879 8 IADNVKVRSQGVNTSLQRSV--KIPFFA--LLDYPFGKVPCIEINGVQYHQSRAIGRYLARQAGLYGMDGPEMDMKIDMI 83 (115)
Q Consensus 8 ~~~gi~fe~~~v~~~~~~~~--~~~~~~--~~~nP~gqvPvL~~~g~~l~eS~AIl~YL~~~~~l~p~d~~e~~a~v~~~ 83 (115)
.++|++|+.+.++.. ++. ..++++ +. ||+|+||+|++||.+|+||.||++||+++|++.|.+..+ ++.++..
T Consensus 24 ~~~gi~ye~~~~~~~--~~~~~~~~~~~~~~~-nP~g~vP~L~~~~~~l~eS~AI~~YLa~~~~~~~~~~~~-~~~~~~~ 99 (205)
T PTZ00057 24 AYLGIEYTDKRFGEN--GDAFIEFKNFKKEKD-TPFEQVPILEMDNIIFAQSQAIVRYLSKKYKICGESELN-EFYADMI 99 (205)
T ss_pred HHcCCCeEEEecccc--chHHHHHHhccccCC-CCCCCCCEEEECCEEEecHHHHHHHHHHHcCCCCCCHHH-HHHHHHH
Confidence 578999999977432 111 112222 24 899999999999999999999999999999988877666 6666655
Q ss_pred HHHHHHHHhh
Q psy9879 84 VDTIDDMRQV 93 (115)
Q Consensus 84 ~~~~~dl~~~ 93 (115)
...+.+++..
T Consensus 100 ~~~~~~~~~~ 109 (205)
T PTZ00057 100 FCGVQDIHYK 109 (205)
T ss_pred HHHHHHHHHH
Confidence 5554566543
No 26
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=99.53 E-value=2.3e-14 Score=87.11 Aligned_cols=54 Identities=26% Similarity=0.308 Sum_probs=47.9
Q ss_pred ccCCCcceEEEecCCCCCCCCchhhhcccCCCCCcCEEEECCeEeechHHHHHHHH
Q psy9879 8 IADNVKVRSQGVNTSLQRSVKIPFFALLDYPFGKVPCIEINGVQYHQSRAIGRYLA 63 (115)
Q Consensus 8 ~~~gi~fe~~~v~~~~~~~~~~~~~~~~~nP~gqvPvL~~~g~~l~eS~AIl~YL~ 63 (115)
.++|++|+.+.++.. .++++.++|++. ||+|+||+|+++|..|+||.||++||+
T Consensus 20 ~~~~l~~~~~~~~~~-~~~~~~~~~~~~-nP~~~vP~L~~~~~~l~eS~aI~~YL~ 73 (73)
T cd03047 20 DELGLPYERIDAGGQ-FGGLDTPEFLAM-NPNGRVPVLEDGDFVLWESNAILRYLA 73 (73)
T ss_pred HHcCCCCEEEEeccc-cccccCHHHHhh-CCCCCCCEEEECCEEEECHHHHHHHhC
Confidence 578999999999876 455678899988 899999999999999999999999984
No 27
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=99.53 E-value=3e-14 Score=86.84 Aligned_cols=56 Identities=30% Similarity=0.445 Sum_probs=49.6
Q ss_pred ccCCCcceEEEecCCCCCCCCchhhhcccCCCCCcCEEEECCeEeechHHHHHHHHHh
Q psy9879 8 IADNVKVRSQGVNTSLQRSVKIPFFALLDYPFGKVPCIEINGVQYHQSRAIGRYLARQ 65 (115)
Q Consensus 8 ~~~gi~fe~~~v~~~~~~~~~~~~~~~~~nP~gqvPvL~~~g~~l~eS~AIl~YL~~~ 65 (115)
.++|++|+.+.++.. .++++.++|++. ||+|++|+|+++|..++||.||++||+++
T Consensus 21 ~~~~i~~~~~~~~~~-~~~~~~~~~~~~-~P~~~vP~l~~~g~~l~es~aI~~yL~~~ 76 (76)
T cd03053 21 EEKGVDYELVPVDLT-KGEHKSPEHLAR-NPFGQIPALEDGDLKLFESRAITRYLAEK 76 (76)
T ss_pred HHcCCCcEEEEeCcc-ccccCCHHHHhh-CCCCCCCEEEECCEEEEcHHHHHHHHhhC
Confidence 578999999999987 455677889987 89999999999999999999999999874
No 28
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=99.51 E-value=4.1e-14 Score=90.46 Aligned_cols=55 Identities=18% Similarity=0.119 Sum_probs=49.5
Q ss_pred ccCCCcceEEEecCCCCCCCCchhhhcccCCCCCcCEEEECCeEeechHHHHHHHHHhhC
Q psy9879 8 IADNVKVRSQGVNTSLQRSVKIPFFALLDYPFGKVPCIEINGVQYHQSRAIGRYLARQAG 67 (115)
Q Consensus 8 ~~~gi~fe~~~v~~~~~~~~~~~~~~~~~nP~gqvPvL~~~g~~l~eS~AIl~YL~~~~~ 67 (115)
.++||+|+.+.+|.. .+.++|+++ ||+|+||+|+++|.+|+||.+|++||++++.
T Consensus 33 ~eKgi~ye~~~vd~~----~~p~~~~~~-nP~g~vPvL~~~~~~i~eS~~I~eYLde~~~ 87 (91)
T cd03061 33 WLKGVVFNVTTVDMK----RKPEDLKDL-APGTQPPFLLYNGEVKTDNNKIEEFLEETLC 87 (91)
T ss_pred HHCCCceEEEEeCCC----CCCHHHHHh-CCCCCCCEEEECCEEecCHHHHHHHHHHHcc
Confidence 478999999999987 345789878 8999999999999999999999999999863
No 29
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.49 E-value=6.4e-14 Score=84.36 Aligned_cols=54 Identities=30% Similarity=0.388 Sum_probs=48.5
Q ss_pred ccCCCcceEEEecCCCCCCCCchhhhcccCCCCCcCEEEECCeEeechHHHHHHHH
Q psy9879 8 IADNVKVRSQGVNTSLQRSVKIPFFALLDYPFGKVPCIEINGVQYHQSRAIGRYLA 63 (115)
Q Consensus 8 ~~~gi~fe~~~v~~~~~~~~~~~~~~~~~nP~gqvPvL~~~g~~l~eS~AIl~YL~ 63 (115)
.++|++|+.+.+++. .++++.++|++. ||+|++|+|+++|..++||.||++||+
T Consensus 20 ~~~~~~~~~~~i~~~-~~~~~~~~~~~~-~p~~~vP~l~~~~~~i~es~aI~~yl~ 73 (73)
T cd03056 20 ALLGIPYEWVEVDIL-KGETRTPEFLAL-NPNGEVPVLELDGRVLAESNAILVYLA 73 (73)
T ss_pred HHcCCCcEEEEecCC-CcccCCHHHHHh-CCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 568999999999986 556778999987 899999999999999999999999984
No 30
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=99.49 E-value=5.7e-14 Score=85.89 Aligned_cols=54 Identities=30% Similarity=0.459 Sum_probs=48.0
Q ss_pred ccCCCcceEEEecCCCCCCCCchhhhcccCCCCCcCEEEE-CCeEeechHHHHHHHHH
Q psy9879 8 IADNVKVRSQGVNTSLQRSVKIPFFALLDYPFGKVPCIEI-NGVQYHQSRAIGRYLAR 64 (115)
Q Consensus 8 ~~~gi~fe~~~v~~~~~~~~~~~~~~~~~nP~gqvPvL~~-~g~~l~eS~AIl~YL~~ 64 (115)
.++|++|+.+.+++. .+ ++.++|+++ ||+|++|+|++ +|.+|+||.||++||++
T Consensus 20 ~~~gi~~~~~~v~~~-~~-~~~~~~~~~-nP~~~vP~L~~~~g~~l~es~aI~~yL~~ 74 (75)
T cd03044 20 KYNGLDVEIVDFQPG-KE-NKTPEFLKK-FPLGKVPAFEGADGFCLFESNAIAYYVAN 74 (75)
T ss_pred HHcCCceEEEecccc-cc-cCCHHHHHh-CCCCCCCEEEcCCCCEEeeHHHHHHHHhh
Confidence 468999999999986 33 678999988 89999999997 58999999999999986
No 31
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=99.48 E-value=8.5e-14 Score=83.92 Aligned_cols=54 Identities=30% Similarity=0.335 Sum_probs=48.4
Q ss_pred ccCCCcceEEEecCCCCCCCCchhhhcccCCCCCcCEEEECCeEeechHHHHHHHH
Q psy9879 8 IADNVKVRSQGVNTSLQRSVKIPFFALLDYPFGKVPCIEINGVQYHQSRAIGRYLA 63 (115)
Q Consensus 8 ~~~gi~fe~~~v~~~~~~~~~~~~~~~~~nP~gqvPvL~~~g~~l~eS~AIl~YL~ 63 (115)
.++|++|+.+.+++. .++++.++|++. ||.|++|+|+++|..++||.||++||+
T Consensus 20 ~~~gi~~~~~~~~~~-~~~~~~~~~~~~-~p~~~vP~l~~~~~~l~es~aI~~yL~ 73 (73)
T cd03042 20 NLKGLDYEYVPVNLL-KGEQLSPAYRAL-NPQGLVPTLVIDGLVLTQSLAIIEYLD 73 (73)
T ss_pred HHcCCCCeEEEecCc-cCCcCChHHHHh-CCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 578999999999987 555678999987 899999999999999999999999984
No 32
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=99.48 E-value=5e-14 Score=85.89 Aligned_cols=53 Identities=23% Similarity=0.275 Sum_probs=45.9
Q ss_pred ccCCCcceEEEecCCCCCCCCchhhhcccCCCCCcCEEEECCeEeechHHHHHHHHHh
Q psy9879 8 IADNVKVRSQGVNTSLQRSVKIPFFALLDYPFGKVPCIEINGVQYHQSRAIGRYLARQ 65 (115)
Q Consensus 8 ~~~gi~fe~~~v~~~~~~~~~~~~~~~~~nP~gqvPvL~~~g~~l~eS~AIl~YL~~~ 65 (115)
.++|++|+.+.++.. +..++|++. ||+|+||+|+++|.+++||.||++||+++
T Consensus 21 ~~~~i~~e~~~v~~~----~~~~~~~~~-~p~~~vP~l~~~~~~l~es~aI~~yL~~~ 73 (73)
T cd03076 21 ADQGISWEEERVTYE----EWQESLKPK-MLFGQLPCFKDGDLTLVQSNAILRHLGRK 73 (73)
T ss_pred HHcCCCCEEEEecHH----Hhhhhhhcc-CCCCCCCEEEECCEEEEcHHHHHHHHhcC
Confidence 468999999999874 345578877 89999999999999999999999999863
No 33
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=99.48 E-value=9.2e-13 Score=98.51 Aligned_cols=72 Identities=18% Similarity=0.168 Sum_probs=60.8
Q ss_pred ccCCCcceEEEecCCCCCCCCchhhhcccCCCCCcCEEEECCeEeechHHHHHHHHHhhCC-CCCChHHHHHHHHHHHH
Q psy9879 8 IADNVKVRSQGVNTSLQRSVKIPFFALLDYPFGKVPCIEINGVQYHQSRAIGRYLARQAGL-YGMDGPEMDMKIDMIVD 85 (115)
Q Consensus 8 ~~~gi~fe~~~v~~~~~~~~~~~~~~~~~nP~gqvPvL~~~g~~l~eS~AIl~YL~~~~~l-~p~d~~e~~a~v~~~~~ 85 (115)
.++|++|+.+.|++. .+.++|+++ ||+|+||+|+++|.+|+||.||++||+++|+- ...++.+ ++.+++|+.
T Consensus 84 ~ekgi~ye~~~vdl~----~~~~~fl~i-NP~GkVPvL~~d~~~L~ES~aI~~YL~e~~p~~~L~~~~e-ra~i~~~l~ 156 (265)
T PLN02817 84 EEKHLPYDMKLVDLT----NKPEWFLKI-SPEGKVPVVKLDEKWVADSDVITQALEEKYPDPPLATPPE-KASVGSKIF 156 (265)
T ss_pred HHcCCCCEEEEeCcC----cCCHHHHhh-CCCCCCCEEEECCEEEecHHHHHHHHHHHCCCCCCCCHHH-HHHHHHHHH
Confidence 468999999999987 357889988 89999999999889999999999999999951 1136788 888887653
No 34
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=99.47 E-value=3.8e-13 Score=99.17 Aligned_cols=55 Identities=16% Similarity=0.075 Sum_probs=50.5
Q ss_pred ccCCCcceEEEecCCCCCCCCchhhhcccCCCCCcCEEEECCeEeechHHHHHHHHHhhC
Q psy9879 8 IADNVKVRSQGVNTSLQRSVKIPFFALLDYPFGKVPCIEINGVQYHQSRAIGRYLARQAG 67 (115)
Q Consensus 8 ~~~gi~fe~~~v~~~~~~~~~~~~~~~~~nP~gqvPvL~~~g~~l~eS~AIl~YL~~~~~ 67 (115)
.++|++|+.+.||+. .+.++|+++ ||+|+||+|+++|.+|+||.||++||+++|+
T Consensus 30 ~ekgi~~e~~~vd~~----~~~~~fl~i-nP~g~vPvL~~~g~~l~ES~aI~eYL~e~~~ 84 (236)
T TIGR00862 30 WLKGVVFNVTTVDLK----RKPEDLQNL-APGTHPPFLTYNTEVKTDVNKIEEFLEETLC 84 (236)
T ss_pred HHcCCCcEEEEECCC----CCCHHHHHH-CcCCCCCEEEECCEEeecHHHHHHHHHHHcC
Confidence 468999999999998 357899988 8999999999999999999999999999984
No 35
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=99.47 E-value=1.4e-13 Score=85.31 Aligned_cols=55 Identities=31% Similarity=0.484 Sum_probs=44.7
Q ss_pred ccCCCcceEEEecCCCCCCCCchhhhcc----cCCCCCcCEEEECCeEeechHHHHHHHHHhhCCC
Q psy9879 8 IADNVKVRSQGVNTSLQRSVKIPFFALL----DYPFGKVPCIEINGVQYHQSRAIGRYLARQAGLY 69 (115)
Q Consensus 8 ~~~gi~fe~~~v~~~~~~~~~~~~~~~~----~nP~gqvPvL~~~g~~l~eS~AIl~YL~~~~~l~ 69 (115)
.+.|++|+.+.++.. ++|.+. .+|+|+||+|++||.+|+||.||++||+++||++
T Consensus 21 ~~~gi~~e~~~v~~~-------~~~~~~~~~~~~~~g~vP~L~~~g~~l~ES~AI~~YL~~~~~~~ 79 (79)
T cd03077 21 AAAGVEFEEKFIESA-------EDLEKLKKDGSLMFQQVPMVEIDGMKLVQTRAILNYIAGKYNLY 79 (79)
T ss_pred HHcCCCcEEEEeccH-------HHHHhhccccCCCCCCCCEEEECCEEEeeHHHHHHHHHHHcCCC
Confidence 578999999999874 122211 1479999999999999999999999999999864
No 36
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.46 E-value=1.5e-13 Score=83.88 Aligned_cols=54 Identities=26% Similarity=0.202 Sum_probs=47.1
Q ss_pred cccCCCcceEEEecCCCCCCCCchhhhcccCCCCCcCEEEECCeEeechHHHHHHHH
Q psy9879 7 SIADNVKVRSQGVNTSLQRSVKIPFFALLDYPFGKVPCIEINGVQYHQSRAIGRYLA 63 (115)
Q Consensus 7 ~~~~gi~fe~~~v~~~~~~~~~~~~~~~~~nP~gqvPvL~~~g~~l~eS~AIl~YL~ 63 (115)
..++|++|+.+.+++. .+ ++.++|++. ||+|++|+|+++|.+|+||.||++||+
T Consensus 20 L~~~gl~~e~~~v~~~-~~-~~~~~~~~~-nP~g~vP~L~~~g~~l~eS~aI~~YL~ 73 (73)
T cd03043 20 LKAAGIPFEEILVPLY-TP-DTRARILEF-SPTGKVPVLVDGGIVVWDSLAICEYLA 73 (73)
T ss_pred HHHcCCCCEEEEeCCC-Cc-cccHHHHhh-CCCCcCCEEEECCEEEEcHHHHHHHhC
Confidence 3578999999999987 33 356899877 899999999999999999999999984
No 37
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=99.45 E-value=2.5e-13 Score=82.63 Aligned_cols=54 Identities=19% Similarity=0.167 Sum_probs=47.5
Q ss_pred ccCCCcceEEEecCCCCCCCCchhhhcccCCC-CCcCEEEECCeEeechHHHHHHHHHhh
Q psy9879 8 IADNVKVRSQGVNTSLQRSVKIPFFALLDYPF-GKVPCIEINGVQYHQSRAIGRYLARQA 66 (115)
Q Consensus 8 ~~~gi~fe~~~v~~~~~~~~~~~~~~~~~nP~-gqvPvL~~~g~~l~eS~AIl~YL~~~~ 66 (115)
.++|++|+.+.++.. ++.++|++. ||. |++|+|+++|.+++||.||++||++++
T Consensus 20 ~~~gl~~~~~~~~~~----~~~~~~~~~-~p~~~~vP~l~~~~~~l~eS~aI~~yL~~~~ 74 (74)
T cd03058 20 ALKGVPYEYVEEDLG----NKSELLLAS-NPVHKKIPVLLHNGKPICESLIIVEYIDEAW 74 (74)
T ss_pred HHcCCCCEEEEeCcc----cCCHHHHHh-CCCCCCCCEEEECCEEeehHHHHHHHHHhhC
Confidence 468999999998876 467888877 895 999999999999999999999999864
No 38
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=99.43 E-value=3.3e-13 Score=84.12 Aligned_cols=57 Identities=19% Similarity=0.104 Sum_probs=47.6
Q ss_pred ccCCCcceEEEecCCCCCCCCchhhhcccCCCCCcCEEEEC-CeEeechHHHHHHHHHhhC
Q psy9879 8 IADNVKVRSQGVNTSLQRSVKIPFFALLDYPFGKVPCIEIN-GVQYHQSRAIGRYLARQAG 67 (115)
Q Consensus 8 ~~~gi~fe~~~v~~~~~~~~~~~~~~~~~nP~gqvPvL~~~-g~~l~eS~AIl~YL~~~~~ 67 (115)
.++|++|+.+.++.. .+++..+++ +. ||.|++|+|+++ |.+++||.||++||+++|+
T Consensus 27 ~~~~i~~~~~~~~~~-~~~~~~~~~-~~-~p~~~vP~L~~~~~~~l~eS~aI~~yL~~~~p 84 (84)
T cd03038 27 NHKGLEYKTVPVEFP-DIPPILGEL-TS-GGFYTVPVIVDGSGEVIGDSFAIAEYLEEAYP 84 (84)
T ss_pred HhCCCCCeEEEecCC-Ccccccccc-cC-CCCceeCeEEECCCCEEeCHHHHHHHHHHhCc
Confidence 578999999999976 333344555 56 899999999998 8999999999999999863
No 39
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=99.42 E-value=2.3e-13 Score=82.37 Aligned_cols=53 Identities=32% Similarity=0.450 Sum_probs=45.1
Q ss_pred ccCCCcceEEEecCCCCCCCCchhhhcccCCCCCcCEEEECCeEeechHHHHHHHHH
Q psy9879 8 IADNVKVRSQGVNTSLQRSVKIPFFALLDYPFGKVPCIEINGVQYHQSRAIGRYLAR 64 (115)
Q Consensus 8 ~~~gi~fe~~~v~~~~~~~~~~~~~~~~~nP~gqvPvL~~~g~~l~eS~AIl~YL~~ 64 (115)
.++|++|+.+.++.. . +..++|.+. ||+|++|+|+++|..|+||.||++||++
T Consensus 20 ~~~gi~~e~~~~~~~-~--~~~~~~~~~-~p~~~vP~L~~~~~~l~es~aI~~yL~~ 72 (72)
T cd03039 20 ADAGVEYEDVRITYE-E--WPELDLKPT-LPFGQLPVLEIDGKKLTQSNAILRYLAR 72 (72)
T ss_pred HHCCCCcEEEEeCHH-H--hhhhhhccC-CcCCCCCEEEECCEEEEecHHHHHHhhC
Confidence 578999999999875 2 233558767 8999999999999999999999999974
No 40
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=99.42 E-value=3.6e-13 Score=82.41 Aligned_cols=55 Identities=29% Similarity=0.314 Sum_probs=49.3
Q ss_pred ccCCCcceEEEecCCCCCCCCchhhhcccCCCCCcCEEEECCeEeechHHHHHHHHHhhC
Q psy9879 8 IADNVKVRSQGVNTSLQRSVKIPFFALLDYPFGKVPCIEINGVQYHQSRAIGRYLARQAG 67 (115)
Q Consensus 8 ~~~gi~fe~~~v~~~~~~~~~~~~~~~~~nP~gqvPvL~~~g~~l~eS~AIl~YL~~~~~ 67 (115)
-++||+|+.+.++.. .+.++|++. ||.|+||+|+++|..++||.+|++||+++|+
T Consensus 18 ~~~~i~~~~~~v~~~----~~~~~~~~~-~p~~~vPvL~~~g~~l~dS~~I~~yL~~~~~ 72 (75)
T PF13417_consen 18 EEKGIPYELVPVDPE----EKRPEFLKL-NPKGKVPVLVDDGEVLTDSAAIIEYLEERYP 72 (75)
T ss_dssp HHHTEEEEEEEEBTT----STSHHHHHH-STTSBSSEEEETTEEEESHHHHHHHHHHHST
T ss_pred HHcCCeEEEeccCcc----cchhHHHhh-cccccceEEEECCEEEeCHHHHHHHHHHHcC
Confidence 468999999999977 347888877 7999999999999999999999999999985
No 41
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=99.41 E-value=5.4e-13 Score=80.84 Aligned_cols=57 Identities=30% Similarity=0.306 Sum_probs=47.5
Q ss_pred ccCCCcceEEEecCCCCCCCCchhhhcccCCCCCcCEEEE-CCeEeechHHHHHHHHHh
Q psy9879 8 IADNVKVRSQGVNTSLQRSVKIPFFALLDYPFGKVPCIEI-NGVQYHQSRAIGRYLARQ 65 (115)
Q Consensus 8 ~~~gi~fe~~~v~~~~~~~~~~~~~~~~~nP~gqvPvL~~-~g~~l~eS~AIl~YL~~~ 65 (115)
.++|++|+...+.....+..+.++|.+. ||.|+||+|++ +|.+++||.+|++||+++
T Consensus 13 ~~~gl~~~~~~v~~~~~~~~~~~~~~~~-~p~~~VP~L~~~~g~vi~eS~~I~~yL~~~ 70 (70)
T PF13409_consen 13 EEKGLPYEIKVVPLIPKGEQKPPEFLAL-NPRGKVPVLVDPDGTVINESLAILEYLEEQ 70 (70)
T ss_dssp HHHTGTCEEEEEETTTTBCTTCHBHHHH-STT-SSSEEEETTTEEEESHHHHHHHHHHT
T ss_pred HHhCCCCEEEEEeeecCccccChhhhcc-CcCeEEEEEEECCCCEeeCHHHHHHHHhcC
Confidence 4689999998886543455667899988 89999999998 789999999999999874
No 42
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=99.39 E-value=9.8e-13 Score=79.52 Aligned_cols=50 Identities=22% Similarity=0.280 Sum_probs=44.2
Q ss_pred ccCCCcceEEEecCCCCCCCCchhhhcccCCCCCcCEEEEC-CeEeechHHHHHHH
Q psy9879 8 IADNVKVRSQGVNTSLQRSVKIPFFALLDYPFGKVPCIEIN-GVQYHQSRAIGRYL 62 (115)
Q Consensus 8 ~~~gi~fe~~~v~~~~~~~~~~~~~~~~~nP~gqvPvL~~~-g~~l~eS~AIl~YL 62 (115)
.++|++|+.+.+++. .+.++|++. ||.|+||+|+++ |..|+||.||++|+
T Consensus 20 ~~~gl~~e~~~v~~~----~~~~~~~~~-np~~~vP~L~~~~g~~l~eS~aI~~y~ 70 (71)
T cd03060 20 LLAGITVELREVELK----NKPAEMLAA-SPKGTVPVLVLGNGTVIEESLDIMRWA 70 (71)
T ss_pred HHcCCCcEEEEeCCC----CCCHHHHHH-CCCCCCCEEEECCCcEEecHHHHHHhh
Confidence 578999999999987 345789877 899999999984 99999999999997
No 43
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=99.38 E-value=8e-13 Score=79.48 Aligned_cols=54 Identities=30% Similarity=0.442 Sum_probs=47.0
Q ss_pred ccCCCcceEEEecCCCCCCCCchhhhcccCCCCCcCEEEE-CCeEeechHHHHHHHH
Q psy9879 8 IADNVKVRSQGVNTSLQRSVKIPFFALLDYPFGKVPCIEI-NGVQYHQSRAIGRYLA 63 (115)
Q Consensus 8 ~~~gi~fe~~~v~~~~~~~~~~~~~~~~~nP~gqvPvL~~-~g~~l~eS~AIl~YL~ 63 (115)
.++|++|+.+.+++. .++++.++|.+. ||.|++|+|++ +|..++||.||++||+
T Consensus 20 ~~~~l~~~~~~v~~~-~~~~~~~~~~~~-~p~~~vP~l~~~~~~~l~es~aI~~yLe 74 (74)
T cd03051 20 AEKGIDVPLVTVDLA-AGEQRSPEFLAK-NPAGTVPVLELDDGTVITESVAICRYLE 74 (74)
T ss_pred HHcCCCceEEEeecc-cCccCCHHHHhh-CCCCCCCEEEeCCCCEEecHHHHHHHhC
Confidence 568999999999987 455567889988 89999999985 7889999999999984
No 44
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.38 E-value=9.1e-13 Score=81.05 Aligned_cols=55 Identities=24% Similarity=0.103 Sum_probs=46.1
Q ss_pred ccCCCcceEEEecCCCCCCCCchhhhcccCCCCCcCEEEE--CCeEeechHHHHHHHHHhh
Q psy9879 8 IADNVKVRSQGVNTSLQRSVKIPFFALLDYPFGKVPCIEI--NGVQYHQSRAIGRYLARQA 66 (115)
Q Consensus 8 ~~~gi~fe~~~v~~~~~~~~~~~~~~~~~nP~gqvPvL~~--~g~~l~eS~AIl~YL~~~~ 66 (115)
.++||+|+.+.++. +++..++|++. ||.|+||+|++ +|..++||.||++||+++|
T Consensus 21 ~~~gi~y~~~~v~~---~~~~~~~~~~~-~p~~~vP~l~~~~~~~~l~es~~I~~yL~~~~ 77 (77)
T cd03041 21 TELELDVILYPCPK---GSPKRDKFLEK-GGKVQVPYLVDPNTGVQMFESADIVKYLFKTY 77 (77)
T ss_pred HHcCCcEEEEECCC---ChHHHHHHHHh-CCCCcccEEEeCCCCeEEEcHHHHHHHHHHhC
Confidence 57899999987753 33456889877 79999999997 4789999999999999875
No 45
>PRK10387 glutaredoxin 2; Provisional
Probab=99.31 E-value=5.9e-12 Score=89.67 Aligned_cols=72 Identities=18% Similarity=0.204 Sum_probs=55.6
Q ss_pred ccCCCcceEEEecCCCCCCCCchhhhcccCCCCCcCEE-EECCeEeechHHHHHHHHHhhC--CCCCChHHHHHHHHHHH
Q psy9879 8 IADNVKVRSQGVNTSLQRSVKIPFFALLDYPFGKVPCI-EINGVQYHQSRAIGRYLARQAG--LYGMDGPEMDMKIDMIV 84 (115)
Q Consensus 8 ~~~gi~fe~~~v~~~~~~~~~~~~~~~~~nP~gqvPvL-~~~g~~l~eS~AIl~YL~~~~~--l~p~d~~e~~a~v~~~~ 84 (115)
.++||+|+.+.++.. ++..+ .+. ||.|+||+| .++|.+|+||.||++||+++|+ +++ ..+ ++.+++|+
T Consensus 20 ~~~gi~y~~~~~~~~---~~~~~--~~~-~p~~~VPvL~~~~g~~l~eS~aI~~yL~~~~~~~~l~--~~~-~~~~~~~~ 90 (210)
T PRK10387 20 GLKNIPVELIVLAND---DEATP--IRM-IGQKQVPILQKDDGSYMPESLDIVHYIDELDGKPLLT--GKR-SPAIEEWL 90 (210)
T ss_pred HHcCCCeEEEEcCCC---chhhH--HHh-cCCcccceEEecCCeEecCHHHHHHHHHHhCCCccCC--Ccc-cHHHHHHH
Confidence 478999999888654 22223 346 799999999 4789999999999999999995 343 136 77888888
Q ss_pred HHHH
Q psy9879 85 DTID 88 (115)
Q Consensus 85 ~~~~ 88 (115)
.+..
T Consensus 91 ~~~~ 94 (210)
T PRK10387 91 RKVF 94 (210)
T ss_pred HHHH
Confidence 7763
No 46
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.30 E-value=3.8e-12 Score=77.04 Aligned_cols=49 Identities=27% Similarity=0.334 Sum_probs=43.2
Q ss_pred CCCcceEEEecCCCCCCCCchhhhcccCCCCCcCEEEE-CCeEeechHHHHHHHH
Q psy9879 10 DNVKVRSQGVNTSLQRSVKIPFFALLDYPFGKVPCIEI-NGVQYHQSRAIGRYLA 63 (115)
Q Consensus 10 ~gi~fe~~~v~~~~~~~~~~~~~~~~~nP~gqvPvL~~-~g~~l~eS~AIl~YL~ 63 (115)
+|++|+.+.++.. .+.++|++. ||+|++|+|++ +|..++||.||++||+
T Consensus 24 ~~i~~~~~~~~~~----~~~~~~~~~-~p~~~vP~l~~~~g~~l~es~aI~~yLe 73 (73)
T cd03049 24 LGDDVELVLVNPW----SDDESLLAV-NPLGKIPALVLDDGEALFDSRVICEYLD 73 (73)
T ss_pred CCCCcEEEEcCcc----cCChHHHHh-CCCCCCCEEEECCCCEEECHHHHHhhhC
Confidence 7899999999865 456889887 89999999985 7899999999999984
No 47
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=99.30 E-value=6.8e-12 Score=76.68 Aligned_cols=48 Identities=25% Similarity=0.265 Sum_probs=42.1
Q ss_pred ccCCCcceEEEecCCCCCCCCchhhhcccCCCCCcCEEEECCeEeechHHHHHHHHHhhC
Q psy9879 8 IADNVKVRSQGVNTSLQRSVKIPFFALLDYPFGKVPCIEINGVQYHQSRAIGRYLARQAG 67 (115)
Q Consensus 8 ~~~gi~fe~~~v~~~~~~~~~~~~~~~~~nP~gqvPvL~~~g~~l~eS~AIl~YL~~~~~ 67 (115)
.++|++|+.+.++.. +. ||+|++|+|+++|.+|+||.+|++||+++||
T Consensus 28 ~~~gi~~~~~~~~~~-----------~~-~p~g~vPvl~~~g~~l~eS~~I~~yL~~~~~ 75 (75)
T cd03080 28 RMAGIPYENKFGGLA-----------KR-SPKGKLPFIELNGEKIADSELIIDHLEEKYG 75 (75)
T ss_pred HHCCCCcEEeecCcc-----------cC-CCCCCCCEEEECCEEEcCHHHHHHHHHHHcC
Confidence 578999999877652 35 8999999999999999999999999999875
No 48
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=99.25 E-value=1.3e-11 Score=77.99 Aligned_cols=51 Identities=33% Similarity=0.419 Sum_probs=44.1
Q ss_pred ccCCCcceEEEecCCCCCCCCchhhhcccCCCCCcCEEEEC-CeEeechHHHHHHHH
Q psy9879 8 IADNVKVRSQGVNTSLQRSVKIPFFALLDYPFGKVPCIEIN-GVQYHQSRAIGRYLA 63 (115)
Q Consensus 8 ~~~gi~fe~~~v~~~~~~~~~~~~~~~~~nP~gqvPvL~~~-g~~l~eS~AIl~YL~ 63 (115)
.++|++|+.+.++.. ...++|++. ||+|++|+|+++ |..|+||.||++||+
T Consensus 38 ~~~gl~~~~~~v~~~----~~~~~~~~~-np~~~vPvL~~~~g~~l~eS~aI~~yLe 89 (89)
T cd03055 38 AAKNIPHEVININLK----DKPDWFLEK-NPQGKVPALEIDEGKVVYESLIICEYLD 89 (89)
T ss_pred HHcCCCCeEEEeCCC----CCcHHHHhh-CCCCCcCEEEECCCCEEECHHHHHHhhC
Confidence 468999999999886 244678877 899999999986 899999999999984
No 49
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=99.21 E-value=6.3e-11 Score=85.23 Aligned_cols=72 Identities=18% Similarity=0.254 Sum_probs=53.8
Q ss_pred ccCCCcceEEEecCCCCCCCCchhhhcccCCCCCcCEEE-ECCeEeechHHHHHHHHHhhC--CCCCChHHHHHHHHHHH
Q psy9879 8 IADNVKVRSQGVNTSLQRSVKIPFFALLDYPFGKVPCIE-INGVQYHQSRAIGRYLARQAG--LYGMDGPEMDMKIDMIV 84 (115)
Q Consensus 8 ~~~gi~fe~~~v~~~~~~~~~~~~~~~~~nP~gqvPvL~-~~g~~l~eS~AIl~YL~~~~~--l~p~d~~e~~a~v~~~~ 84 (115)
.++|++|+.+.++.. ++..+ ++. ||.|+||+|+ ++|..|+||.+|++||+++|+ +++ +.+ ++.+++|+
T Consensus 19 ~~~gl~~e~~~~~~~---~~~~~--~~~-np~g~vP~l~~~~g~~l~es~~I~~yL~~~~~~~~~~--~~~-~~~~~~~~ 89 (209)
T TIGR02182 19 GLKNIPVEKHVLLND---DEETP--IRM-IGAKQVPILQKDDGRAMPESLDIVAYFDKLDGEPLLT--GKV-SPEIEAWL 89 (209)
T ss_pred HHcCCCeEEEECCCC---cchhH--HHh-cCCCCcceEEeeCCeEeccHHHHHHHHHHhCCCccCC--CCC-hHHHHHHH
Confidence 478999999776543 22222 557 8999999998 789999999999999999985 332 224 56677777
Q ss_pred HHHH
Q psy9879 85 DTID 88 (115)
Q Consensus 85 ~~~~ 88 (115)
.+..
T Consensus 90 ~~~~ 93 (209)
T TIGR02182 90 RKVT 93 (209)
T ss_pred HHHH
Confidence 6653
No 50
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=99.17 E-value=5.3e-11 Score=71.70 Aligned_cols=51 Identities=16% Similarity=0.146 Sum_probs=41.0
Q ss_pred ccCCCcceEEEecCCCCCCCCchhhhcccCCCCCcCEEEEC-CeEeechHHHHHHHHH
Q psy9879 8 IADNVKVRSQGVNTSLQRSVKIPFFALLDYPFGKVPCIEIN-GVQYHQSRAIGRYLAR 64 (115)
Q Consensus 8 ~~~gi~fe~~~v~~~~~~~~~~~~~~~~~nP~gqvPvL~~~-g~~l~eS~AIl~YL~~ 64 (115)
.++|++|+.+.++.. . . ...++. +|.|+||+|+++ |..++||.||++||++
T Consensus 20 ~~~gl~~~~~~~~~~-~---~-~~~~~~-~~~~~vP~L~~~~~~~l~es~aI~~yL~~ 71 (71)
T cd03037 20 GLKNIPVEQIILQND-D---E-ATPIRM-IGAKQVPILEKDDGSFMAESLDIVAFIDE 71 (71)
T ss_pred HHcCCCeEEEECCCC-c---h-HHHHHh-cCCCccCEEEeCCCeEeehHHHHHHHHhC
Confidence 468999999988754 1 1 233456 799999999985 8999999999999974
No 51
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=99.10 E-value=1.7e-10 Score=70.38 Aligned_cols=53 Identities=21% Similarity=0.172 Sum_probs=43.1
Q ss_pred ccCCCcceEEEecCCCCCCCCchhhhcccCCCCCcCEEEEC----CeEeechHHHHHHHHHhhC
Q psy9879 8 IADNVKVRSQGVNTSLQRSVKIPFFALLDYPFGKVPCIEIN----GVQYHQSRAIGRYLARQAG 67 (115)
Q Consensus 8 ~~~gi~fe~~~v~~~~~~~~~~~~~~~~~nP~gqvPvL~~~----g~~l~eS~AIl~YL~~~~~ 67 (115)
.++|++|+.+.++.. ..+++ +. ||+|+||+|+++ |.+|+||.+|++||+++.|
T Consensus 21 ~~~gi~y~~~~~~~~-----~~~~~-~~-~~~~~vP~l~~~~~~~~~~l~eS~~I~~yL~~~~~ 77 (77)
T cd03040 21 DYHGIPYEVVEVNPV-----SRKEI-KW-SSYKKVPILRVESGGDGQQLVDSSVIISTLKTYLG 77 (77)
T ss_pred HHCCCceEEEECCch-----hHHHH-HH-hCCCccCEEEECCCCCccEEEcHHHHHHHHHHHcC
Confidence 578999999988765 12344 45 799999999965 7899999999999998753
No 52
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=99.04 E-value=5.1e-10 Score=67.58 Aligned_cols=46 Identities=24% Similarity=0.329 Sum_probs=40.5
Q ss_pred ccCCCcceEEEecCCCCCCCCchhhhcccCCCCCcCEEEECCeEeechHHHHHHHHHh
Q psy9879 8 IADNVKVRSQGVNTSLQRSVKIPFFALLDYPFGKVPCIEINGVQYHQSRAIGRYLARQ 65 (115)
Q Consensus 8 ~~~gi~fe~~~v~~~~~~~~~~~~~~~~~nP~gqvPvL~~~g~~l~eS~AIl~YL~~~ 65 (115)
..+|++|+.+.++.. . . ||.|++|+|+++|..++||.+|++||+++
T Consensus 27 ~~~~i~~~~~~~~~~-~----------~-~p~g~vP~l~~~g~~l~es~~I~~yL~~~ 72 (72)
T cd03054 27 RMAGIPYEVVFSSNP-W----------R-SPTGKLPFLELNGEKIADSEKIIEYLKKK 72 (72)
T ss_pred HhCCCceEEEecCCc-c----------c-CCCcccCEEEECCEEEcCHHHHHHHHhhC
Confidence 468999999988865 1 4 79999999999999999999999999875
No 53
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=99.03 E-value=7.1e-10 Score=64.63 Aligned_cols=52 Identities=31% Similarity=0.375 Sum_probs=42.8
Q ss_pred ccCCCcceEEEecCCCCCCCCchhhhcccCCCCCcCEEEECCeEeechHHHHHHHH
Q psy9879 8 IADNVKVRSQGVNTSLQRSVKIPFFALLDYPFGKVPCIEINGVQYHQSRAIGRYLA 63 (115)
Q Consensus 8 ~~~gi~fe~~~v~~~~~~~~~~~~~~~~~nP~gqvPvL~~~g~~l~eS~AIl~YL~ 63 (115)
..+|++|+.+.++.. ... ..++.+. +|.+++|+|+++|..++||.+|++||+
T Consensus 20 ~~~~i~~~~~~~~~~-~~~--~~~~~~~-~~~~~~P~l~~~~~~~~es~~I~~yl~ 71 (71)
T cd00570 20 EEKGLPYELVPVDLG-EGE--QEEFLAL-NPLGKVPVLEDGGLVLTESLAILEYLA 71 (71)
T ss_pred HHcCCCcEEEEeCCC-CCC--CHHHHhc-CCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 467999999999876 221 1257766 799999999999999999999999984
No 54
>KOG4420|consensus
Probab=98.95 E-value=2.1e-09 Score=80.03 Aligned_cols=61 Identities=25% Similarity=0.310 Sum_probs=56.9
Q ss_pred cCCCcceEEEecCCCCCCCCchhhhcccCCCCCcCEEEECCeEeechHHHHHHHHHhh-C---CCCC
Q psy9879 9 ADNVKVRSQGVNTSLQRSVKIPFFALLDYPFGKVPCIEINGVQYHQSRAIGRYLARQA-G---LYGM 71 (115)
Q Consensus 9 ~~gi~fe~~~v~~~~~~~~~~~~~~~~~nP~gqvPvL~~~g~~l~eS~AIl~YL~~~~-~---l~p~ 71 (115)
++||+|+...|++. .++|..|+|..+ ||.|.||||++|+.+|+++.-|+.|+.+++ | |.|.
T Consensus 47 EK~id~~~y~V~l~-~geh~epwFmrl-Np~gevPVl~~g~~II~d~tqIIdYvErtf~ger~l~pe 111 (325)
T KOG4420|consen 47 EKGIDCEEYDVSLP-QGEHKEPWFMRL-NPGGEVPVLIHGDNIISDYTQIIDYVERTFTGERVLMPE 111 (325)
T ss_pred hcccccceeeccCc-cccccCchheec-CCCCCCceEecCCeecccHHHHHHHHHHhhccccccccc
Confidence 78999999999999 899999999988 899999999999999999999999999988 3 7775
No 55
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=98.93 E-value=2.1e-09 Score=66.20 Aligned_cols=47 Identities=19% Similarity=0.289 Sum_probs=37.2
Q ss_pred ccCCCcceEEEecCCCCCCCCchhhhcccCCCCCcCEEEECCeEeechHHHHHHHHHh
Q psy9879 8 IADNVKVRSQGVNTSLQRSVKIPFFALLDYPFGKVPCIEINGVQYHQSRAIGRYLARQ 65 (115)
Q Consensus 8 ~~~gi~fe~~~v~~~~~~~~~~~~~~~~~nP~gqvPvL~~~g~~l~eS~AIl~YL~~~ 65 (115)
.+.|++|+.+ ++. . .++ . +|.||||+|++||.+|+||.||+.||+++
T Consensus 28 ~elglpye~~--~~~-~-----~~~--~-~P~GkVP~L~~dg~vI~eS~aIl~yL~~~ 74 (74)
T cd03079 28 KMCNLPFNVR--CRA-N-----AEF--M-SPSGKVPFIRVGNQIVSEFGPIVQFVEAK 74 (74)
T ss_pred HHcCCCcEEE--ecC-C-----ccc--c-CCCCcccEEEECCEEEeCHHHHHHHHhcC
Confidence 3679999987 332 1 122 3 68899999999999999999999999874
No 56
>PLN02907 glutamate-tRNA ligase
Probab=98.86 E-value=8e-09 Score=86.48 Aligned_cols=51 Identities=27% Similarity=0.466 Sum_probs=46.3
Q ss_pred CCCCCcCEEEE-CCeEeechHHHHHHHHHhhC---CCCCChHHHHHHHHHHHHHHH
Q psy9879 37 YPFGKVPCIEI-NGVQYHQSRAIGRYLARQAG---LYGMDGPEMDMKIDMIVDTID 88 (115)
Q Consensus 37 nP~gqvPvL~~-~g~~l~eS~AIl~YL~~~~~---l~p~d~~e~~a~v~~~~~~~~ 88 (115)
+|+|+||+|++ +|.+|+||.||++||+++++ |+|.++.+ ++++++|+.+..
T Consensus 33 ~p~GkVPvLv~ddG~~L~ES~AIl~YLa~~~p~~~L~p~d~~e-rAqV~qWL~~~~ 87 (722)
T PLN02907 33 LKSGSAPTLLFSSGEKLTGTNVLLRYIARSASLPGFYGQDAFE-SSQVDEWLDYAP 87 (722)
T ss_pred CCCCCCcEEEECCCCEEECHHHHHHHHHHhCCCcCCCCCCHHH-HHHHHHHHHHHh
Confidence 69999999995 88999999999999999984 88999999 999999998764
No 57
>KOG1422|consensus
Probab=98.16 E-value=3.3e-05 Score=56.05 Aligned_cols=54 Identities=22% Similarity=0.291 Sum_probs=48.9
Q ss_pred cCCCcceEEEecCCCCCCCCchhhhcccCCCCCcCEEEECCeEeechHHHHHHHHHhhC
Q psy9879 9 ADNVKVRSQGVNTSLQRSVKIPFFALLDYPFGKVPCIEINGVQYHQSRAIGRYLARQAG 67 (115)
Q Consensus 9 ~~gi~fe~~~v~~~~~~~~~~~~~~~~~nP~gqvPvL~~~g~~l~eS~AIl~YL~~~~~ 67 (115)
++|++|....||.. .+.++|+++ .|.|++|+|..++...+||..|-++|.++++
T Consensus 33 ~k~~~f~vttVd~~----~kp~~f~~~-sp~~~~P~l~~d~~~~tDs~~Ie~~Lee~l~ 86 (221)
T KOG1422|consen 33 LKGVPFKVTTVDLS----RKPEWFLDI-SPGGKPPVLKFDEKWVTDSDKIEEFLEEKLP 86 (221)
T ss_pred HcCCCceEEEeecC----CCcHHHHhh-CCCCCCCeEEeCCceeccHHHHHHHHHHhcC
Confidence 78999999999998 356778766 8999999999999999999999999999984
No 58
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=98.04 E-value=1.7e-05 Score=48.39 Aligned_cols=29 Identities=31% Similarity=0.536 Sum_probs=27.2
Q ss_pred CCCCCcCEEEECCeEeechHHHHHHHHHh
Q psy9879 37 YPFGKVPCIEINGVQYHQSRAIGRYLARQ 65 (115)
Q Consensus 37 nP~gqvPvL~~~g~~l~eS~AIl~YL~~~ 65 (115)
.|.||+|+|+++|..+.+|..|++||.++
T Consensus 44 sp~gkLP~l~~~~~~i~d~~~Ii~~L~~~ 72 (73)
T cd03078 44 SPTGKLPALLTSGTKISGPEKIIEYLRKQ 72 (73)
T ss_pred CCCCccCEEEECCEEecChHHHHHHHHHc
Confidence 69999999999999999999999999875
No 59
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=97.48 E-value=0.0002 Score=43.91 Aligned_cols=50 Identities=16% Similarity=0.138 Sum_probs=39.8
Q ss_pred cCCCcceEEEecCCCCCCCCchhhhcccCCCCCcCEEEECCeEeechHHHHHHHH
Q psy9879 9 ADNVKVRSQGVNTSLQRSVKIPFFALLDYPFGKVPCIEINGVQYHQSRAIGRYLA 63 (115)
Q Consensus 9 ~~gi~fe~~~v~~~~~~~~~~~~~~~~~nP~gqvPvL~~~g~~l~eS~AIl~YL~ 63 (115)
+.|++|+.+.++-. ....++.+. ++..++|++..+|..+.++..|.+||+
T Consensus 30 ~~gi~y~~idi~~~----~~~~~~~~~-~g~~~vP~i~i~g~~igG~~~l~~~l~ 79 (79)
T TIGR02190 30 EKGYDFEEIPLGND----ARGRSLRAV-TGATTVPQVFIGGKLIGGSDELEAYLA 79 (79)
T ss_pred HcCCCcEEEECCCC----hHHHHHHHH-HCCCCcCeEEECCEEEcCHHHHHHHhC
Confidence 57899998776543 233556555 688999999999999999999999985
No 60
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.0013 Score=47.08 Aligned_cols=90 Identities=17% Similarity=0.174 Sum_probs=57.1
Q ss_pred cCCCcceEEEecCCCCCCCCchhhhcccCCCCCcCEEEE-CCeEeechHHHHHHHHHhhC---CCCCChHHHHHHHHHHH
Q psy9879 9 ADNVKVRSQGVNTSLQRSVKIPFFALLDYPFGKVPCIEI-NGVQYHQSRAIGRYLARQAG---LYGMDGPEMDMKIDMIV 84 (115)
Q Consensus 9 ~~gi~fe~~~v~~~~~~~~~~~~~~~~~nP~gqvPvL~~-~g~~l~eS~AIl~YL~~~~~---l~p~d~~e~~a~v~~~~ 84 (115)
-+|||++..-.+..+ ..+|- .+ .-..|||+|+- +|..+.||.-|.+|+++..| +.+.- +-.++.|+
T Consensus 21 l~nipve~~vL~nDD---e~Tp~--rm-iG~KqVPiL~Kedg~~m~ESlDIV~y~d~~~~~~~lt~~~----~pai~~wl 90 (215)
T COG2999 21 LKNIPVELHVLLNDD---EETPI--RM-IGQKQVPILQKEDGRAMPESLDIVHYVDELDGKPLLTGKV----RPAIEAWL 90 (215)
T ss_pred ccCCChhhheeccCc---ccChh--hh-hcccccceEEccccccchhhhHHHHHHHHhcCchhhccCc----CHHHHHHH
Confidence 468899887666541 12222 13 35679999985 78999999999999999887 44442 33366676
Q ss_pred HHHHH-----HHhhccc---CChhhHHHHHHH
Q psy9879 85 DTIDD-----MRQVHKC---DKDATQNVWLRW 108 (115)
Q Consensus 85 ~~~~d-----l~~~~~~---~~~~~~~~~~~~ 108 (115)
..+.- +.+.+.+ +.+.++.+...|
T Consensus 91 rkv~~y~nkll~PR~~k~~l~EF~T~sA~~yf 122 (215)
T COG2999 91 RKVNGYLNKLLLPRFAKSALPEFATPSARKYF 122 (215)
T ss_pred HHhcchHhhhhhhhHhhcCCccccCHHHHHHH
Confidence 65532 2233433 455555555554
No 61
>KOG3029|consensus
Probab=97.20 E-value=0.0016 Score=49.59 Aligned_cols=49 Identities=27% Similarity=0.237 Sum_probs=38.5
Q ss_pred CCCcceEEEecCCCCCCCCchhhhcccCCCCCcCEEEECCeEeechHHHHHHHHHh
Q psy9879 10 DNVKVRSQGVNTSLQRSVKIPFFALLDYPFGKVPCIEINGVQYHQSRAIGRYLARQ 65 (115)
Q Consensus 10 ~gi~fe~~~v~~~~~~~~~~~~~~~~~nP~gqvPvL~~~g~~l~eS~AIl~YL~~~ 65 (115)
.||+|+++.||... ..+.+ - ..+.|||+|...|..+.||.+|+.-|+..
T Consensus 112 hgisY~VVEVnpV~-----r~eIk-~-SsykKVPil~~~Geqm~dSsvIIs~laTy 160 (370)
T KOG3029|consen 112 HGISYAVVEVNPVL-----RQEIK-W-SSYKKVPILLIRGEQMVDSSVIISLLATY 160 (370)
T ss_pred cCCceEEEEecchh-----hhhcc-c-cccccccEEEeccceechhHHHHHHHHHH
Confidence 68999999999972 23332 3 47789999998777899999999888664
No 62
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=96.61 E-value=0.0077 Score=36.67 Aligned_cols=26 Identities=31% Similarity=0.437 Sum_probs=24.9
Q ss_pred CCCCCcCEEEE-CCeEeechHHHHHHH
Q psy9879 37 YPFGKVPCIEI-NGVQYHQSRAIGRYL 62 (115)
Q Consensus 37 nP~gqvPvL~~-~g~~l~eS~AIl~YL 62 (115)
.|.|++|+|.+ ++..+++-..|++||
T Consensus 45 Sptg~LP~L~~~~~~~vsg~~~Iv~yL 71 (72)
T PF10568_consen 45 SPTGELPALIDSGGTWVSGFRNIVEYL 71 (72)
T ss_pred CCCCCCCEEEECCCcEEECHHHHHHhh
Confidence 69999999999 899999999999998
No 63
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=96.53 E-value=0.0068 Score=36.07 Aligned_cols=50 Identities=14% Similarity=0.135 Sum_probs=37.9
Q ss_pred cCCCcceEEEecCCCCCCCCchhhhcccCCCCCcCEEEECCeEeechHHHHHHHH
Q psy9879 9 ADNVKVRSQGVNTSLQRSVKIPFFALLDYPFGKVPCIEINGVQYHQSRAIGRYLA 63 (115)
Q Consensus 9 ~~gi~fe~~~v~~~~~~~~~~~~~~~~~nP~gqvPvL~~~g~~l~eS~AIl~YL~ 63 (115)
..|++|+.+.++-. . ...++... ....++|++..||..+..+..|.+||+
T Consensus 23 ~~~i~~~~~~v~~~-~---~~~~~~~~-~g~~~vP~ifi~g~~igg~~~l~~~l~ 72 (72)
T cd03029 23 ENGISYEEIPLGKD-I---TGRSLRAV-TGAMTVPQVFIDGELIGGSDDLEKYFA 72 (72)
T ss_pred HcCCCcEEEECCCC-h---hHHHHHHH-hCCCCcCeEEECCEEEeCHHHHHHHhC
Confidence 46899998877654 1 23344434 577899999999999999999999984
No 64
>PRK10638 glutaredoxin 3; Provisional
Probab=96.53 E-value=0.0052 Score=37.75 Aligned_cols=52 Identities=13% Similarity=0.004 Sum_probs=39.8
Q ss_pred ccCCCcceEEEecCCCCCCCCchhhhcccCCCCCcCEEEECCeEeechHHHHHHHH
Q psy9879 8 IADNVKVRSQGVNTSLQRSVKIPFFALLDYPFGKVPCIEINGVQYHQSRAIGRYLA 63 (115)
Q Consensus 8 ~~~gi~fe~~~v~~~~~~~~~~~~~~~~~nP~gqvPvL~~~g~~l~eS~AIl~YL~ 63 (115)
-++|++|+.+.|+.. ....+++.+. +|.+++|++..+|..+.....+..+-.
T Consensus 23 ~~~gi~y~~~dv~~~---~~~~~~l~~~-~g~~~vP~i~~~g~~igG~~~~~~~~~ 74 (83)
T PRK10638 23 NSKGVSFQEIPIDGD---AAKREEMIKR-SGRTTVPQIFIDAQHIGGCDDLYALDA 74 (83)
T ss_pred HHcCCCcEEEECCCC---HHHHHHHHHH-hCCCCcCEEEECCEEEeCHHHHHHHHH
Confidence 367999999888754 1234667766 799999999999999988877776543
No 65
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=96.24 E-value=0.0081 Score=34.87 Aligned_cols=50 Identities=14% Similarity=0.117 Sum_probs=33.8
Q ss_pred cCCCcceEEEecCCCCCCCCchhhhcccCCCCCcCEEEECCeEe--echHHHHHHH
Q psy9879 9 ADNVKVRSQGVNTSLQRSVKIPFFALLDYPFGKVPCIEINGVQY--HQSRAIGRYL 62 (115)
Q Consensus 9 ~~gi~fe~~~v~~~~~~~~~~~~~~~~~nP~gqvPvL~~~g~~l--~eS~AIl~YL 62 (115)
+.|++|+.+.++-. .+..+++.+. ++.+.+|++..+|..+ +++.+|.++|
T Consensus 22 ~~~i~~~~vdi~~~---~~~~~~~~~~-~~~~~vP~~~~~~~~~~g~~~~~i~~~i 73 (74)
T TIGR02196 22 SKGIAFEEIDVEKD---SAAREEVLKV-LGQRGVPVIVIGHKIIVGFDPEKLDQLL 73 (74)
T ss_pred HCCCeEEEEeccCC---HHHHHHHHHH-hCCCcccEEEECCEEEeeCCHHHHHHHh
Confidence 35777777655432 2234566666 7999999999988776 5666666654
No 66
>KOG4244|consensus
Probab=95.64 E-value=0.08 Score=40.01 Aligned_cols=64 Identities=16% Similarity=0.181 Sum_probs=45.2
Q ss_pred cCCCcceEEEecCCCCCCCCchhhhcccCCCCCcCEEEECCeEeechHHHHHHHHHhhCCCC-CChHHHHHHHHHHHH
Q psy9879 9 ADNVKVRSQGVNTSLQRSVKIPFFALLDYPFGKVPCIEINGVQYHQSRAIGRYLARQAGLYG-MDGPEMDMKIDMIVD 85 (115)
Q Consensus 9 ~~gi~fe~~~v~~~~~~~~~~~~~~~~~nP~gqvPvL~~~g~~l~eS~AIl~YL~~~~~l~p-~d~~e~~a~v~~~~~ 85 (115)
+.+||||.+.-.+. .. .+.|++|-++.+|..+.+|.-|..+|.+.+++-- -.+.+ +|+.+....
T Consensus 73 ~~~IpYE~~~~~~~-----------~r-Sr~G~lPFIELNGe~iaDS~~I~~~L~~hf~~~~~L~~e~-~a~s~Al~r 137 (281)
T KOG4244|consen 73 AYDIPYEIVDCSLK-----------RR-SRNGTLPFIELNGEHIADSDLIEDRLRKHFKIPDDLSAEQ-RAQSRALSR 137 (281)
T ss_pred HhCCCceeccccce-----------ee-ccCCCcceEEeCCeeccccHHHHHHHHHHcCCCCCCCHHH-HHHHHHHHH
Confidence 56788887543321 13 6899999999999999999999999998886332 23455 555444333
No 67
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=95.64 E-value=0.014 Score=33.75 Aligned_cols=42 Identities=12% Similarity=0.192 Sum_probs=30.4
Q ss_pred cCCCcceEEEecCCCCCCCCchhhhcccCCCCCcCEEEECCeEeec
Q psy9879 9 ADNVKVRSQGVNTSLQRSVKIPFFALLDYPFGKVPCIEINGVQYHQ 54 (115)
Q Consensus 9 ~~gi~fe~~~v~~~~~~~~~~~~~~~~~nP~gqvPvL~~~g~~l~e 54 (115)
++|++|+.+.++.. .+..+++.+. ||.+++|++.++|..+..
T Consensus 22 ~~~i~~~~~~i~~~---~~~~~~~~~~-~~~~~vP~i~~~~~~i~g 63 (73)
T cd02976 22 ERGIPFEEVDVDED---PEALEELKKL-NGYRSVPVVVIGDEHLSG 63 (73)
T ss_pred HCCCCeEEEeCCCC---HHHHHHHHHH-cCCcccCEEEECCEEEec
Confidence 46888888777653 2234677766 799999999998765544
No 68
>cd03200 GST_C_JTV1 GST_C family, JTV-1 subfamily; composed of uncharacterized proteins with similarity to the translation product of the human JTV-1 gene. Human JTV-1, a gene of unknown function, initiates within the human PMS2 gene promoter, but is transcribed from the opposite strand. PMS2 encodes a protein involved in DNA mismatch repair and is mutated in a subset of patients with hereditary nonpolyposis colon cancer. It is unknown whether the expression of JTV-1 affects that of PMS2, or vice versa, as a result of their juxtaposition. JTV-1 is up-regulated while PMS2 is down-regulated in tumor cell spheroids that show increased resistance to anticancer cytotoxic drugs compared with tumor cell monolayers indicating that suppressed DNA mismatch repair may be a mechanism for multicellular resistance to alkylating agents.
Probab=95.21 E-value=0.027 Score=35.64 Aligned_cols=32 Identities=28% Similarity=0.252 Sum_probs=28.4
Q ss_pred HHHHHHhhCCCCCChHHHHHHHHHHHHHHH-HHH
Q psy9879 59 GRYLARQAGLYGMDGPEMDMKIDMIVDTID-DMR 91 (115)
Q Consensus 59 l~YL~~~~~l~p~d~~e~~a~v~~~~~~~~-dl~ 91 (115)
+|||++..|++|.++.+ ++++++|++... ++.
T Consensus 1 ~r~~~~~~~~~~~~~~~-~~~vd~~~d~~~~~l~ 33 (96)
T cd03200 1 ARFLYRLLGPAPNAPNA-ATNIDSWVDTAIFQLA 33 (96)
T ss_pred CchHHHHhcccCCCchH-HHHHHHHHHHHHHHHh
Confidence 58999998899999999 999999999875 765
No 69
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=94.97 E-value=0.049 Score=31.20 Aligned_cols=48 Identities=15% Similarity=0.046 Sum_probs=34.9
Q ss_pred cCCCcceEEEecCCCCCCCCchhhhcccCCCCCcCEEEECCeEeechHHHHH
Q psy9879 9 ADNVKVRSQGVNTSLQRSVKIPFFALLDYPFGKVPCIEINGVQYHQSRAIGR 60 (115)
Q Consensus 9 ~~gi~fe~~~v~~~~~~~~~~~~~~~~~nP~gqvPvL~~~g~~l~eS~AIl~ 60 (115)
++|++|+.+.++-. .+...++.+. ++..++|++..+|..+..+..|.+
T Consensus 22 ~~~i~~~~~di~~~---~~~~~~l~~~-~~~~~~P~~~~~~~~igg~~~~~~ 69 (72)
T cd02066 22 SLGIEFEEIDILED---GELREELKEL-SGWPTVPQIFINGEFIGGYDDLKA 69 (72)
T ss_pred HcCCcEEEEECCCC---HHHHHHHHHH-hCCCCcCEEEECCEEEecHHHHHH
Confidence 46788876665543 1234566656 799999999999999999877765
No 70
>PRK10329 glutaredoxin-like protein; Provisional
Probab=94.79 E-value=0.046 Score=33.72 Aligned_cols=40 Identities=8% Similarity=0.099 Sum_probs=27.2
Q ss_pred cCCCcceEEEecCCCCCCCCchhhhcccCCCCCcCEEEECCeEee
Q psy9879 9 ADNVKVRSQGVNTSLQRSVKIPFFALLDYPFGKVPCIEINGVQYH 53 (115)
Q Consensus 9 ~~gi~fe~~~v~~~~~~~~~~~~~~~~~nP~gqvPvL~~~g~~l~ 53 (115)
++||+|+.+.++-. ....+.+.. ++..+||+++.++..+.
T Consensus 23 ~~gI~~~~idi~~~----~~~~~~~~~-~g~~~vPvv~i~~~~~~ 62 (81)
T PRK10329 23 SRGFDFEMINVDRV----PEAAETLRA-QGFRQLPVVIAGDLSWS 62 (81)
T ss_pred HCCCceEEEECCCC----HHHHHHHHH-cCCCCcCEEEECCEEEe
Confidence 57999999887743 112223335 58899999998875443
No 71
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=94.16 E-value=0.12 Score=34.23 Aligned_cols=51 Identities=22% Similarity=0.308 Sum_probs=34.1
Q ss_pred ceEEEecCCCCCCCCchhhhc-ccCCCCCcCEEEE-CC-------------eEeechHHHHHHHHHhhCC
Q psy9879 14 VRSQGVNTSLQRSVKIPFFAL-LDYPFGKVPCIEI-NG-------------VQYHQSRAIGRYLARQAGL 68 (115)
Q Consensus 14 fe~~~v~~~~~~~~~~~~~~~-~~nP~gqvPvL~~-~g-------------~~l~eS~AIl~YL~~~~~l 68 (115)
.+.++|++. .. ..+..+ +.--...+|+|+. +| ..|.++..|++||+++||+
T Consensus 44 ldV~rV~f~-RP---R~~vi~llGE~~QslPvLVL~~~~~~~~~~~~~~~~rfi~d~~~I~~~La~r~g~ 109 (112)
T PF11287_consen 44 LDVRRVDFP-RP---RQAVIALLGEANQSLPVLVLADGAPSPDDAGSHGGRRFIDDPRRILRYLAERHGF 109 (112)
T ss_pred ccEEEeCCC-Cc---hHHHHHHhChhccCCCEEEeCCCCCCcccccccCCeEEeCCHHHHHHHHHHHcCC
Confidence 466778876 21 122221 2224567899986 33 2799999999999999985
No 72
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=94.10 E-value=0.094 Score=31.13 Aligned_cols=44 Identities=9% Similarity=-0.087 Sum_probs=32.6
Q ss_pred cCCCcceEEEecCCCCCCCCchhhhcccCCCCCcCEEEECCeEeechH
Q psy9879 9 ADNVKVRSQGVNTSLQRSVKIPFFALLDYPFGKVPCIEINGVQYHQSR 56 (115)
Q Consensus 9 ~~gi~fe~~~v~~~~~~~~~~~~~~~~~nP~gqvPvL~~~g~~l~eS~ 56 (115)
++||+|+.+.++-. ....+++.+. ++.+++|++..+|..+..-.
T Consensus 23 ~~gi~~~~~di~~~---~~~~~el~~~-~g~~~vP~v~i~~~~iGg~~ 66 (73)
T cd03027 23 EKGLPYVEINIDIF---PERKAELEER-TGSSVVPQIFFNEKLVGGLT 66 (73)
T ss_pred HCCCceEEEECCCC---HHHHHHHHHH-hCCCCcCEEEECCEEEeCHH
Confidence 57899998866543 2345678777 69999999999887766543
No 73
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=92.94 E-value=0.33 Score=29.80 Aligned_cols=45 Identities=16% Similarity=0.037 Sum_probs=32.3
Q ss_pred ccCCCcceEEEecCCCCCCCCchhhhcccCCCCCcCEEEECCeEeec
Q psy9879 8 IADNVKVRSQGVNTSLQRSVKIPFFALLDYPFGKVPCIEINGVQYHQ 54 (115)
Q Consensus 8 ~~~gi~fe~~~v~~~~~~~~~~~~~~~~~nP~gqvPvL~~~g~~l~e 54 (115)
..+|++|+.+.++.. .+ ....++.+..++..+||++..||..+.-
T Consensus 22 ~~~g~~~~~i~~~~~-~~-~~~~~~~~~~~g~~tvP~I~i~~~~igg 66 (80)
T COG0695 22 DRKGVDYEEIDVDDD-EP-EEAREMVKRGKGQRTVPQIFIGGKHVGG 66 (80)
T ss_pred HHcCCCcEEEEecCC-cH-HHHHHHHHHhCCCCCcCEEEECCEEEeC
Confidence 368999999888876 22 2344555554689999999998876653
No 74
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=92.41 E-value=0.14 Score=30.03 Aligned_cols=46 Identities=7% Similarity=-0.020 Sum_probs=30.2
Q ss_pred ccCCCcceEEEecCCCCCCCCchhhhcccCCCCCcCEEEE-CCeEeechH
Q psy9879 8 IADNVKVRSQGVNTSLQRSVKIPFFALLDYPFGKVPCIEI-NGVQYHQSR 56 (115)
Q Consensus 8 ~~~gi~fe~~~v~~~~~~~~~~~~~~~~~nP~gqvPvL~~-~g~~l~eS~ 56 (115)
.+.|++|+.+.++-. ......+.+.+++...+|+++. +|..+.++.
T Consensus 21 ~~~~~~~~~idi~~~---~~~~~~~~~~~~~~~~vP~i~~~~g~~l~~~~ 67 (77)
T TIGR02200 21 DKLGAAYEWVDIEED---EGAADRVVSVNNGNMTVPTVKFADGSFLTNPS 67 (77)
T ss_pred HHcCCceEEEeCcCC---HhHHHHHHHHhCCCceeCEEEECCCeEecCCC
Confidence 356888887655433 2234555556348999999975 777777653
No 75
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=91.94 E-value=0.32 Score=28.58 Aligned_cols=50 Identities=14% Similarity=-0.044 Sum_probs=34.3
Q ss_pred cCCCcceEEEecCCCCCCCCchhhhcccCCCC-CcCEEEECCeEeechHHHHHHH
Q psy9879 9 ADNVKVRSQGVNTSLQRSVKIPFFALLDYPFG-KVPCIEINGVQYHQSRAIGRYL 62 (115)
Q Consensus 9 ~~gi~fe~~~v~~~~~~~~~~~~~~~~~nP~g-qvPvL~~~g~~l~eS~AIl~YL 62 (115)
++|++|+.+.++.. . ....++.+. .... ++|++..+|..+.....+.++-
T Consensus 22 ~~~i~~~~i~i~~~--~-~~~~~~~~~-~~~~~~vP~v~i~g~~igg~~~~~~~~ 72 (75)
T cd03418 22 KKGVDYEEIDVDGD--P-ALREEMINR-SGGRRTVPQIFIGDVHIGGCDDLYALE 72 (75)
T ss_pred HCCCcEEEEECCCC--H-HHHHHHHHH-hCCCCccCEEEECCEEEeChHHHHHHH
Confidence 57899998877643 1 123444434 2334 8999999999898888777654
No 76
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=91.85 E-value=0.56 Score=28.59 Aligned_cols=56 Identities=16% Similarity=0.244 Sum_probs=39.7
Q ss_pred CCCcceEEEecCCCCCCCCchhhhcc-cCCCCCcCEEEECCeEeechHHHHHHHHHhhCC
Q psy9879 10 DNVKVRSQGVNTSLQRSVKIPFFALL-DYPFGKVPCIEINGVQYHQSRAIGRYLARQAGL 68 (115)
Q Consensus 10 ~gi~fe~~~v~~~~~~~~~~~~~~~~-~nP~gqvPvL~~~g~~l~eS~AIl~YL~~~~~l 68 (115)
.|++|+.+.++-. . ...+++.+. +.+...||++..+|..+.....|..++.+.++|
T Consensus 29 ~~i~~~~idi~~~-~--~~~~el~~~~~~~~~~vP~ifi~g~~igg~~~~~~~~~~~~~~ 85 (85)
T PRK11200 29 DDFDYRYVDIHAE-G--ISKADLEKTVGKPVETVPQIFVDQKHIGGCTDFEAYVKENLGL 85 (85)
T ss_pred cCCcEEEEECCCC-h--HHHHHHHHHHCCCCCcCCEEEECCEEEcCHHHHHHHHHHhccC
Confidence 5888888877743 1 112344332 123468999999999999999999999888764
No 77
>PF09635 MetRS-N: MetRS-N binding domain; InterPro: IPR018285 This entry represents the N-terminal domain of methionyl-tRNA synthetase (MetRS). This N-terminal appended domain mediates non-catalytic complex formation through its interaction with a domain in the tRNA aminoacylation cofactor Arc1p. The interacting domains of MetRS, GluRS (glutamyl-tRNA synthetase) and Arc1p form a ternary complex resembling a classical GST homo-dimer []. Domain-swapping between symmetrically related MetRS-N and Arc1p-N domains generates a 2:2 tetramer held together by van der Waals forces. This domain is necessary for formation of the aminoacyl-tRNA synthetase complex necessary for tRNA nuclear export and shuttling as part of the translational apparatus. ; PDB: 2HSN_A.
Probab=91.56 E-value=0.11 Score=34.75 Aligned_cols=30 Identities=27% Similarity=0.317 Sum_probs=14.7
Q ss_pred CCCCCcCEEEE--CCeEeechHHHHHHHHHhh
Q psy9879 37 YPFGKVPCIEI--NGVQYHQSRAIGRYLARQA 66 (115)
Q Consensus 37 nP~gqvPvL~~--~g~~l~eS~AIl~YL~~~~ 66 (115)
|+-..-|-|.+ +|+.|+|+.||+||+..-|
T Consensus 31 ~ed~~~~~L~~~~~gF~L~e~NAIvrYl~nDF 62 (122)
T PF09635_consen 31 NEDESGPLLKDKKSGFELFEPNAIVRYLANDF 62 (122)
T ss_dssp -SS--S--EEE-S--S----HHHHHHHHTT--
T ss_pred CCccccceeeecCCceEEecccHHHHHHHhhc
Confidence 45556688866 6899999999999999865
No 78
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=91.45 E-value=0.44 Score=28.48 Aligned_cols=52 Identities=13% Similarity=-0.024 Sum_probs=37.3
Q ss_pred cCCCcceEEEecCCCCCCCCchhhhcccCCCCCcCEEEECCeEeechHHHHHHHHH
Q psy9879 9 ADNVKVRSQGVNTSLQRSVKIPFFALLDYPFGKVPCIEINGVQYHQSRAIGRYLAR 64 (115)
Q Consensus 9 ~~gi~fe~~~v~~~~~~~~~~~~~~~~~nP~gqvPvL~~~g~~l~eS~AIl~YL~~ 64 (115)
++|++|+.+.++.. . ....++.+. .....+|++..+|..+.....+..+-.+
T Consensus 21 ~~~i~~~~~di~~~-~--~~~~~~~~~-~g~~~vP~i~i~g~~igg~~~~~~~~~~ 72 (79)
T TIGR02181 21 SKGVTFTEIRVDGD-P--ALRDEMMQR-SGRRTVPQIFIGDVHVGGCDDLYALDRE 72 (79)
T ss_pred HcCCCcEEEEecCC-H--HHHHHHHHH-hCCCCcCEEEECCEEEcChHHHHHHHHc
Confidence 57899999888754 1 234566655 4688999999999888877776665443
No 79
>KOG3027|consensus
Probab=90.00 E-value=1.1 Score=33.06 Aligned_cols=57 Identities=18% Similarity=0.281 Sum_probs=41.8
Q ss_pred chhhhcccCCCCCcCEEEECCeEeechHHHHHHHHHhhC-CCCC-ChHHHHHHHHHHHHHHHH
Q psy9879 29 IPFFALLDYPFGKVPCIEINGVQYHQSRAIGRYLARQAG-LYGM-DGPEMDMKIDMIVDTIDD 89 (115)
Q Consensus 29 ~~~~~~~~nP~gqvPvL~~~g~~l~eS~AIl~YL~~~~~-l~p~-d~~e~~a~v~~~~~~~~d 89 (115)
..||. .|-|+||.|..|.++++|-.+|..+...+-. |... +..+ ++.++..++.++.
T Consensus 58 Naefm---SP~G~vPllr~g~~~~aef~pIV~fVeak~~~l~s~lsE~q-kadmra~vslVen 116 (257)
T KOG3027|consen 58 NAEFM---SPGGKVPLLRIGKTLFAEFEPIVDFVEAKGVTLTSWLSEDQ-KADMRAYVSLVEN 116 (257)
T ss_pred Ccccc---CCCCCCceeeecchhhhhhhHHHHHHHHhccchhhhhhhHH-HHHHHHHHHHHHH
Confidence 34564 7999999999999999999999999988863 3222 4455 6666666665543
No 80
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=89.94 E-value=0.82 Score=27.14 Aligned_cols=55 Identities=15% Similarity=0.018 Sum_probs=37.5
Q ss_pred cCCCcceEEEecCCCCCCCCchhhhcccCCCCCcCEEEECCeEeechHHHHHHHHH
Q psy9879 9 ADNVKVRSQGVNTSLQRSVKIPFFALLDYPFGKVPCIEINGVQYHQSRAIGRYLAR 64 (115)
Q Consensus 9 ~~gi~fe~~~v~~~~~~~~~~~~~~~~~nP~gqvPvL~~~g~~l~eS~AIl~YL~~ 64 (115)
+.+++|+.+.++..+.+.....++.+. +....+|++..+|..+..+..+..+..+
T Consensus 22 ~~~~~~~~~~v~~~~~~~~~~~~~~~~-~g~~~~P~v~~~g~~igg~~~~~~~~~~ 76 (82)
T cd03419 22 ELGVKPAVVELDQHEDGSEIQDYLQEL-TGQRTVPNVFIGGKFIGGCDDLMALHKS 76 (82)
T ss_pred HcCCCcEEEEEeCCCChHHHHHHHHHH-hCCCCCCeEEECCEEEcCHHHHHHHHHc
Confidence 457788888888762111112334444 4677899999999999998888876644
No 81
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=89.39 E-value=1.1 Score=27.59 Aligned_cols=54 Identities=9% Similarity=0.095 Sum_probs=37.4
Q ss_pred CCcceEEEecCCCCCCCCchhhhcccC-CCCCcCEEEECCeEeechHHHHHHHHHhhC
Q psy9879 11 NVKVRSQGVNTSLQRSVKIPFFALLDY-PFGKVPCIEINGVQYHQSRAIGRYLARQAG 67 (115)
Q Consensus 11 gi~fe~~~v~~~~~~~~~~~~~~~~~n-P~gqvPvL~~~g~~l~eS~AIl~YL~~~~~ 67 (115)
+++|+.+.++-. + ....++.+... +...||++..+|..+..+..|..|+.++++
T Consensus 29 ~i~~~~idi~~~--~-~~~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~~~~~~~~ 83 (86)
T TIGR02183 29 DFEFRYIDIHAE--G-ISKADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQLVKENFD 83 (86)
T ss_pred CCcEEEEECCCC--H-HHHHHHHHHhCCCCCCcCeEEECCEEecCHHHHHHHHHhccc
Confidence 567777666532 1 11334443322 236899999999999999999999988765
No 82
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=88.86 E-value=1.1 Score=26.58 Aligned_cols=54 Identities=19% Similarity=0.068 Sum_probs=35.1
Q ss_pred CCCc--ceEEEecCCCCCCCCchhhhcccCCCCCcCEEEECCeEeechHHHHHHHHH
Q psy9879 10 DNVK--VRSQGVNTSLQRSVKIPFFALLDYPFGKVPCIEINGVQYHQSRAIGRYLAR 64 (115)
Q Consensus 10 ~gi~--fe~~~v~~~~~~~~~~~~~~~~~nP~gqvPvL~~~g~~l~eS~AIl~YL~~ 64 (115)
.+++ |+.+.++..+........+.+. +....+|.+..+|..+..+..+.++..+
T Consensus 22 ~~i~~~~~~~~v~~~~~~~~~~~~l~~~-~g~~~vP~v~i~g~~igg~~~~~~~~~~ 77 (84)
T TIGR02180 22 LNVKPAYEVVELDQLSNGSEIQDYLEEI-TGQRTVPNIFINGKFIGGCSDLLALYKS 77 (84)
T ss_pred cCCCCCCEEEEeeCCCChHHHHHHHHHH-hCCCCCCeEEECCEEEcCHHHHHHHHHc
Confidence 4566 8888887751111112233333 5667899999999999998877776543
No 83
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=88.64 E-value=0.49 Score=27.94 Aligned_cols=37 Identities=16% Similarity=0.306 Sum_probs=24.3
Q ss_pred cCCCcceEEEecCCCCCCCCchhhhcccCCCCCcCEEEECCe
Q psy9879 9 ADNVKVRSQGVNTSLQRSVKIPFFALLDYPFGKVPCIEINGV 50 (115)
Q Consensus 9 ~~gi~fe~~~v~~~~~~~~~~~~~~~~~nP~gqvPvL~~~g~ 50 (115)
++|++|+.+.++-. .....++ +. ++...||++..+|.
T Consensus 21 ~~~i~~~~~di~~~---~~~~~~~-~~-~g~~~vP~v~~~g~ 57 (72)
T TIGR02194 21 EHGIAFEEINIDEQ---PEAIDYV-KA-QGFRQVPVIVADGD 57 (72)
T ss_pred HCCCceEEEECCCC---HHHHHHH-HH-cCCcccCEEEECCC
Confidence 57999999877643 1122333 34 47789999998553
No 84
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=85.93 E-value=1.7 Score=27.56 Aligned_cols=51 Identities=10% Similarity=-0.040 Sum_probs=33.6
Q ss_pred cCCCcceEEEecCCCCCCCCchhhhcccCCCCCcCEEEECCeEeechHHHHH
Q psy9879 9 ADNVKVRSQGVNTSLQRSVKIPFFALLDYPFGKVPCIEINGVQYHQSRAIGR 60 (115)
Q Consensus 9 ~~gi~fe~~~v~~~~~~~~~~~~~~~~~nP~gqvPvL~~~g~~l~eS~AIl~ 60 (115)
..|++|+.+.||-.+.+.....++.+. +....+|.+..+|..+....-+..
T Consensus 30 ~~~i~~~~vdid~~~~~~~~~~~l~~~-tg~~tvP~Vfi~g~~iGG~ddl~~ 80 (99)
T TIGR02189 30 TLGVNPAVHEIDKEPAGKDIENALSRL-GCSPAVPAVFVGGKLVGGLENVMA 80 (99)
T ss_pred HcCCCCEEEEcCCCccHHHHHHHHHHh-cCCCCcCeEEECCEEEcCHHHHHH
Confidence 578999998888542211122344444 578899999999887777655444
No 85
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=85.40 E-value=0.44 Score=27.03 Aligned_cols=40 Identities=15% Similarity=0.120 Sum_probs=28.4
Q ss_pred cCCCcceEEEecCCCCCCCCchhhhcccCCCCCcCEEEECCeEe
Q psy9879 9 ADNVKVRSQGVNTSLQRSVKIPFFALLDYPFGKVPCIEINGVQY 52 (115)
Q Consensus 9 ~~gi~fe~~~v~~~~~~~~~~~~~~~~~nP~gqvPvL~~~g~~l 52 (115)
+.|++|+.+.++-. . ...+++.+. ....++|++..||..+
T Consensus 21 ~~~i~y~~~dv~~~-~--~~~~~l~~~-~g~~~~P~v~i~g~~I 60 (60)
T PF00462_consen 21 EKGIPYEEVDVDED-E--EAREELKEL-SGVRTVPQVFIDGKFI 60 (60)
T ss_dssp HTTBEEEEEEGGGS-H--HHHHHHHHH-HSSSSSSEEEETTEEE
T ss_pred HcCCeeeEcccccc-h--hHHHHHHHH-cCCCccCEEEECCEEC
Confidence 57889988888765 1 234555545 4778999999988654
No 86
>COG0435 ECM4 Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=80.11 E-value=2.1 Score=32.91 Aligned_cols=53 Identities=21% Similarity=0.154 Sum_probs=40.6
Q ss_pred CcCEEEEC---CeEeechHHHHHHHHHhhC--------CCCCChHHHHHHHHHHHHHH-HHHHhhccc
Q psy9879 41 KVPCIEIN---GVQYHQSRAIGRYLARQAG--------LYGMDGPEMDMKIDMIVDTI-DDMRQVHKC 96 (115)
Q Consensus 41 qvPvL~~~---g~~l~eS~AIl~YL~~~~~--------l~p~d~~e~~a~v~~~~~~~-~dl~~~~~~ 96 (115)
.||||.|. ..+-.||.-|++=+...++ |+|.. - +.+++.|.+++ ..+.+..++
T Consensus 129 TVPVLwDk~~~tIVnNES~eIirm~N~aFde~~~~~~dlyP~~--L-r~eId~~n~~Iy~~vNNGVYk 193 (324)
T COG0435 129 TVPVLWDKKTQTIVNNESAEIIRMFNSAFDEFGASAVDLYPEA--L-RTEIDELNKWIYDTVNNGVYK 193 (324)
T ss_pred eEEEEEecCCCeeecCCcHHHHHHHHHHHHHHhhhccccCCHH--H-HHHHHHHHhhhcccccCceee
Confidence 69999983 3567899999999887763 66653 3 78899999998 467777666
No 87
>KOG3028|consensus
Probab=77.45 E-value=19 Score=27.93 Aligned_cols=50 Identities=18% Similarity=0.215 Sum_probs=37.9
Q ss_pred CCCCCcCEEEE-CCeEeechHHHHHHHHHh---hCCCCCC-hHHHHHHHHHHHHHH
Q psy9879 37 YPFGKVPCIEI-NGVQYHQSRAIGRYLARQ---AGLYGMD-GPEMDMKIDMIVDTI 87 (115)
Q Consensus 37 nP~gqvPvL~~-~g~~l~eS~AIl~YL~~~---~~l~p~d-~~e~~a~v~~~~~~~ 87 (115)
.|.|++|+|+. +|..++.-.-|..+|... |.+-+.. ..+ .+....|+.++
T Consensus 45 s~sg~LP~l~~~ng~~va~~~~iv~~L~k~~~ky~~d~dl~~kq-~a~~~a~~sll 99 (313)
T KOG3028|consen 45 SPSGKLPYLITDNGTKVAGPVKIVQFLKKNTKKYNLDADLSAKQ-LADTLAFMSLL 99 (313)
T ss_pred CCCCCCCeEEecCCceeccHHHHHHHHHHhcccCCcCccHHHHH-HHHHHHHHHHH
Confidence 58999999998 568999999999999873 3333332 455 77788888776
No 88
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=75.38 E-value=7.6 Score=23.93 Aligned_cols=49 Identities=8% Similarity=-0.006 Sum_probs=33.0
Q ss_pred cCCCcceEEEecCCCCCCCCchhhhcccCCCCCcCEEEECCeEeechHHHHHH
Q psy9879 9 ADNVKVRSQGVNTSLQRSVKIPFFALLDYPFGKVPCIEINGVQYHQSRAIGRY 61 (115)
Q Consensus 9 ~~gi~fe~~~v~~~~~~~~~~~~~~~~~nP~gqvPvL~~~g~~l~eS~AIl~Y 61 (115)
+.|++|+.+.++-. .....++.+. +...++|++..+|..+.....+...
T Consensus 35 ~~~i~y~~idv~~~---~~~~~~l~~~-~g~~tvP~vfi~g~~iGG~~~l~~l 83 (90)
T cd03028 35 QLGVDFGTFDILED---EEVRQGLKEY-SNWPTFPQLYVNGELVGGCDIVKEM 83 (90)
T ss_pred HcCCCeEEEEcCCC---HHHHHHHHHH-hCCCCCCEEEECCEEEeCHHHHHHH
Confidence 46889998877532 1123444444 4677899999999888777666653
No 89
>PHA03050 glutaredoxin; Provisional
Probab=70.98 E-value=9.8 Score=24.58 Aligned_cols=51 Identities=8% Similarity=-0.056 Sum_probs=32.4
Q ss_pred cCCC---cceEEEecCCCCCCCCchhhhcccCCCCCcCEEEECCeEeechHHHHH
Q psy9879 9 ADNV---KVRSQGVNTSLQRSVKIPFFALLDYPFGKVPCIEINGVQYHQSRAIGR 60 (115)
Q Consensus 9 ~~gi---~fe~~~v~~~~~~~~~~~~~~~~~nP~gqvPvL~~~g~~l~eS~AIl~ 60 (115)
+.|+ +|+.+.++-...+.....++.+. +-..+||.+..+|..+.-...+..
T Consensus 35 ~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~-tG~~tVP~IfI~g~~iGG~ddl~~ 88 (108)
T PHA03050 35 KFSFKRGAYEIVDIKEFKPENELRDYFEQI-TGGRTVPRIFFGKTSIGGYSDLLE 88 (108)
T ss_pred HcCCCcCCcEEEECCCCCCCHHHHHHHHHH-cCCCCcCEEEECCEEEeChHHHHH
Confidence 4566 78888887531111224555555 466789999999887776655444
No 90
>KOG2903|consensus
Probab=67.38 E-value=2.7 Score=32.06 Aligned_cols=53 Identities=17% Similarity=0.077 Sum_probs=39.2
Q ss_pred CcCEEEEC---CeEeechHHHHHHHHHhh------------CCCCCChHHHHHHHHHHHHHHH-HHHhhccc
Q psy9879 41 KVPCIEIN---GVQYHQSRAIGRYLARQA------------GLYGMDGPEMDMKIDMIVDTID-DMRQVHKC 96 (115)
Q Consensus 41 qvPvL~~~---g~~l~eS~AIl~YL~~~~------------~l~p~d~~e~~a~v~~~~~~~~-dl~~~~~~ 96 (115)
.||||-|- ..+-.||.-|+|.+...+ .|+|.+ - +++++.|-+|+. .+.+..++
T Consensus 123 TVPVLWD~k~ktIVnNES~eIIr~fNs~f~ef~~~~e~~~lDL~P~~--L-~~~Ide~N~wvy~~INNGVYk 191 (319)
T KOG2903|consen 123 TVPVLWDLKTKTIVNNESSEIIRMFNSAFDEFNGIAENPVLDLYPSS--L-RAQIDETNSWVYDKINNGVYK 191 (319)
T ss_pred EEEEEEccccceeecCchHHHHHHHhhhhhhhhccccCCccccCCHH--H-HHHHhhhhceecccccCceee
Confidence 59999983 467889999999998433 166653 3 788999999984 56666655
No 91
>PF09098 Dehyd-heme_bind: Quinohemoprotein amine dehydrogenase A, alpha subunit, haem binding; InterPro: IPR015182 Quinohemoprotein amine dehydrogenases (QHNDH) 1.4.99 from EC) are enzymes produced in the periplasmic space of certain Gram-negative bacteria, such as Paracoccus denitrificans and Pseudomonas putida, in response to primary amines, including n-butylamine and benzylamine. QHNDH catalyses the oxidative deamination of a wide range of aliphatic and aromatic amines through formation of a Schiff-base intermediate involving one of the quinone O atoms []. Catalysis requires the presence of a novel redox cofactor, cysteine tryptophylquinone (CTQ). CTQ is derived from the post-translational modification of specific residues, which involves the oxidation of the indole ring of a tryptophan residue to form tryptophylquinone, followed by covalent cross-linking with a cysteine residue []. There is one CTQ per subunit in QHNDH. In addition to CTQ, two haem c cofactors are present in QHNDH that mediate the transfer of the substrate-derived electrons from CTQ to an external electron acceptor, cytochrome c-550 [, ]. QHNDH is a heterotrimer of alpha, beta and gamma subunits. The alpha and beta subunits contain signal peptides necessary for the translocation of QHNDH to the periplasm. The alpha subunit is composed of four domains - domain 1 forming a dihaem cytochrome, and domains 2-4 forming antiparallel beta-barrel structures; the beta subunit is a 7-bladed beta-propeller that provides part of the active site; and the small, catalytic gamma subunit contains the novel cross-linked CTQ cofactor, in addition to additional thioester cross-links between Cys and Asp/Glu residues that encage CTQ. The gamma subunit assumes a globular secondary structure with two short alpha-helices having many turns and bends []. This entry represents the dihaem cytochrome c domain of the QHNDH alpha subunit. The domain contain two cysteine residues that are involved in thioether linkages to haem []. ; PDB: 1PBY_A 1JJU_A 1JMZ_A 1JMX_A.
Probab=65.92 E-value=4.1 Score=28.77 Aligned_cols=18 Identities=39% Similarity=0.560 Sum_probs=13.2
Q ss_pred chHHHHHHHHHhhCCCCC
Q psy9879 54 QSRAIGRYLARQAGLYGM 71 (115)
Q Consensus 54 eS~AIl~YL~~~~~l~p~ 71 (115)
|-.||++||++++||.|.
T Consensus 55 er~avVkYLAd~~GLap~ 72 (167)
T PF09098_consen 55 ERRAVVKYLADTQGLAPS 72 (167)
T ss_dssp HHHHHHHHHHHHT---CG
T ss_pred HHHHHHHHHHHccCCCch
Confidence 469999999999998875
No 92
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=63.67 E-value=18 Score=22.66 Aligned_cols=48 Identities=13% Similarity=-0.024 Sum_probs=30.6
Q ss_pred cCCCcceEEEecCCCCCCCCchhhhcccCCCCCcCEEEECCeEeechHHHHH
Q psy9879 9 ADNVKVRSQGVNTSLQRSVKIPFFALLDYPFGKVPCIEINGVQYHQSRAIGR 60 (115)
Q Consensus 9 ~~gi~fe~~~v~~~~~~~~~~~~~~~~~nP~gqvPvL~~~g~~l~eS~AIl~ 60 (115)
+.|++|+.+.|+-. .....++.+. +....+|.+..+|..+.....+..
T Consensus 39 ~~~i~~~~~di~~~---~~~~~~l~~~-tg~~tvP~vfi~g~~iGG~ddl~~ 86 (97)
T TIGR00365 39 ACGVPFAYVNVLED---PEIRQGIKEY-SNWPTIPQLYVKGEFVGGCDIIME 86 (97)
T ss_pred HcCCCEEEEECCCC---HHHHHHHHHH-hCCCCCCEEEECCEEEeChHHHHH
Confidence 57899987766422 1223344444 466799999999887766655444
No 93
>cd03189 GST_C_GTT1_like GST_C family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endopl
Probab=49.86 E-value=23 Score=22.16 Aligned_cols=23 Identities=9% Similarity=-0.103 Sum_probs=17.5
Q ss_pred CCChHHHHHHHHHHHHHH-HHHHhh
Q psy9879 70 GMDGPEMDMKIDMIVDTI-DDMRQV 93 (115)
Q Consensus 70 p~d~~e~~a~v~~~~~~~-~dl~~~ 93 (115)
|.++.+ ++++++|+.+. +.++..
T Consensus 2 ~~~~~~-ra~~~~wl~~~~~~~~~~ 25 (119)
T cd03189 2 PPDTAE-YADYLYWLHFAEGSLMPP 25 (119)
T ss_pred CCCHHH-HHHHHHHHHHHhHhhhHH
Confidence 567889 99999999987 345543
No 94
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=48.91 E-value=31 Score=23.66 Aligned_cols=48 Identities=17% Similarity=0.076 Sum_probs=31.8
Q ss_pred cCCCcceEEEecCCCCCCCCchhhhcccCC----CCCcCEEEECCeEeechHHHHH
Q psy9879 9 ADNVKVRSQGVNTSLQRSVKIPFFALLDYP----FGKVPCIEINGVQYHQSRAIGR 60 (115)
Q Consensus 9 ~~gi~fe~~~v~~~~~~~~~~~~~~~~~nP----~gqvPvL~~~g~~l~eS~AIl~ 60 (115)
.+||+|+.+.|+.. ....+++.+. .. ...+|.+..+|..|...-.+.+
T Consensus 28 ~~~V~~~e~DVs~~---~~~~~EL~~~-~g~~~~~~tvPqVFI~G~~IGG~del~~ 79 (147)
T cd03031 28 SFRVKFDERDVSMD---SGFREELREL-LGAELKAVSLPRVFVDGRYLGGAEEVLR 79 (147)
T ss_pred HCCCcEEEEECCCC---HHHHHHHHHH-hCCCCCCCCCCEEEECCEEEecHHHHHH
Confidence 56889988777653 1223444433 22 3689999999988887766655
No 95
>TIGR02681 phage_pRha phage regulatory protein, rha family. Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that pRha is a phage regulatory protein.
Probab=47.88 E-value=24 Score=22.95 Aligned_cols=25 Identities=8% Similarity=0.135 Sum_probs=20.2
Q ss_pred cCEEE-ECCeEeechHHHHHHHHHhh
Q psy9879 42 VPCIE-INGVQYHQSRAIGRYLARQA 66 (115)
Q Consensus 42 vPvL~-~~g~~l~eS~AIl~YL~~~~ 66 (115)
+|.+. .+|.+.+.|..|+++...+|
T Consensus 2 ~~~v~~~~~~~~ttS~~IAe~fgK~H 27 (108)
T TIGR02681 2 FPKVFTKRNQVVTDSLTMAQMFGKRH 27 (108)
T ss_pred CceEEEECCEEEEeHHHHHHHHCcch
Confidence 35444 48999999999999998876
No 96
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=45.39 E-value=50 Score=20.68 Aligned_cols=46 Identities=9% Similarity=-0.059 Sum_probs=28.9
Q ss_pred cCCCcceEEEecCCCCCCCCchhhhccc---CCCCCcCEEEECCeEeechHH
Q psy9879 9 ADNVKVRSQGVNTSLQRSVKIPFFALLD---YPFGKVPCIEINGVQYHQSRA 57 (115)
Q Consensus 9 ~~gi~fe~~~v~~~~~~~~~~~~~~~~~---nP~gqvPvL~~~g~~l~eS~A 57 (115)
.+||+|+.+.|+.. +....+..+.. ++...+|-+..++..+...--
T Consensus 28 ~k~I~f~eiDI~~d---~~~r~em~~~~~~~~g~~tvPQIFi~~~~iGg~dd 76 (92)
T cd03030 28 AKKIEFEEVDISMN---EENRQWMRENVPNENGKPLPPQIFNGDEYCGDYEA 76 (92)
T ss_pred HCCCceEEEecCCC---HHHHHHHHHhcCCCCCCCCCCEEEECCEEeeCHHH
Confidence 57899999888764 12334444331 134789988777777765533
No 97
>KOG1752|consensus
Probab=42.04 E-value=75 Score=20.49 Aligned_cols=51 Identities=14% Similarity=0.008 Sum_probs=33.2
Q ss_pred CCCcceEEEecCCCCCCCCchhhhcccCCCCCcCEEEECCeEeechHHHHHH
Q psy9879 10 DNVKVRSQGVNTSLQRSVKIPFFALLDYPFGKVPCIEINGVQYHQSRAIGRY 61 (115)
Q Consensus 10 ~gi~fe~~~v~~~~~~~~~~~~~~~~~nP~gqvPvL~~~g~~l~eS~AIl~Y 61 (115)
.|+++..+.+|-.+.+.+-...+.+. .-..+||.+..+|..+.-..-+..+
T Consensus 37 ~~v~~~vvELD~~~~g~eiq~~l~~~-tg~~tvP~vFI~Gk~iGG~~dl~~l 87 (104)
T KOG1752|consen 37 LGVNPKVVELDEDEDGSEIQKALKKL-TGQRTVPNVFIGGKFIGGASDLMAL 87 (104)
T ss_pred CCCCCEEEEccCCCCcHHHHHHHHHh-cCCCCCCEEEECCEEEcCHHHHHHH
Confidence 57888888888763333222223323 3556999999999888777666654
No 98
>PRK09266 hypothetical protein; Provisional
Probab=37.29 E-value=23 Score=26.15 Aligned_cols=60 Identities=20% Similarity=0.092 Sum_probs=41.4
Q ss_pred cccccCCCcceEEEecCCCCCCCCchhhhcccCCCCCcCEEEECCeEeechHHHHHHHHHhh
Q psy9879 5 DGSIADNVKVRSQGVNTSLQRSVKIPFFALLDYPFGKVPCIEINGVQYHQSRAIGRYLARQA 66 (115)
Q Consensus 5 ~~~~~~gi~fe~~~v~~~~~~~~~~~~~~~~~nP~gqvPvL~~~g~~l~eS~AIl~YL~~~~ 66 (115)
+.+.+.|++++...++..+- ..-.+-|. .|.-.|-+||-..++..+.....+.+.|.+.|
T Consensus 199 ~~~~~~g~~v~e~~i~~~eL-~~adevfl-tnSl~gi~pV~~i~~~~~~~~~~~~~~l~~~~ 258 (266)
T PRK09266 199 RGLERLGIPQRTRPVTLADL-GRFAGAFA-CNAWRGQRAVSAIDDVALPDSHALLELLRRAY 258 (266)
T ss_pred HHHHHcCCeeEEEECCHHHH-HHhhHhhh-hcCccceEEEEEECCEECCCCchHHHHHHHHH
Confidence 34556788988888887521 12234455 55567999999988887765667877777665
No 99
>cd03208 GST_C_Alpha GST_C family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Alpha subfamily is composed of vertebrate GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GS
Probab=36.12 E-value=85 Score=20.65 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q psy9879 74 PEMDMKIDMIVDTIDDMRQVHK 95 (115)
Q Consensus 74 ~e~~a~v~~~~~~~~dl~~~~~ 95 (115)
.+ ++.+++.++.+.|++..++
T Consensus 2 ~e-~a~iD~i~~~v~D~~~~~~ 22 (137)
T cd03208 2 KE-RALIDMYVEGTADLMEMIL 22 (137)
T ss_pred hH-HHHHHHHHHHHHHHHHHHH
Confidence 35 7888999998888887665
No 100
>PF14420 Clr5: Clr5 domain
Probab=35.96 E-value=51 Score=18.47 Aligned_cols=27 Identities=4% Similarity=0.079 Sum_probs=18.0
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHHHHH
Q psy9879 56 RAIGRYLARQAGLYGMDGPEMDMKIDMI 83 (115)
Q Consensus 56 ~AIl~YL~~~~~l~p~d~~e~~a~v~~~ 83 (115)
..|.+++.+.||+.++...= +.++..|
T Consensus 24 ~~v~~~M~~~~~F~at~rqy-~~r~~~W 50 (54)
T PF14420_consen 24 EEVMEIMKEEHGFKATKRQY-KRRFKKW 50 (54)
T ss_pred HHHHHHHHHHhCCCcCHHHH-HHHHHHc
Confidence 45777888899988874444 4555554
No 101
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=35.60 E-value=39 Score=24.13 Aligned_cols=19 Identities=21% Similarity=0.361 Sum_probs=17.5
Q ss_pred CeEeechHHHHHHHHHhhC
Q psy9879 49 GVQYHQSRAIGRYLARQAG 67 (115)
Q Consensus 49 g~~l~eS~AIl~YL~~~~~ 67 (115)
+..|++|..|-+|+.++|+
T Consensus 155 d~lIaDs~~I~~y~~~~y~ 173 (185)
T PF09314_consen 155 DRLIADSKGIQDYIKERYG 173 (185)
T ss_pred CEEEEcCHHHHHHHHHHcC
Confidence 5689999999999999997
No 102
>KOG0388|consensus
Probab=33.03 E-value=79 Score=28.01 Aligned_cols=57 Identities=14% Similarity=0.110 Sum_probs=39.2
Q ss_pred EeechHHHHHHHHHhhCCCCCC--hHHHHHHHHHHHHHHHHHHhhccc-----CChhhHHHHHHH
Q psy9879 51 QYHQSRAIGRYLARQAGLYGMD--GPEMDMKIDMIVDTIDDMRQVHKC-----DKDATQNVWLRW 108 (115)
Q Consensus 51 ~l~eS~AIl~YL~~~~~l~p~d--~~e~~a~v~~~~~~~~dl~~~~~~-----~~~~~~~~~~~~ 108 (115)
.-.||.+.+.||++.++.+|.- ... ...+..|..-+..+.+.|.. ...+++-..+-|
T Consensus 599 KTVQsisvlAhLaE~~nIwGPFLVVtp-aStL~NWaqEisrFlP~~k~lpywGs~~eRkiLrKfw 662 (1185)
T KOG0388|consen 599 KTVQSISVLAHLAETHNIWGPFLVVTP-ASTLHNWAQEISRFLPSFKVLPYWGSPSERKILRKFW 662 (1185)
T ss_pred hhHHHHHHHHHHHHhccCCCceEEeeh-HHHHhHHHHHHHHhCccceeecCcCChhhhHHHHHhc
Confidence 4568999999999999877642 223 56678899888888877653 333444444445
No 103
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=31.80 E-value=79 Score=16.13 Aligned_cols=25 Identities=16% Similarity=0.313 Sum_probs=19.7
Q ss_pred CCCcCEEEECCeEeechHHHHHHHH
Q psy9879 39 FGKVPCIEINGVQYHQSRAIGRYLA 63 (115)
Q Consensus 39 ~gqvPvL~~~g~~l~eS~AIl~YL~ 63 (115)
.|.+|....|+..++....|.+|+.
T Consensus 24 ~g~i~~~~~g~~~~~~~~~l~~~~~ 48 (49)
T TIGR01764 24 EGELPAYRVGRHYRIPREDVDEYLE 48 (49)
T ss_pred cCCCCeEEeCCeEEEeHHHHHHHHh
Confidence 5778887778888888888888774
No 104
>PF10850 DUF2653: Protein of unknown function (DUF2653); InterPro: IPR020516 This entry contains proteins with no known function.
Probab=31.01 E-value=48 Score=21.12 Aligned_cols=18 Identities=22% Similarity=0.244 Sum_probs=14.3
Q ss_pred hHHHHHHHHHhhCCCCCC
Q psy9879 55 SRAIGRYLARQAGLYGMD 72 (115)
Q Consensus 55 S~AIl~YL~~~~~l~p~d 72 (115)
..|||-|++++.+..|.+
T Consensus 11 iNAvCl~~A~~~~i~P~d 28 (91)
T PF10850_consen 11 INAVCLHIAERKGIQPED 28 (91)
T ss_pred HHHHHHHHHHhcCCCccc
Confidence 479999999998766643
No 105
>cd03196 GST_C_5 GST_C family, unknown subfamily 5; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=30.46 E-value=77 Score=20.05 Aligned_cols=15 Identities=7% Similarity=-0.004 Sum_probs=11.6
Q ss_pred ChHHHHHHHHHHHHHH
Q psy9879 72 DGPEMDMKIDMIVDTI 87 (115)
Q Consensus 72 d~~e~~a~v~~~~~~~ 87 (115)
|+.. ++++++|+.+.
T Consensus 3 ~~~~-~~~~~~~~~~~ 17 (115)
T cd03196 3 DPAA-LKEMLALIAEN 17 (115)
T ss_pred chHH-HHHHHHHHHHc
Confidence 5667 88888888876
No 106
>KOG3248|consensus
Probab=29.09 E-value=1.3e+02 Score=24.01 Aligned_cols=58 Identities=16% Similarity=0.052 Sum_probs=41.5
Q ss_pred CeEeechHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHHhhccc-----CChhhHHHHHHHH
Q psy9879 49 GVQYHQSRAIGRYLARQAGLYGMDGPEMDMKIDMIVDTIDDMRQVHKC-----DKDATQNVWLRWL 109 (115)
Q Consensus 49 g~~l~eS~AIl~YL~~~~~l~p~d~~e~~a~v~~~~~~~~dl~~~~~~-----~~~~~~~~~~~~~ 109 (115)
+.++-||.||-+-|.++..-+ ..+| +|++-++..-.-.+|..+++ ++-.+|+..++..
T Consensus 213 EctlKeSAaiNqiLGrRWH~L--SrEE-QAKYyElArKerqlH~qlYP~WSARdNYgKKkKrkReK 275 (421)
T KOG3248|consen 213 ECTLKESAAINQILGRRWHAL--SREE-QAKYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK 275 (421)
T ss_pred HhhhhhHHHHHHHHhHHHhhh--hHHH-HHHHHHHHHHHHHHHHHhcCCcchhhhhhhhhhhhhhc
Confidence 346889999999999985322 4577 88888887777778877776 5555666555554
No 107
>cd03182 GST_C_GTT2_like GST_C family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensiti
Probab=27.46 E-value=89 Score=19.22 Aligned_cols=19 Identities=16% Similarity=-0.036 Sum_probs=14.6
Q ss_pred ChHHHHHHHHHHHHHH-HHHH
Q psy9879 72 DGPEMDMKIDMIVDTI-DDMR 91 (115)
Q Consensus 72 d~~e~~a~v~~~~~~~-~dl~ 91 (115)
|+.+ ++++++|+.++ ..+.
T Consensus 1 d~~~-ra~~~~w~~~~~~~~~ 20 (117)
T cd03182 1 TPLE-RAQIEMWQRRAELQGL 20 (117)
T ss_pred CHHH-HHHHHHHHHHHHHHHH
Confidence 4667 99999999986 4554
No 108
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=27.19 E-value=92 Score=24.82 Aligned_cols=49 Identities=14% Similarity=0.110 Sum_probs=30.4
Q ss_pred ccCCCcceEEEecCCCCCCCCchhhh-cc-------cCCCCCcCEEEECCeEeechHHHHH
Q psy9879 8 IADNVKVRSQGVNTSLQRSVKIPFFA-LL-------DYPFGKVPCIEINGVQYHQSRAIGR 60 (115)
Q Consensus 8 ~~~gi~fe~~~v~~~~~~~~~~~~~~-~~-------~nP~gqvPvL~~~g~~l~eS~AIl~ 60 (115)
-++||+|+.+.|+-. . ...++. +. ......||++..||..+..-.....
T Consensus 23 ~~~gi~~~~idi~~~--~--~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf~~l~~ 79 (410)
T PRK12759 23 GANDIPFTQISLDDD--V--KRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGYDNLMA 79 (410)
T ss_pred HHCCCCeEEEECCCC--h--hHHHHHHHHhhccccccCCCCccCeEEECCEEEeCchHHHH
Confidence 357999999888733 1 112221 11 1356789999988877766655544
No 109
>PF12728 HTH_17: Helix-turn-helix domain
Probab=27.02 E-value=1.1e+02 Score=16.26 Aligned_cols=28 Identities=25% Similarity=0.387 Sum_probs=22.1
Q ss_pred CCCCcCEEEECCeEeechHHHHHHHHHh
Q psy9879 38 PFGKVPCIEINGVQYHQSRAIGRYLARQ 65 (115)
Q Consensus 38 P~gqvPvL~~~g~~l~eS~AIl~YL~~~ 65 (115)
-.|.+|....|+...+.-..|.+|+.++
T Consensus 23 ~~g~i~~~~~g~~~~~~~~~l~~~~~~~ 50 (51)
T PF12728_consen 23 RQGKIPPFKIGRKWRIPKSDLDRWLERR 50 (51)
T ss_pred HcCCCCeEEeCCEEEEeHHHHHHHHHhC
Confidence 3578888887787888888888888764
No 110
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=26.82 E-value=1.2e+02 Score=16.72 Aligned_cols=18 Identities=39% Similarity=0.434 Sum_probs=12.8
Q ss_pred CCCCCcCEEEECCeEeec
Q psy9879 37 YPFGKVPCIEINGVQYHQ 54 (115)
Q Consensus 37 nP~gqvPvL~~~g~~l~e 54 (115)
.-...+|++..+|..++.
T Consensus 48 ~~i~~vPti~i~~~~~~~ 65 (67)
T cd02973 48 YGVMSVPAIVINGKVEFV 65 (67)
T ss_pred cCCcccCEEEECCEEEEe
Confidence 344579999988876653
No 111
>cd03210 GST_C_Pi GST_C family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an incre
Probab=25.66 E-value=1.2e+02 Score=19.33 Aligned_cols=21 Identities=33% Similarity=0.449 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q psy9879 74 PEMDMKIDMIVDTIDDMRQVHK 95 (115)
Q Consensus 74 ~e~~a~v~~~~~~~~dl~~~~~ 95 (115)
.+ ++++++.++.+.|++..+.
T Consensus 2 ~e-~~~vd~~~~~~~d~~~~~~ 22 (126)
T cd03210 2 KE-AALIDMVNDGVEDLRLKYV 22 (126)
T ss_pred hH-HHHHHHHHHHHHHHHHHHH
Confidence 35 7778888888888777654
No 112
>PRK10667 Hha toxicity attenuator; Provisional
Probab=23.54 E-value=1e+02 Score=20.59 Aligned_cols=33 Identities=18% Similarity=0.253 Sum_probs=19.2
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHH
Q psy9879 57 AIGRYLARQAGLYGMDGPEMDMKIDMIVDTIDDM 90 (115)
Q Consensus 57 AIl~YL~~~~~l~p~d~~e~~a~v~~~~~~~~dl 90 (115)
-|=+||++.|.|++..... ...+..|...-..+
T Consensus 75 ~ideYLDeTy~LF~sy~I~-~~dl~~W~k~~~~L 107 (122)
T PRK10667 75 QIDEYLDDTYMLFSSYGIN-DQDLQKWRKSGNRL 107 (122)
T ss_pred HHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHHH
Confidence 4557777777777664444 44455665544433
No 113
>cd03192 GST_C_Sigma_like GST_C family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi, and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition
Probab=23.39 E-value=82 Score=19.01 Aligned_cols=20 Identities=35% Similarity=0.546 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHhhccc
Q psy9879 77 DMKIDMIVDTIDDMRQVHKC 96 (115)
Q Consensus 77 ~a~v~~~~~~~~dl~~~~~~ 96 (115)
++++++|++..+|++..+.+
T Consensus 3 ~~~v~~~~~~~~d~~~~~~~ 22 (104)
T cd03192 3 AARVDALVDTIADLRAEFAK 22 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 78899999999888877654
No 114
>cd00449 PLPDE_IV PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV). This D-amino acid superfamily, one of five classes of PLPDE, consists of branched-chain amino acid aminotransferases (BCAT), D-amino acid transferases (DAAT), and 4-amino-4-deoxychorismate lyases (ADCL). BCAT catalyzes the reversible transamination reaction between the L-branched-chain amino and alpha-keto acids. DAAT catalyzes the synthesis of D-glutamic acid and D-alanine, and ADCL converts 4-amino-4-deoxychorismate to p-aminobenzoate and pyruvate. Except for a few enzymes, i. e., Escherichia coli and Salmonella BCATs, which are homohexamers arranged as a double trimer, the class IV PLPDEs are homodimers. Homodimer formation is required for catalytic activity.
Probab=22.80 E-value=47 Score=24.00 Aligned_cols=58 Identities=16% Similarity=0.106 Sum_probs=37.7
Q ss_pred ccccCCCcceEEEecCCCCCCCCchhhhcccCCCCCcCEEEECCeEe--echHHHHHHHHHh
Q psy9879 6 GSIADNVKVRSQGVNTSLQRSVKIPFFALLDYPFGKVPCIEINGVQY--HQSRAIGRYLARQ 65 (115)
Q Consensus 6 ~~~~~gi~fe~~~v~~~~~~~~~~~~~~~~~nP~gqvPvL~~~g~~l--~eS~AIl~YL~~~ 65 (115)
-+.+.|++++...+...+- .+-.+-|+ .|...|-+||-..++..+ .+...|.+.|.+.
T Consensus 196 ~~~~~g~~v~e~~i~~~dL-~~adevfl-~ns~~gv~pV~~i~~~~~~~~~~~~~~~~l~~~ 255 (256)
T cd00449 196 LAKELGIKVEERPISLDEL-YAADEVFL-TGTAAEVTPVTEIDGRGIGDGKPGPVTRKLREL 255 (256)
T ss_pred HHHHcCCeEEEEecCHHHH-hhCCEEEE-ccccceEEEEEEECCeecCCCCCCHHHHHHHHh
Confidence 3456788888888877521 12334455 556778899998887766 4556777766543
No 115
>cd03209 GST_C_Mu GST_C family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the m
Probab=22.10 E-value=82 Score=19.88 Aligned_cols=20 Identities=20% Similarity=0.308 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHhhccc
Q psy9879 77 DMKIDMIVDTIDDMRQVHKC 96 (115)
Q Consensus 77 ~a~v~~~~~~~~dl~~~~~~ 96 (115)
++++++.++.+.|++..+.+
T Consensus 3 ~~~id~~~~~~~d~~~~~~~ 22 (121)
T cd03209 3 RIRVDMLEQQAMDLRMGLAR 22 (121)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999987654
No 116
>PF10757 YbaJ: Biofilm formation regulator YbaJ; InterPro: IPR019693 YbaJ regulates biofilm formation. It also has an important role in the regulation of motility in the biofilm. YbaJ functions in increasing conjugation, aggregation and decreasing the motility, resulting in an increase of biofilm [].
Probab=21.66 E-value=1.4e+02 Score=20.03 Aligned_cols=34 Identities=18% Similarity=0.217 Sum_probs=20.2
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHH
Q psy9879 57 AIGRYLARQAGLYGMDGPEMDMKIDMIVDTIDDMR 91 (115)
Q Consensus 57 AIl~YL~~~~~l~p~d~~e~~a~v~~~~~~~~dl~ 91 (115)
-|=+||++.|.|++..... ...+..|...-..+.
T Consensus 75 ~ideYLDeTy~LFssy~In-~~dL~~Wqk~~~~L~ 108 (122)
T PF10757_consen 75 LIDEYLDETYMLFSSYGIN-DSDLQKWQKSNQRLF 108 (122)
T ss_pred HHHHHHHHHHHHhcCccCC-HHHHHHHHHHHHHHH
Confidence 4567888877777664444 455666655544443
No 117
>PF00767 Poty_coat: Potyvirus coat protein; InterPro: IPR001592 This protease is found in genome polyproteins of potyviruses. The genome polyprotein contains: N-terminal protein (P1), helper component protease (3.4.22 from EC, HC-PRO), protein P3, 6KD protein (6K1), cytoplasmic inclusion protein (CI), 6KD protein 2 (6K2), genome-linked protein (VPG), nuclear inclusion protein A (3.4.22 from EC), nuclear inclusion protein B (2.7.7.48 from EC) and coat protein (CP). The coat protein is at the C terminus of the polyprotein.; GO: 0019028 viral capsid
Probab=21.11 E-value=2.2e+02 Score=21.21 Aligned_cols=86 Identities=12% Similarity=0.187 Sum_probs=44.0
Q ss_pred ecCCCCCCCCchhhhcccCCCCCcCEEEECCeEeechHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHHhhcccCC
Q psy9879 19 VNTSLQRSVKIPFFALLDYPFGKVPCIEINGVQYHQSRAIGRYLARQAGLYGMDGPEMDMKIDMIVDTIDDMRQVHKCDK 98 (115)
Q Consensus 19 v~~~~~~~~~~~~~~~~~nP~gqvPvL~~~g~~l~eS~AIl~YL~~~~~l~p~d~~e~~a~v~~~~~~~~dl~~~~~~~~ 98 (115)
|+.+..|...-|.+.+. ...-++| ..+|.++...--++.|--++..+.-. +|.-.|.-.|.+.+...|-...
T Consensus 5 V~~Gt~Gtf~vPrlk~~-s~km~~P--kvkGk~ilnl~hLl~Y~P~Q~disNt-----rATq~Qf~~W~e~Vk~~y~v~d 76 (237)
T PF00767_consen 5 VNAGTSGTFSVPRLKKI-SSKMRLP--KVKGKTILNLDHLLQYKPEQEDISNT-----RATQSQFEAWYEAVKKDYGVTD 76 (237)
T ss_pred cCCCCcceEeCCCcccc-cccccCC--cccccccccHHHHHhCChhhhhhhcc-----cchHHHHHHHHHHhhhhcCcCh
Confidence 33332333344555544 3455666 34566666655555555444433321 3333344444555556666655
Q ss_pred hhhHHHHHHHH-hhh
Q psy9879 99 DATQNVWLRWL-LCL 112 (115)
Q Consensus 99 ~~~~~~~~~~~-~~~ 112 (115)
+..+..+-.|. -|+
T Consensus 77 ~~m~iil~g~mvWCi 91 (237)
T PF00767_consen 77 DQMQIILNGLMVWCI 91 (237)
T ss_pred HHHHHHHHHHHHHhh
Confidence 56666666666 565
No 118
>cd03203 GST_C_Lambda GST_C family, Class Lambda subfamily; composed of plant-specific class Lambda GSTs. GSTs are cytosolic, usually dimeric, proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Lambda subfamily was recently discovered, together with dehydroascorbate reductases (DHARs), as two outlying groups of the GST superfamily in Arabidopsis thaliana, which contain conserved active site cysteines. Characterization of recombinant A. thaliana proteins show that Lambda class GSTs are monomeric, similar
Probab=20.87 E-value=1.2e+02 Score=19.32 Aligned_cols=19 Identities=16% Similarity=0.151 Sum_probs=13.9
Q ss_pred ChHHHHHHHHHHHHHHHHHH
Q psy9879 72 DGPEMDMKIDMIVDTIDDMR 91 (115)
Q Consensus 72 d~~e~~a~v~~~~~~~~dl~ 91 (115)
|+.+ |+.+++|+.+...+.
T Consensus 1 d~~~-ra~~~~~~~~~~~~~ 19 (120)
T cd03203 1 DPAK-REFADELLAYTDAFT 19 (120)
T ss_pred CHHH-HHHHHHHHHHHHHHH
Confidence 4667 999999988854343
Done!