BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy988
(408 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 109/242 (45%), Gaps = 27/242 (11%)
Query: 2 DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
DKT+++W +S +CL + H ++V F+P+ + +SGS D +R+W++ K
Sbjct: 91 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCL-- 147
Query: 61 NEVEGQTKLITAANFCENGKFAVVGSYDGRC-IFYTTDQLKYHTQIHVRSTRGKNATGRK 119
+ + ++A +F +G V SYDG C I+ T T I +
Sbjct: 148 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI--------DDDNPP 199
Query: 120 ISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFS-HDGKYIVS 178
+S ++ P IL + D+ ++L+D Y G+ N I A+FS GK+IVS
Sbjct: 200 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 259
Query: 179 GSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELII-AQMEPD 237
GSE+ +YIW + + ++ H VV P +I A +E D
Sbjct: 260 GSEDNLVYIWNLQ------------TKEIVQKLQGHTDVVISTACHPTENIIASAALEND 307
Query: 238 KS 239
K+
Sbjct: 308 KT 309
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 69/322 (21%), Positives = 126/322 (39%), Gaps = 48/322 (14%)
Query: 63 VEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRK--I 120
+ G TK +++ F NG++ S D + K+ I +G K I
Sbjct: 24 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI----------SGHKLGI 73
Query: 121 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS 180
S + + ++ S+D ++++D+ KG+ N +F+ IVSGS
Sbjct: 74 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSNLIVSGS 131
Query: 181 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQ------- 233
++ + IW D ++ + AH+ V+ F LI++
Sbjct: 132 FDESVRIW----DVKTGKCLKT--------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 179
Query: 234 -MEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV 292
+ + +++ +S ++ P IL + D+ ++L+D Y G+
Sbjct: 180 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 239
Query: 293 NVSSQIKASFS-HDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVV 351
N I A+FS GK+IVSGSE+ +YIW + + ++ H VV
Sbjct: 240 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ------------TKEIVQKLQGHTDVV 287
Query: 352 TCAVFAPCPELII-AQMEPDKS 372
P +I A +E DK+
Sbjct: 288 ISTACHPTENIIASAALENDKT 309
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Query: 1 MDKTVRLWHISRKECLCCF---QHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKV 57
+D T++LW S+ +CL + ++ + F ++ +SGS D + +WN+ K++
Sbjct: 217 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 276
Query: 58 AVWNEVEGQTKLI--TAANFCEN 78
+++G T ++ TA + EN
Sbjct: 277 V--QKLQGHTDVVISTACHPTEN 297
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 109/242 (45%), Gaps = 27/242 (11%)
Query: 2 DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
DKT+++W +S +CL + H ++V F+P+ + +SGS D +R+W++ K
Sbjct: 103 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCL-- 159
Query: 61 NEVEGQTKLITAANFCENGKFAVVGSYDGRC-IFYTTDQLKYHTQIHVRSTRGKNATGRK 119
+ + ++A +F +G V SYDG C I+ T T I +
Sbjct: 160 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI--------DDDNPP 211
Query: 120 ISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFS-HDGKYIVS 178
+S ++ P IL + D+ ++L+D Y G+ N I A+FS GK+IVS
Sbjct: 212 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 271
Query: 179 GSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELII-AQMEPD 237
GSE+ +YIW + + ++ H VV P +I A +E D
Sbjct: 272 GSEDNLVYIWNLQ------------TKEIVQKLQGHTDVVISTACHPTENIIASAALEND 319
Query: 238 KS 239
K+
Sbjct: 320 KT 321
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 69/322 (21%), Positives = 126/322 (39%), Gaps = 48/322 (14%)
Query: 63 VEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRK--I 120
+ G TK +++ F NG++ S D + K+ I +G K I
Sbjct: 36 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI----------SGHKLGI 85
Query: 121 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS 180
S + + ++ S+D ++++D+ KG+ N +F+ IVSGS
Sbjct: 86 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSNLIVSGS 143
Query: 181 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQ------- 233
++ + IW D ++ + AH+ V+ F LI++
Sbjct: 144 FDESVRIW----DVKTGKCLKT--------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 191
Query: 234 -MEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV 292
+ + +++ +S ++ P IL + D+ ++L+D Y G+
Sbjct: 192 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 251
Query: 293 NVSSQIKASFS-HDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVV 351
N I A+FS GK+IVSGSE+ +YIW + + ++ H VV
Sbjct: 252 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ------------TKEIVQKLQGHTDVV 299
Query: 352 TCAVFAPCPELII-AQMEPDKS 372
P +I A +E DK+
Sbjct: 300 ISTACHPTENIIASAALENDKT 321
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Query: 1 MDKTVRLWHISRKECLCCF---QHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKV 57
+D T++LW S+ +CL + ++ + F ++ +SGS D + +WN+ K++
Sbjct: 229 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 288
Query: 58 AVWNEVEGQTKLI--TAANFCEN 78
+++G T ++ TA + EN
Sbjct: 289 V--QKLQGHTDVVISTACHPTEN 309
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 109/242 (45%), Gaps = 27/242 (11%)
Query: 2 DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
DKT+++W +S +CL + H ++V F+P+ + +SGS D +R+W++ K
Sbjct: 92 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCL-- 148
Query: 61 NEVEGQTKLITAANFCENGKFAVVGSYDGRC-IFYTTDQLKYHTQIHVRSTRGKNATGRK 119
+ + ++A +F +G V SYDG C I+ T T I +
Sbjct: 149 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI--------DDDNPP 200
Query: 120 ISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFS-HDGKYIVS 178
+S ++ P IL + D+ ++L+D Y G+ N I A+FS GK+IVS
Sbjct: 201 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 260
Query: 179 GSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELII-AQMEPD 237
GSE+ +YIW + + ++ H VV P +I A +E D
Sbjct: 261 GSEDNLVYIWNLQ------------TKEIVQKLQGHTDVVISTACHPTENIIASAALEND 308
Query: 238 KS 239
K+
Sbjct: 309 KT 310
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 69/322 (21%), Positives = 126/322 (39%), Gaps = 48/322 (14%)
Query: 63 VEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRK--I 120
+ G TK +++ F NG++ S D + K+ I +G K I
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI----------SGHKLGI 74
Query: 121 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS 180
S + + ++ S+D ++++D+ KG+ N +F+ IVSGS
Sbjct: 75 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSNLIVSGS 132
Query: 181 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQ------- 233
++ + IW D ++ + AH+ V+ F LI++
Sbjct: 133 FDESVRIW----DVKTGKCLKT--------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 180
Query: 234 -MEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV 292
+ + +++ +S ++ P IL + D+ ++L+D Y G+
Sbjct: 181 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 240
Query: 293 NVSSQIKASFS-HDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVV 351
N I A+FS GK+IVSGSE+ +YIW + + ++ H VV
Sbjct: 241 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ------------TKEIVQKLQGHTDVV 288
Query: 352 TCAVFAPCPELII-AQMEPDKS 372
P +I A +E DK+
Sbjct: 289 ISTACHPTENIIASAALENDKT 310
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Query: 1 MDKTVRLWHISRKECLCCF---QHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKV 57
+D T++LW S+ +CL + ++ + F ++ +SGS D + +WN+ K++
Sbjct: 218 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 277
Query: 58 AVWNEVEGQTKLI--TAANFCEN 78
+++G T ++ TA + EN
Sbjct: 278 V--QKLQGHTDVVISTACHPTEN 298
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 109/242 (45%), Gaps = 27/242 (11%)
Query: 2 DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
DKT+++W +S +CL + H ++V F+P+ + +SGS D +R+W++ K
Sbjct: 110 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCL-- 166
Query: 61 NEVEGQTKLITAANFCENGKFAVVGSYDGRC-IFYTTDQLKYHTQIHVRSTRGKNATGRK 119
+ + ++A +F +G V SYDG C I+ T T I +
Sbjct: 167 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI--------DDDNPP 218
Query: 120 ISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFS-HDGKYIVS 178
+S ++ P IL + D+ ++L+D Y G+ N I A+FS GK+IVS
Sbjct: 219 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 278
Query: 179 GSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELII-AQMEPD 237
GSE+ +YIW + + ++ H VV P +I A +E D
Sbjct: 279 GSEDNLVYIWNLQ------------TKEIVQKLQGHTDVVISTACHPTENIIASAALEND 326
Query: 238 KS 239
K+
Sbjct: 327 KT 328
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 69/322 (21%), Positives = 126/322 (39%), Gaps = 48/322 (14%)
Query: 63 VEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRK--I 120
+ G TK +++ F NG++ S D + K+ I +G K I
Sbjct: 43 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI----------SGHKLGI 92
Query: 121 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS 180
S + + ++ S+D ++++D+ KG+ N +F+ IVSGS
Sbjct: 93 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSNLIVSGS 150
Query: 181 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQ------- 233
++ + IW D ++ + AH+ V+ F LI++
Sbjct: 151 FDESVRIW----DVKTGKCLKT--------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 198
Query: 234 -MEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV 292
+ + +++ +S ++ P IL + D+ ++L+D Y G+
Sbjct: 199 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 258
Query: 293 NVSSQIKASFS-HDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVV 351
N I A+FS GK+IVSGSE+ +YIW + + ++ H VV
Sbjct: 259 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ------------TKEIVQKLQGHTDVV 306
Query: 352 TCAVFAPCPELII-AQMEPDKS 372
P +I A +E DK+
Sbjct: 307 ISTACHPTENIIASAALENDKT 328
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Query: 1 MDKTVRLWHISRKECLCCF---QHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKV 57
+D T++LW S+ +CL + ++ + F ++ +SGS D + +WN+ K++
Sbjct: 236 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 295
Query: 58 AVWNEVEGQTKLI--TAANFCEN 78
+++G T ++ TA + EN
Sbjct: 296 V--QKLQGHTDVVISTACHPTEN 316
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 109/242 (45%), Gaps = 27/242 (11%)
Query: 2 DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
DKT+++W +S +CL + H ++V F+P+ + +SGS D +R+W++ K
Sbjct: 87 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCL-- 143
Query: 61 NEVEGQTKLITAANFCENGKFAVVGSYDGRC-IFYTTDQLKYHTQIHVRSTRGKNATGRK 119
+ + ++A +F +G V SYDG C I+ T T I +
Sbjct: 144 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI--------DDDNPP 195
Query: 120 ISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFS-HDGKYIVS 178
+S ++ P IL + D+ ++L+D Y G+ N I A+FS GK+IVS
Sbjct: 196 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 255
Query: 179 GSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELII-AQMEPD 237
GSE+ +YIW + + ++ H VV P +I A +E D
Sbjct: 256 GSEDNLVYIWNLQ------------TKEIVQKLQGHTDVVISTACHPTENIIASAALEND 303
Query: 238 KS 239
K+
Sbjct: 304 KT 305
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 69/322 (21%), Positives = 126/322 (39%), Gaps = 48/322 (14%)
Query: 63 VEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRK--I 120
+ G TK +++ F NG++ S D + K+ I +G K I
Sbjct: 20 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI----------SGHKLGI 69
Query: 121 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS 180
S + + ++ S+D ++++D+ KG+ N +F+ IVSGS
Sbjct: 70 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSNLIVSGS 127
Query: 181 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQ------- 233
++ + IW D ++ + AH+ V+ F LI++
Sbjct: 128 FDESVRIW----DVKTGKCLKT--------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 175
Query: 234 -MEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV 292
+ + +++ +S ++ P IL + D+ ++L+D Y G+
Sbjct: 176 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 235
Query: 293 NVSSQIKASFS-HDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVV 351
N I A+FS GK+IVSGSE+ +YIW + + ++ H VV
Sbjct: 236 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ------------TKEIVQKLQGHTDVV 283
Query: 352 TCAVFAPCPELII-AQMEPDKS 372
P +I A +E DK+
Sbjct: 284 ISTACHPTENIIASAALENDKT 305
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Query: 1 MDKTVRLWHISRKECLCCF---QHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKV 57
+D T++LW S+ +CL + ++ + F ++ +SGS D + +WN+ K++
Sbjct: 213 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 272
Query: 58 AVWNEVEGQTKLI--TAANFCEN 78
+++G T ++ TA + EN
Sbjct: 273 V--QKLQGHTDVVISTACHPTEN 293
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 109/242 (45%), Gaps = 27/242 (11%)
Query: 2 DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
DKT+++W +S +CL + H ++V F+P+ + +SGS D +R+W++ K
Sbjct: 108 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCL-- 164
Query: 61 NEVEGQTKLITAANFCENGKFAVVGSYDGRC-IFYTTDQLKYHTQIHVRSTRGKNATGRK 119
+ + ++A +F +G V SYDG C I+ T T I +
Sbjct: 165 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI--------DDDNPP 216
Query: 120 ISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFS-HDGKYIVS 178
+S ++ P IL + D+ ++L+D Y G+ N I A+FS GK+IVS
Sbjct: 217 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 276
Query: 179 GSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELII-AQMEPD 237
GSE+ +YIW + + ++ H VV P +I A +E D
Sbjct: 277 GSEDNLVYIWNLQ------------TKEIVQKLQGHTDVVISTACHPTENIIASAALEND 324
Query: 238 KS 239
K+
Sbjct: 325 KT 326
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 69/322 (21%), Positives = 126/322 (39%), Gaps = 48/322 (14%)
Query: 63 VEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRK--I 120
+ G TK +++ F NG++ S D + K+ I +G K I
Sbjct: 41 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI----------SGHKLGI 90
Query: 121 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS 180
S + + ++ S+D ++++D+ KG+ N +F+ IVSGS
Sbjct: 91 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSNLIVSGS 148
Query: 181 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQ------- 233
++ + IW D ++ + AH+ V+ F LI++
Sbjct: 149 FDESVRIW----DVKTGKCLKT--------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 196
Query: 234 -MEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV 292
+ + +++ +S ++ P IL + D+ ++L+D Y G+
Sbjct: 197 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 256
Query: 293 NVSSQIKASFS-HDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVV 351
N I A+FS GK+IVSGSE+ +YIW + + ++ H VV
Sbjct: 257 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ------------TKEIVQKLQGHTDVV 304
Query: 352 TCAVFAPCPELII-AQMEPDKS 372
P +I A +E DK+
Sbjct: 305 ISTACHPTENIIASAALENDKT 326
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Query: 1 MDKTVRLWHISRKECLCCF---QHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKV 57
+D T++LW S+ +CL + ++ + F ++ +SGS D + +WN+ K++
Sbjct: 234 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 293
Query: 58 AVWNEVEGQTKLI--TAANFCEN 78
+++G T ++ TA + EN
Sbjct: 294 V--QKLQGHTDVVISTACHPTEN 314
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 109/242 (45%), Gaps = 27/242 (11%)
Query: 2 DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
DKT+++W +S +CL + H ++V F+P+ + +SGS D +R+W++ K
Sbjct: 92 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCL-- 148
Query: 61 NEVEGQTKLITAANFCENGKFAVVGSYDGRC-IFYTTDQLKYHTQIHVRSTRGKNATGRK 119
+ + ++A +F +G V SYDG C I+ T T I +
Sbjct: 149 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI--------DDDNPP 200
Query: 120 ISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFS-HDGKYIVS 178
+S ++ P IL + D+ ++L+D Y G+ N I A+FS GK+IVS
Sbjct: 201 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 260
Query: 179 GSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELII-AQMEPD 237
GSE+ +YIW + + ++ H VV P +I A +E D
Sbjct: 261 GSEDNLVYIWNLQ------------TKEIVQKLQGHTDVVISTACHPTENIIASAALEND 308
Query: 238 KS 239
K+
Sbjct: 309 KT 310
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 69/322 (21%), Positives = 126/322 (39%), Gaps = 48/322 (14%)
Query: 63 VEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRK--I 120
+ G TK +++ F NG++ S D + K+ I +G K I
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI----------SGHKLGI 74
Query: 121 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS 180
S + + ++ S+D ++++D+ KG+ N +F+ IVSGS
Sbjct: 75 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSNLIVSGS 132
Query: 181 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQ------- 233
++ + IW D ++ + AH+ V+ F LI++
Sbjct: 133 FDESVRIW----DVKTGKCLKT--------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 180
Query: 234 -MEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV 292
+ + +++ +S ++ P IL + D+ ++L+D Y G+
Sbjct: 181 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 240
Query: 293 NVSSQIKASFS-HDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVV 351
N I A+FS GK+IVSGSE+ +YIW + + ++ H VV
Sbjct: 241 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ------------TKEIVQKLQGHTDVV 288
Query: 352 TCAVFAPCPELII-AQMEPDKS 372
P +I A +E DK+
Sbjct: 289 ISTACHPTENIIASAALENDKT 310
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Query: 1 MDKTVRLWHISRKECLCCF---QHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKV 57
+D T++LW S+ +CL + ++ + F ++ +SGS D + +WN+ K++
Sbjct: 218 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 277
Query: 58 AVWNEVEGQTKLI--TAANFCEN 78
+++G T ++ TA + EN
Sbjct: 278 V--QKLQGHTDVVISTACHPTEN 298
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 109/242 (45%), Gaps = 27/242 (11%)
Query: 2 DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
DKT+++W +S +CL + H ++V F+P+ + +SGS D +R+W++ K
Sbjct: 86 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCL-- 142
Query: 61 NEVEGQTKLITAANFCENGKFAVVGSYDGRC-IFYTTDQLKYHTQIHVRSTRGKNATGRK 119
+ + ++A +F +G V SYDG C I+ T T I +
Sbjct: 143 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI--------DDDNPP 194
Query: 120 ISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFS-HDGKYIVS 178
+S ++ P IL + D+ ++L+D Y G+ N I A+FS GK+IVS
Sbjct: 195 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 254
Query: 179 GSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELII-AQMEPD 237
GSE+ +YIW + + ++ H VV P +I A +E D
Sbjct: 255 GSEDNLVYIWNLQ------------TKEIVQKLQGHTDVVISTACHPTENIIASAALEND 302
Query: 238 KS 239
K+
Sbjct: 303 KT 304
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 69/322 (21%), Positives = 126/322 (39%), Gaps = 48/322 (14%)
Query: 63 VEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRK--I 120
+ G TK +++ F NG++ S D + K+ I +G K I
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI----------SGHKLGI 68
Query: 121 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS 180
S + + ++ S+D ++++D+ KG+ N +F+ IVSGS
Sbjct: 69 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSNLIVSGS 126
Query: 181 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQ------- 233
++ + IW D ++ + AH+ V+ F LI++
Sbjct: 127 FDESVRIW----DVKTGKCLKT--------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 174
Query: 234 -MEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV 292
+ + +++ +S ++ P IL + D+ ++L+D Y G+
Sbjct: 175 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 234
Query: 293 NVSSQIKASFS-HDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVV 351
N I A+FS GK+IVSGSE+ +YIW + + ++ H VV
Sbjct: 235 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ------------TKEIVQKLQGHTDVV 282
Query: 352 TCAVFAPCPELII-AQMEPDKS 372
P +I A +E DK+
Sbjct: 283 ISTACHPTENIIASAALENDKT 304
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Query: 1 MDKTVRLWHISRKECLCCF---QHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKV 57
+D T++LW S+ +CL + ++ + F ++ +SGS D + +WN+ K++
Sbjct: 212 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 271
Query: 58 AVWNEVEGQTKLI--TAANFCEN 78
+++G T ++ TA + EN
Sbjct: 272 V--QKLQGHTDVVISTACHPTEN 292
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 109/242 (45%), Gaps = 27/242 (11%)
Query: 2 DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
DKT+++W +S +CL + H ++V F+P+ + +SGS D +R+W++ K
Sbjct: 86 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCL-- 142
Query: 61 NEVEGQTKLITAANFCENGKFAVVGSYDGRC-IFYTTDQLKYHTQIHVRSTRGKNATGRK 119
+ + ++A +F +G V SYDG C I+ T T I +
Sbjct: 143 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI--------DDDNPP 194
Query: 120 ISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFS-HDGKYIVS 178
+S ++ P IL + D+ ++L+D Y G+ N I A+FS GK+IVS
Sbjct: 195 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 254
Query: 179 GSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELII-AQMEPD 237
GSE+ +YIW + + ++ H VV P +I A +E D
Sbjct: 255 GSEDNLVYIWNLQ------------TKEIVQKLQGHTDVVISTACHPTENIIASAALEND 302
Query: 238 KS 239
K+
Sbjct: 303 KT 304
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 69/322 (21%), Positives = 126/322 (39%), Gaps = 48/322 (14%)
Query: 63 VEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRK--I 120
+ G TK +++ F NG++ S D + K+ I +G K I
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI----------SGHKLGI 68
Query: 121 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS 180
S + + ++ S+D ++++D+ KG+ N +F+ IVSGS
Sbjct: 69 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSNLIVSGS 126
Query: 181 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQ------- 233
++ + IW D ++ + AH+ V+ F LI++
Sbjct: 127 FDESVRIW----DVKTGKCLKT--------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 174
Query: 234 -MEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV 292
+ + +++ +S ++ P IL + D+ ++L+D Y G+
Sbjct: 175 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 234
Query: 293 NVSSQIKASFS-HDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVV 351
N I A+FS GK+IVSGSE+ +YIW + + ++ H VV
Sbjct: 235 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ------------TKEIVQKLQGHTDVV 282
Query: 352 TCAVFAPCPELII-AQMEPDKS 372
P +I A +E DK+
Sbjct: 283 ISTACHPTENIIASAALENDKT 304
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Query: 1 MDKTVRLWHISRKECLCCF---QHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKV 57
+D T++LW S+ +CL + ++ + F ++ +SGS D + +WN+ K++
Sbjct: 212 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 271
Query: 58 AVWNEVEGQTKLI--TAANFCEN 78
+++G T ++ TA + EN
Sbjct: 272 V--QKLQGHTDVVISTACHPTEN 292
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 109/242 (45%), Gaps = 27/242 (11%)
Query: 2 DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
DKT+++W +S +CL + H ++V F+P+ + +SGS D +R+W++ K
Sbjct: 82 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCL-- 138
Query: 61 NEVEGQTKLITAANFCENGKFAVVGSYDGRC-IFYTTDQLKYHTQIHVRSTRGKNATGRK 119
+ + ++A +F +G V SYDG C I+ T T I +
Sbjct: 139 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI--------DDDNPP 190
Query: 120 ISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFS-HDGKYIVS 178
+S ++ P IL + D+ ++L+D Y G+ N I A+FS GK+IVS
Sbjct: 191 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 250
Query: 179 GSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELII-AQMEPD 237
GSE+ +YIW + + ++ H VV P +I A +E D
Sbjct: 251 GSEDNLVYIWNLQ------------TKEIVQKLQGHTDVVISTACHPTENIIASAALEND 298
Query: 238 KS 239
K+
Sbjct: 299 KT 300
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 69/322 (21%), Positives = 126/322 (39%), Gaps = 48/322 (14%)
Query: 63 VEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRK--I 120
+ G TK +++ F NG++ S D + K+ I +G K I
Sbjct: 15 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI----------SGHKLGI 64
Query: 121 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS 180
S + + ++ S+D ++++D+ KG+ N +F+ IVSGS
Sbjct: 65 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSNLIVSGS 122
Query: 181 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQ------- 233
++ + IW D ++ + AH+ V+ F LI++
Sbjct: 123 FDESVRIW----DVKTGKCLKT--------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 170
Query: 234 -MEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV 292
+ + +++ +S ++ P IL + D+ ++L+D Y G+
Sbjct: 171 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 230
Query: 293 NVSSQIKASFS-HDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVV 351
N I A+FS GK+IVSGSE+ +YIW + + ++ H VV
Sbjct: 231 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ------------TKEIVQKLQGHTDVV 278
Query: 352 TCAVFAPCPELII-AQMEPDKS 372
P +I A +E DK+
Sbjct: 279 ISTACHPTENIIASAALENDKT 300
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Query: 1 MDKTVRLWHISRKECLCCF---QHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKV 57
+D T++LW S+ +CL + ++ + F ++ +SGS D + +WN+ K++
Sbjct: 208 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 267
Query: 58 AVWNEVEGQTKLI--TAANFCEN 78
+++G T ++ TA + EN
Sbjct: 268 V--QKLQGHTDVVISTACHPTEN 288
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 109/242 (45%), Gaps = 27/242 (11%)
Query: 2 DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
DKT+++W +S +CL + H ++V F+P+ + +SGS D +R+W++ K
Sbjct: 89 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCL-- 145
Query: 61 NEVEGQTKLITAANFCENGKFAVVGSYDGRC-IFYTTDQLKYHTQIHVRSTRGKNATGRK 119
+ + ++A +F +G V SYDG C I+ T T I +
Sbjct: 146 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI--------DDDNPP 197
Query: 120 ISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFS-HDGKYIVS 178
+S ++ P IL + D+ ++L+D Y G+ N I A+FS GK+IVS
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 257
Query: 179 GSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELII-AQMEPD 237
GSE+ +YIW + + ++ H VV P +I A +E D
Sbjct: 258 GSEDNLVYIWNLQ------------TKEIVQKLQGHTDVVISTACHPTENIIASAALEND 305
Query: 238 KS 239
K+
Sbjct: 306 KT 307
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 69/322 (21%), Positives = 126/322 (39%), Gaps = 48/322 (14%)
Query: 63 VEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRK--I 120
+ G TK +++ F NG++ S D + K+ I +G K I
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI----------SGHKLGI 71
Query: 121 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS 180
S + + ++ S+D ++++D+ KG+ N +F+ IVSGS
Sbjct: 72 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSNLIVSGS 129
Query: 181 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQ------- 233
++ + IW D ++ + AH+ V+ F LI++
Sbjct: 130 FDESVRIW----DVKTGKCLKT--------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 177
Query: 234 -MEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV 292
+ + +++ +S ++ P IL + D+ ++L+D Y G+
Sbjct: 178 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 237
Query: 293 NVSSQIKASFS-HDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVV 351
N I A+FS GK+IVSGSE+ +YIW + + ++ H VV
Sbjct: 238 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ------------TKEIVQKLQGHTDVV 285
Query: 352 TCAVFAPCPELII-AQMEPDKS 372
P +I A +E DK+
Sbjct: 286 ISTACHPTENIIASAALENDKT 307
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Query: 1 MDKTVRLWHISRKECLCCF---QHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKV 57
+D T++LW S+ +CL + ++ + F ++ +SGS D + +WN+ K++
Sbjct: 215 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 274
Query: 58 AVWNEVEGQTKLI--TAANFCEN 78
+++G T ++ TA + EN
Sbjct: 275 V--QKLQGHTDVVISTACHPTEN 295
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 109/242 (45%), Gaps = 27/242 (11%)
Query: 2 DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
DKT+++W +S +CL + H ++V F+P+ + +SGS D +R+W++ K
Sbjct: 89 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCL-- 145
Query: 61 NEVEGQTKLITAANFCENGKFAVVGSYDGRC-IFYTTDQLKYHTQIHVRSTRGKNATGRK 119
+ + ++A +F +G V SYDG C I+ T T I +
Sbjct: 146 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI--------DDDNPP 197
Query: 120 ISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFS-HDGKYIVS 178
+S ++ P IL + D+ ++L+D Y G+ N I A+FS GK+IVS
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 257
Query: 179 GSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELII-AQMEPD 237
GSE+ +YIW + + ++ H VV P +I A +E D
Sbjct: 258 GSEDNLVYIWNLQ------------TKEIVQKLQGHTDVVISTACHPTENIIASAALEND 305
Query: 238 KS 239
K+
Sbjct: 306 KT 307
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 69/322 (21%), Positives = 126/322 (39%), Gaps = 48/322 (14%)
Query: 63 VEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRK--I 120
+ G TK +++ F NG++ S D + K+ I +G K I
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI----------SGHKLGI 71
Query: 121 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS 180
S + + ++ S+D ++++D+ KG+ N +F+ IVSGS
Sbjct: 72 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSNLIVSGS 129
Query: 181 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQ------- 233
++ + IW D ++ + AH+ V+ F LI++
Sbjct: 130 FDESVRIW----DVKTGKCLKT--------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 177
Query: 234 -MEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV 292
+ + +++ +S ++ P IL + D+ ++L+D Y G+
Sbjct: 178 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 237
Query: 293 NVSSQIKASFS-HDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVV 351
N I A+FS GK+IVSGSE+ +YIW + + ++ H VV
Sbjct: 238 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ------------TKEIVQKLQGHTDVV 285
Query: 352 TCAVFAPCPELII-AQMEPDKS 372
P +I A +E DK+
Sbjct: 286 ISTACHPTENIIASAALENDKT 307
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Query: 1 MDKTVRLWHISRKECLCCF---QHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKV 57
+D T++LW S+ +CL + ++ + F ++ +SGS D + +WN+ K++
Sbjct: 215 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 274
Query: 58 AVWNEVEGQTKLI--TAANFCEN 78
+++G T ++ TA + EN
Sbjct: 275 V--QKLQGHTDVVISTACHPTEN 295
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 109/242 (45%), Gaps = 27/242 (11%)
Query: 2 DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
DKT+++W +S +CL + H ++V F+P+ + +SGS D +R+W++ K
Sbjct: 85 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCL-- 141
Query: 61 NEVEGQTKLITAANFCENGKFAVVGSYDGRC-IFYTTDQLKYHTQIHVRSTRGKNATGRK 119
+ + ++A +F +G V SYDG C I+ T T I +
Sbjct: 142 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI--------DDDNPP 193
Query: 120 ISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFS-HDGKYIVS 178
+S ++ P IL + D+ ++L+D Y G+ N I A+FS GK+IVS
Sbjct: 194 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 253
Query: 179 GSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELII-AQMEPD 237
GSE+ +YIW + + ++ H VV P +I A +E D
Sbjct: 254 GSEDNLVYIWNLQ------------TKEIVQKLQGHTDVVISTACHPTENIIASAALEND 301
Query: 238 KS 239
K+
Sbjct: 302 KT 303
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 69/322 (21%), Positives = 126/322 (39%), Gaps = 48/322 (14%)
Query: 63 VEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRK--I 120
+ G TK +++ F NG++ S D + K+ I +G K I
Sbjct: 18 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI----------SGHKLGI 67
Query: 121 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS 180
S + + ++ S+D ++++D+ KG+ N +F+ IVSGS
Sbjct: 68 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSNLIVSGS 125
Query: 181 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQ------- 233
++ + IW D ++ + AH+ V+ F LI++
Sbjct: 126 FDESVRIW----DVKTGKCLKT--------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 173
Query: 234 -MEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV 292
+ + +++ +S ++ P IL + D+ ++L+D Y G+
Sbjct: 174 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 233
Query: 293 NVSSQIKASFS-HDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVV 351
N I A+FS GK+IVSGSE+ +YIW + + ++ H VV
Sbjct: 234 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ------------TKEIVQKLQGHTDVV 281
Query: 352 TCAVFAPCPELII-AQMEPDKS 372
P +I A +E DK+
Sbjct: 282 ISTACHPTENIIASAALENDKT 303
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Query: 1 MDKTVRLWHISRKECLCCF---QHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKV 57
+D T++LW S+ +CL + ++ + F ++ +SGS D + +WN+ K++
Sbjct: 211 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 270
Query: 58 AVWNEVEGQTKLI--TAANFCEN 78
+++G T ++ TA + EN
Sbjct: 271 V--QKLQGHTDVVISTACHPTEN 291
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 109/242 (45%), Gaps = 27/242 (11%)
Query: 2 DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
DKT+++W +S +CL + H ++V F+P+ + +SGS D +R+W++ K
Sbjct: 92 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCL-- 148
Query: 61 NEVEGQTKLITAANFCENGKFAVVGSYDGRC-IFYTTDQLKYHTQIHVRSTRGKNATGRK 119
+ + ++A +F +G V SYDG C I+ T T I +
Sbjct: 149 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI--------DDDNPP 200
Query: 120 ISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFS-HDGKYIVS 178
+S ++ P IL + D+ ++L+D Y G+ N I A+FS GK+IVS
Sbjct: 201 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 260
Query: 179 GSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELII-AQMEPD 237
GSE+ +YIW + + ++ H VV P +I A +E D
Sbjct: 261 GSEDNLVYIWNLQ------------TKEIVQKLQGHTDVVISTACHPTENIIASAALEND 308
Query: 238 KS 239
K+
Sbjct: 309 KT 310
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 69/322 (21%), Positives = 126/322 (39%), Gaps = 48/322 (14%)
Query: 63 VEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRK--I 120
+ G TK +++ F NG++ S D + K+ I +G K I
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI----------SGHKLGI 74
Query: 121 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS 180
S + + ++ S+D ++++D+ KG+ N +F+ IVSGS
Sbjct: 75 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSNLIVSGS 132
Query: 181 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQ------- 233
++ + IW D ++ + AH+ V+ F LI++
Sbjct: 133 FDESVRIW----DVKTGKCLKT--------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 180
Query: 234 -MEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV 292
+ + +++ +S ++ P IL + D+ ++L+D Y G+
Sbjct: 181 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 240
Query: 293 NVSSQIKASFS-HDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVV 351
N I A+FS GK+IVSGSE+ +YIW + + ++ H VV
Sbjct: 241 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ------------TKEIVQKLQGHTDVV 288
Query: 352 TCAVFAPCPELII-AQMEPDKS 372
P +I A +E DK+
Sbjct: 289 ISTACHPTENIIASAALENDKT 310
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Query: 1 MDKTVRLWHISRKECLCCF---QHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKV 57
+D T++LW S+ +CL + ++ + F ++ +SGS D + +WN+ K++
Sbjct: 218 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 277
Query: 58 AVWNEVEGQTKLI--TAANFCEN 78
+++G T ++ TA + EN
Sbjct: 278 V--QKLQGHTDVVISTACHPTEN 298
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 109/242 (45%), Gaps = 27/242 (11%)
Query: 2 DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
DKT+++W +S +CL + H ++V F+P+ + +SGS D +R+W++ K
Sbjct: 89 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCL-- 145
Query: 61 NEVEGQTKLITAANFCENGKFAVVGSYDGRC-IFYTTDQLKYHTQIHVRSTRGKNATGRK 119
+ + ++A +F +G V SYDG C I+ T T I +
Sbjct: 146 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI--------DDDNPP 197
Query: 120 ISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFS-HDGKYIVS 178
+S ++ P IL + D+ ++L+D Y G+ N I A+FS GK+IVS
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 257
Query: 179 GSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELII-AQMEPD 237
GSE+ +YIW + + ++ H VV P +I A +E D
Sbjct: 258 GSEDNLVYIWNLQ------------TKEIVQKLQGHTDVVISTACHPTENIIASAALEND 305
Query: 238 KS 239
K+
Sbjct: 306 KT 307
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 69/322 (21%), Positives = 126/322 (39%), Gaps = 48/322 (14%)
Query: 63 VEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRK--I 120
+ G TK +++ F NG++ S D + K+ I +G K I
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTI----------SGHKLGI 71
Query: 121 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS 180
S + + ++ S+D ++++D+ KG+ N +F+ IVSGS
Sbjct: 72 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSNLIVSGS 129
Query: 181 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQ------- 233
++ + IW D ++ + AH+ V+ F LI++
Sbjct: 130 FDESVRIW----DVKTGKCLKT--------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 177
Query: 234 -MEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV 292
+ + +++ +S ++ P IL + D+ ++L+D Y G+
Sbjct: 178 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 237
Query: 293 NVSSQIKASFS-HDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVV 351
N I A+FS GK+IVSGSE+ +YIW + + ++ H VV
Sbjct: 238 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ------------TKEIVQKLQGHTDVV 285
Query: 352 TCAVFAPCPELII-AQMEPDKS 372
P +I A +E DK+
Sbjct: 286 ISTACHPTENIIASAALENDKT 307
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Query: 1 MDKTVRLWHISRKECLCCF---QHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKV 57
+D T++LW S+ +CL + ++ + F ++ +SGS D + +WN+ K++
Sbjct: 215 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 274
Query: 58 AVWNEVEGQTKLI--TAANFCEN 78
+++G T ++ TA + EN
Sbjct: 275 V--QKLQGHTDVVISTACHPTEN 295
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 109/242 (45%), Gaps = 27/242 (11%)
Query: 2 DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
DKT+++W +S +CL + H ++V F+P+ + +SGS D +R+W++ K
Sbjct: 89 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDV--KTGMCL 145
Query: 61 NEVEGQTKLITAANFCENGKFAVVGSYDGRC-IFYTTDQLKYHTQIHVRSTRGKNATGRK 119
+ + ++A +F +G V SYDG C I+ T T I +
Sbjct: 146 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI--------DDDNPP 197
Query: 120 ISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFS-HDGKYIVS 178
+S ++ P IL + D+ ++L+D Y G+ N I A+FS GK+IVS
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 257
Query: 179 GSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELII-AQMEPD 237
GSE+ +YIW + + ++ H VV P +I A +E D
Sbjct: 258 GSEDNMVYIWNLQ------------TKEIVQKLQGHTDVVISTACHPTENIIASAALEND 305
Query: 238 KS 239
K+
Sbjct: 306 KT 307
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 68/322 (21%), Positives = 124/322 (38%), Gaps = 48/322 (14%)
Query: 63 VEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRK--I 120
+ G TK +++ F NG++ S D + K+ I +G K I
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI----------SGHKLGI 71
Query: 121 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS 180
S + + ++ S+D ++++D+ KG+ N +F+ IVSGS
Sbjct: 72 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSNLIVSGS 129
Query: 181 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQ------- 233
++ + IW + + AH+ V+ F LI++
Sbjct: 130 FDESVRIWDVKTGMCL------------KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 177
Query: 234 -MEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV 292
+ + +++ +S ++ P IL + D+ ++L+D Y G+
Sbjct: 178 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 237
Query: 293 NVSSQIKASFS-HDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVV 351
N I A+FS GK+IVSGSE+ +YIW + + ++ H VV
Sbjct: 238 NEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQ------------TKEIVQKLQGHTDVV 285
Query: 352 TCAVFAPCPELII-AQMEPDKS 372
P +I A +E DK+
Sbjct: 286 ISTACHPTENIIASAALENDKT 307
Score = 35.0 bits (79), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Query: 1 MDKTVRLWHISRKECLCCF---QHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKV 57
+D T++LW S+ +CL + ++ + F ++ +SGS D + +WN+ K++
Sbjct: 215 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEI 274
Query: 58 AVWNEVEGQTKLI--TAANFCEN 78
+++G T ++ TA + EN
Sbjct: 275 V--QKLQGHTDVVISTACHPTEN 295
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 109/242 (45%), Gaps = 27/242 (11%)
Query: 2 DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
DKT+++W +S +CL + H ++V F+P+ + +SGS D +R+W++ K
Sbjct: 89 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDV--KTGMCL 145
Query: 61 NEVEGQTKLITAANFCENGKFAVVGSYDGRC-IFYTTDQLKYHTQIHVRSTRGKNATGRK 119
+ + ++A +F +G V SYDG C I+ T T I +
Sbjct: 146 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI--------DDDNPP 197
Query: 120 ISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFS-HDGKYIVS 178
+S ++ P IL + D+ ++L+D Y G+ N I A+FS GK+IVS
Sbjct: 198 VSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 257
Query: 179 GSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELII-AQMEPD 237
GSE+ +YIW + + ++ H VV P +I A +E D
Sbjct: 258 GSEDNMVYIWNLQ------------TKEIVQKLQGHTDVVISTACHPTENIIASAALEND 305
Query: 238 KS 239
K+
Sbjct: 306 KT 307
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 68/322 (21%), Positives = 124/322 (38%), Gaps = 48/322 (14%)
Query: 63 VEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRK--I 120
+ G TK +++ F NG++ S D + K+ I +G K I
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI----------SGHKLGI 71
Query: 121 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS 180
S + + ++ S+D ++++D+ KG+ N +F+ IVSGS
Sbjct: 72 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSNLIVSGS 129
Query: 181 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQ------- 233
++ + IW + + AH+ V+ F LI++
Sbjct: 130 FDESVRIWDVKTGMCL------------KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 177
Query: 234 -MEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV 292
+ + +++ +S ++ P IL + D+ ++L+D Y G+
Sbjct: 178 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHK 237
Query: 293 NVSSQIKASFS-HDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVV 351
N I A+FS GK+IVSGSE+ +YIW + + ++ H VV
Sbjct: 238 NEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQ------------TKEIVQKLQGHTDVV 285
Query: 352 TCAVFAPCPELII-AQMEPDKS 372
P +I A +E DK+
Sbjct: 286 ISTACHPTENIIASAALENDKT 307
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 43/83 (51%), Gaps = 7/83 (8%)
Query: 1 MDKTVRLWHISRKECLCCF---QHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKV 57
+D ++LW S+ +CL + ++ + F ++ +SGS D + +WN+ K++
Sbjct: 215 LDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEI 274
Query: 58 AVWNEVEGQTKLI--TAANFCEN 78
+++G T ++ TA + EN
Sbjct: 275 V--QKLQGHTDVVISTACHPTEN 295
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 87/382 (22%), Positives = 165/382 (43%), Gaps = 62/382 (16%)
Query: 2 DKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWN 61
DKTV+LW+ + + H V + F P D + S S D ++LWN + +
Sbjct: 242 DKTVKLWNRNGQLLQTLTGHSSSVNGVAFRP-DGQTIASASDDKTVKLWN---RNGQLLQ 297
Query: 62 EVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKIS 121
+ G + + F +G+ + + D + + +L H+++ G +++ +
Sbjct: 298 TLTGHSSSVWGVAFSPDGQ-TIASASDDKTV-----KLWNRNGQHLQTLTGHSSS---VW 348
Query: 122 GIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKA-SFSHDGKYIVSGS 180
G+ P I S+D ++L++ R+ L G+ SS ++ +FS DG+ I S S
Sbjct: 349 GVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGH---SSSVRGVAFSPDGQTIASAS 404
Query: 181 ENQCIYIWKTHHDYAKFSSVRRDRN-DFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKS 239
+++ + +W +RN + + H++ V F+P + IA DK+
Sbjct: 405 DDKTVKLW--------------NRNGQLLQTLTGHSSSVWGVAFSPDDQ-TIASASDDKT 449
Query: 240 ----ESTGYVLNA-TGRKIS--GIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV 292
G +L TG S G+ P I S+D ++L++ R+ L G+
Sbjct: 450 VKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGH- 507
Query: 293 NVSSQIKA-SFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRN-DFWEGIKAHNAV 350
SS ++ +FS DG+ I S S+++ + +W +RN + + H++
Sbjct: 508 --SSSVRGVAFSPDGQTIASASDDKTVKLW--------------NRNGQLLQTLTGHSSS 551
Query: 351 VTCAVFAPCPELIIAQMEPDKS 372
V F+P + IA DK+
Sbjct: 552 VWGVAFSPDGQ-TIASASSDKT 572
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 86/380 (22%), Positives = 154/380 (40%), Gaps = 58/380 (15%)
Query: 2 DKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWN 61
DKTV+LW+ + + H V + F P D + S S D ++LWN + +
Sbjct: 37 DKTVKLWNRNGQLLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWN---RNGQLLQ 92
Query: 62 EVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTD-QLKYHTQIHVRSTRGKNATGRKI 120
+ G + + F +G+ S D + + QL H S +
Sbjct: 93 TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSS----------V 142
Query: 121 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS 180
G+ P I S+D ++L++ R+ L G+ SS +FS DG+ I S S
Sbjct: 143 WGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHS--SSVWGVAFSPDGQTIASAS 199
Query: 181 ENQCIYIWKTHHDYAKFSSVRRDRN-DFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKS 239
+++ + +W +RN + + H++ V F+P + IA DK+
Sbjct: 200 DDKTVKLW--------------NRNGQLLQTLTGHSSSVRGVAFSPDGQ-TIASASDDKT 244
Query: 240 ----ESTGYVLNA-TGR--KISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV 292
G +L TG ++G+ P I S+D ++L++ R+ L G+
Sbjct: 245 VKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN-RNGQLLQTLTGH- 302
Query: 293 NVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVT 352
SS +FS DG+ I S S+++ + +W + + + + H++ V
Sbjct: 303 -SSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQT-------------LTGHSSSVW 348
Query: 353 CAVFAPCPELIIAQMEPDKS 372
F+P + IA DK+
Sbjct: 349 GVAFSPDGQ-TIASASDDKT 367
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 88/382 (23%), Positives = 156/382 (40%), Gaps = 62/382 (16%)
Query: 2 DKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWN 61
DKTV+LW+ + + H V + F P D + S S D ++LWN + +
Sbjct: 201 DKTVKLWNRNGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWN---RNGQLLQ 256
Query: 62 EVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTD-QLKYHTQIHVRSTRGKNATGRKI 120
+ G + + F +G+ S D + + QL H S +
Sbjct: 257 TLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSS----------V 306
Query: 121 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS 180
G+ P I S+D ++L++ +L G+ SS +FS DG+ I S S
Sbjct: 307 WGVAFSPDGQTIASASDDKTVKLWNRNGQHLQT-LTGHS--SSVWGVAFSPDGQTIASAS 363
Query: 181 ENQCIYIWKTHHDYAKFSSVRRDRN-DFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKS 239
+++ + +W +RN + + H++ V F+P + IA DK+
Sbjct: 364 DDKTVKLW--------------NRNGQLLQTLTGHSSSVRGVAFSPDGQ-TIASASDDKT 408
Query: 240 ----ESTGYVLNA-TGRKIS--GIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV 292
G +L TG S G+ P + I S+D ++L++ R+ L G+
Sbjct: 409 VKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN-RNGQLLQTLTGH- 466
Query: 293 NVSSQIKA-SFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRN-DFWEGIKAHNAV 350
SS ++ +FS DG+ I S S+++ + +W +RN + + H++
Sbjct: 467 --SSSVRGVAFSPDGQTIASASDDKTVKLW--------------NRNGQLLQTLTGHSSS 510
Query: 351 VTCAVFAPCPELIIAQMEPDKS 372
V F+P + IA DK+
Sbjct: 511 VRGVAFSPDGQ-TIASASDDKT 531
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 79/329 (24%), Positives = 134/329 (40%), Gaps = 44/329 (13%)
Query: 2 DKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWN 61
DKTV+LW+ + + H V + F P D + S S D ++LWN + +
Sbjct: 283 DKTVKLWNRNGQLLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRNGQHLQT-- 339
Query: 62 EVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTD-QLKYHTQIHVRSTRGKNATGRKI 120
+ G + + F +G+ S D + + QL H S RG
Sbjct: 340 -LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRG-------- 390
Query: 121 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS 180
+ P I S+D ++L++ R+ L G+ SS +FS D + I S S
Sbjct: 391 --VAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHS--SSVWGVAFSPDDQTIASAS 445
Query: 181 ENQCIYIWKTHHDYAKFSSVRRDRN-DFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKS 239
+++ + +W +RN + + H++ V F+P + IA DK+
Sbjct: 446 DDKTVKLW--------------NRNGQLLQTLTGHSSSVRGVAFSPDGQ-TIASASDDKT 490
Query: 240 ----ESTGYVLNA-TGRKIS--GIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV 292
G +L TG S G+ P I S+D ++L++ R+ L G+
Sbjct: 491 VKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHS 549
Query: 293 NVSSQIKASFSHDGKYIVSGSENQCIYIW 321
SS +FS DG+ I S S ++ + +W
Sbjct: 550 --SSVWGVAFSPDGQTIASASSDKTVKLW 576
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 91/214 (42%), Gaps = 42/214 (19%)
Query: 168 SFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRN-DFWEGIKAHNAVVTCAVFAPC 226
+FS DG+ I S S+++ + +W +RN + + H++ V F+P
Sbjct: 23 AFSPDGQTIASASDDKTVKLW--------------NRNGQLLQTLTGHSSSVWGVAFSPD 68
Query: 227 PELIIAQMEPDKS----ESTGYVLNA-TGRKIS--GIEPMPGEDKILVTSNDSRIRLYDL 279
+ IA DK+ G +L TG S G+ P I S+D ++L++
Sbjct: 69 GQ-TIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN- 126
Query: 280 RDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRN- 338
R+ L G+ SS +FS DG+ I S S+++ + +W +RN
Sbjct: 127 RNGQLLQTLTGH--SSSVWGVAFSPDGQTIASASDDKTVKLW--------------NRNG 170
Query: 339 DFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKS 372
+ + H++ V F+P + IA DK+
Sbjct: 171 QLLQTLTGHSSSVWGVAFSPDGQ-TIASASDDKT 203
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 60/267 (22%), Positives = 115/267 (43%), Gaps = 38/267 (14%)
Query: 70 ITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGE 129
+ +F + + Y GR + Y TQ+ VRS + T + + + +
Sbjct: 16 VKGIDFHPTEPWVLTTLYSGRVELW-----NYETQVEVRSIQ---VTETPVRAGKFIARK 67
Query: 130 DKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGK-YIVSGSENQCIYIW 188
+ I+V S+D RIR+++ N K + I++ H K Y++SGS++ + +W
Sbjct: 68 NWIIVGSDDFRIRVFNY---NTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW 124
Query: 189 KTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKS-------ES 241
+++A + + H V C F P A D++ +S
Sbjct: 125 NWENNWA-----------LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS 173
Query: 242 TGYVLNATG--RKISGIE--PMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV-NVSS 296
T TG R ++ ++ P+P + ++ S+D I+++D + + +G++ NVS
Sbjct: 174 TPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSF 233
Query: 297 QIKASFSHDGKYIVSGSENQCIYIWKT 323
A F I+SGSE+ + IW +
Sbjct: 234 ---AVFHPTLPIIISGSEDGTLKIWNS 257
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 87/193 (45%), Gaps = 15/193 (7%)
Query: 2 DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
D +R+++ + E + F+ H D++ +I HP Y LSGS D ++LWN + A+
Sbjct: 76 DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNW-ENNWALE 133
Query: 61 NEVEGQTKLI--TAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGR 118
EG + A N + FA G D ++ Q + + RG N
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPSTFA-SGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDY 192
Query: 119 KISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV-NVSSQIKASFSHDGKYIV 177
P+P + ++ S+D I+++D + + +G++ NVS A F I+
Sbjct: 193 Y-----PLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSF---AVFHPTLPIII 244
Query: 178 SGSENQCIYIWKT 190
SGSE+ + IW +
Sbjct: 245 SGSEDGTLKIWNS 257
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 2 DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKV 57
D T+++W K C+ + H+ V+ FHP +SGS DG L++WN KV
Sbjct: 207 DLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSSTYKV 262
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 15/95 (15%)
Query: 265 ILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGK-YIVSGSENQCIYIWKT 323
I+V S+D RIR+++ N K + I++ H K Y++SGS++ + +W
Sbjct: 70 IIVGSDDFRIRVFNY---NTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126
Query: 324 HHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAP 358
+++A + + H V C F P
Sbjct: 127 ENNWA-----------LEQTFEGHEHFVMCVAFNP 150
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 60/267 (22%), Positives = 115/267 (43%), Gaps = 38/267 (14%)
Query: 70 ITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGE 129
+ +F + + Y GR + Y TQ+ VRS + T + + + +
Sbjct: 16 VKGIDFHPTEPWVLTTLYSGRVELW-----NYETQVEVRSIQ---VTETPVRAGKFIARK 67
Query: 130 DKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGK-YIVSGSENQCIYIW 188
+ I+V S+D RIR+++ N K + I++ H K Y++SGS++ + +W
Sbjct: 68 NWIIVGSDDFRIRVFNY---NTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW 124
Query: 189 KTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKS-------ES 241
+++A + + H V C F P A D++ +S
Sbjct: 125 NWENNWA-----------LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS 173
Query: 242 TGYVLNATG--RKISGIE--PMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV-NVSS 296
T TG R ++ ++ P+P + ++ S+D I+++D + + +G++ NVS
Sbjct: 174 TPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSF 233
Query: 297 QIKASFSHDGKYIVSGSENQCIYIWKT 323
A F I+SGSE+ + IW +
Sbjct: 234 ---AVFHPTLPIIISGSEDGTLKIWNS 257
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 87/193 (45%), Gaps = 15/193 (7%)
Query: 2 DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
D +R+++ + E + F+ H D++ +I HP Y LSGS D ++LWN + A+
Sbjct: 76 DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNW-ENNWALE 133
Query: 61 NEVEGQTKLI--TAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGR 118
EG + A N + FA G D ++ Q + + RG N
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPSTFA-SGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDY 192
Query: 119 KISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV-NVSSQIKASFSHDGKYIV 177
P+P + ++ S+D I+++D + + +G++ NVS A F I+
Sbjct: 193 Y-----PLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSF---AVFHPTLPIII 244
Query: 178 SGSENQCIYIWKT 190
SGSE+ + IW +
Sbjct: 245 SGSEDGTLKIWNS 257
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 2 DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKV 57
D T+++W K C+ + H+ V+ FHP +SGS DG L++WN KV
Sbjct: 207 DLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSSTYKV 262
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 15/95 (15%)
Query: 265 ILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGK-YIVSGSENQCIYIWKT 323
I+V S+D RIR+++ N K + I++ H K Y++SGS++ + +W
Sbjct: 70 IIVGSDDFRIRVFNY---NTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126
Query: 324 HHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAP 358
+++A + + H V C F P
Sbjct: 127 ENNWA-----------LEQTFEGHEHFVMCVAFNP 150
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/270 (21%), Positives = 112/270 (41%), Gaps = 44/270 (16%)
Query: 70 ITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGE 129
+ +F + + Y GR + Y TQ+ VRS + T + + + +
Sbjct: 16 VKGIDFHPTEPWVLTTLYSGRVELW-----NYETQVEVRSIQ---VTETPVRAGKFIARK 67
Query: 130 DKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGK-YIVSGSENQCIYIW 188
+ I+V S+D RIR+++ N K + I++ H K Y++SGS++ + +W
Sbjct: 68 NWIIVGSDDFRIRVFNY---NTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW 124
Query: 189 KTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAP---------CPELII-----AQM 234
+++A + + H V C F P C + + Q
Sbjct: 125 NWENNWA-----------LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS 173
Query: 235 EPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV-N 293
P+ + +TG G P+P + ++ S+D I+++D + + +G++ N
Sbjct: 174 TPNFTLTTG---QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSN 230
Query: 294 VSSQIKASFSHDGKYIVSGSENQCIYIWKT 323
VS A F I+SGSE+ + IW +
Sbjct: 231 VSF---AVFHPTLPIIISGSEDGTLKIWNS 257
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 87/193 (45%), Gaps = 15/193 (7%)
Query: 2 DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
D +R+++ + E + F+ H D++ +I HP Y LSGS D ++LWN + A+
Sbjct: 76 DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNW-ENNWALE 133
Query: 61 NEVEGQTKLI--TAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGR 118
EG + A N + FA G D ++ Q + + RG N
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPSTFA-SGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDY 192
Query: 119 KISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV-NVSSQIKASFSHDGKYIV 177
P+P + ++ S+D I+++D + + +G++ NVS A F I+
Sbjct: 193 Y-----PLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSF---AVFHPTLPIII 244
Query: 178 SGSENQCIYIWKT 190
SGSE+ + IW +
Sbjct: 245 SGSEDGTLKIWNS 257
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 2 DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKV 57
D T+++W K C+ + H+ V+ FHP +SGS DG L++WN KV
Sbjct: 207 DLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL-PIIISGSEDGTLKIWNSSTYKV 262
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 15/95 (15%)
Query: 265 ILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGK-YIVSGSENQCIYIWKT 323
I+V S+D RIR+++ N K + I++ H K Y++SGS++ + +W
Sbjct: 70 IIVGSDDFRIRVFNY---NTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126
Query: 324 HHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAP 358
+++A + + H V C F P
Sbjct: 127 ENNWA-----------LEQTFEGHEHFVMCVAFNP 150
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/250 (23%), Positives = 110/250 (44%), Gaps = 38/250 (15%)
Query: 87 YDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDL 146
Y GR + Y TQ+ VRS + T + + + ++ I+V S+D RIR+++
Sbjct: 33 YSGRVEIW-----NYETQVEVRSIQ---VTETPVRAGKFIARKNWIIVGSDDFRIRVFNY 84
Query: 147 RDLNLSCKYKGYVNVSSQIKASFSHDGK-YIVSGSENQCIYIWKTHHDYAKFSSVRRDRN 205
N K + I++ H K Y++SGS++ + +W +++A
Sbjct: 85 ---NTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA---------- 131
Query: 206 DFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKS-------ESTGYVLNATG--RKISGI 256
+ + H V C F P A D++ +ST TG R ++ +
Sbjct: 132 -LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYV 190
Query: 257 E--PMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV-NVSSQIKASFSHDGKYIVSGS 313
+ P+P + ++ S+D I+++D + + +G++ NVS A F I+SGS
Sbjct: 191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSF---AVFHPTLPIIISGS 247
Query: 314 ENQCIYIWKT 323
E+ + IW +
Sbjct: 248 EDGTLKIWNS 257
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 87/193 (45%), Gaps = 15/193 (7%)
Query: 2 DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
D +R+++ + E + F+ H D++ +I HP Y LSGS D ++LWN + A+
Sbjct: 76 DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNW-ENNWALE 133
Query: 61 NEVEGQTKLI--TAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGR 118
EG + A N + FA G D ++ Q + + RG N
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPSTFA-SGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDY 192
Query: 119 KISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV-NVSSQIKASFSHDGKYIV 177
P+P + ++ S+D I+++D + + +G++ NVS A F I+
Sbjct: 193 Y-----PLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSF---AVFHPTLPIII 244
Query: 178 SGSENQCIYIWKT 190
SGSE+ + IW +
Sbjct: 245 SGSEDGTLKIWNS 257
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 2 DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKV 57
D T+++W K C+ + H+ V+ FHP +SGS DG L++WN KV
Sbjct: 207 DLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL-PIIISGSEDGTLKIWNSSTYKV 262
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 15/95 (15%)
Query: 265 ILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGK-YIVSGSENQCIYIWKT 323
I+V S+D RIR+++ N K + I++ H K Y++SGS++ + +W
Sbjct: 70 IIVGSDDFRIRVFNY---NTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126
Query: 324 HHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAP 358
+++A + + H V C F P
Sbjct: 127 ENNWA-----------LEQTFEGHEHFVMCVAFNP 150
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 63/301 (20%), Positives = 116/301 (38%), Gaps = 42/301 (13%)
Query: 21 HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGK 80
H VT + FHP +S S D +++W+ ++G T + +F +GK
Sbjct: 107 HRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFE--RTLKGHTDSVQDISFDHSGK 163
Query: 81 FAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSR 140
S D T + +R+ G + +S + MP D I+ S D
Sbjct: 164 LLASCSAD-----MTIKLWDFQGFECIRTMHGHD---HNVSSVSIMPNGDHIVSASRDKT 215
Query: 141 IRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSV 200
I++++++ + G+ ++ + DG I S S +Q + +W K
Sbjct: 216 IKMWEVQTGYCVKTFTGHREWVRMVRPN--QDGTLIASCSNDQTVRVWVVATKECKAE-- 271
Query: 201 RRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMP 260
++ H VV C +AP SE+TG +G+ P P
Sbjct: 272 ----------LREHRHVVECISWAP------ESSYSSISEATGSETKKSGK------PGP 309
Query: 261 GEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYI 320
+L S D I+++D+ G+ N + F GK+I+S ++++ + +
Sbjct: 310 F---LLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGV--LFHSGGKFILSCADDKTLRV 364
Query: 321 W 321
W
Sbjct: 365 W 365
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/227 (18%), Positives = 78/227 (34%), Gaps = 63/227 (27%)
Query: 132 ILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTH 191
++ S D+ I+++D + KG+ + I SF H GK + S S + I +W
Sbjct: 123 MVSASEDATIKVWDYETGDFERTLKGHTDSVQDI--SFDHSGKLLASCSADMTIKLW--- 177
Query: 192 HDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGR 251
D+ F +R ++
Sbjct: 178 -DFQGFECIR-------------------------------------------TMHGHDH 193
Query: 252 KISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVS 311
+S + MP D I+ S D I++++++ + G+ ++ + DG I S
Sbjct: 194 NVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRP--NQDGTLIAS 251
Query: 312 GSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAP 358
S +Q + +W K ++ H VV C +AP
Sbjct: 252 CSNDQTVRVWVVATKECKAE------------LREHRHVVECISWAP 286
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 2 DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWN 51
DKT+R+W K C+ H FVT++ FH + Y ++GS+D +++W
Sbjct: 359 DKTLRVWDYKNKRCMKTLNAHEHFVTSLDFH-KTAPYVVTGSVDQTVKVWE 408
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 40/102 (39%), Gaps = 22/102 (21%)
Query: 2 DKTVRLWHISRKECLCCF-QHIDFVTAICFHP-------------------RDDRYFLSG 41
D+TVR+W ++ KEC +H V I + P + + LSG
Sbjct: 255 DQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSG 314
Query: 42 SLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAV 83
S D +++W++ + + G + F GKF +
Sbjct: 315 SRDKTIKMWDVSTGMCLM--TLVGHDNWVRGVLFHSGGKFIL 354
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 2 DKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPD----KKV 57
D+TVR+W + +C D VT + P D +Y +GSLD +R+W+ +++
Sbjct: 186 DRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERL 245
Query: 58 AVWNEV-EGQTKLITAANFCENGKFAVVGSYD 88
NE G + + F +G+ V GS D
Sbjct: 246 DSENESGTGHKDSVYSVVFTRDGQSVVSGSLD 277
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/175 (21%), Positives = 80/175 (45%), Gaps = 18/175 (10%)
Query: 24 FVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAV 83
++ ++CF P D ++ +G+ D +R+W+I ++K+ + ++G + I + ++ +G V
Sbjct: 125 YIRSVCFSP-DGKFLATGAEDRLIRIWDIENRKIVMI--LQGHEQDIYSLDYFPSGDKLV 181
Query: 84 VGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDK-ILVTSNDSRIR 142
GS D + + + + ++ + PG+ K I S D +R
Sbjct: 182 SGSGDRTVRIWDLRTGQCSLTLSIED---------GVTTVAVSPGDGKYIAAGSLDRAVR 232
Query: 143 LYD-----LRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHH 192
++D L + S G + S F+ DG+ +VSGS ++ + +W +
Sbjct: 233 VWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN 287
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/159 (20%), Positives = 58/159 (36%), Gaps = 49/159 (30%)
Query: 169 FSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPE 228
FS DGK++ +G+E++ I IW I+ V+
Sbjct: 131 FSPDGKFLATGAEDRLIRIWD---------------------IENRKIVM---------- 159
Query: 229 LIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKY 288
+L + I ++ P DK++ S D +R++DLR C
Sbjct: 160 ----------------ILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLR--TGQCSL 201
Query: 289 KGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDY 327
+ A DGKYI +GS ++ + +W + +
Sbjct: 202 TLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF 240
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 80/196 (40%), Gaps = 22/196 (11%)
Query: 2 DKTVRLWHISRKEC------LCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDK 55
DKT+ +W ++R E H FV+ + D ++ LSGS DG LRLW++
Sbjct: 37 DKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVIS-SDGQFALSGSWDGTLRLWDLTTG 95
Query: 56 KVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQL-KYHTQIHVRSTRGKN 114
G TK + + F + + V GS D + T + KY Q S
Sbjct: 96 TTT--RRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHS----- 148
Query: 115 ATGRKISGIEPMPGEDKILVTS--NDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHD 172
+S + P ++ S D +++++L + L + G+ + + + S D
Sbjct: 149 ---EWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTV--TVSPD 203
Query: 173 GKYIVSGSENQCIYIW 188
G SG ++ +W
Sbjct: 204 GSLCASGGKDGQAMLW 219
Score = 35.4 bits (80), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 64/161 (39%), Gaps = 26/161 (16%)
Query: 211 IKAHNAVVTCAVFAP-CPELIIAQ-------MEPDKSESTGY-----VLNATGRKISGIE 257
+K HN VT P P++I++ M + T Y L +S +
Sbjct: 11 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 70
Query: 258 PMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQC 317
L S D +RL+DL + ++ G+ + +FS D + IVSGS ++
Sbjct: 71 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTK--DVLSVAFSSDNRQIVSGSRDKT 128
Query: 318 IYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAP 358
I +W T + D ++H+ V+C F+P
Sbjct: 129 IKLWNT------LGVCKYTVQD-----ESHSEWVSCVRFSP 158
Score = 35.4 bits (80), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 13/93 (13%)
Query: 133 LVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHH 192
L S D +RL+DL + ++ G+ + +FS D + IVSGS ++ I +W T
Sbjct: 79 LSGSWDGTLRLWDLTTGTTTRRFVGHTK--DVLSVAFSSDNRQIVSGSRDKTIKLWNT-- 134
Query: 193 DYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAP 225
+ D ++H+ V+C F+P
Sbjct: 135 ----LGVCKYTVQD-----ESHSEWVSCVRFSP 158
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 52/108 (48%), Gaps = 8/108 (7%)
Query: 2 DKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWN 61
D LW ++ + L D + A+CF P +RY+L + +++W++ K +
Sbjct: 213 DGQAMLWDLNEGKHLYTLDGGDIINALCFSP--NRYWLCAATGPSIKIWDLEGKIIV--- 267
Query: 62 EVEGQTKLITAANFCENGK-FAVVGSYDGRCIFYT-TDQLKYHTQIHV 107
E + ++I+ ++ E + ++ S DG+ +F TD L Q+ +
Sbjct: 268 -DELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTI 314
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 80/196 (40%), Gaps = 22/196 (11%)
Query: 2 DKTVRLWHISRKEC------LCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDK 55
DKT+ +W ++R E H FV+ + D ++ LSGS DG LRLW++
Sbjct: 60 DKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVI-SSDGQFALSGSWDGTLRLWDLTTG 118
Query: 56 KVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQL-KYHTQIHVRSTRGKN 114
G TK + + F + + V GS D + T + KY Q S
Sbjct: 119 TTT--RRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHS----- 171
Query: 115 ATGRKISGIEPMPGEDKILVTS--NDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHD 172
+S + P ++ S D +++++L + L + G+ + + + S D
Sbjct: 172 ---EWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTV--TVSPD 226
Query: 173 GKYIVSGSENQCIYIW 188
G SG ++ +W
Sbjct: 227 GSLCASGGKDGQAMLW 242
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 69/175 (39%), Gaps = 26/175 (14%)
Query: 197 FSSVRRDRNDFWEGIKAHNAVVTCAVFAP-CPELIIAQ-------MEPDKSESTGY---- 244
F S+ ++ +K HN VT P P++I++ M + T Y
Sbjct: 20 FQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQ 79
Query: 245 -VLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFS 303
L +S + L S D +RL+DL + ++ G+ + +FS
Sbjct: 80 RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTK--DVLSVAFS 137
Query: 304 HDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAP 358
D + IVSGS ++ I +W T + D ++H+ V+C F+P
Sbjct: 138 SDNRQIVSGSRDKTIKLWNT------LGVCKYTVQD-----ESHSEWVSCVRFSP 181
Score = 35.4 bits (80), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 13/93 (13%)
Query: 133 LVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHH 192
L S D +RL+DL + ++ G+ + +FS D + IVSGS ++ I +W T
Sbjct: 102 LSGSWDGTLRLWDLTTGTTTRRFVGHTK--DVLSVAFSSDNRQIVSGSRDKTIKLWNT-- 157
Query: 193 DYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAP 225
+ D ++H+ V+C F+P
Sbjct: 158 ----LGVCKYTVQD-----ESHSEWVSCVRFSP 181
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 52/108 (48%), Gaps = 8/108 (7%)
Query: 2 DKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWN 61
D LW ++ + L D + A+CF P +RY+L + +++W++ K +
Sbjct: 236 DGQAMLWDLNEGKHLYTLDGGDIINALCFSP--NRYWLCAATGPSIKIWDLEGKIIV--- 290
Query: 62 EVEGQTKLITAANFCENGK-FAVVGSYDGRCIFYT-TDQLKYHTQIHV 107
E + ++I+ ++ E + ++ S DG+ +F TD L Q+ +
Sbjct: 291 -DELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTI 337
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/236 (19%), Positives = 91/236 (38%), Gaps = 60/236 (25%)
Query: 2 DKTVRLWHISRKECLCCF-QHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIP------- 53
D ++RLW++ +C F H V ++ F P D+R +SG D LR+WN+
Sbjct: 88 DHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSP-DNRQIVSGGRDNALRVWNVKGECMHTL 146
Query: 54 ----------------------------DKKVAVWN--------EVEGQTKLITAANFCE 77
D V VW+ +++G T +T+
Sbjct: 147 SRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSP 206
Query: 78 NGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSN 137
+G DG + + + +++ A G I+ I P + +
Sbjct: 207 DGSLCASSDKDGVARLWDLTKGEALSEM---------AAGAPINQICFSPNR-YWMCAAT 256
Query: 138 DSRIRLYDLRD----LNLSCKYKGYVNVSSQ-IKASFSHDGKYIVSGSENQCIYIW 188
+ IR++DL + + L+ +++G + + + ++S DG + SG + I +W
Sbjct: 257 EKGIRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSADGSTLYSGYTDNVIRVW 312
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/310 (19%), Positives = 122/310 (39%), Gaps = 50/310 (16%)
Query: 26 TAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVG 85
T + + P DR+ S + +PD+++ EG + ++ NG FAV
Sbjct: 39 TLLSWGPNPDRHSSECS-------YGLPDRRL------EGHSAFVSDVALSNNGNFAVSA 85
Query: 86 SYDGRCIFYT--TDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRL 143
S+D + Q +Y H + + + P +I+ D+ +R+
Sbjct: 86 SWDHSLRLWNLQNGQCQYKFLGHT----------KDVLSVAFSPDNRQIVSGGRDNALRV 135
Query: 144 YDLRDLNLSCKYKG-YVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRR 202
++++ + +G + + S ++ S S D IVSG + + +W D A V
Sbjct: 136 WNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVW----DLATGRLVTD 191
Query: 203 DRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEP------DKSESTGYVLNATGRKISGI 256
+K H VT +P L + + D ++ A G I+ I
Sbjct: 192 --------LKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGAPINQI 243
Query: 257 EPMPGEDKILVTSNDSRIRLYDLRD----LNLSCKYKGYVNVSSQ-IKASFSHDGKYIVS 311
P + + + IR++DL + + L+ +++G + + + ++S DG + S
Sbjct: 244 CFSPNR-YWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSADGSTLYS 302
Query: 312 GSENQCIYIW 321
G + I +W
Sbjct: 303 GYTDNVIRVW 312
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 84/380 (22%), Positives = 140/380 (36%), Gaps = 67/380 (17%)
Query: 5 VRLWHI-SRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEV 63
V LW+I SR + C H+ +V + F P D FL+ S D +R+W KKV
Sbjct: 871 VELWNIDSRLKVADCRGHLSWVHGVMFSP-DGSSFLTASDDQTIRVWET--KKV------ 921
Query: 64 EGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGI 123
C+N A+V + +F + + + V + RG K I
Sbjct: 922 ------------CKNS--AIVLKQEIDVVFQENETMV----LAVDNIRGLQLIAGKTGQI 963
Query: 124 EPMPGE-----------DKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHD 172
+ +P + + D I++ +L + + G+ I+ F+ D
Sbjct: 964 DYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQ--FTAD 1021
Query: 173 GKYIVSGSENQCIYIWKTHH-DYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELII 231
GK ++S SE+ I +W DY + + DF + + +I
Sbjct: 1022 GKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVIT 1081
Query: 232 AQMEPDKSESTGYVLN-ATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKG 290
++E D + G VL+ A + + + S D L++L+ N G
Sbjct: 1082 GRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHN------G 1135
Query: 291 YVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTH-----HDYAKFSSVRRDRNDFWEGIK 345
V S +FS DG + +G +N I IW H A S EG
Sbjct: 1136 CVRCS-----AFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPIS--------VEEGTA 1182
Query: 346 AHNAVVTCAVFAPCPELIIA 365
H VT F+P + +++
Sbjct: 1183 THGGWVTDVCFSPDSKTLVS 1202
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 84/380 (22%), Positives = 140/380 (36%), Gaps = 67/380 (17%)
Query: 5 VRLWHI-SRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEV 63
V LW+I SR + C H+ +V + F P D FL+ S D +R+W KKV
Sbjct: 864 VELWNIDSRLKVADCRGHLSWVHGVMFSP-DGSSFLTASDDQTIRVWET--KKV------ 914
Query: 64 EGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGI 123
C+N A+V + +F + + + V + RG K I
Sbjct: 915 ------------CKNS--AIVLKQEIDVVFQENETMV----LAVDNIRGLQLIAGKTGQI 956
Query: 124 EPMPGE-----------DKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHD 172
+ +P + + D I++ +L + + G+ I+ F+ D
Sbjct: 957 DYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQ--FTAD 1014
Query: 173 GKYIVSGSENQCIYIWKTHH-DYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELII 231
GK ++S SE+ I +W DY + + DF + + +I
Sbjct: 1015 GKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVIT 1074
Query: 232 AQMEPDKSESTGYVLN-ATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKG 290
++E D + G VL+ A + + + S D L++L+ N G
Sbjct: 1075 GRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHN------G 1128
Query: 291 YVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTH-----HDYAKFSSVRRDRNDFWEGIK 345
V S +FS DG + +G +N I IW H A S EG
Sbjct: 1129 CVRCS-----AFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPIS--------VEEGTA 1175
Query: 346 AHNAVVTCAVFAPCPELIIA 365
H VT F+P + +++
Sbjct: 1176 THGGWVTDVCFSPDSKTLVS 1195
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 21 HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNI-PDKKVAVWNEVEGQTKLITAANF 75
H + + + FHPRD LS S D LRLWNI D VA++ VEG + +A++
Sbjct: 150 HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY 205
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 21 HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNI-PDKKVAVWNEVEGQTKLITAANF 75
H + + + FHPRD LS S D LRLWNI D VA++ VEG + +A++
Sbjct: 113 HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY 168
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 21 HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNI-PDKKVAVWNEVEGQTKLITAANF 75
H + + + FHPRD LS S D LRLWNI D VA++ VEG + +A++
Sbjct: 113 HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY 168
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 21 HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNI-PDKKVAVWNEVEGQTKLITAANF 75
H + + + FHPRD LS S D LRLWNI D VA++ VEG + +A++
Sbjct: 114 HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY 169
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 21 HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNI-PDKKVAVWNEVEGQTKLITAANF 75
H + + + FHPRD LS S D LRLWNI D VA++ VEG + +A++
Sbjct: 109 HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY 164
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 78/194 (40%), Gaps = 16/194 (8%)
Query: 2 DKTVRLWHISRKECLCCFQ------HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDK 55
DK++ LW +++ + H FV + D ++ LSGS DG+LRLW++
Sbjct: 404 DKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLS-SDGQFALSGSWDGELRLWDLAAG 462
Query: 56 KVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTT-DQLKYHTQIHVRSTRGKN 114
G TK + + F + + V S D + T + KY R
Sbjct: 463 VST--RRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWV 520
Query: 115 ATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGK 174
+ R P + I+ S D +++++L + L G+ S + + S DG
Sbjct: 521 SCVR----FSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTV--AVSPDGS 574
Query: 175 YIVSGSENQCIYIW 188
SG ++ + +W
Sbjct: 575 LCASGGKDGVVLLW 588
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 59/304 (19%), Positives = 103/304 (33%), Gaps = 99/304 (32%)
Query: 21 HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIP--DKKVAVWN-EVEGQTKLITAANFCE 77
H D VTAI + +S S D + LW + DK V + G + +
Sbjct: 381 HTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSS 440
Query: 78 NGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSN 137
+G+FA+ GS+DG
Sbjct: 441 DGQFALSGSWDG------------------------------------------------ 452
Query: 138 DSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKF 197
+RL+DL + ++ G+ + +FS D + IVS S ++ I +W T +
Sbjct: 453 --ELRLWDLAAGVSTRRFVGHTK--DVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYT 508
Query: 198 SSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIE 257
S EG + H V+C F+P + ++
Sbjct: 509 IS---------EGGEGHRDWVSCVRFSP----------------------------NTLQ 531
Query: 258 PMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQC 317
P I+ S D +++++L + L G+ S + + S DG SG ++
Sbjct: 532 PT-----IVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTV--AVSPDGSLCASGGKDGV 584
Query: 318 IYIW 321
+ +W
Sbjct: 585 VLLW 588
Score = 34.7 bits (78), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 2 DKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKV 57
D V LW ++ + L + + A+CF P +RY+L + + +++W++ K +
Sbjct: 582 DGVVLLWDLAEGKKLYSLEANSVIHALCFSP--NRYWLCAATEHGIKIWDLESKSI 635
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 11/93 (11%)
Query: 266 LVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHH 325
L S D +RL+DL + ++ G+ + +FS D + IVS S ++ I +W T
Sbjct: 446 LSGSWDGELRLWDLAAGVSTRRFVGHTK--DVLSVAFSLDNRQIVSASRDRTIKLWNTLG 503
Query: 326 DYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAP 358
+ S EG + H V+C F+P
Sbjct: 504 ECKYTIS---------EGGEGHRDWVSCVRFSP 527
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 78/190 (41%), Gaps = 42/190 (22%)
Query: 133 LVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQI-KASFSHDGKYIVSGSENQCIYIWKTH 191
+ +S D +RL+DLR YK +V S++ +FS D + I+S + I +W
Sbjct: 92 ISSSWDKTLRLWDLR---TGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNIL 148
Query: 192 HDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGR 251
+ KFSS ++ + W V+C ++P + +
Sbjct: 149 GE-CKFSSAEKENHSDW---------VSCVRYSP--------------------IMKSAN 178
Query: 252 KISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVS 311
K+ P D R+++++ N +Y + S+ S S +GKYI +
Sbjct: 179 KVQPFAPY-----FASVGWDGRLKVWNT---NFQIRYTFKAHESNVNHLSISPNGKYIAT 230
Query: 312 GSENQCIYIW 321
G +++ + IW
Sbjct: 231 GGKDKKLLIW 240
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 84/193 (43%), Gaps = 27/193 (13%)
Query: 2 DKTVRLWHISRKECLCCF-QHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
DKT+RLW + F H V ++ F P D+R LS + +++LWNI +
Sbjct: 97 DKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSP-DNRQILSAGAEREIKLWNILGECKFSS 155
Query: 61 NEVEGQTKLITAANFCENGK-----------FAVVGSYDGRCIFYTTD-QLKYHTQIHVR 108
E E + ++ + K FA VG +DGR + T+ Q++Y + H
Sbjct: 156 AEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVG-WDGRLKVWNTNFQIRYTFKAHES 214
Query: 109 STRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKAS 168
+ ++ + P I D ++ ++D+ LNL+ + + S+ + +
Sbjct: 215 N----------VNHLSISPNGKYIATGGKDKKLLIWDI--LNLTYPQREFDAGSTINQIA 262
Query: 169 FSHDGKYIVSGSE 181
F+ +++ G++
Sbjct: 263 FNPKLQWVAVGTD 275
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 88/218 (40%), Gaps = 33/218 (15%)
Query: 2 DKTVRLWHISRKECLCCFQ-HIDFVTAI-CFHPRDDRYFLSGSLDGKLRLWNIPDKKVAV 59
D+TVR+W I + C F+ H V + ++ +Y ++GS D L +W +P +
Sbjct: 182 DRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVP 241
Query: 60 WNEVEGQTKLI-------------------TAANFCENGKFAVVGSYDGRCIFYTTDQLK 100
+ E L+ + +G V GSYD I + Q+K
Sbjct: 242 DHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMK 301
Query: 101 YHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVN 160
+++ S T R S I + + S D+ IR++DL + L +G+
Sbjct: 302 C---LYILSGH----TDRIYSTIYDHE-RKRCISASMDTTIRIWDLENGELMYTLQGHTA 353
Query: 161 VSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFS 198
+ ++ S K++VS + + I W + KFS
Sbjct: 354 LVGLLRLS----DKFLVSAAADGSIRGWDANDYSRKFS 387
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 68/148 (45%), Gaps = 18/148 (12%)
Query: 2 DKTVRLWHISRKECLCCFQ-HIDFVTAICF-HPRDDRYFLSGSLDGKLRLWNIPDKKVAV 59
D T+ +W +++ +CL H D + + + H R + +S S+D +R+W++ + ++
Sbjct: 289 DNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHER--KRCISASMDTTIRIWDLENGELMY 346
Query: 60 WNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRK 119
++G T L+ + KF V + DG + D Y + T
Sbjct: 347 --TLQGHTALVGLLRLSD--KFLVSAAADGSIRGW--DANDYSRKFSYHHT--------N 392
Query: 120 ISGIEPMPGEDKILVTSNDSRIRLYDLR 147
+S I D ILV+ ++++ +Y+LR
Sbjct: 393 LSAITTFYVSDNILVSGSENQFNIYNLR 420
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 47/223 (21%), Positives = 91/223 (40%), Gaps = 33/223 (14%)
Query: 132 ILVT-SNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKT 190
ILV+ S D +R++D++ + ++G+ + + + KYIV+GS + +++WK
Sbjct: 175 ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 234
Query: 191 -----------HHDYAKFSSVRRDRNDFWEGIKAH-----------NAVVTCAVFAPCPE 228
HDY + F ++ H N VV+ +
Sbjct: 235 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIV 294
Query: 229 LIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKY 288
+AQM+ Y+L+ +I + + S D+ IR++DL + L
Sbjct: 295 WDVAQMK------CLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL 348
Query: 289 KGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFS 331
+G+ + ++ S K++VS + + I W + KFS
Sbjct: 349 QGHTALVGLLRLS----DKFLVSAAADGSIRGWDANDYSRKFS 387
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 1 MDKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPD 54
MD T+R+W + E + Q H V + D++ +S + DG +R W+ D
Sbjct: 330 MDTTIRIWDLENGELMYTLQGHTALVGLLRL---SDKFLVSAAADGSIRGWDAND 381
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/301 (19%), Positives = 110/301 (36%), Gaps = 39/301 (12%)
Query: 2 DKTVRLWHISRKEC-----LCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKK 56
DKT+ W ++ + + F+ + C D Y LS S D LRLW++ +
Sbjct: 39 DKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGE 98
Query: 57 VAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNAT 116
+ G + + + + + GS D +T T + G N
Sbjct: 99 --TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLL------GHN-- 148
Query: 117 GRKISGIEPMPGEDK------ILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFS 170
+S + +P E I+ ND ++ ++L + + G+ + + + A S
Sbjct: 149 -DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTA--S 205
Query: 171 HDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDR--------NDFWEGIKAHNAVVTCAV 222
DG I S ++ I +W A ++ +D N +W + V
Sbjct: 206 PDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGI---KV 262
Query: 223 FAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDL 282
F+ P+ ++ + P E GY A +S G+ + D+ IR++ +
Sbjct: 263 FSLDPQYLVDDLRP---EFAGYSAAAEPHAVSLAWSADGQ-TLFAGYTDNVIRVWQVMTA 318
Query: 283 N 283
N
Sbjct: 319 N 319
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 87/218 (39%), Gaps = 33/218 (15%)
Query: 2 DKTVRLWHISRKECLCCFQ-HIDFVTAI-CFHPRDDRYFLSGSLDGKLRLWNIPDKKVAV 59
D+TVR+W I + C F+ H V + ++ +Y ++GS D L +W +P +
Sbjct: 182 DRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVP 241
Query: 60 WNEVEGQTKLI-------------------TAANFCENGKFAVVGSYDGRCIFYTTDQLK 100
+ E L+ + +G V GSYD I + Q K
Sbjct: 242 DHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXK 301
Query: 101 YHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVN 160
+++ S T R S I + + S D+ IR++DL + L +G+
Sbjct: 302 C---LYILSGH----TDRIYSTIYDHE-RKRCISASXDTTIRIWDLENGELXYTLQGHTA 353
Query: 161 VSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFS 198
+ ++ S K++VS + + I W + KFS
Sbjct: 354 LVGLLRLS----DKFLVSAAADGSIRGWDANDYSRKFS 387
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 67/148 (45%), Gaps = 18/148 (12%)
Query: 2 DKTVRLWHISRKECLCCFQ-HIDFVTAICF-HPRDDRYFLSGSLDGKLRLWNIPDKKVAV 59
D T+ +W +++ +CL H D + + + H R + +S S D +R+W++ + ++
Sbjct: 289 DNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHER--KRCISASXDTTIRIWDLENGELXY 346
Query: 60 WNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRK 119
++G T L+ + KF V + DG + D Y + T
Sbjct: 347 --TLQGHTALVGLLRLSD--KFLVSAAADGSIRGW--DANDYSRKFSYHHT--------N 392
Query: 120 ISGIEPMPGEDKILVTSNDSRIRLYDLR 147
+S I D ILV+ ++++ +Y+LR
Sbjct: 393 LSAITTFYVSDNILVSGSENQFNIYNLR 420
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 47/222 (21%), Positives = 89/222 (40%), Gaps = 31/222 (13%)
Query: 132 ILVT-SNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKT 190
ILV+ S D +R++D++ + ++G+ + + + KYIV+GS + +++WK
Sbjct: 175 ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 234
Query: 191 -----------HHDY----------AKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPEL 229
HDY F V R + H +V + L
Sbjct: 235 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNT--L 292
Query: 230 IIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYK 289
I+ + K Y+L+ +I + + S D+ IR++DL + L +
Sbjct: 293 IVWDVAQXKCL---YILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQ 349
Query: 290 GYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFS 331
G+ + ++ S K++VS + + I W + KFS
Sbjct: 350 GHTALVGLLRLS----DKFLVSAAADGSIRGWDANDYSRKFS 387
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/301 (19%), Positives = 110/301 (36%), Gaps = 39/301 (12%)
Query: 2 DKTVRLWHISRKEC-----LCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKK 56
DKT+ W ++ + + F+ + C D Y LS S D LRLW++ +
Sbjct: 39 DKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGE 98
Query: 57 VAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNAT 116
+ G + + + + + GS D +T T + G N
Sbjct: 99 --TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLL------GHN-- 148
Query: 117 GRKISGIEPMPGEDK------ILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFS 170
+S + +P E I+ ND ++ ++L + + G+ + + + A S
Sbjct: 149 -DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTA--S 205
Query: 171 HDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDR--------NDFWEGIKAHNAVVTCAV 222
DG I S ++ I +W A ++ +D N +W + V
Sbjct: 206 PDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGI---KV 262
Query: 223 FAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDL 282
F+ P+ ++ + P E GY A +S G+ + D+ IR++ +
Sbjct: 263 FSLDPQYLVDDLRP---EFAGYSKAAEPHAVSLAWSADGQ-TLFAGYTDNVIRVWQVMTA 318
Query: 283 N 283
N
Sbjct: 319 N 319
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/301 (19%), Positives = 110/301 (36%), Gaps = 39/301 (12%)
Query: 2 DKTVRLWHISRKE-----CLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKK 56
DKT+ W ++ + + F+ + C D Y LS S D LRLW++ +
Sbjct: 39 DKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGE 98
Query: 57 VAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNAT 116
+ G + + + + + GS D +T T + G N
Sbjct: 99 --TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLL------GHN-- 148
Query: 117 GRKISGIEPMPGEDK------ILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFS 170
+S + +P E I+ ND ++ ++L + + G+ + + + A S
Sbjct: 149 -DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTA--S 205
Query: 171 HDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDR--------NDFWEGIKAHNAVVTCAV 222
DG I S ++ I +W A ++ +D N +W + V
Sbjct: 206 PDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGI---KV 262
Query: 223 FAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDL 282
F+ P+ ++ + P E GY A +S G+ + D+ IR++ +
Sbjct: 263 FSLDPQYLVDDLRP---EFAGYSKAAEPHAVSLAWSADGQ-TLFAGYTDNVIRVWQVMTA 318
Query: 283 N 283
N
Sbjct: 319 N 319
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/301 (19%), Positives = 110/301 (36%), Gaps = 39/301 (12%)
Query: 2 DKTVRLWHISRKE-----CLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKK 56
DKT+ W ++ + + F+ + C D Y LS S D LRLW++ +
Sbjct: 33 DKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGE 92
Query: 57 VAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNAT 116
+ G + + + + + GS D +T T + G N
Sbjct: 93 --TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLL------GHN-- 142
Query: 117 GRKISGIEPMPGEDK------ILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFS 170
+S + +P E I+ ND ++ ++L + + G+ + + + A S
Sbjct: 143 -DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTA--S 199
Query: 171 HDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDR--------NDFWEGIKAHNAVVTCAV 222
DG I S ++ I +W A ++ +D N +W + V
Sbjct: 200 PDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGI---KV 256
Query: 223 FAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDL 282
F+ P+ ++ + P E GY A +S G+ + D+ IR++ +
Sbjct: 257 FSLDPQYLVDDLRP---EFAGYSKAAEPHAVSLAWSADGQ-TLFAGYTDNVIRVWQVMTA 312
Query: 283 N 283
N
Sbjct: 313 N 313
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/164 (20%), Positives = 71/164 (43%), Gaps = 18/164 (10%)
Query: 1 MDKTVRLWHISRKECLCCFQH--IDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVA 58
+D +RLW + + + +D T + F P D +Y +G+ GK+ ++ + K
Sbjct: 100 LDAHIRLWDLENGKQIKSIDAGPVDAWT-LAFSP-DSQYLATGTHVGKVNIFGVESGKKE 157
Query: 59 VWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFY--TTDQLKYHTQIHVRSTRGKNAT 116
++ + K I + + +GK+ G+ DG + T +L + + H R +
Sbjct: 158 Y--SLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFS 215
Query: 117 GRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVN 160
P ++ S+D I++YD++ NL+ G+ +
Sbjct: 216 ----------PDSQLLVTASDDGYIKIYDVQHANLAGTLSGHAS 249
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 33/163 (20%), Positives = 69/163 (42%), Gaps = 38/163 (23%)
Query: 39 LSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQ 98
++GSLD +++W D+++ + +EG + + + A S D
Sbjct: 52 VTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDA--------- 102
Query: 99 LKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDS----------RIRLYDL-- 146
H+R +N G++I I+ P + L S DS ++ ++ +
Sbjct: 103 -------HIRLWDLEN--GKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVES 153
Query: 147 --RDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYI 187
++ +L + K +++ ++S DGKY+ SG+ + I I
Sbjct: 154 GKKEYSLDTRGKFILSI------AYSPDGKYLASGAIDGIINI 190
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 58/301 (19%), Positives = 110/301 (36%), Gaps = 39/301 (12%)
Query: 2 DKTVRLWHISRKE-----CLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKK 56
DKT+ W ++ + + F+ + C D Y LS S D LRLW++ +
Sbjct: 39 DKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGE 98
Query: 57 VAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNAT 116
+ G + + + + + GS D +T T + G N
Sbjct: 99 --TYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKGQCLATLL------GHN-- 148
Query: 117 GRKISGIEPMPGEDK------ILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFS 170
+S + +P E I+ ND ++ ++L + + G+ + + + A S
Sbjct: 149 -DWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTA--S 205
Query: 171 HDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDR--------NDFWEGIKAHNAVVTCAV 222
DG I S ++ I +W A ++ +D N +W + V
Sbjct: 206 PDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDEVFSLAFSPNRYWLAAATATGI---KV 262
Query: 223 FAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDL 282
F+ P+ ++ + P E GY A +S G+ + D+ IR++ +
Sbjct: 263 FSLDPQYLVDDLRP---EFAGYSKAAEPHAVSLAWSADGQ-TLFAGYTDNVIRVWQVXTA 318
Query: 283 N 283
N
Sbjct: 319 N 319
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 57/295 (19%), Positives = 108/295 (36%), Gaps = 39/295 (13%)
Query: 2 DKTVRLWHISRKEC-----LCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKK 56
DKT+ W ++ + + F+ + C D Y LS S D LRLW++ +
Sbjct: 39 DKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGE 98
Query: 57 VAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNAT 116
+ G + + + + + GS D +T T + G N
Sbjct: 99 --TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLL------GHN-- 148
Query: 117 GRKISGIEPMPGEDK------ILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFS 170
+S + +P E I+ ND ++ ++L + + G+ + + + A S
Sbjct: 149 -DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTA--S 205
Query: 171 HDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDR--------NDFWEGIKAHNAVVTCAV 222
DG I S ++ I +W A ++ +D N +W + V
Sbjct: 206 PDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGI---KV 262
Query: 223 FAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLY 277
F+ P+ ++ + P E GY A +S G+ + D+ IR++
Sbjct: 263 FSLDPQYLVDDLRP---EFAGYSKAAEPHAVSLAWSADGQ-TLFAGYTDNVIRVW 313
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/212 (22%), Positives = 84/212 (39%), Gaps = 27/212 (12%)
Query: 127 PGEDKILVTSNDSRIRLYDLRDLNLSCKY---KGYVNVSSQIKASFSHDGKYIVSGSENQ 183
P + D RIR++ + CK +G+ K ++S G Y+ S S +
Sbjct: 26 PAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVR--KVAWSPCGNYLASASFDA 83
Query: 184 CIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKS---- 239
IWK + D F V ++ H V +AP L +A DKS
Sbjct: 84 TTCIWKKNQD--DFECVTT--------LEGHENEVKSVAWAPSGNL-LATCSRDKSVWVW 132
Query: 240 ---ESTGY----VLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV 292
E Y VLN+ + + + P ++ + S D ++LY + + C
Sbjct: 133 EVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEG 192
Query: 293 NVSSQIKASFSHDGKYIVSGSENQCIYIWKTH 324
+ S+ +F G+ + S S+++ + IW+ +
Sbjct: 193 HESTVWSLAFDPSGQRLASCSDDRTVRIWRQY 224
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 75/340 (22%), Positives = 116/340 (34%), Gaps = 90/340 (26%)
Query: 48 RLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAV-VGSYDGRC----IFYTTDQLKYH 102
R WN+P A + + AA + +G + S GRC ++ D
Sbjct: 17 REWNLPPNAPAC------MERQLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAP 70
Query: 103 TQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRD-----LNLSCKYKG 157
+ + A ++ + GE ILV S+ + L++L + ++ CKY+
Sbjct: 71 NEGFCSAGVQTEAGVADLTWV----GERGILVASDSGAVELWELDENETLIVSKFCKYEH 126
Query: 158 YVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAV 217
VS+ S G VSGS++ CI +W SS R AH A
Sbjct: 127 DDIVST---VSVLSSGTQAVSGSKDICIKVWDLAQQVV-LSSYR-----------AHAAQ 171
Query: 218 VTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVT-SNDSRIRL 276
VTC + P +D + ++ S D+RI L
Sbjct: 172 VTC-----------------------------------VAASPHKDSVFLSCSEDNRILL 196
Query: 277 YDLR----DLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSS 332
+D R + C GY+ S A + V G EN + + T SS
Sbjct: 197 WDTRCPKPASQIGCSAPGYLPTS---LAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSS 253
Query: 333 VRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKS 372
H+ VT VF+P +A + D S
Sbjct: 254 A------------VHSQCVTGLVFSPHSVPFLASLSEDCS 281
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 2 DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWN 51
D +++W ++++ L ++ H VT + P D FLS S D ++ LW+
Sbjct: 148 DICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWD 198
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 20/96 (20%)
Query: 2 DKTVRLWHISRKECLCCFQHIDFVTAICFHPRD-------DRYFLSGSLDGKLRLWNIPD 54
D+T+++W+ S E FV + H R DR +SGS D +RLW+I
Sbjct: 275 DRTIKVWNTSTCE---------FVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDI-- 323
Query: 55 KKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGR 90
+ A +EG +L+ F + K V G+YDG+
Sbjct: 324 ECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGK 357
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 2 DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNI 52
D T+RLW I CL + H + V I F D++ +SG+ DGK+++W++
Sbjct: 315 DNTIRLWDIECGACLRVLEGHEELVRCIRF---DNKRIVSGAYDGKIKVWDL 363
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 39/189 (20%), Positives = 82/189 (43%), Gaps = 21/189 (11%)
Query: 2 DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
D T+++W + EC H V + + D+R ++GS D +R+W++ ++
Sbjct: 152 DNTIKIWDKNTLECKRILTGHTGSVLCLQY---DERVIITGSSDSTVRVWDVNTGEML-- 206
Query: 61 NEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKI 120
N + + + F N V S D + + T I +R + G +
Sbjct: 207 NTLIHHCEAVLHLRF--NNGMMVTCSKDRSIAVW---DMASPTDITLR----RVLVGHR- 256
Query: 121 SGIEPMPGEDKILVT-SNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSG 179
+ + + +DK +V+ S D I++++ +C++ +N + A + + +VSG
Sbjct: 257 AAVNVVDFDDKYIVSASGDRTIKVWN----TSTCEFVRTLNGHKRGIACLQYRDRLVVSG 312
Query: 180 SENQCIYIW 188
S + I +W
Sbjct: 313 SSDNTIRLW 321
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 64/167 (38%), Gaps = 34/167 (20%)
Query: 169 FSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPE 228
+D + IVSG + I IW + K + H V C + E
Sbjct: 139 LQYDDQKIVSGLRDNTIKIWDKNTLECK------------RILTGHTGSVLCLQY---DE 183
Query: 229 LIIAQMEPDKSE-----STGYVLNATGRKISGIEPMPGEDKILVT-SNDSRIRLYDL--- 279
+I D + +TG +LN + + + ++VT S D I ++D+
Sbjct: 184 RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASP 243
Query: 280 RDLNLS---CKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKT 323
D+ L ++ VNV D KYIVS S ++ I +W T
Sbjct: 244 TDITLRRVLVGHRAAVNV-------VDFDDKYIVSASGDRTIKVWNT 283
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 57/127 (44%), Gaps = 14/127 (11%)
Query: 2 DKTVRLWHISRKECLCCF-QHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
D T+R+WH CF H + + + DD+ +S S+DG +RLW++ +
Sbjct: 268 DGTLRIWHGGNGNSQNCFYGHSQSIVSASW-VGDDK-VISCSMDGSVRLWSLKQNTLLAL 325
Query: 61 NEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKI 120
+ V+G I A ++G+ V DG+ Y +L +++ ++ G +
Sbjct: 326 SIVDGVP--IFAGRISQDGQKYAVAFMDGQVNVYDLKKL---------NSKSRSLYGNRD 374
Query: 121 SGIEPMP 127
+ P+P
Sbjct: 375 GILNPLP 381
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 31/161 (19%), Positives = 64/161 (39%), Gaps = 11/161 (6%)
Query: 34 DDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIF 93
D ++G +G+LRLWN K A+ N + I + + ++G + + I
Sbjct: 119 DGNSIVTGVENGELRLWN---KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTIL 175
Query: 94 YTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMP------GEDKILVTSNDSRIRLYDLR 147
+ ++ T G + SG + +DK ++ I +Y +
Sbjct: 176 WNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQIT 235
Query: 148 DLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIW 188
+ + K G+ S ++ F+ K ++S S++ + IW
Sbjct: 236 EKTPTGKLIGHHGPISVLE--FNDTNKLLLSASDDGTLRIW 274
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 11/116 (9%)
Query: 35 DRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFY 94
++ LS S DG LR+W+ + N G ++ I +A++ + K + S DG +
Sbjct: 259 NKLLLSASDDGTLRIWHGGNGNSQ--NCFYGHSQSIVSASWVGDDK-VISCSMDGSVRLW 315
Query: 95 TTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLN 150
+ LK +T + + G +IS G+ K V D ++ +YDL+ LN
Sbjct: 316 S---LKQNTLLALSIVDGVPIFAGRIS----QDGQ-KYAVAFMDGQVNVYDLKKLN 363
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 62/168 (36%), Gaps = 9/168 (5%)
Query: 21 HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGK 80
H ++++A C D L+ S DG LW++ ++ G L E G
Sbjct: 153 HTNYLSA-CSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGN 211
Query: 81 FAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSR 140
V G D + + + ++ + T + ++ + P D S+D+
Sbjct: 212 TFVSGGCDKKAMVW---DMRSGQCVQAFETHESD-----VNSVRYYPSGDAFASGSDDAT 263
Query: 141 IRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIW 188
RLYDLR Y + FS G+ + +G + I +W
Sbjct: 264 CRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVW 311
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 28/69 (40%)
Query: 253 ISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSG 312
++ + P D S+D+ RLYDLR Y + FS G+ + +G
Sbjct: 243 VNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAG 302
Query: 313 SENQCIYIW 321
+ I +W
Sbjct: 303 YNDYTINVW 311
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 14/114 (12%)
Query: 2 DKTVRLWHISRKECLCCFQ------HIDFVTAICFHPRDDRYFLSGSLDGKLRLWN--IP 53
D+T LW ++ + + F H V ++ + + F+SGS D +RLW+ I
Sbjct: 179 DQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRIT 238
Query: 54 DKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFY---TTDQLKYHTQ 104
+ V ++ EG I + F +G+ GS DG C + T QL+ + +
Sbjct: 239 SRAVRTYHGHEGD---INSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNR 289
Score = 31.6 bits (70), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 36/179 (20%), Positives = 75/179 (41%), Gaps = 16/179 (8%)
Query: 21 HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIP-DKKVAVWNE--VEGQTKLITAANFCE 77
H + ++ + P + ++GS D LW++ ++++++ G T + + +
Sbjct: 156 HKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINS 215
Query: 78 -NGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTS 136
N + GS D TT +L + +I R+ R + I+ ++ P + S
Sbjct: 216 LNANMFISGSCD------TTVRL-WDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGS 268
Query: 137 NDSRIRLYDLRDLNLSCKYKGYVNVSSQ-----IKASFSHDGKYIVSGSENQCIYIWKT 190
+D RL+D+R + Y + + +FS G+ + +G N Y+W T
Sbjct: 269 DDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDT 327
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 64/308 (20%), Positives = 119/308 (38%), Gaps = 39/308 (12%)
Query: 37 YFLSGSLDGKLRLWN-IPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRC-IFY 94
+ +S S DG+L +WN + +K + ++ + F NG+ G D C IF
Sbjct: 80 WIVSASQDGRLIVWNALTSQKT---HAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFN 136
Query: 95 TTDQLKYHTQIHVRSTRGKNATGRK--ISGIEPMPGEDKILVT-SNDSRIRLYDL----R 147
+ Q + V + TG K S + +P ++ L+T S D L+D+ R
Sbjct: 137 LSSQADRDGNMPVS----RVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQR 192
Query: 148 DLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIW---------KTHHDY-AKF 197
++ + S + +SGS + + +W +T+H +
Sbjct: 193 ISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDI 252
Query: 198 SSVR--RDRNDFWEGIKAHNAVVTCAVF--APCPELIIAQMEPDKSESTGYVLNATGRKI 253
+SV+ D F G TC +F +L + EPD++++ ++ + I
Sbjct: 253 NSVKFFPDGQRFGTGSDDG----TCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSI 308
Query: 254 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS 313
SG G D+ + L L ++G ++ S DG + +GS
Sbjct: 309 SGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISC-----LGLSSDGSALCTGS 363
Query: 314 ENQCIYIW 321
++ + IW
Sbjct: 364 WDKNLKIW 371
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 76/186 (40%), Gaps = 29/186 (15%)
Query: 111 RGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDL-------RDLNLSCKYKGYVNVSS 163
RG G +S + G +L S+D I L+D+ R ++ + G+ V
Sbjct: 182 RGHQKEGYGLSWNPNLNG--YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVE 239
Query: 164 QIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVF 223
+ H+ + S +++Q + IW T ++ S + AH A V C F
Sbjct: 240 DVAWHLLHESLF-GSVADDQKLMIWDTRNNNTSKPS---------HTVDAHTAEVNCLSF 289
Query: 224 APCPELIIAQMEPDKSESTGYVLNATGR---------KISGIEPMPGEDKILVTS-NDSR 273
P E I+A DK+ + + N + +I ++ P + IL +S D R
Sbjct: 290 NPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRR 349
Query: 274 IRLYDL 279
+ ++DL
Sbjct: 350 LHVWDL 355
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 48/115 (41%), Gaps = 17/115 (14%)
Query: 265 ILVTSNDSRIRLYDL-------RDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQC 317
+L S+D I L+D+ R ++ + G+ V + H+ + S +++Q
Sbjct: 201 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLF-GSVADDQK 259
Query: 318 IYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKS 372
+ IW T ++ S + AH A V C F P E I+A DK+
Sbjct: 260 LMIWDTRNNNTSKPS---------HTVDAHTAEVNCLSFNPYSEFILATGSADKT 305
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 74/174 (42%), Gaps = 22/174 (12%)
Query: 27 AICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGS 86
+ ++P + Y LS S D + LW+I N + ++I A N G AVV
Sbjct: 190 GLSWNPNLNGYLLSASDDHTICLWDI--------NATPKEHRVIDAKNIF-TGHTAVVED 240
Query: 87 YDGRCIFYTT-DQLKYHTQIHVRSTRGKN---------ATGRKISGIEPMPGEDKILVT- 135
+ + + ++ + TR N A +++ + P + IL T
Sbjct: 241 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 300
Query: 136 SNDSRIRLYDLRDLNLSC-KYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIW 188
S D + L+DLR+L L ++ + + Q++ S H+ + S ++ +++W
Sbjct: 301 SADKTVALWDLRNLKLKLHSFESHKDEIFQVQWS-PHNETILASSGTDRRLHVW 353
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 76/186 (40%), Gaps = 29/186 (15%)
Query: 111 RGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDL-------RDLNLSCKYKGYVNVSS 163
RG G +S + G +L S+D I L+D+ R ++ + G+ V
Sbjct: 178 RGHQKEGYGLSWNPNLNG--YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVE 235
Query: 164 QIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVF 223
+ H+ + S +++Q + IW T ++ S + AH A V C F
Sbjct: 236 DVAWHLLHESLF-GSVADDQKLMIWDTRNNNTSKPS---------HTVDAHTAEVNCLSF 285
Query: 224 APCPELIIAQMEPDKSESTGYVLNATGR---------KISGIEPMPGEDKILVTS-NDSR 273
P E I+A DK+ + + N + +I ++ P + IL +S D R
Sbjct: 286 NPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRR 345
Query: 274 IRLYDL 279
+ ++DL
Sbjct: 346 LHVWDL 351
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 48/115 (41%), Gaps = 17/115 (14%)
Query: 265 ILVTSNDSRIRLYDL-------RDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQC 317
+L S+D I L+D+ R ++ + G+ V + H+ + S +++Q
Sbjct: 197 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLF-GSVADDQK 255
Query: 318 IYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKS 372
+ IW T ++ S + AH A V C F P E I+A DK+
Sbjct: 256 LMIWDTRNNNTSKPS---------HTVDAHTAEVNCLSFNPYSEFILATGSADKT 301
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 74/174 (42%), Gaps = 22/174 (12%)
Query: 27 AICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGS 86
+ ++P + Y LS S D + LW+I N + ++I A N G AVV
Sbjct: 186 GLSWNPNLNGYLLSASDDHTICLWDI--------NATPKEHRVIDAKNIF-TGHTAVVED 236
Query: 87 YDGRCIFYTT-DQLKYHTQIHVRSTRGKN---------ATGRKISGIEPMPGEDKILVT- 135
+ + + ++ + TR N A +++ + P + IL T
Sbjct: 237 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 296
Query: 136 SNDSRIRLYDLRDLNLSC-KYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIW 188
S D + L+DLR+L L ++ + + Q++ S H+ + S ++ +++W
Sbjct: 297 SADKTVALWDLRNLKLKLHSFESHKDEIFQVQWS-PHNETILASSGTDRRLHVW 349
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 76/186 (40%), Gaps = 29/186 (15%)
Query: 111 RGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDL-------RDLNLSCKYKGYVNVSS 163
RG G +S + G +L S+D I L+D+ R ++ + G+ V
Sbjct: 180 RGHQKEGYGLSWNPNLNG--YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVE 237
Query: 164 QIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVF 223
+ H+ + S +++Q + IW T ++ S + AH A V C F
Sbjct: 238 DVAWHLLHESLF-GSVADDQKLMIWDTRNNNTSKPS---------HTVDAHTAEVNCLSF 287
Query: 224 APCPELIIAQMEPDKSESTGYVLNATGR---------KISGIEPMPGEDKILVTS-NDSR 273
P E I+A DK+ + + N + +I ++ P + IL +S D R
Sbjct: 288 NPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRR 347
Query: 274 IRLYDL 279
+ ++DL
Sbjct: 348 LHVWDL 353
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 48/115 (41%), Gaps = 17/115 (14%)
Query: 265 ILVTSNDSRIRLYDL-------RDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQC 317
+L S+D I L+D+ R ++ + G+ V + H+ + S +++Q
Sbjct: 199 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLF-GSVADDQK 257
Query: 318 IYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKS 372
+ IW T ++ S + AH A V C F P E I+A DK+
Sbjct: 258 LMIWDTRNNNTSKPS---------HTVDAHTAEVNCLSFNPYSEFILATGSADKT 303
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 74/174 (42%), Gaps = 22/174 (12%)
Query: 27 AICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGS 86
+ ++P + Y LS S D + LW+I N + ++I A N G AVV
Sbjct: 188 GLSWNPNLNGYLLSASDDHTICLWDI--------NATPKEHRVIDAKNIF-TGHTAVVED 238
Query: 87 YDGRCIFYTT-DQLKYHTQIHVRSTRGKN---------ATGRKISGIEPMPGEDKILVT- 135
+ + + ++ + TR N A +++ + P + IL T
Sbjct: 239 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 298
Query: 136 SNDSRIRLYDLRDLNLSC-KYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIW 188
S D + L+DLR+L L ++ + + Q++ S H+ + S ++ +++W
Sbjct: 299 SADKTVALWDLRNLKLKLHSFESHKDEIFQVQWS-PHNETILASSGTDRRLHVW 351
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 35.8 bits (81), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 74/186 (39%), Gaps = 29/186 (15%)
Query: 111 RGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCK-------YKGYVNVSS 163
RG G +S + G +L S+D I L+D+ + K + G+ V
Sbjct: 174 RGHQKEGYGLSWNPNLSGH--LLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVE 231
Query: 164 QIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVF 223
+ H+ + S +++Q + IW T + S + AH A V C F
Sbjct: 232 DVSWHLLHESLF-GSVADDQKLMIWDTRSNNTSKPS---------HSVDAHTAEVNCLSF 281
Query: 224 APCPELIIAQMEPDKSESTGYVLNATGR---------KISGIEPMPGEDKILVTS-NDSR 273
P E I+A DK+ + + N + +I ++ P + IL +S D R
Sbjct: 282 NPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRR 341
Query: 274 IRLYDL 279
+ ++DL
Sbjct: 342 LNVWDL 347
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 17/115 (14%)
Query: 265 ILVTSNDSRIRLYDLRDLNLSCK-------YKGYVNVSSQIKASFSHDGKYIVSGSENQC 317
+L S+D I L+D+ + K + G+ V + H+ + S +++Q
Sbjct: 193 LLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLF-GSVADDQK 251
Query: 318 IYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKS 372
+ IW T + S + AH A V C F P E I+A DK+
Sbjct: 252 LMIWDTRSNNTSKPS---------HSVDAHTAEVNCLSFNPYSEFILATGSADKT 297
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 35.4 bits (80), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 75/177 (42%), Gaps = 29/177 (16%)
Query: 123 IEPMPGEDKILVTSNDSRIRLYDL----RDLNLSCK--------YKGYVNVSSQIKASFS 170
IEP+ G +L +D I LYDL R +CK + S + +
Sbjct: 51 IEPVEGR-YMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYP 109
Query: 171 HDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAV------VTCAVFA 224
HD S S ++ + +W T+ + D +F E + +H+ AV
Sbjct: 110 HDTGMFTSSSFDKTLKVWDTN------TLQTADVFNFEETVYSHHMSPVSTKHCLVAVGT 163
Query: 225 PCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVT-SNDSRIRLYDLR 280
P++ + + KS S ++L ++I + P D IL T S DSR++L+D+R
Sbjct: 164 RGPKVQLCDL---KSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVR 217
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 33/96 (34%), Gaps = 28/96 (29%)
Query: 2 DKTVRLWHISRKE-CLCCFQ----------------HIDFVTAICFHPRDDRYFLSGSLD 44
D V+LW + R CL H V +CF D + L+ D
Sbjct: 208 DSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCF-TSDGLHLLTVGTD 266
Query: 45 GKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGK 80
++RLWN + G+ L+ C N K
Sbjct: 267 NRMRLWNSSN----------GENTLVNYGKVCNNSK 292
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 34.7 bits (78), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 71/190 (37%), Gaps = 14/190 (7%)
Query: 2 DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
D T LW I + F H V ++ P D R F+SG+ D +LW++ ++
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDV--REGMCR 219
Query: 61 NEVEGQTKLITAANFCENGKFAVVGSYDGRC-IFYTTDQLKYHTQIHVRSTRGKNATGRK 119
G I A F NG GS D C +F + T H G +
Sbjct: 220 QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFS 279
Query: 120 ISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSG 179
SG + G D D ++D + + G+ N S + + DG + +G
Sbjct: 280 KSGRLLLAGYD-------DFNCNVWDALKADRAGVLAGHDNRVSCL--GVTDDGMAVATG 330
Query: 180 SENQCIYIWK 189
S + + IW
Sbjct: 331 SWDSFLKIWN 340
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 55/295 (18%), Positives = 104/295 (35%), Gaps = 70/295 (23%)
Query: 34 DDRYFLSGSLDGKLRLWN-IPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCI 92
D R LS S DGKL +W+ KV + + ++ + + +G + G D C
Sbjct: 66 DSRLLLSASQDGKLIIWDSYTTNKV---HAIPLRSSWVMTCAYAPSGNYVACGGLDNICS 122
Query: 93 FYTTDQLKYHTQIHVRSTRGKNATGRKISGIEP------MPGEDKILVTSNDSRIRLYDL 146
Y ++++ G R+++G +++I+ +S D+ L+D+
Sbjct: 123 IY-----------NLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDI 171
Query: 147 RDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRND 206
+ + G+ + S + D + VSG+ + +W D
Sbjct: 172 ETGQQTTTFTGH--TGDVMSLSLAPDTRLFVSGACDASAKLW-----------------D 212
Query: 207 FWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKIL 266
EG+ C + E D I+ I P +
Sbjct: 213 VREGM--------------CRQTFTGH-ESD---------------INAICFFPNGNAFA 242
Query: 267 VTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIW 321
S+D+ RL+DLR Y + SFS G+ +++G ++ +W
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVW 297
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 34.7 bits (78), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 71/190 (37%), Gaps = 14/190 (7%)
Query: 2 DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
D T LW I + F H V ++ P D R F+SG+ D +LW++ ++
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDV--REGMCR 219
Query: 61 NEVEGQTKLITAANFCENGKFAVVGSYDGRC-IFYTTDQLKYHTQIHVRSTRGKNATGRK 119
G I A F NG GS D C +F + T H G +
Sbjct: 220 QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFS 279
Query: 120 ISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSG 179
SG + G D D ++D + + G+ N S + + DG + +G
Sbjct: 280 KSGRLLLAGYD-------DFNCNVWDALKADRAGVLAGHDNRVSCL--GVTDDGMAVATG 330
Query: 180 SENQCIYIWK 189
S + + IW
Sbjct: 331 SWDSFLKIWN 340
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 54/295 (18%), Positives = 104/295 (35%), Gaps = 70/295 (23%)
Query: 34 DDRYFLSGSLDGKLRLWN-IPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCI 92
D R +S S DGKL +W+ KV + + ++ + + +G + G D C
Sbjct: 66 DSRLLVSASQDGKLIIWDSYTTNKV---HAIPLRSSWVMTCAYAPSGNYVACGGLDNICS 122
Query: 93 FYTTDQLKYHTQIHVRSTRGKNATGRKISGIEP------MPGEDKILVTSNDSRIRLYDL 146
Y ++++ G R+++G +++I+ +S D+ L+D+
Sbjct: 123 IY-----------NLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDI 171
Query: 147 RDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRND 206
+ + G+ + S + D + VSG+ + +W D
Sbjct: 172 ETGQQTTTFTGH--TGDVMSLSLAPDTRLFVSGACDASAKLW-----------------D 212
Query: 207 FWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKIL 266
EG+ C + E D I+ I P +
Sbjct: 213 VREGM--------------CRQTFTGH-ESD---------------INAICFFPNGNAFA 242
Query: 267 VTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIW 321
S+D+ RL+DLR Y + SFS G+ +++G ++ +W
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVW 297
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 71/190 (37%), Gaps = 14/190 (7%)
Query: 2 DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
D T LW I + F H V ++ P D R F+SG+ D +LW++ ++
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDV--REGMCR 219
Query: 61 NEVEGQTKLITAANFCENGKFAVVGSYDGRC-IFYTTDQLKYHTQIHVRSTRGKNATGRK 119
G I A F NG GS D C +F + T H G +
Sbjct: 220 QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFS 279
Query: 120 ISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSG 179
SG + G D D ++D + + G+ N S + + DG + +G
Sbjct: 280 KSGRLLLAGYD-------DFNCNVWDALKADRAGVLAGHDNRVSCL--GVTDDGMAVATG 330
Query: 180 SENQCIYIWK 189
S + + IW
Sbjct: 331 SWDSFLKIWN 340
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 54/295 (18%), Positives = 104/295 (35%), Gaps = 70/295 (23%)
Query: 34 DDRYFLSGSLDGKLRLWN-IPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCI 92
D R +S S DGKL +W+ KV + + ++ + + +G + G D C
Sbjct: 66 DSRLLVSASQDGKLIIWDSYTTNKV---HAIPLRSSWVMTCAYAPSGNYVACGGLDNICS 122
Query: 93 FYTTDQLKYHTQIHVRSTRGKNATGRKISGIEP------MPGEDKILVTSNDSRIRLYDL 146
Y ++++ G R+++G +++I+ +S D+ L+D+
Sbjct: 123 IY-----------NLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDI 171
Query: 147 RDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRND 206
+ + G+ + S + D + VSG+ + +W D
Sbjct: 172 ETGQQTTTFTGH--TGDVMSLSLAPDTRLFVSGACDASAKLW-----------------D 212
Query: 207 FWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKIL 266
EG+ C + E D I+ I P +
Sbjct: 213 VREGM--------------CRQTFTGH-ESD---------------INAICFFPNGNAFA 242
Query: 267 VTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIW 321
S+D+ RL+DLR Y + SFS G+ +++G ++ +W
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVW 297
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 71/190 (37%), Gaps = 14/190 (7%)
Query: 2 DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
D T LW I + F H V ++ P D R F+SG+ D +LW++ ++
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDV--REGMCR 219
Query: 61 NEVEGQTKLITAANFCENGKFAVVGSYDGRC-IFYTTDQLKYHTQIHVRSTRGKNATGRK 119
G I A F NG GS D C +F + T H G +
Sbjct: 220 QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFS 279
Query: 120 ISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSG 179
SG + G D D ++D + + G+ N S + + DG + +G
Sbjct: 280 KSGRLLLAGYD-------DFNCNVWDALKADRAGVLAGHDNRVSCL--GVTDDGMAVATG 330
Query: 180 SENQCIYIWK 189
S + + IW
Sbjct: 331 SWDSFLKIWN 340
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 55/295 (18%), Positives = 104/295 (35%), Gaps = 70/295 (23%)
Query: 34 DDRYFLSGSLDGKLRLWN-IPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCI 92
D R LS S DGKL +W+ KV + + ++ + + +G + G D C
Sbjct: 66 DSRLLLSASQDGKLIIWDSYTTNKV---HAIPLRSSWVMTCAYAPSGNYVACGGLDNICS 122
Query: 93 FYTTDQLKYHTQIHVRSTRGKNATGRKISGIEP------MPGEDKILVTSNDSRIRLYDL 146
Y ++++ G R+++G +++I+ +S D+ L+D+
Sbjct: 123 IY-----------NLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDI 171
Query: 147 RDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRND 206
+ + G+ + S + D + VSG+ + +W D
Sbjct: 172 ETGQQTTTFTGH--TGDVMSLSLAPDTRLFVSGACDASAKLW-----------------D 212
Query: 207 FWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKIL 266
EG+ C + E D I+ I P +
Sbjct: 213 VREGM--------------CRQTFTGH-ESD---------------INAICFFPNGNAFA 242
Query: 267 VTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIW 321
S+D+ RL+DLR Y + SFS G+ +++G ++ +W
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVW 297
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 71/190 (37%), Gaps = 14/190 (7%)
Query: 2 DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
D T LW I + F H V ++ P D R F+SG+ D +LW++ ++
Sbjct: 174 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDV--REGMCR 230
Query: 61 NEVEGQTKLITAANFCENGKFAVVGSYDGRC-IFYTTDQLKYHTQIHVRSTRGKNATGRK 119
G I A F NG GS D C +F + T H G +
Sbjct: 231 QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFS 290
Query: 120 ISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSG 179
SG + G D D ++D + + G+ N S + + DG + +G
Sbjct: 291 KSGRLLLAGYD-------DFNCNVWDALKADRAGVLAGHDNRVSCL--GVTDDGMAVATG 341
Query: 180 SENQCIYIWK 189
S + + IW
Sbjct: 342 SWDSFLKIWN 351
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 54/295 (18%), Positives = 104/295 (35%), Gaps = 70/295 (23%)
Query: 34 DDRYFLSGSLDGKLRLWN-IPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCI 92
D R +S S DGKL +W+ KV + + ++ + + +G + G D C
Sbjct: 77 DSRLLVSASQDGKLIIWDSYTTNKV---HAIPLRSSWVMTCAYAPSGNYVACGGLDNICS 133
Query: 93 FYTTDQLKYHTQIHVRSTRGKNATGRKISGIEP------MPGEDKILVTSNDSRIRLYDL 146
Y ++++ G R+++G +++I+ +S D+ L+D+
Sbjct: 134 IY-----------NLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDI 182
Query: 147 RDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRND 206
+ + G+ + S + D + VSG+ + +W D
Sbjct: 183 ETGQQTTTFTGH--TGDVMSLSLAPDTRLFVSGACDASAKLW-----------------D 223
Query: 207 FWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKIL 266
EG+ C + E D I+ I P +
Sbjct: 224 VREGM--------------CRQTFTGH-ESD---------------INAICFFPNGNAFA 253
Query: 267 VTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIW 321
S+D+ RL+DLR Y + SFS G+ +++G ++ +W
Sbjct: 254 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVW 308
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 73/186 (39%), Gaps = 29/186 (15%)
Query: 111 RGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDL-------RDLNLSCKYKGYVNVSS 163
RG G +S + G +L S+D + L+D+ + ++ + G+ V
Sbjct: 176 RGHQKEGYGLSWNSNLSGH--LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVE 233
Query: 164 QIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVF 223
+ H+ + S +++Q + IW T + S D AH A V C F
Sbjct: 234 DVAWHLLHESLF-GSVADDQKLMIWDTRSNTTSKPSHLVD---------AHTAEVNCLSF 283
Query: 224 APCPELIIAQMEPDKSESTG---------YVLNATGRKISGIEPMPGEDKILVTS-NDSR 273
P E I+A DK+ + + + +I + P + IL +S D R
Sbjct: 284 NPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRR 343
Query: 274 IRLYDL 279
+ ++DL
Sbjct: 344 LNVWDL 349
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 47/115 (40%), Gaps = 17/115 (14%)
Query: 265 ILVTSNDSRIRLYDL-------RDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQC 317
+L S+D + L+D+ + ++ + G+ V + H+ + S +++Q
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLF-GSVADDQK 253
Query: 318 IYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKS 372
+ IW T + S D AH A V C F P E I+A DK+
Sbjct: 254 LMIWDTRSNTTSKPSHLVD---------AHTAEVNCLSFNPYSEFILATGSADKT 299
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 73/186 (39%), Gaps = 29/186 (15%)
Query: 111 RGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDL-------RDLNLSCKYKGYVNVSS 163
RG G +S + G +L S+D + L+D+ + ++ + G+ V
Sbjct: 176 RGHQKEGYGLSWNSNLSGH--LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVE 233
Query: 164 QIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVF 223
+ H+ + S +++Q + IW T + S D AH A V C F
Sbjct: 234 DVAWHLLHESLF-GSVADDQKLXIWDTRSNTTSKPSHLVD---------AHTAEVNCLSF 283
Query: 224 APCPELIIAQMEPDKSESTG---------YVLNATGRKISGIEPMPGEDKILVTS-NDSR 273
P E I+A DK+ + + + +I + P + IL +S D R
Sbjct: 284 NPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRR 343
Query: 274 IRLYDL 279
+ ++DL
Sbjct: 344 LNVWDL 349
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 47/115 (40%), Gaps = 17/115 (14%)
Query: 265 ILVTSNDSRIRLYDL-------RDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQC 317
+L S+D + L+D+ + ++ + G+ V + H+ + S +++Q
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLF-GSVADDQK 253
Query: 318 IYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKS 372
+ IW T + S D AH A V C F P E I+A DK+
Sbjct: 254 LXIWDTRSNTTSKPSHLVD---------AHTAEVNCLSFNPYSEFILATGSADKT 299
>pdb|4H5I|A Chain A, Crystal Structure Of The Guanine Nucleotide Exchange
Factor Sec12 (P1 Form)
pdb|4H5I|B Chain B, Crystal Structure Of The Guanine Nucleotide Exchange
Factor Sec12 (P1 Form)
pdb|4H5J|A Chain A, Crystal Structure Of The Guanine Nucleotide Exchange
Factor Sec12 (P64 Form)
pdb|4H5J|B Chain B, Crystal Structure Of The Guanine Nucleotide Exchange
Factor Sec12 (P64 Form)
Length = 365
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 57/130 (43%), Gaps = 3/130 (2%)
Query: 74 NFCENGKFAVVGSYD-GRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKI 132
NF + + S G+ I T +K +RS + N S GE +
Sbjct: 226 NFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSXDVDXKGELAV 285
Query: 133 LVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHH 192
L SND+ I L L+DL+ S +K + + + + S D Y+ S S I+I K
Sbjct: 286 LA-SNDNSIALVKLKDLSXSKIFK-QAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL 343
Query: 193 DYAKFSSVRR 202
+YA ++S ++
Sbjct: 344 NYANYTSXKQ 353
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 261 GEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYI 320
GE +L SND+ I L L+DL+ S +K + + + + S D Y+ S S I+I
Sbjct: 281 GELAVLA-SNDNSIALVKLKDLSXSKIFK-QAHSFAITEVTISPDSTYVASVSAANTIHI 338
Query: 321 WKTHHDYAKFSSVRR 335
K +YA ++S ++
Sbjct: 339 IKLPLNYANYTSXKQ 353
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 72/189 (38%), Gaps = 24/189 (12%)
Query: 2 DKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWN 61
D T+++W +CL + + D +SGS D L++WN + +
Sbjct: 138 DNTLKVWSAVTGKCLRTL--VGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECI--H 193
Query: 62 EVEGQTKLITAANFCENGKFAVVGSYDG--RCIFYTTDQLKYHTQIHVRSTRGKNATGRK 119
+ G T + + E K V GS D R T Q + HV + R GR
Sbjct: 194 TLYGHTSTVRCMHLHE--KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGR- 250
Query: 120 ISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSG 179
+++ + D ++++D +G+ N S DG ++VSG
Sbjct: 251 -----------RVVSGAYDFMVKVWDPETETCLHTLQGHTNRV----YSLQFDGIHVVSG 295
Query: 180 SENQCIYIW 188
S + I +W
Sbjct: 296 SLDTSIRVW 304
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 32/147 (21%), Positives = 67/147 (45%), Gaps = 15/147 (10%)
Query: 2 DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
D V++W + CL Q H + V ++ F D + +SGSLD +R+W++
Sbjct: 258 DFMVKVWDPETETCLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVETGNCI-- 312
Query: 61 NEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKI 120
+ + G L + +N V G+ D T T +++ +G N +
Sbjct: 313 HTLTGHQSLTSGMELKDN--ILVSGNADS-----TVKIWDIKTGQCLQTLQGPNKHQSAV 365
Query: 121 SGIEPMPGEDKILVTSNDSRIRLYDLR 147
+ ++ ++ ++ +S+D ++L+DL+
Sbjct: 366 TCLQ--FNKNFVITSSDDGTVKLWDLK 390
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 50/297 (16%), Positives = 115/297 (38%), Gaps = 41/297 (13%)
Query: 42 SLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKY 101
+L+ + +WN V+ E + ++ + + + +G F VG +G Y +
Sbjct: 110 ALERNVYVWNADSGSVSALAETD-ESTYVASVKWSHDGSFLSVGLGNGLVDIYDVE---- 164
Query: 102 HTQIHVRSTRGKNATGRKISGIEPMPGEDKILVT-SNDSRIRLYDLRDLNLSC-KYKGYV 159
+Q +R+ G A + + +L + S I +D+R N +G+
Sbjct: 165 -SQTKLRTMAGHQAR------VGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGH- 216
Query: 160 NVSSQI-KASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVV 218
SS++ ++ DG + SG + + IW KF+ HNA V
Sbjct: 217 --SSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTN------------HNAAV 262
Query: 219 TCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEP---------MPGEDKILVTS 269
+ P ++A + + ATG +++ ++ P +I+ T
Sbjct: 263 KAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTH 322
Query: 270 N--DSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTH 324
D+ + ++ L+ + + + + ++ S DG+ + + + ++ + W+ +
Sbjct: 323 GFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVY 379
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 2 DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAV 59
D +V++W +S+K L + H V + P D FLS DG++ LW+ K A
Sbjct: 160 DFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPAT 218
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 62/318 (19%), Positives = 126/318 (39%), Gaps = 44/318 (13%)
Query: 2 DKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWN-IPDKKVAVW 60
DKT++++ E L + + C DDR+ + S+D K+++WN + + V +
Sbjct: 642 DKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTY 701
Query: 61 NEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKI 120
+E Q + +F + ++ + C D Q R+T +
Sbjct: 702 DEHSEQ---VNCCHFTNSSHHLLLATGSSDCFLKLWDL----NQKECRNTMFGHTNSVNH 754
Query: 121 SGIEPMPGEDKILVT-SNDSRIRLYDL------RDLNLSCKYKGYVNVSSQIKA-----S 168
P +DK+L + S D ++L+D + +N+ + + ++ S
Sbjct: 755 CRFSP---DDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVIVKCCS 811
Query: 169 FSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPE 228
+S DG I+ ++N+ I+++ H E H++ + F+P
Sbjct: 812 WSADGARIMVAAKNK-IFLFDIH-----------TSGLLGEIHTGHHSTIQYCDFSPQNH 859
Query: 229 LIIAQM-----EPDKSESTGYVLNATGRK--ISGIEPMPGEDKILVTSNDSRIRLYDLRD 281
L + + E ++S V + G + G+ P L +S+D IRL++ +
Sbjct: 860 LAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKK 919
Query: 282 L--NLSCKYKGYVNVSSQ 297
+ N + K V+V Q
Sbjct: 920 VCKNSAVMLKQEVDVVFQ 937
>pdb|3GRE|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Vps15 Wd
Repeat Domain
Length = 437
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 59/140 (42%), Gaps = 18/140 (12%)
Query: 25 VTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQ------TKLITAANFCEN 78
+T+ P + Y ++GS G +++WN+ K + EV + +T N
Sbjct: 66 ITSSAVSPGETPYLITGSDQGVIKIWNL---KEIIVGEVYSSSLTYDCSSTVTQITMIPN 122
Query: 79 GKFAVVGSYDGRCIFYTTDQLKYHTQIH------VRSTRGKNATGRKIS-GIEPMPGEDK 131
V S DG+ I + + +++ +R KN + + + E+K
Sbjct: 123 FDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEK 182
Query: 132 ILVT--SNDSRIRLYDLRDL 149
L+ +N SR+ ++D+R L
Sbjct: 183 SLLVALTNLSRVIIFDIRTL 202
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 11/102 (10%)
Query: 2 DKTVRLWHISRKECLCCF----QHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKV 57
D T+R+W ++ +C+ + Q + + R +S SLDG L + + +V
Sbjct: 273 DATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGR-IISLSLDGTLNFYELGHDEV 331
Query: 58 AVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQL 99
+ G K ITA + GSYDGR + +++ +
Sbjct: 332 L--KTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM 367
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 56/140 (40%), Gaps = 42/140 (30%)
Query: 36 RYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFA------VVGSYDG 89
RY +G G L +WN+ ++ V++ V+G ++I A + V GS DG
Sbjct: 81 RYLATGDFGGNLHIWNLEAPEMPVYS-VKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDG 139
Query: 90 RCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDK------------------ 131
+ V R K+ ++ +EP+ GE+K
Sbjct: 140 --------------TVKVWDPRQKD---DPVANMEPVQGENKRDCWTVAFGNAYNQEERV 182
Query: 132 ILVTSNDSRIRLYDLRDLNL 151
+ ++ I+L+DLR++ L
Sbjct: 183 VCAGYDNGDIKLFDLRNMAL 202
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 73/173 (42%), Gaps = 28/173 (16%)
Query: 2 DKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLD------GKLRLWNIP-D 54
D +++LW +S +C+ ++ V + F P + YFL+ LD G + ++ I D
Sbjct: 95 DYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGN-YFLA-ILDNVMKNPGSINIYEIERD 152
Query: 55 KKVAVWNEVEGQT--KLI--------TAANFCENGKFAVVGSYDGRCIFY-TTDQLKYHT 103
+V + K+I T A + GK+ + G DG+ Y ++ +Y
Sbjct: 153 SATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVD 212
Query: 104 QIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYK 156
I + + IS ++ P + +S D+ L D+ L + KY+
Sbjct: 213 SIDLHE--------KSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE 257
>pdb|3LO3|A Chain A, The Crystal Structure Of A Conserved Functionally Unknown
Protein From Colwellia Psychrerythraea 34h.
pdb|3LO3|B Chain B, The Crystal Structure Of A Conserved Functionally Unknown
Protein From Colwellia Psychrerythraea 34h.
pdb|3LO3|C Chain C, The Crystal Structure Of A Conserved Functionally Unknown
Protein From Colwellia Psychrerythraea 34h.
pdb|3LO3|D Chain D, The Crystal Structure Of A Conserved Functionally Unknown
Protein From Colwellia Psychrerythraea 34h.
pdb|3LO3|E Chain E, The Crystal Structure Of A Conserved Functionally Unknown
Protein From Colwellia Psychrerythraea 34h.
pdb|3LO3|F Chain F, The Crystal Structure Of A Conserved Functionally Unknown
Protein From Colwellia Psychrerythraea 34h.
pdb|3LO3|G Chain G, The Crystal Structure Of A Conserved Functionally Unknown
Protein From Colwellia Psychrerythraea 34h.
pdb|3LO3|H Chain H, The Crystal Structure Of A Conserved Functionally Unknown
Protein From Colwellia Psychrerythraea 34h.
pdb|3LO3|I Chain I, The Crystal Structure Of A Conserved Functionally Unknown
Protein From Colwellia Psychrerythraea 34h.
pdb|3LO3|J Chain J, The Crystal Structure Of A Conserved Functionally Unknown
Protein From Colwellia Psychrerythraea 34h.
pdb|3LO3|K Chain K, The Crystal Structure Of A Conserved Functionally Unknown
Protein From Colwellia Psychrerythraea 34h.
pdb|3LO3|L Chain L, The Crystal Structure Of A Conserved Functionally Unknown
Protein From Colwellia Psychrerythraea 34h.
pdb|3LO3|M Chain M, The Crystal Structure Of A Conserved Functionally Unknown
Protein From Colwellia Psychrerythraea 34h.
pdb|3LO3|N Chain N, The Crystal Structure Of A Conserved Functionally Unknown
Protein From Colwellia Psychrerythraea 34h.
pdb|3LO3|O Chain O, The Crystal Structure Of A Conserved Functionally Unknown
Protein From Colwellia Psychrerythraea 34h.
pdb|3LO3|P Chain P, The Crystal Structure Of A Conserved Functionally Unknown
Protein From Colwellia Psychrerythraea 34h.
pdb|3LO3|Q Chain Q, The Crystal Structure Of A Conserved Functionally Unknown
Protein From Colwellia Psychrerythraea 34h.
pdb|3LO3|R Chain R, The Crystal Structure Of A Conserved Functionally Unknown
Protein From Colwellia Psychrerythraea 34h.
pdb|3LO3|S Chain S, The Crystal Structure Of A Conserved Functionally Unknown
Protein From Colwellia Psychrerythraea 34h.
pdb|3LO3|T Chain T, The Crystal Structure Of A Conserved Functionally Unknown
Protein From Colwellia Psychrerythraea 34h.
pdb|3LO3|U Chain U, The Crystal Structure Of A Conserved Functionally Unknown
Protein From Colwellia Psychrerythraea 34h.
pdb|3LO3|V Chain V, The Crystal Structure Of A Conserved Functionally Unknown
Protein From Colwellia Psychrerythraea 34h.
pdb|3LO3|W Chain W, The Crystal Structure Of A Conserved Functionally Unknown
Protein From Colwellia Psychrerythraea 34h.
pdb|3LO3|X Chain X, The Crystal Structure Of A Conserved Functionally Unknown
Protein From Colwellia Psychrerythraea 34h.
pdb|3LO3|Y Chain Y, The Crystal Structure Of A Conserved Functionally Unknown
Protein From Colwellia Psychrerythraea 34h.
pdb|3LO3|Z Chain Z, The Crystal Structure Of A Conserved Functionally Unknown
Protein From Colwellia Psychrerythraea 34h.
pdb|3LO3|AA Chain a, The Crystal Structure Of A Conserved Functionally Unknown
Protein From Colwellia Psychrerythraea 34h.
pdb|3LO3|BB Chain b, The Crystal Structure Of A Conserved Functionally Unknown
Protein From Colwellia Psychrerythraea 34h
Length = 94
Score = 28.5 bits (62), Expect = 6.7, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 33/91 (36%), Gaps = 13/91 (14%)
Query: 114 NATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVS---SQIKASFS 170
NAT I G+ P E +++ Y R + KY G V V Q+ F
Sbjct: 2 NATAYIIVGLTPKDAE----------KLQQYGARVASTLAKYSGEVLVKGSVEQLHGKFE 51
Query: 171 HDGKYIVSGSENQCIYIWKTHHDYAKFSSVR 201
H + I+ + Y W +Y S R
Sbjct: 52 HKAQVILEFPSREDAYNWYHSEEYQALISTR 82
Score = 28.5 bits (62), Expect = 6.7, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 33/91 (36%), Gaps = 13/91 (14%)
Query: 247 NATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVS---SQIKASFS 303
NAT I G+ P E +++ Y R + KY G V V Q+ F
Sbjct: 2 NATAYIIVGLTPKDAE----------KLQQYGARVASTLAKYSGEVLVKGSVEQLHGKFE 51
Query: 304 HDGKYIVSGSENQCIYIWKTHHDYAKFSSVR 334
H + I+ + Y W +Y S R
Sbjct: 52 HKAQVILEFPSREDAYNWYHSEEYQALISTR 82
>pdb|3V0J|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Deletion Of 401-405
pdb|3V0J|B Chain B, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Deletion Of 401-405
Length = 334
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 50/132 (37%), Gaps = 18/132 (13%)
Query: 204 RNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEP-DKSESTGYVLNATGRKISGIEPMPGE 262
R D ++G++ + + F + Q+ P K + TG + A I G+ G
Sbjct: 161 RTDVFQGVETASQIRYVGYFEKIKKNYGGQLPPMKKLKVTGVTITA----IQGVGRGNGS 216
Query: 263 D-KILVTSNDSRIRL------------YDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYI 309
D + + S + L YD D ++C+ K ++ IK F K +
Sbjct: 217 DLSMQIVSERQEVLLCKFAEGYNCALQYDATDDCVTCEVKNCPVLAGDIKVRFMSTSKSL 276
Query: 310 VSGSENQCIYIW 321
G +N Y W
Sbjct: 277 PRGYDNCPFYFW 288
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,882,988
Number of Sequences: 62578
Number of extensions: 546979
Number of successful extensions: 2034
Number of sequences better than 100.0: 75
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 1428
Number of HSP's gapped (non-prelim): 268
length of query: 408
length of database: 14,973,337
effective HSP length: 101
effective length of query: 307
effective length of database: 8,652,959
effective search space: 2656458413
effective search space used: 2656458413
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)