Query psy988
Match_columns 408
No_of_seqs 900 out of 1460
Neff 12.3
Searched_HMMs 29240
Date Fri Aug 16 22:00:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy988.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/988hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nr0_A Actin interacting prote 100.0 7.2E-53 2.5E-57 384.7 46.9 357 2-398 38-570 (611)
2 1vyh_C Platelet-activating fac 100.0 9.7E-53 3.3E-57 365.4 37.2 306 19-394 105-410 (410)
3 3ow8_A WD repeat-containing pr 100.0 8.8E-52 3E-56 347.1 38.5 287 21-394 31-320 (321)
4 1nr0_A Actin interacting prote 100.0 1E-51 3.5E-56 377.1 40.8 358 1-394 168-610 (611)
5 2ymu_A WD-40 repeat protein; u 100.0 9.7E-51 3.3E-55 370.1 42.4 329 2-392 242-577 (577)
6 1got_B GT-beta; complex (GTP-b 100.0 1.3E-50 4.4E-55 343.7 39.8 294 14-392 46-340 (340)
7 3iz6_a 40S ribosomal protein R 100.0 2.2E-51 7.6E-56 353.6 30.4 317 4-398 47-378 (380)
8 4gqb_B Methylosome protein 50; 100.0 4.3E-50 1.5E-54 339.1 35.1 310 6-403 17-339 (344)
9 2pbi_B Guanine nucleotide-bind 100.0 6.7E-50 2.3E-54 340.6 35.1 296 15-392 56-354 (354)
10 2ynn_A Coatomer subunit beta'; 100.0 8.7E-49 3E-53 327.1 40.6 293 15-395 5-302 (304)
11 3fm0_A Protein CIAO1; WDR39,SG 100.0 4.6E-49 1.6E-53 334.6 38.3 316 14-403 6-343 (345)
12 4g56_B MGC81050 protein; prote 100.0 9.7E-50 3.3E-54 339.8 33.5 309 4-397 27-345 (357)
13 2ymu_A WD-40 repeat protein; u 100.0 1.5E-48 5E-53 355.8 42.6 335 2-399 201-542 (577)
14 4ery_A WD repeat-containing pr 100.0 1.2E-47 4.1E-52 322.1 41.5 294 14-394 14-311 (312)
15 1erj_A Transcriptional repress 100.0 2.9E-47 9.8E-52 329.5 39.8 313 5-396 42-390 (393)
16 3frx_A Guanine nucleotide-bind 100.0 3.4E-47 1.2E-51 319.5 39.1 300 15-396 9-318 (319)
17 2xzm_R RACK1; ribosome, transl 100.0 6E-47 2E-51 321.7 39.1 307 15-397 13-342 (343)
18 1r5m_A SIR4-interacting protei 100.0 1.1E-46 3.8E-51 330.5 39.8 349 4-394 26-424 (425)
19 2hes_X YDR267CP; beta-propelle 100.0 1.3E-46 4.5E-51 317.5 36.3 311 11-395 2-328 (330)
20 2oaj_A Protein SNI1; WD40 repe 100.0 3.2E-46 1.1E-50 352.4 39.8 374 1-398 37-608 (902)
21 3sfz_A APAF-1, apoptotic pepti 100.0 5.4E-46 1.9E-50 366.9 40.6 367 1-402 677-1165(1249)
22 2pm9_A Protein WEB1, protein t 100.0 2E-47 6.7E-52 334.3 26.8 330 2-396 44-415 (416)
23 2oaj_A Protein SNI1; WD40 repe 100.0 3E-46 1E-50 352.5 36.4 372 1-397 77-666 (902)
24 3ow8_A WD repeat-containing pr 100.0 1.4E-45 4.8E-50 309.5 35.8 262 1-324 56-320 (321)
25 1vyh_C Platelet-activating fac 100.0 6.2E-46 2.1E-50 322.6 34.3 261 1-323 128-409 (410)
26 3sfz_A APAF-1, apoptotic pepti 100.0 7E-46 2.4E-50 366.1 38.7 364 2-403 636-1124(1249)
27 3ei3_B DNA damage-binding prot 100.0 2.9E-45 9.8E-50 316.8 35.7 303 8-395 58-382 (383)
28 4aow_A Guanine nucleotide-bind 100.0 1.1E-44 3.9E-49 308.1 38.9 305 14-398 29-340 (340)
29 3zwl_B Eukaryotic translation 100.0 1.5E-44 5.2E-49 310.9 38.9 293 20-401 30-352 (369)
30 1pgu_A Actin interacting prote 100.0 1.2E-44 4.1E-49 332.6 39.7 351 2-395 182-614 (615)
31 1got_B GT-beta; complex (GTP-b 100.0 2.3E-44 7.9E-49 305.2 37.5 263 1-322 75-340 (340)
32 4e54_B DNA damage-binding prot 100.0 3.4E-45 1.2E-49 321.0 32.0 297 20-398 117-433 (435)
33 1sq9_A Antiviral protein SKI8; 100.0 9.3E-45 3.2E-49 315.4 34.2 309 21-397 15-397 (397)
34 3gre_A Serine/threonine-protei 100.0 8.5E-45 2.9E-49 319.5 33.7 325 7-392 47-437 (437)
35 4gqb_B Methylosome protein 50; 100.0 1.7E-44 5.9E-49 304.8 32.1 253 15-326 75-332 (344)
36 3vl1_A 26S proteasome regulato 100.0 2.2E-44 7.6E-49 315.3 34.0 316 2-395 77-419 (420)
37 1gxr_A ESG1, transducin-like e 100.0 1.2E-43 4.1E-48 301.5 36.7 290 14-393 43-335 (337)
38 2ynn_A Coatomer subunit beta'; 100.0 4.3E-44 1.5E-48 298.7 33.3 259 60-403 6-267 (304)
39 3mkq_A Coatomer beta'-subunit; 100.0 1E-43 3.6E-48 336.5 39.6 361 2-403 34-468 (814)
40 1k8k_C P40, ARP2/3 complex 41 100.0 3.6E-44 1.2E-48 308.9 31.9 322 21-398 7-364 (372)
41 1pgu_A Actin interacting prote 100.0 4.1E-43 1.4E-47 322.4 40.6 357 1-396 86-573 (615)
42 3fm0_A Protein CIAO1; WDR39,SG 100.0 5.7E-43 2E-47 297.1 37.9 286 1-326 36-336 (345)
43 3i2n_A WD repeat-containing pr 100.0 9.8E-44 3.3E-48 304.5 33.3 302 21-398 17-356 (357)
44 3dm0_A Maltose-binding peripla 100.0 4.2E-43 1.4E-47 325.5 39.7 304 17-395 376-693 (694)
45 2j04_B YDR362CP, TAU91; beta p 100.0 2.6E-44 9.1E-49 318.2 29.5 313 1-397 181-519 (524)
46 2pbi_B Guanine nucleotide-bind 100.0 5.6E-43 1.9E-47 298.0 36.6 264 1-322 84-354 (354)
47 3k26_A Polycomb protein EED; W 100.0 1.1E-43 3.8E-48 305.2 31.5 316 21-395 17-366 (366)
48 3odt_A Protein DOA1; ubiquitin 100.0 7.9E-43 2.7E-47 293.3 35.7 292 14-402 9-303 (313)
49 3vl1_A 26S proteasome regulato 100.0 2.1E-43 7.1E-48 309.2 32.0 307 25-397 59-367 (420)
50 4g56_B MGC81050 protein; prote 100.0 2.2E-43 7.6E-48 300.6 31.3 266 2-326 69-344 (357)
51 1erj_A Transcriptional repress 100.0 1E-42 3.5E-47 301.0 35.7 275 2-325 84-389 (393)
52 3dwl_C Actin-related protein 2 100.0 2.1E-44 7.2E-49 310.8 24.3 317 21-393 10-377 (377)
53 4a11_B DNA excision repair pro 100.0 2.2E-43 7.4E-48 307.9 30.2 330 2-401 22-371 (408)
54 3frx_A Guanine nucleotide-bind 100.0 1.8E-42 6.1E-47 290.8 34.5 263 1-326 38-318 (319)
55 4h5i_A Guanine nucleotide-exch 100.0 2.1E-42 7.1E-47 295.4 33.4 295 20-396 12-344 (365)
56 3mkq_A Coatomer beta'-subunit; 100.0 4.1E-42 1.4E-46 325.7 39.0 354 15-396 5-424 (814)
57 4gga_A P55CDC, cell division c 100.0 1.1E-41 3.8E-46 297.4 38.7 287 25-397 108-397 (420)
58 3iz6_a 40S ribosomal protein R 100.0 7.7E-43 2.6E-47 300.4 30.2 280 1-326 86-376 (380)
59 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2.8E-41 9.4E-46 297.6 40.4 297 1-397 137-444 (445)
60 2pm9_A Protein WEB1, protein t 100.0 2.4E-43 8.1E-48 308.5 25.4 304 21-400 11-342 (416)
61 2xzm_R RACK1; ribosome, transl 100.0 1.2E-41 4.2E-46 289.0 35.0 266 1-326 47-341 (343)
62 4ery_A WD repeat-containing pr 100.0 3.7E-41 1.3E-45 282.7 36.3 266 1-324 43-311 (312)
63 2hes_X YDR267CP; beta-propelle 100.0 4.9E-41 1.7E-45 283.5 37.2 276 1-325 32-328 (330)
64 3v7d_B Cell division control p 100.0 3.6E-41 1.2E-45 298.7 36.5 303 1-393 140-461 (464)
65 4aez_A CDC20, WD repeat-contai 100.0 2E-41 6.7E-46 294.2 33.8 285 25-401 96-386 (401)
66 3mmy_A MRNA export factor; mRN 100.0 1.2E-41 4.1E-46 292.7 31.6 309 6-398 22-349 (368)
67 4ggc_A P55CDC, cell division c 100.0 3.4E-40 1.2E-44 277.9 39.0 287 25-397 28-317 (318)
68 1gxr_A ESG1, transducin-like e 100.0 4.7E-41 1.6E-45 285.5 30.0 291 21-399 8-300 (337)
69 1r5m_A SIR4-interacting protei 100.0 1.5E-40 5E-45 291.6 33.5 303 2-324 67-424 (425)
70 3k26_A Polycomb protein EED; W 100.0 1.4E-40 4.7E-45 285.9 32.2 280 2-324 43-365 (366)
71 2pm7_B Protein transport prote 100.0 1.8E-40 6.1E-45 275.8 31.5 257 20-325 7-285 (297)
72 3dw8_B Serine/threonine-protei 100.0 1.1E-40 3.8E-45 294.3 31.8 323 19-394 25-445 (447)
73 1yfq_A Cell cycle arrest prote 100.0 2.2E-40 7.5E-45 281.9 31.5 283 20-393 9-322 (342)
74 3ei3_B DNA damage-binding prot 100.0 3.8E-40 1.3E-44 284.7 33.0 279 2-325 95-382 (383)
75 2pm7_B Protein transport prote 100.0 3.8E-40 1.3E-44 273.9 31.3 270 61-395 3-285 (297)
76 3dm0_A Maltose-binding peripla 100.0 7.8E-40 2.7E-44 303.6 36.0 265 1-324 403-692 (694)
77 4gga_A P55CDC, cell division c 100.0 1.8E-39 6.2E-44 283.5 36.2 262 1-326 123-396 (420)
78 4aez_A CDC20, WD repeat-contai 100.0 2.9E-39 9.8E-44 280.6 36.6 264 2-327 112-382 (401)
79 1p22_A F-BOX/WD-repeat protein 100.0 1.5E-39 5.1E-44 285.4 33.4 287 21-402 132-421 (435)
80 3v7d_B Cell division control p 100.0 7.3E-39 2.5E-43 283.9 37.9 288 15-401 113-427 (464)
81 3jrp_A Fusion protein of prote 100.0 1.1E-39 3.8E-44 281.6 31.0 263 14-326 2-288 (379)
82 1sq9_A Antiviral protein SKI8; 100.0 2.3E-39 7.8E-44 281.4 32.8 289 1-326 34-396 (397)
83 3bg1_A Protein SEC13 homolog; 100.0 9.4E-40 3.2E-44 273.9 28.6 255 20-325 11-293 (316)
84 3bg1_A Protein SEC13 homolog; 100.0 1.6E-39 5.4E-44 272.5 27.7 274 61-395 7-293 (316)
85 3f3f_A Nucleoporin SEH1; struc 100.0 3.6E-39 1.2E-43 275.3 30.1 309 20-404 9-346 (351)
86 3i2n_A WD repeat-containing pr 100.0 1.2E-38 4.1E-43 272.9 32.5 272 2-326 43-354 (357)
87 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2.9E-38 1E-42 278.2 35.8 286 14-402 109-398 (445)
88 3zwl_B Eukaryotic translation 100.0 2.9E-38 9.8E-43 271.7 34.8 269 2-326 53-347 (369)
89 4e54_B DNA damage-binding prot 100.0 1.5E-39 5E-44 285.3 27.0 285 1-326 140-431 (435)
90 1k8k_C P40, ARP2/3 complex 41 100.0 1.4E-38 4.7E-43 274.1 31.8 268 2-326 29-362 (372)
91 4aow_A Guanine nucleotide-bind 100.0 7.8E-38 2.7E-42 266.0 35.7 265 1-326 59-338 (340)
92 4ggc_A P55CDC, cell division c 100.0 8.7E-38 3E-42 263.1 35.3 266 1-326 43-316 (318)
93 2j04_B YDR362CP, TAU91; beta p 100.0 3E-39 1E-43 286.0 25.2 280 12-396 123-429 (524)
94 3gre_A Serine/threonine-protei 100.0 2.3E-39 8E-44 284.8 24.2 287 1-322 84-437 (437)
95 4h5i_A Guanine nucleotide-exch 100.0 1.6E-38 5.3E-43 271.4 28.4 270 2-329 42-347 (365)
96 2aq5_A Coronin-1A; WD40 repeat 100.0 1.4E-38 4.7E-43 276.6 28.0 296 24-397 36-344 (402)
97 4a11_B DNA excision repair pro 100.0 1E-37 3.5E-42 272.0 32.1 311 1-396 64-406 (408)
98 2aq5_A Coronin-1A; WD40 repeat 100.0 4.3E-38 1.5E-42 273.4 28.2 271 2-326 56-343 (402)
99 3bws_A Protein LP49; two-domai 100.0 3.3E-36 1.1E-40 264.5 38.5 300 4-395 102-432 (433)
100 3vu4_A KMHSV2; beta-propeller 100.0 4.4E-37 1.5E-41 261.7 31.4 317 7-399 3-340 (355)
101 3jrp_A Fusion protein of prote 100.0 2.3E-37 7.8E-42 267.1 29.0 271 61-396 5-288 (379)
102 3odt_A Protein DOA1; ubiquitin 100.0 4.1E-36 1.4E-40 252.3 35.6 258 1-326 37-297 (313)
103 2vdu_B TRNA (guanine-N(7)-)-me 100.0 5.3E-36 1.8E-40 263.9 36.8 290 22-396 4-392 (450)
104 1l0q_A Surface layer protein; 100.0 2.8E-35 9.5E-40 255.1 39.4 318 2-398 11-345 (391)
105 3dwl_C Actin-related protein 2 100.0 5.7E-38 2E-42 270.6 22.4 215 2-232 32-268 (377)
106 2xyi_A Probable histone-bindin 100.0 6.5E-36 2.2E-40 261.6 34.0 311 21-396 44-411 (430)
107 3dw8_B Serine/threonine-protei 100.0 6.4E-36 2.2E-40 263.8 33.1 287 1-323 48-444 (447)
108 3jro_A Fusion protein of prote 100.0 6.4E-37 2.2E-41 285.5 28.0 257 20-326 7-286 (753)
109 2j04_A TAU60, YPL007P, hypothe 100.0 5.7E-37 2E-41 264.5 24.2 270 21-394 14-296 (588)
110 1p22_A F-BOX/WD-repeat protein 100.0 7E-36 2.4E-40 262.1 31.5 254 2-326 152-415 (435)
111 2xyi_A Probable histone-bindin 100.0 4.1E-36 1.4E-40 262.9 29.5 261 16-326 122-411 (430)
112 1yfq_A Cell cycle arrest prote 100.0 2.9E-35 9.9E-40 250.3 32.0 280 1-323 31-322 (342)
113 3jro_A Fusion protein of prote 100.0 1.3E-35 4.6E-40 276.6 28.6 272 61-397 3-287 (753)
114 4gq1_A NUP37; propeller, trans 100.0 4E-35 1.4E-39 253.2 29.4 284 2-324 39-388 (393)
115 4gq1_A NUP37; propeller, trans 100.0 3E-35 1E-39 254.1 27.0 266 73-394 95-388 (393)
116 3lrv_A PRE-mRNA-splicing facto 100.0 1.4E-35 4.9E-40 251.8 24.0 282 29-394 43-332 (343)
117 1l0q_A Surface layer protein; 100.0 1.1E-33 3.9E-38 245.0 35.6 274 35-403 2-283 (391)
118 3mmy_A MRNA export factor; mRN 100.0 1.8E-34 6.1E-39 248.0 28.7 276 1-325 62-346 (368)
119 3f3f_A Nucleoporin SEH1; struc 100.0 3.3E-34 1.1E-38 244.5 29.3 279 1-326 31-338 (351)
120 2j04_A TAU60, YPL007P, hypothe 100.0 1.8E-34 6.2E-39 249.0 27.3 288 2-384 36-350 (588)
121 2w18_A PALB2, fancn, partner a 100.0 2.7E-33 9.1E-38 227.1 31.8 272 2-393 62-355 (356)
122 1nir_A Nitrite reductase; hemo 100.0 2.7E-32 9.3E-37 243.5 38.5 331 2-403 158-522 (543)
123 2vdu_B TRNA (guanine-N(7)-)-me 100.0 3.2E-33 1.1E-37 246.2 32.1 270 24-326 104-392 (450)
124 3lrv_A PRE-mRNA-splicing facto 100.0 1.3E-33 4.5E-38 239.7 27.4 260 2-325 57-333 (343)
125 3vu4_A KMHSV2; beta-propeller 100.0 1.5E-32 5.2E-37 233.8 30.6 249 49-397 3-273 (355)
126 3bws_A Protein LP49; two-domai 100.0 3.8E-32 1.3E-36 238.7 30.5 273 2-325 143-432 (433)
127 1k32_A Tricorn protease; prote 100.0 6.1E-31 2.1E-35 254.2 36.4 352 3-397 33-463 (1045)
128 2hqs_A Protein TOLB; TOLB, PAL 100.0 1.1E-31 3.7E-36 233.0 27.9 275 4-358 94-407 (415)
129 1nir_A Nitrite reductase; hemo 100.0 1.9E-29 6.5E-34 225.2 29.1 294 29-404 144-468 (543)
130 2hqs_A Protein TOLB; TOLB, PAL 100.0 1.2E-29 4.2E-34 220.1 26.1 282 23-397 63-389 (415)
131 2ecf_A Dipeptidyl peptidase IV 100.0 2.3E-28 7.9E-33 229.0 33.2 320 22-395 36-459 (741)
132 2z3z_A Dipeptidyl aminopeptida 100.0 7.7E-29 2.6E-33 230.9 29.5 313 2-397 44-437 (706)
133 1k32_A Tricorn protease; prote 100.0 1.4E-28 4.8E-33 237.8 31.4 334 3-395 80-502 (1045)
134 1ri6_A Putative isomerase YBHE 100.0 1.2E-27 4.2E-32 203.3 32.9 275 2-325 14-308 (343)
135 3u4y_A Uncharacterized protein 100.0 2.1E-27 7.1E-32 200.8 32.1 284 28-397 3-306 (331)
136 1pby_B Quinohemoprotein amine 100.0 1.2E-27 4.2E-32 202.8 30.3 290 2-405 10-320 (337)
137 1ri6_A Putative isomerase YBHE 100.0 5.7E-27 2E-31 199.2 32.1 281 36-394 6-307 (343)
138 2w18_A PALB2, fancn, partner a 100.0 6.2E-28 2.1E-32 195.8 23.6 182 1-190 155-355 (356)
139 2ojh_A Uncharacterized protein 100.0 1.9E-27 6.4E-32 197.8 26.3 254 1-316 20-293 (297)
140 1xfd_A DIP, dipeptidyl aminope 100.0 1.8E-27 6.1E-32 222.5 27.6 314 23-365 17-426 (723)
141 3u4y_A Uncharacterized protein 100.0 1.8E-26 6.1E-31 195.1 30.8 268 2-326 19-305 (331)
142 3hfq_A Uncharacterized protein 100.0 2.7E-25 9.3E-30 189.0 34.0 282 2-325 15-317 (347)
143 2ojh_A Uncharacterized protein 100.0 9.4E-27 3.2E-31 193.6 24.1 258 40-386 17-293 (297)
144 3vgz_A Uncharacterized protein 100.0 3.6E-25 1.2E-29 188.8 34.4 287 17-385 35-334 (353)
145 2z3z_A Dipeptidyl aminopeptida 100.0 1.3E-25 4.3E-30 209.3 31.1 266 2-326 100-436 (706)
146 2ecf_A Dipeptidyl peptidase IV 99.9 6.7E-26 2.3E-30 212.4 27.3 299 4-325 65-459 (741)
147 3scy_A Hypothetical bacterial 99.9 1.8E-23 6.1E-28 178.8 37.5 297 2-357 26-360 (361)
148 3hfq_A Uncharacterized protein 99.9 5.1E-24 1.8E-28 181.2 33.6 277 44-397 15-321 (347)
149 1xfd_A DIP, dipeptidyl aminope 99.9 1.2E-25 4.2E-30 210.1 24.9 298 2-312 36-427 (723)
150 3vgz_A Uncharacterized protein 99.9 3.9E-24 1.3E-28 182.4 31.9 252 2-316 68-335 (353)
151 3o4h_A Acylamino-acid-releasin 99.9 2E-25 6.9E-30 203.1 23.8 271 21-395 20-315 (582)
152 1jmx_B Amine dehydrogenase; ox 99.9 1.6E-24 5.3E-29 184.6 26.0 305 27-404 4-334 (349)
153 1z68_A Fibroblast activation p 99.9 5.4E-25 1.9E-29 205.4 24.1 328 26-398 19-446 (719)
154 1jmx_B Amine dehydrogenase; ox 99.9 3E-23 1E-27 176.7 29.3 262 2-326 20-326 (349)
155 3scy_A Hypothetical bacterial 99.9 4E-22 1.4E-26 170.4 34.9 295 34-397 12-341 (361)
156 3pe7_A Oligogalacturonate lyas 99.9 2.9E-23 9.8E-28 179.5 26.6 299 7-396 14-383 (388)
157 2oit_A Nucleoporin 214KDA; NH2 99.9 2.7E-22 9.3E-27 174.5 27.9 197 22-230 36-255 (434)
158 2oiz_A Aromatic amine dehydrog 99.9 1.4E-22 4.9E-27 172.1 25.3 292 2-358 30-357 (361)
159 1jof_A Carboxy-CIS,CIS-muconat 99.9 5.9E-22 2E-26 169.3 29.0 280 3-326 14-342 (365)
160 1z68_A Fibroblast activation p 99.9 2.8E-23 9.5E-28 193.9 22.1 308 2-327 35-445 (719)
161 1jof_A Carboxy-CIS,CIS-muconat 99.9 2.5E-21 8.4E-26 165.5 29.7 284 37-396 4-342 (365)
162 2oit_A Nucleoporin 214KDA; NH2 99.9 2.7E-22 9.1E-27 174.5 21.3 211 119-397 38-280 (434)
163 3c5m_A Oligogalacturonate lyas 99.9 1.4E-21 4.6E-26 169.4 21.7 300 7-397 14-386 (396)
164 4a5s_A Dipeptidyl peptidase 4 99.9 5.5E-21 1.9E-25 178.4 27.0 301 23-359 17-426 (740)
165 3o4h_A Acylamino-acid-releasin 99.9 7.8E-22 2.7E-26 179.5 20.6 233 67-393 21-274 (582)
166 1pby_B Quinohemoprotein amine 99.9 1.9E-21 6.6E-26 164.6 21.2 226 2-293 55-322 (337)
167 1qks_A Cytochrome CD1 nitrite 99.9 1.6E-18 5.5E-23 154.4 39.7 334 2-404 176-547 (567)
168 2oiz_A Aromatic amine dehydrog 99.9 1.9E-19 6.4E-24 153.0 29.4 287 34-402 14-343 (361)
169 4a5s_A Dipeptidyl peptidase 4 99.9 1.5E-19 5E-24 168.8 27.1 312 2-326 35-450 (740)
170 3azo_A Aminopeptidase; POP fam 99.9 3.2E-19 1.1E-23 165.0 27.5 295 21-397 22-371 (662)
171 1q7f_A NHL, brain tumor CG1071 99.9 4.8E-18 1.6E-22 140.1 31.7 251 65-397 27-282 (286)
172 3pe7_A Oligogalacturonate lyas 99.9 6.1E-19 2.1E-23 152.3 26.7 272 4-325 61-382 (388)
173 1q7f_A NHL, brain tumor CG1071 99.9 4.1E-18 1.4E-22 140.6 30.2 245 21-326 28-281 (286)
174 3fvz_A Peptidyl-glycine alpha- 99.8 1.5E-18 5.1E-23 145.9 27.5 259 67-398 23-325 (329)
175 3fvz_A Peptidyl-glycine alpha- 99.8 3.5E-18 1.2E-22 143.6 29.0 262 22-326 23-323 (329)
176 2dg1_A DRP35, lactonase; beta 99.8 2.3E-18 7.9E-23 145.4 27.4 261 23-358 6-289 (333)
177 2xdw_A Prolyl endopeptidase; a 99.8 8.8E-18 3E-22 156.2 33.1 281 32-397 81-416 (710)
178 3azo_A Aminopeptidase; POP fam 99.8 1.1E-18 3.8E-23 161.4 24.4 267 2-326 46-370 (662)
179 3c5m_A Oligogalacturonate lyas 99.8 6.6E-19 2.3E-23 152.5 19.7 274 3-324 60-381 (396)
180 2gop_A Trilobed protease; beta 99.8 3.7E-17 1.3E-21 138.8 28.8 241 2-324 42-330 (347)
181 3dsm_A Uncharacterized protein 99.8 6.4E-17 2.2E-21 135.7 29.5 262 2-324 16-301 (328)
182 2z2n_A Virginiamycin B lyase; 99.8 1.3E-15 4.5E-20 126.4 37.1 285 21-397 13-297 (299)
183 3dsm_A Uncharacterized protein 99.8 6E-17 2.1E-21 135.8 28.5 272 43-404 15-310 (328)
184 2bkl_A Prolyl endopeptidase; m 99.8 9.2E-18 3.1E-22 155.6 24.8 281 31-397 76-399 (695)
185 2gop_A Trilobed protease; beta 99.8 1E-16 3.6E-21 136.0 28.7 259 22-394 14-330 (347)
186 2mad_H Methylamine dehydrogena 99.8 9.5E-16 3.3E-20 130.2 32.7 269 4-326 48-351 (373)
187 2dg1_A DRP35, lactonase; beta 99.8 7E-16 2.4E-20 130.1 31.1 259 2-315 26-300 (333)
188 3e5z_A Putative gluconolactona 99.8 3.5E-16 1.2E-20 129.6 28.7 242 20-325 25-286 (296)
189 3e5z_A Putative gluconolactona 99.8 4.4E-16 1.5E-20 129.0 29.0 242 62-397 22-288 (296)
190 2xdw_A Prolyl endopeptidase; a 99.8 2.7E-16 9.3E-21 146.2 30.3 249 23-327 125-416 (710)
191 1qks_A Cytochrome CD1 nitrite 99.8 6E-16 2E-20 137.9 30.8 284 34-396 166-478 (567)
192 3sjl_D Methylamine dehydrogena 99.8 1.9E-15 6.5E-20 126.3 29.7 273 2-326 58-364 (386)
193 2bkl_A Prolyl endopeptidase; m 99.8 1.7E-16 5.7E-21 147.2 23.9 262 6-326 97-398 (695)
194 3sjl_D Methylamine dehydrogena 99.8 4.7E-15 1.6E-19 124.0 30.0 297 28-406 38-374 (386)
195 1rwi_B Serine/threonine-protei 99.7 1.7E-15 5.7E-20 123.8 26.0 243 69-399 25-268 (270)
196 2mad_H Methylamine dehydrogena 99.7 3.4E-14 1.2E-18 120.6 34.3 292 29-404 27-360 (373)
197 1yr2_A Prolyl oligopeptidase; 99.7 2.3E-15 8E-20 140.5 28.5 280 31-397 115-443 (741)
198 3no2_A Uncharacterized protein 99.7 1.1E-14 3.8E-19 118.4 28.9 254 78-402 4-268 (276)
199 1rwi_B Serine/threonine-protei 99.7 2.5E-15 8.6E-20 122.7 24.4 240 24-326 25-265 (270)
200 2qc5_A Streptogramin B lactona 99.7 3.8E-14 1.3E-18 117.6 31.8 282 21-394 18-299 (300)
201 3no2_A Uncharacterized protein 99.7 2.1E-14 7.1E-19 116.8 28.7 183 2-197 14-200 (276)
202 3c75_H MADH, methylamine dehyd 99.7 9E-15 3.1E-19 124.6 27.5 270 3-326 99-403 (426)
203 3c75_H MADH, methylamine dehyd 99.7 6E-15 2.1E-19 125.7 26.1 287 34-402 83-409 (426)
204 1pjx_A Dfpase, DIISOPROPYLFLUO 99.7 1.1E-13 3.6E-18 115.7 31.5 247 67-395 17-299 (314)
205 2z2n_A Virginiamycin B lyase; 99.7 1.3E-12 4.3E-17 108.3 33.8 259 2-325 35-295 (299)
206 2qe8_A Uncharacterized protein 99.7 3.8E-14 1.3E-18 119.7 24.1 270 23-388 17-314 (343)
207 1pjx_A Dfpase, DIISOPROPYLFLUO 99.7 2.5E-13 8.6E-18 113.4 28.5 251 21-325 16-299 (314)
208 1yr2_A Prolyl oligopeptidase; 99.7 8.6E-14 2.9E-18 130.0 27.7 248 21-327 161-443 (741)
209 3hrp_A Uncharacterized protein 99.6 8E-13 2.7E-17 113.9 30.6 256 23-323 131-408 (409)
210 2qc5_A Streptogramin B lactona 99.6 4.9E-12 1.7E-16 104.8 32.3 257 2-323 40-298 (300)
211 3g4e_A Regucalcin; six bladed 99.6 2.7E-12 9.2E-17 106.0 30.0 237 21-314 11-261 (297)
212 1mda_H Methylamine dehydrogena 99.6 3.5E-14 1.2E-18 119.1 17.9 281 4-358 47-366 (368)
213 3dr2_A Exported gluconolactona 99.6 1.4E-12 4.8E-17 108.2 27.4 238 16-317 38-299 (305)
214 3hrp_A Uncharacterized protein 99.6 3.8E-12 1.3E-16 109.6 29.7 243 68-393 131-408 (409)
215 3iuj_A Prolyl endopeptidase; h 99.6 4.9E-13 1.7E-17 123.7 24.5 244 65-397 126-407 (693)
216 3g4e_A Regucalcin; six bladed 99.6 1.7E-11 5.7E-16 101.3 31.0 222 66-358 11-251 (297)
217 1mda_H Methylamine dehydrogena 99.5 3E-12 1E-16 107.4 23.6 264 90-405 47-356 (368)
218 1xip_A Nucleoporin NUP159; bet 99.5 7.6E-13 2.6E-17 111.2 19.2 184 24-235 39-233 (388)
219 3q7m_A Lipoprotein YFGL, BAMB; 99.5 7.2E-11 2.5E-15 101.1 32.0 296 2-392 62-375 (376)
220 2ghs_A AGR_C_1268P; regucalcin 99.5 2.3E-11 8E-16 101.7 28.0 230 24-313 50-290 (326)
221 3iuj_A Prolyl endopeptidase; h 99.5 2.2E-12 7.7E-17 119.3 23.3 246 21-327 127-407 (693)
222 2ece_A 462AA long hypothetical 99.5 9.3E-11 3.2E-15 98.8 30.4 275 5-313 45-399 (462)
223 1xip_A Nucleoporin NUP159; bet 99.5 2.2E-11 7.6E-16 102.4 25.7 152 4-178 59-230 (388)
224 2ghs_A AGR_C_1268P; regucalcin 99.5 6E-11 2.1E-15 99.2 28.5 214 70-358 51-281 (326)
225 1kb0_A Quinohemoprotein alcoho 99.5 1E-11 3.6E-16 113.8 25.6 308 2-326 86-508 (677)
226 3dr2_A Exported gluconolactona 99.5 2.8E-11 9.7E-16 100.3 25.6 236 62-390 39-302 (305)
227 2hz6_A Endoplasmic reticulum t 99.5 6.4E-15 2.2E-19 125.3 1.0 223 34-326 8-237 (369)
228 1kb0_A Quinohemoprotein alcoho 99.4 1E-10 3.5E-15 107.3 26.5 296 35-404 77-516 (677)
229 1yiq_A Quinohemoprotein alcoho 99.4 3.2E-10 1.1E-14 104.3 29.8 139 35-184 70-257 (689)
230 1yiq_A Quinohemoprotein alcoho 99.4 7.9E-11 2.7E-15 108.3 25.4 309 2-327 79-507 (689)
231 3hxj_A Pyrrolo-quinoline quino 99.4 3.6E-11 1.2E-15 101.0 19.1 288 2-398 39-327 (330)
232 3q7m_A Lipoprotein YFGL, BAMB; 99.4 3.3E-09 1.1E-13 90.8 30.8 280 35-403 53-345 (376)
233 2qe8_A Uncharacterized protein 99.3 3.6E-10 1.2E-14 95.3 20.3 245 68-397 17-280 (343)
234 2ece_A 462AA long hypothetical 99.3 1.7E-08 5.7E-13 85.3 29.8 202 77-325 93-352 (462)
235 2hz6_A Endoplasmic reticulum t 99.3 3.6E-12 1.2E-16 108.4 7.1 192 128-402 8-199 (369)
236 1fwx_A Nitrous oxide reductase 99.3 5E-10 1.7E-14 97.9 18.5 244 34-326 100-432 (595)
237 1kv9_A Type II quinohemoprotei 99.2 8.8E-09 3E-13 94.5 26.9 142 35-184 66-252 (668)
238 1fwx_A Nitrous oxide reductase 99.2 3.2E-09 1.1E-13 92.9 22.6 178 2-192 111-361 (595)
239 4a2l_A BT_4663, two-component 99.2 1.2E-06 4.1E-11 82.7 41.5 344 4-396 236-615 (795)
240 1kv9_A Type II quinohemoprotei 99.2 2.1E-08 7.2E-13 92.0 28.6 307 2-327 75-490 (668)
241 4a2l_A BT_4663, two-component 99.2 9.3E-07 3.2E-11 83.4 40.1 353 4-396 194-572 (795)
242 2fp8_A Strictosidine synthase; 99.2 2.8E-08 9.7E-13 82.9 26.7 247 23-326 19-314 (322)
243 1npe_A Nidogen, entactin; glyc 99.2 1.4E-07 5E-12 76.3 29.5 248 36-358 2-260 (267)
244 2iwa_A Glutamine cyclotransfer 99.2 2.2E-08 7.6E-13 79.4 23.4 168 13-195 9-184 (266)
245 2iwa_A Glutamine cyclotransfer 99.2 2.4E-08 8.2E-13 79.2 22.9 201 70-326 23-238 (266)
246 1npe_A Nidogen, entactin; glyc 99.2 1.7E-07 5.8E-12 75.9 28.7 243 3-307 10-263 (267)
247 1w6s_A Methanol dehydrogenase 99.1 1.1E-07 3.7E-12 85.5 28.6 311 2-327 72-505 (599)
248 3nol_A Glutamine cyclotransfer 99.1 4.6E-08 1.6E-12 76.5 22.2 166 14-196 32-205 (262)
249 3hxj_A Pyrrolo-quinoline quino 99.1 2.9E-09 1E-13 89.3 15.3 263 27-398 24-286 (330)
250 1k3i_A Galactose oxidase precu 99.1 4.7E-08 1.6E-12 89.9 24.4 118 27-151 190-326 (656)
251 2fp8_A Strictosidine synthase; 99.1 5.1E-08 1.7E-12 81.4 22.6 245 69-396 20-314 (322)
252 3nol_A Glutamine cyclotransfer 99.1 5.8E-08 2E-12 76.0 21.1 187 70-314 45-244 (262)
253 2ad6_A Methanol dehydrogenase 99.1 1.7E-07 5.8E-12 84.3 26.9 316 2-327 72-496 (571)
254 1flg_A Protein (quinoprotein e 99.1 7E-07 2.4E-11 80.4 30.6 192 4-198 79-361 (582)
255 2p4o_A Hypothetical protein; p 99.1 1E-06 3.5E-11 72.8 29.3 242 14-315 23-278 (306)
256 3v9f_A Two-component system se 99.1 7.1E-06 2.4E-10 77.3 38.6 346 4-395 231-611 (781)
257 1w6s_A Methanol dehydrogenase 99.1 5.2E-07 1.8E-11 81.1 29.0 115 36-156 63-199 (599)
258 2ad6_A Methanol dehydrogenase 99.1 6.8E-07 2.3E-11 80.4 29.7 113 36-156 63-193 (571)
259 3v9f_A Two-component system se 99.0 1.3E-05 4.6E-10 75.4 39.2 350 4-397 184-570 (781)
260 1flg_A Protein (quinoprotein e 99.0 2.9E-06 9.9E-11 76.4 31.9 118 34-155 68-200 (582)
261 3nok_A Glutaminyl cyclase; bet 99.0 1.1E-07 3.7E-12 74.4 19.1 165 14-196 44-214 (268)
262 3nok_A Glutaminyl cyclase; bet 99.0 1.5E-07 5.2E-12 73.6 18.5 167 2-181 74-254 (268)
263 2p4o_A Hypothetical protein; p 98.9 2.2E-06 7.4E-11 70.9 26.7 204 68-324 32-241 (306)
264 3mbr_X Glutamine cyclotransfer 98.9 6.8E-07 2.3E-11 69.4 21.8 188 68-313 21-222 (243)
265 3qqz_A Putative uncharacterize 98.9 2.4E-06 8.1E-11 67.4 24.0 169 22-192 26-204 (255)
266 3mbr_X Glutamine cyclotransfer 98.9 6.5E-07 2.2E-11 69.5 20.0 169 3-181 43-223 (243)
267 4hw6_A Hypothetical protein, I 98.9 9.3E-06 3.2E-10 70.3 28.4 156 24-191 140-303 (433)
268 3ei3_A DNA damage-binding prot 98.8 0.00011 3.8E-09 71.4 39.5 135 3-147 492-635 (1158)
269 1k3i_A Galactose oxidase precu 98.8 3.1E-07 1.1E-11 84.5 19.4 96 4-101 220-326 (656)
270 3v65_B Low-density lipoprotein 98.8 8.5E-06 2.9E-10 69.6 26.7 177 3-191 96-276 (386)
271 3v64_C Agrin; beta propeller, 98.8 2.2E-05 7.7E-10 65.9 28.5 177 3-191 53-233 (349)
272 1ijq_A LDL receptor, low-densi 98.8 4.2E-05 1.4E-09 63.3 28.8 177 3-191 10-194 (316)
273 3tc9_A Hypothetical hydrolase; 98.8 2.7E-05 9.2E-10 67.4 28.3 155 24-191 138-300 (430)
274 3p5b_L Low density lipoprotein 98.7 9.7E-05 3.3E-09 63.3 31.2 179 3-191 92-276 (400)
275 3kya_A Putative phosphatase; s 98.7 6.6E-05 2.2E-09 65.2 27.8 160 25-191 141-340 (496)
276 2xe4_A Oligopeptidase B; hydro 98.7 1.9E-05 6.5E-10 73.8 26.2 113 69-192 175-304 (751)
277 3v65_B Low-density lipoprotein 98.7 0.0001 3.4E-09 62.9 28.7 236 25-326 79-319 (386)
278 2xe4_A Oligopeptidase B; hydro 98.6 2.1E-05 7.1E-10 73.5 25.3 116 24-149 175-305 (751)
279 3v64_C Agrin; beta propeller, 98.6 0.00016 5.4E-09 60.8 30.8 240 21-326 32-276 (349)
280 3qqz_A Putative uncharacterize 98.6 0.00011 3.8E-09 57.9 27.3 216 61-323 20-251 (255)
281 3tc9_A Hypothetical hydrolase; 98.6 0.0001 3.4E-09 63.9 26.7 111 69-192 138-257 (430)
282 3sov_A LRP-6, low-density lipo 98.6 0.00015 5E-09 60.0 25.8 178 3-191 13-196 (318)
283 1ijq_A LDL receptor, low-densi 98.5 0.00023 8E-09 58.8 31.0 228 37-326 3-239 (316)
284 3s94_A LRP-6, low-density lipo 98.5 0.00055 1.9E-08 62.2 33.5 159 23-194 84-245 (619)
285 2xbg_A YCF48-like protein; pho 98.5 0.00028 9.7E-09 58.7 32.5 279 21-393 34-320 (327)
286 3p5b_L Low density lipoprotein 98.5 0.00053 1.8E-08 58.7 27.8 234 81-402 85-327 (400)
287 3m0c_C LDL receptor, low-densi 98.4 0.0013 4.3E-08 61.4 30.6 231 37-326 397-633 (791)
288 4hw6_A Hypothetical protein, I 98.4 0.00025 8.4E-09 61.4 24.4 156 119-325 140-304 (433)
289 3m0c_C LDL receptor, low-densi 98.4 0.00069 2.3E-08 63.1 27.5 179 4-192 405-589 (791)
290 2ism_A Putative oxidoreductase 98.3 0.0009 3.1E-08 56.2 25.7 106 68-179 31-152 (352)
291 3amr_A 3-phytase; beta-propell 98.3 0.00019 6.4E-09 58.9 20.0 178 3-191 50-262 (355)
292 2xzh_A Clathrin heavy chain 1; 98.3 0.0009 3.1E-08 53.9 29.3 269 4-326 50-333 (365)
293 1n7d_A LDL receptor, low-densi 98.3 5.7E-06 2E-10 76.2 11.2 176 3-191 386-570 (699)
294 3sov_A LRP-6, low-density lipo 98.3 0.0013 4.4E-08 54.3 30.0 230 37-327 6-240 (318)
295 4a0p_A LRP6, LRP-6, low-densit 98.2 0.0027 9.2E-08 57.8 38.1 177 3-194 59-239 (628)
296 3a9g_A Putative uncharacterize 98.2 0.0015 5.2E-08 54.8 26.8 233 68-313 29-330 (354)
297 3ei3_A DNA damage-binding prot 98.2 0.0067 2.3E-07 59.2 39.7 94 3-97 532-635 (1158)
298 1n7d_A LDL receptor, low-densi 98.2 1.8E-05 6E-10 73.0 12.2 226 44-326 385-615 (699)
299 3amr_A 3-phytase; beta-propell 98.2 0.0015 5E-08 53.7 21.8 208 129-404 40-273 (355)
300 2p9w_A MAL S 1 allergenic prot 98.2 0.00026 8.8E-09 57.6 17.3 166 25-191 15-214 (334)
301 2p9w_A MAL S 1 allergenic prot 98.1 0.0022 7.6E-08 52.2 21.6 143 2-148 34-215 (334)
302 3kya_A Putative phosphatase; s 98.1 0.0045 1.5E-07 53.9 29.6 114 70-191 141-277 (496)
303 2vpj_A Kelch-like protein 12; 98.0 0.0036 1.2E-07 51.3 23.0 148 34-193 14-185 (301)
304 3sre_A PON1, serum paraoxonase 98.0 0.0043 1.5E-07 51.6 22.8 159 24-192 51-252 (355)
305 1bpo_A Protein (clathrin); cla 98.0 0.005 1.7E-07 51.9 29.1 269 4-326 49-332 (494)
306 2xzh_A Clathrin heavy chain 1; 98.0 0.0038 1.3E-07 50.4 28.9 221 45-327 49-292 (365)
307 2ism_A Putative oxidoreductase 98.0 0.0059 2E-07 51.2 24.8 106 119-233 32-152 (352)
308 2xn4_A Kelch-like protein 2; s 98.0 0.0039 1.3E-07 51.1 21.5 148 34-193 15-183 (302)
309 2g8s_A Glucose/sorbosone dehyd 97.9 0.0071 2.4E-07 50.8 26.4 58 261-318 288-347 (353)
310 3s94_A LRP-6, low-density lipo 97.9 0.013 4.6E-07 53.2 39.7 341 3-396 106-511 (619)
311 3ii7_A Kelch-like protein 7; p 97.9 0.008 2.7E-07 49.3 22.1 147 35-193 12-179 (306)
312 3ii7_A Kelch-like protein 7; p 97.8 0.0077 2.6E-07 49.4 21.5 177 3-193 24-226 (306)
313 2vpj_A Kelch-like protein 12; 97.8 0.0098 3.3E-07 48.6 24.1 176 4-193 32-232 (301)
314 3sre_A PON1, serum paraoxonase 97.7 0.014 4.7E-07 48.6 23.3 213 69-322 51-295 (355)
315 1bpo_A Protein (clathrin); cla 97.7 0.016 5.4E-07 49.0 29.6 221 45-327 48-291 (494)
316 4a0p_A LRP6, LRP-6, low-densit 97.7 0.029 1E-06 51.0 40.5 349 4-399 147-553 (628)
317 3pbp_A Nucleoporin NUP82; beta 97.7 0.0063 2.1E-07 51.2 17.6 165 126-321 29-208 (452)
318 2g8s_A Glucose/sorbosone dehyd 97.7 0.02 6.8E-07 48.0 23.8 109 69-180 19-148 (353)
319 2xn4_A Kelch-like protein 2; s 97.6 0.018 6.3E-07 47.0 20.7 176 4-193 31-230 (302)
320 1zgk_A Kelch-like ECH-associat 97.6 0.021 7.2E-07 46.9 23.4 148 34-193 24-194 (308)
321 3pbp_A Nucleoporin NUP82; beta 97.5 0.0062 2.1E-07 51.2 16.1 140 2-144 40-208 (452)
322 1cru_A Protein (soluble quinop 97.5 0.047 1.6E-06 47.5 26.7 113 68-181 27-163 (454)
323 2xbg_A YCF48-like protein; pho 97.4 0.038 1.3E-06 45.8 29.2 188 118-322 36-231 (327)
324 1zgk_A Kelch-like ECH-associat 97.3 0.048 1.7E-06 44.7 23.4 176 4-193 40-241 (308)
325 4asc_A Kelch repeat and BTB do 97.3 0.052 1.8E-06 44.6 22.0 144 37-193 7-175 (315)
326 1xi4_A Clathrin heavy chain; a 97.3 0.032 1.1E-06 54.7 19.4 272 4-325 49-331 (1630)
327 1tl2_A L10, protein (tachylect 97.2 0.0036 1.2E-07 47.4 10.1 150 23-185 41-203 (236)
328 2be1_A Serine/threonine-protei 97.2 0.056 1.9E-06 44.6 18.0 118 35-158 10-140 (339)
329 1cru_A Protein (soluble quinop 97.2 0.068 2.3E-06 46.5 19.0 112 22-136 26-162 (454)
330 1xi4_A Clathrin heavy chain; a 97.1 0.1 3.4E-06 51.4 20.8 244 89-405 48-299 (1630)
331 3a9g_A Putative uncharacterize 97.1 0.098 3.4E-06 43.8 26.2 109 22-136 28-153 (354)
332 3s25_A Hypothetical 7-bladed b 97.0 0.11 3.9E-06 42.2 21.7 95 76-190 22-134 (302)
333 2uvk_A YJHT; unknown function, 96.9 0.11 3.7E-06 43.6 17.9 54 34-88 65-128 (357)
334 4asc_A Kelch repeat and BTB do 96.9 0.14 4.7E-06 42.1 23.3 176 4-193 14-222 (315)
335 3sbq_A Nitrous-oxide reductase 96.9 0.21 7E-06 43.9 19.8 289 82-396 73-409 (638)
336 3das_A Putative oxidoreductase 96.9 0.15 5.2E-06 42.2 30.1 116 63-181 27-159 (347)
337 3das_A Putative oxidoreductase 96.7 0.22 7.5E-06 41.3 28.8 113 21-136 30-158 (347)
338 2be1_A Serine/threonine-protei 96.6 0.0046 1.6E-07 50.9 7.0 158 129-322 10-181 (339)
339 2zwa_A Leucine carboxyl methyl 96.6 0.47 1.6E-05 43.9 21.0 154 34-194 397-579 (695)
340 2woz_A Kelch repeat and BTB do 96.5 0.26 8.8E-06 40.5 22.7 95 90-193 25-137 (318)
341 2woz_A Kelch repeat and BTB do 96.4 0.31 1E-05 40.0 24.4 177 4-193 25-232 (318)
342 3ott_A Two-component system se 96.2 0.87 3E-05 42.7 41.2 348 5-397 123-504 (758)
343 1tl2_A L10, protein (tachylect 96.1 0.31 1E-05 37.1 17.8 62 254-319 91-157 (236)
344 2zwa_A Leucine carboxyl methyl 96.0 0.82 2.8E-05 42.3 19.0 184 4-193 413-636 (695)
345 2uvk_A YJHT; unknown function, 95.3 1 3.6E-05 37.5 22.4 67 34-102 19-99 (357)
346 3s25_A Hypothetical 7-bladed b 95.3 0.92 3.2E-05 36.9 25.3 137 28-191 58-215 (302)
347 3q6k_A 43.2 kDa salivary prote 95.2 1.2 4E-05 37.4 17.4 141 4-148 124-306 (381)
348 3sbq_A Nitrous-oxide reductase 94.9 1.9 6.4E-05 38.1 25.6 78 249-326 321-409 (638)
349 3uc1_A DNA gyrase subunit A; D 94.1 2 6.9E-05 35.3 20.2 251 35-325 3-279 (327)
350 3ott_A Two-component system se 94.0 4 0.00014 38.3 39.5 299 5-326 84-402 (758)
351 2wg3_C Hedgehog-interacting pr 93.7 3.3 0.00011 36.0 24.0 29 119-147 15-44 (463)
352 2wg3_C Hedgehog-interacting pr 93.5 3.4 0.00012 35.9 24.3 113 69-181 15-158 (463)
353 3q6k_A 43.2 kDa salivary prote 92.0 4.9 0.00017 33.8 21.9 127 24-155 27-197 (381)
354 4gq2_M Nucleoporin NUP120; bet 91.4 11 0.00037 36.5 21.7 38 252-289 237-274 (950)
355 3b7f_A Glycosyl hydrolase, BNR 90.1 7.8 0.00027 32.8 27.7 107 35-144 22-143 (394)
356 1zi0_A DNA gyrase subunit A; b 89.9 7 0.00024 31.8 24.9 155 34-191 2-175 (307)
357 4gq2_M Nucleoporin NUP120; bet 84.7 30 0.001 33.5 15.0 39 69-107 237-275 (950)
358 3uc1_A DNA gyrase subunit A; D 83.7 17 0.00058 29.8 19.8 167 22-191 94-278 (327)
359 3b7f_A Glycosyl hydrolase, BNR 83.7 19 0.00065 30.4 15.7 159 22-183 54-254 (394)
360 1suu_A DNA gyrase subunit A; t 82.6 18 0.00062 29.4 24.5 205 77-325 6-231 (312)
361 3l6v_A GYRA, DNA gyrase subuni 82.5 21 0.00071 29.9 22.5 109 76-191 4-131 (370)
362 3kci_A Probable E3 ubiquitin-p 80.4 25 0.00087 29.6 28.6 109 78-191 61-186 (389)
363 4fhn_B Nucleoporin NUP120; pro 79.4 52 0.0018 32.6 16.9 38 252-289 239-276 (1139)
364 1zi0_A DNA gyrase subunit A; b 79.3 24 0.00081 28.6 25.2 115 77-191 1-127 (307)
365 3no0_A DNA gyrase subunit A; D 79.1 22 0.00077 28.2 18.2 163 22-191 67-245 (276)
366 4fhn_B Nucleoporin NUP120; pro 77.2 6.8 0.00023 38.8 7.9 38 119-156 239-276 (1139)
367 3kci_A Probable E3 ubiquitin-p 76.8 33 0.0011 28.9 27.4 161 24-191 54-240 (389)
368 1wp5_A Topoisomerase IV; broke 76.4 30 0.001 28.3 24.7 154 34-191 4-173 (323)
369 3zwu_A Alkaline phosphatase PH 75.9 13 0.00046 33.4 8.7 60 252-312 477-548 (592)
370 1sqj_A OXG-RCBH, oligoxylogluc 75.7 54 0.0019 30.9 16.7 156 22-182 14-190 (789)
371 1suu_A DNA gyrase subunit A; t 74.6 33 0.0011 27.9 26.9 155 34-191 7-180 (312)
372 3no0_A DNA gyrase subunit A; D 70.8 38 0.0013 26.9 20.7 113 68-191 24-145 (276)
373 4a9v_A PHOX; hydrolase, beta-p 70.8 22 0.00076 31.7 8.6 61 251-312 476-548 (592)
374 1wp5_A Topoisomerase IV; broke 70.0 44 0.0015 27.3 24.7 110 77-191 3-124 (323)
375 3f7f_A Nucleoporin NUP120; nuc 68.6 27 0.00092 32.2 8.9 71 25-100 224-307 (729)
376 3zwu_A Alkaline phosphatase PH 63.5 22 0.00075 32.0 7.3 60 119-179 477-548 (592)
377 4a9v_A PHOX; hydrolase, beta-p 60.4 39 0.0013 30.2 8.1 62 118-180 476-549 (592)
378 4hvt_A Ritya.17583.B, post-pro 56.9 1.2E+02 0.0043 28.1 22.5 34 120-153 131-170 (711)
379 3l6v_A GYRA, DNA gyrase subuni 53.1 1E+02 0.0034 25.8 27.6 158 30-191 3-179 (370)
380 4hvt_A Ritya.17583.B, post-pro 50.7 1.6E+02 0.0054 27.4 21.8 245 69-324 130-429 (711)
381 3al9_A Plexin-A2; beta-propell 49.0 68 0.0023 28.5 8.0 69 252-320 401-476 (539)
382 4gz8_A Semaphorin-3A; multi-do 43.6 88 0.003 28.7 7.9 57 264-320 431-495 (667)
383 1q47_A Semaphorin 3A; beta pro 43.1 80 0.0027 27.7 7.4 57 264-320 423-487 (495)
384 2cn3_A Xyloglucanase, beta-1,4 40.6 2.3E+02 0.0079 26.4 16.0 111 24-137 24-152 (737)
385 4h3o_A Lectin; cadmium, plant 40.4 73 0.0025 20.6 11.4 25 299-325 54-78 (105)
386 3qhy_B Beta-lactamase inhibito 38.4 1.5E+02 0.005 23.5 21.8 104 69-191 25-128 (282)
387 3nvq_A Semaphorin-7A; beta-pro 34.8 1.5E+02 0.0051 26.7 7.8 58 263-320 381-444 (590)
388 3qhy_B Beta-lactamase inhibito 34.7 1.7E+02 0.0058 23.2 22.0 145 22-191 23-167 (282)
389 1q47_A Semaphorin 3A; beta pro 30.5 1.9E+02 0.0064 25.4 7.7 70 24-93 405-487 (495)
390 1sqj_A OXG-RCBH, oligoxylogluc 29.6 3.6E+02 0.012 25.4 24.6 62 118-180 15-83 (789)
391 3a0f_A Xyloglucanase; beta-pro 28.3 3.8E+02 0.013 25.1 18.0 65 21-85 19-93 (763)
392 3nvq_A Semaphorin-7A; beta-pro 27.9 2.4E+02 0.0083 25.4 8.0 58 36-93 381-444 (590)
393 1zvt_A Topoisomerase IV subuni 27.8 2.2E+02 0.0074 22.2 16.3 150 36-191 3-162 (256)
394 1zvt_A Topoisomerase IV subuni 24.4 2.5E+02 0.0086 21.8 15.2 103 81-191 4-113 (256)
395 3oky_A Plexin-A2; transmembran 23.6 2.5E+02 0.0085 25.9 7.4 58 263-320 413-475 (681)
396 1olz_A Semaphorin 4D; developm 23.4 4.4E+02 0.015 24.3 9.1 58 81-143 417-477 (663)
397 1b44_D ETB-POL, protein (B-POL 23.1 25 0.00084 22.1 0.7 21 388-408 85-105 (129)
398 1olz_A Semaphorin 4D; developm 23.1 3.7E+02 0.013 24.7 8.5 57 264-320 417-477 (663)
399 3ol2_B Plexin-B1; beta-propell 22.3 2.3E+02 0.0078 25.2 6.7 57 264-321 402-462 (528)
400 4gz8_A Semaphorin-3A; multi-do 21.8 3.1E+02 0.011 25.2 7.7 57 131-187 431-495 (667)
401 3al9_A Plexin-A2; beta-propell 21.4 1.9E+02 0.0063 25.8 6.1 57 131-187 415-476 (539)
402 3mvd_K Regulator of chromosome 21.1 3.8E+02 0.013 22.6 29.0 113 23-148 75-207 (423)
403 1xks_A Nuclear pore complex pr 21.1 4.1E+02 0.014 23.0 21.0 114 73-191 43-171 (450)
404 3mez_A Mannose-specific lectin 20.7 1.8E+02 0.0063 18.9 7.0 13 72-84 53-65 (111)
No 1
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=7.2e-53 Score=384.67 Aligned_cols=357 Identities=16% Similarity=0.234 Sum_probs=273.4
Q ss_pred CceEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeee------------------
Q psy988 2 DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNE------------------ 62 (408)
Q Consensus 2 Dg~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~------------------ 62 (408)
+++|+|||+.+++....+. |.+.|++++|+| ++++||+|+.||+|+|||+.+++......
T Consensus 38 ~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~sp-dg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~ 116 (611)
T 1nr0_A 38 GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSP-SGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESK 116 (611)
T ss_dssp TTEEEEEETTCSSCCEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSC
T ss_pred CCEEEEecCCCcccCeEecCCCCceEEEEECC-CCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCC
Confidence 4689999999888888886 999999999999 99999999999999999986543222122
Q ss_pred --------------------------ecCCceeeEEEEEecCCC-EEEEEecCCEEEEEeccCCeeeEEEEEeecccccc
Q psy988 63 --------------------------VEGQTKLITAANFCENGK-FAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNA 115 (408)
Q Consensus 63 --------------------------~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 115 (408)
+.+|...|.+++|+|++. .|++++.|++|++||..+.+.... ..+
T Consensus 117 ~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~--------l~~ 188 (611)
T 1nr0_A 117 RIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKST--------FGE 188 (611)
T ss_dssp EEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEE--------ECC
T ss_pred EEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeee--------ecc
Confidence 345566666777777665 477888888888888776543322 235
Q ss_pred CCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeec-------CccccccceEEEEecCCCEEEEeecCceEEEe
Q psy988 116 TGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYK-------GYVNVSSQIKASFSHDGKYIVSGSENQCIYIW 188 (408)
Q Consensus 116 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~ 188 (408)
|...|.+++|+|++++|++++.|+.|++||+.+++....+. +|. ..+.+++|+|++++|++++.|++|++|
T Consensus 189 H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~--~~V~~v~~spdg~~l~s~s~D~~v~lW 266 (611)
T 1nr0_A 189 HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHS--GSVFGLTWSPDGTKIASASADKTIKIW 266 (611)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSS--SCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccC--CCEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 67899999999999999999999999999999988777663 343 458899999999999999999999999
Q ss_pred eeccceeeeeeccc-------------------------------CCCccccccccccceEEEEEEeCCcceeeeecCCC
Q psy988 189 KTHHDYAKFSSVRR-------------------------------DRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPD 237 (408)
Q Consensus 189 d~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 237 (408)
|++++......... ........+.+|...|.+++|+|+++++++...+.
T Consensus 267 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~ 346 (611)
T 1nr0_A 267 NVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEG 346 (611)
T ss_dssp ETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred eCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCC
Confidence 99876543221100 01123345568999999999999999988754322
Q ss_pred C-------CCCc-------------------------------eeeec--------------------------------
Q psy988 238 K-------SEST-------------------------------GYVLN-------------------------------- 247 (408)
Q Consensus 238 ~-------~~~~-------------------------------~~~~~-------------------------------- 247 (408)
. .... ..++.
T Consensus 347 ~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~ 426 (611)
T 1nr0_A 347 HINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIA 426 (611)
T ss_dssp CEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCE
T ss_pred cEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEE
Confidence 1 0000 00000
Q ss_pred -------------------CCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeE-EeeccceeceeEEEEcCCCC
Q psy988 248 -------------------ATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCK-YKGYVNVSSQIKASFSHDGK 307 (408)
Q Consensus 248 -------------------~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~ 307 (408)
.+...+.+++|+|++++|++|+.|++|++||+.+++.... ..+| ...|.+++|+|||+
T Consensus 427 ~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h--~~~v~~v~fspdg~ 504 (611)
T 1nr0_A 427 VAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVH--PAEITSVAFSNNGA 504 (611)
T ss_dssp EEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEEC--SSCEEEEEECTTSS
T ss_pred EEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCC--CCceEEEEECCCCC
Confidence 0224467899999999999999999999999987654321 1344 44899999999999
Q ss_pred EEEEecCCceEEEeeccccCccccccccCccccce--eeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecC
Q psy988 308 YIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWE--GIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFN 385 (408)
Q Consensus 308 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d 385 (408)
+|++++.|+.|++|++.+.. +++. .+.+|...|.+++|+| ||++||+|+.|
T Consensus 505 ~las~s~d~~v~~w~~~~~~-----------~~~~~~~~~~H~~~V~~v~fsp----------------dg~~lasgs~D 557 (611)
T 1nr0_A 505 FLVATDQSRKVIPYSVANNF-----------ELAHTNSWTFHTAKVACVSWSP----------------DNVRLATGSLD 557 (611)
T ss_dssp EEEEEETTSCEEEEEGGGTT-----------EESCCCCCCCCSSCEEEEEECT----------------TSSEEEEEETT
T ss_pred EEEEEcCCCCEEEEEcCCCC-----------ceeeeeeeeecccceeEEEECC----------------CCCEEEEEECC
Confidence 99999999999999998621 2222 2345999999999999 99999999999
Q ss_pred CeEEEEeCCCCCC
Q psy988 386 GVIRVFLNKTKPK 398 (408)
Q Consensus 386 g~v~iw~~~~~~~ 398 (408)
++|++|++.++..
T Consensus 558 ~~v~lW~~~~~~~ 570 (611)
T 1nr0_A 558 NSVIVWNMNKPSD 570 (611)
T ss_dssp SCEEEEETTCTTS
T ss_pred CcEEEEECCCccc
Confidence 9999999987653
No 2
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=9.7e-53 Score=365.40 Aligned_cols=306 Identities=20% Similarity=0.304 Sum_probs=261.6
Q ss_pred EEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccC
Q psy988 19 FQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQ 98 (408)
Q Consensus 19 ~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 98 (408)
.+|.++|++++|+| ++.+|++|+.||+|++||+.+++.. ..+.+|...|.+++|+|++++|++|+.|++|++||+.+
T Consensus 105 ~gh~~~V~~~~~~p-~~~~l~s~s~Dg~i~vwd~~~~~~~--~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~ 181 (410)
T 1vyh_C 105 SGHRSPVTRVIFHP-VFSVMVSASEDATIKVWDYETGDFE--RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG 181 (410)
T ss_dssp ECCSSCEEEEEECS-SSSEEEEEESSSCEEEEETTTCCCC--EEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS
T ss_pred cccCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEE--EEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Confidence 34999999999999 9999999999999999999998876 68999999999999999999999999999999999988
Q ss_pred CeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEE
Q psy988 99 LKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVS 178 (408)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 178 (408)
.+.... ..+|...|.+++|+|++++|++++.|+.|++||++++.++..+.+|... +.++.++|++++|++
T Consensus 182 ~~~~~~--------~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~--v~~~~~~~~g~~l~s 251 (410)
T 1vyh_C 182 FECIRT--------MHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREW--VRMVRPNQDGTLIAS 251 (410)
T ss_dssp SCEEEC--------CCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSC--EEEEEECTTSSEEEE
T ss_pred CceeEE--------EcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCcc--EEEEEECCCCCEEEE
Confidence 654322 2356679999999999999999999999999999999988888877654 778999999999999
Q ss_pred eecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeecc
Q psy988 179 GSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEP 258 (408)
Q Consensus 179 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 258 (408)
++.|+.|++||+.++. ....+..|...|.+++|+|++.+........ ......
T Consensus 252 ~s~D~~v~vwd~~~~~------------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~---------------~~~~~~ 304 (410)
T 1vyh_C 252 CSNDQTVRVWVVATKE------------CKAELREHRHVVECISWAPESSYSSISEATG---------------SETKKS 304 (410)
T ss_dssp EETTSCEEEEETTTCC------------EEEEECCCSSCEEEEEECCSCGGGGGGGCCS---------------CC----
T ss_pred EcCCCeEEEEECCCCc------------eeeEecCCCceEEEEEEcCcccccchhhhcc---------------cccccc
Confidence 9999999999997643 3345678889999999999876542211100 011122
Q ss_pred CCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCcc
Q psy988 259 MPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRN 338 (408)
Q Consensus 259 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 338 (408)
.+.+.+|++|+.|+.|++||+++++++..+.+|.. .|.+++|+|+|++|++|+.||.|++||+.++
T Consensus 305 ~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~--~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~------------ 370 (410)
T 1vyh_C 305 GKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN--WVRGVLFHSGGKFILSCADDKTLRVWDYKNK------------ 370 (410)
T ss_dssp ---CCEEEEEETTSEEEEEETTTTEEEEEEECCSS--CEEEEEECSSSSCEEEEETTTEEEEECCTTS------------
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCC--cEEEEEEcCCCCEEEEEeCCCeEEEEECCCC------------
Confidence 34578999999999999999999999999988765 7899999999999999999999999999876
Q ss_pred ccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCC
Q psy988 339 DFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNK 394 (408)
Q Consensus 339 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~ 394 (408)
+++..+.+|...|++++|+| ++.+|++|+.||+|++|+++
T Consensus 371 ~~~~~~~~h~~~v~~l~~~~----------------~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 371 RCMKTLNAHEHFVTSLDFHK----------------TAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp CCCEEEECCSSCEEEEEECS----------------SSSCEEEEETTSEEEEEC--
T ss_pred ceEEEEcCCCCcEEEEEEcC----------------CCCEEEEEeCCCcEEEEeCC
Confidence 56778899999999999999 89999999999999999863
No 3
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=8.8e-52 Score=347.15 Aligned_cols=287 Identities=17% Similarity=0.277 Sum_probs=247.2
Q ss_pred eCCceEEEEEcCC---CCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEecc
Q psy988 21 HIDFVTAICFHPR---DDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTD 97 (408)
Q Consensus 21 h~~~v~~~~~sp~---~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~ 97 (408)
|.+.|++++|+|. ++.+|+||+.|++|++|++..+.......+.+|...|.+++|++++.++++++.|++|++||+.
T Consensus 31 H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~ 110 (321)
T 3ow8_A 31 HDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLE 110 (321)
T ss_dssp SSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred CCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence 9999999999982 3679999999999999999887765556789999999999999999999999999999999999
Q ss_pred CCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEE
Q psy988 98 QLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIV 177 (408)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 177 (408)
+++....+. .+...+.+++|+|++++|++++.+|.|++||+++++....+..+.. .+.+++|+|++++|+
T Consensus 111 ~~~~~~~~~--------~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~--~v~~~~~spdg~~la 180 (321)
T 3ow8_A 111 NGKQIKSID--------AGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGK--FILSIAYSPDGKYLA 180 (321)
T ss_dssp TTEEEEEEE--------CCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSS--CEEEEEECTTSSEEE
T ss_pred CCCEEEEEe--------CCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCc--eEEEEEECCCCCEEE
Confidence 887655443 2345788999999999999999999999999999888777766544 478899999999999
Q ss_pred EeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeec
Q psy988 178 SGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIE 257 (408)
Q Consensus 178 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 257 (408)
+++.||.|++||++++.. +..+. .|...|.+++
T Consensus 181 sg~~dg~i~iwd~~~~~~------------~~~~~-----------------------------------~h~~~v~~l~ 213 (321)
T 3ow8_A 181 SGAIDGIINIFDIATGKL------------LHTLE-----------------------------------GHAMPIRSLT 213 (321)
T ss_dssp EEETTSCEEEEETTTTEE------------EEEEC-----------------------------------CCSSCCCEEE
T ss_pred EEcCCCeEEEEECCCCcE------------EEEEc-----------------------------------ccCCceeEEE
Confidence 999999999999875422 12222 3445566666
Q ss_pred cCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCc
Q psy988 258 PMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDR 337 (408)
Q Consensus 258 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 337 (408)
|+|++++|++++.|+.|++||+++++....+.+|.. .|.+++|+|++++|++++.|+.|++||+.++
T Consensus 214 ~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~--~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~----------- 280 (321)
T 3ow8_A 214 FSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHAS--WVLNVAFCPDDTHFVSSSSDKSVKVWDVGTR----------- 280 (321)
T ss_dssp ECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSEEEEEETTSCEEEEETTTT-----------
T ss_pred EcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCC--ceEEEEECCCCCEEEEEeCCCcEEEEeCCCC-----------
Confidence 777778889999999999999999999988888765 7899999999999999999999999999886
Q ss_pred cccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCC
Q psy988 338 NDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNK 394 (408)
Q Consensus 338 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~ 394 (408)
+++..+.+|...|.+++|+| ++++|++++.||.|++||.+
T Consensus 281 -~~~~~~~~h~~~v~~v~~s~----------------~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 281 -TCVHTFFDHQDQVWGVKYNG----------------NGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp -EEEEEECCCSSCEEEEEECT----------------TSSEEEEEETTCCEEEEECC
T ss_pred -EEEEEEcCCCCcEEEEEECC----------------CCCEEEEEeCCCeEEEEeCC
Confidence 67778889999999999999 99999999999999999974
No 4
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1e-51 Score=377.05 Aligned_cols=358 Identities=15% Similarity=0.181 Sum_probs=280.6
Q ss_pred CCceEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeec-------CCceeeEE
Q psy988 1 MDKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVE-------GQTKLITA 72 (408)
Q Consensus 1 ~Dg~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~-------~~~~~v~~ 72 (408)
.|++|++||..+++++..+. |.+.|++++|+| ++++|++|+.|++|++||+.+++.. ..+. +|...|.+
T Consensus 168 ~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fsp-dg~~las~s~D~~i~lwd~~~g~~~--~~~~~~~~~~~~h~~~V~~ 244 (611)
T 1nr0_A 168 DDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNP-DGSLFASTGGDGTIVLYNGVDGTKT--GVFEDDSLKNVAHSGSVFG 244 (611)
T ss_dssp TTSCEEEEETTTBEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEE--EECBCTTSSSCSSSSCEEE
T ss_pred CCCeEEEEECCCCeEeeeeccccCceEEEEECC-CCCEEEEEECCCcEEEEECCCCcEe--eeeccccccccccCCCEEE
Confidence 38999999999999988887 999999999999 9999999999999999999888765 3442 79999999
Q ss_pred EEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEe-----------------------------------eccccccCC
Q psy988 73 ANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVR-----------------------------------STRGKNATG 117 (408)
Q Consensus 73 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~ 117 (408)
++|+|+|++|++++.|++|++||+.+++....+... ......+|.
T Consensus 245 v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~ 324 (611)
T 1nr0_A 245 LTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHN 324 (611)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCS
T ss_pred EEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCC
Confidence 999999999999999999999999987765443211 001124677
Q ss_pred CCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceee-cCccccccceEEEEecCCCEEEEeecCceEEEeeeccceee
Q psy988 118 RKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKY-KGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAK 196 (408)
Q Consensus 118 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 196 (408)
..|.+++|+|++++|++++.|+.|++||+.+++....+ ..| ...+.+++|++++ .+++++.|+.+++|+.......
T Consensus 325 ~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h--~~~v~~~~~s~~~-~l~s~s~d~~v~~w~~~~~~~~ 401 (611)
T 1nr0_A 325 KAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVH--ATMITGIKTTSKG-DLFTVSWDDHLKVVPAGGSGVD 401 (611)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSC--SSCEEEEEECTTS-CEEEEETTTEEEEECSSSSSSC
T ss_pred CCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCC--cceEEEEEECCCC-cEEEEEcCCceEEeecCCcccc
Confidence 89999999999999999999999999999988766554 233 3457889999766 6889999999999997653211
Q ss_pred ee--------------ecccCC---------------CccccccccccceEEEEEEeCCcceeeeecCCCCC-------C
Q psy988 197 FS--------------SVRRDR---------------NDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKS-------E 240 (408)
Q Consensus 197 ~~--------------~~~~~~---------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-------~ 240 (408)
.. ....+. ...+..+ .+...+.+++|+|++++++++..+... .
T Consensus 402 ~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~-~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~ 480 (611)
T 1nr0_A 402 SSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEV-PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGA 480 (611)
T ss_dssp TTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEE-ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETT
T ss_pred ccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeee-ecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCC
Confidence 00 000000 0001111 245678899999999999887655321 1
Q ss_pred Cc-eeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCC-CeeeeE--EeeccceeceeEEEEcCCCCEEEEecCCc
Q psy988 241 ST-GYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRD-LNLSCK--YKGYVNVSSQIKASFSHDGKYIVSGSENQ 316 (408)
Q Consensus 241 ~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 316 (408)
.. ......|...|.+++|+|++++|++++.|++|++||+.+ +++... +..|. ..|.+++|+|||++||+|+.|+
T Consensus 481 ~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~--~~V~~v~fspdg~~lasgs~D~ 558 (611)
T 1nr0_A 481 SVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHT--AKVACVSWSPDNVRLATGSLDN 558 (611)
T ss_dssp EEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCS--SCEEEEEECTTSSEEEEEETTS
T ss_pred ceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecc--cceeEEEECCCCCEEEEEECCC
Confidence 10 111246888999999999999999999999999999987 555443 22244 4899999999999999999999
Q ss_pred eEEEeeccccCccccccccCccccceeeeee-ccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCC
Q psy988 317 CIYIWKTHHDYAKFSSVRRDRNDFWEGIKAH-NAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNK 394 (408)
Q Consensus 317 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~ 394 (408)
+|++|++..+.. ..+..+.+| ...|.+++|+| +++ |++++.||+|++|+++
T Consensus 559 ~v~lW~~~~~~~----------~~~~~~~~h~~~~v~~v~fs~----------------d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 559 SVIVWNMNKPSD----------HPIIIKGAHAMSSVNSVIWLN----------------ETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp CEEEEETTCTTS----------CCEEETTSSTTSCEEEEEEEE----------------TTE-EEEEETTSCEEEEECC
T ss_pred cEEEEECCCccc----------ccchhhccCcccCeeEEEEcC----------------CCE-EEEecCCCCEEEEecc
Confidence 999999987521 112456689 89999999999 888 9999999999999974
No 5
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=9.7e-51 Score=370.09 Aligned_cols=329 Identities=22% Similarity=0.393 Sum_probs=283.0
Q ss_pred CceEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCC
Q psy988 2 DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGK 80 (408)
Q Consensus 2 Dg~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 80 (408)
|+.|++||.. ++.+..+. |...|.+++|+| ++++|++++.|+.|++|+... +.. ..+.+|...|.+++|+|+++
T Consensus 242 d~~i~~w~~~-~~~~~~~~~~~~~v~~v~~~~-d~~~l~~~~~d~~i~~w~~~~-~~~--~~~~~h~~~v~~~~~~~~~~ 316 (577)
T 2ymu_A 242 DKTVKLWNRN-GQLLQTLTGHSSSVNGVAFRP-DGQTIASASDDKTVKLWNRNG-QLL--QTLTGHSSSVWGVAFSPDGQ 316 (577)
T ss_dssp TSCEEEECTT-SCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTS-CEE--EEECCCSSCEEEEEECTTSS
T ss_pred CCEEEEEeCC-CCEEEEEecCCCCEEEEEEcC-CCCEEEEEeCCCEEEEEeCCC-cEE--EEEecCCCCeEEEEECCCCC
Confidence 7899999975 55566665 999999999999 999999999999999999754 333 57889999999999999999
Q ss_pred EEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccc
Q psy988 81 FAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVN 160 (408)
Q Consensus 81 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 160 (408)
+|++++.|+.|++||........ ...|...+.+++|+|+++.+++++.|+.|++||. +++.+..+..|..
T Consensus 317 ~l~t~~~d~~i~~w~~~~~~~~~---------~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~ 386 (577)
T 2ymu_A 317 TIASASDDKTVKLWNRNGQHLQT---------LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSS 386 (577)
T ss_dssp EEEEEETTSCEEEEETTSCEEEE---------ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSS
T ss_pred EEEEEeCCCeEEEEeCCCCeeEE---------EeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCC
Confidence 99999999999999987654211 1245678999999999999999999999999996 4666777776654
Q ss_pred cccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCC--
Q psy988 161 VSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDK-- 238 (408)
Q Consensus 161 ~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-- 238 (408)
.+.+++|+|++++|++++.|+.|++||... ..+..+..|...|.+++|+|+++++++...+..
T Consensus 387 --~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~-------------~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~ 451 (577)
T 2ymu_A 387 --SVRGVAFSPDGQTIASASDDKTVKLWNRNG-------------QLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVK 451 (577)
T ss_dssp --CEEEEEECTTSSCEEEEETTSEEEEECTTC-------------CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred --CeEEEEECCCCCEEEEEeCCCEEEEEeCCC-------------CEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEE
Confidence 488999999999999999999999999532 334556789999999999999999987654432
Q ss_pred ----CCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecC
Q psy988 239 ----SESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSE 314 (408)
Q Consensus 239 ----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 314 (408)
.......+..|...|.+++|+|++++|++++.|+.|++||. +++++..+.+|.. .|++++|+|+|++|++++.
T Consensus 452 ~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~--~v~~l~~s~dg~~l~s~~~ 528 (577)
T 2ymu_A 452 LWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSS--SVRGVAFSPDGQTIASASD 528 (577)
T ss_dssp EEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSS--CEEEEEECTTSSCEEEEET
T ss_pred EEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCC--CEEEEEEcCCCCEEEEEEC
Confidence 33445566788999999999999999999999999999995 6788888888765 7899999999999999999
Q ss_pred CceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEe
Q psy988 315 NQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFL 392 (408)
Q Consensus 315 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~ 392 (408)
||.|++||... +++..+.+|.+.|++++|+| ||++|+|++.||+|++||
T Consensus 529 dg~v~lwd~~~-------------~~~~~~~~h~~~v~~~~fs~----------------dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 529 DKTVKLWNRNG-------------QLLQTLTGHSSSVWGVAFSP----------------DGQTIASASSDKTVKLWN 577 (577)
T ss_dssp TSEEEEECTTS-------------CEEEEEECCSSCEEEEEECT----------------TSSCEEEEETTSCEEEEC
T ss_pred cCEEEEEeCCC-------------CEEEEEcCCCCCEEEEEEcC----------------CCCEEEEEeCCCEEEEeC
Confidence 99999999643 56778899999999999999 999999999999999997
No 6
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.3e-50 Score=343.65 Aligned_cols=294 Identities=18% Similarity=0.355 Sum_probs=247.9
Q ss_pred eeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEE
Q psy988 14 ECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCI 92 (408)
Q Consensus 14 ~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 92 (408)
+....+. |.+.|++++|+| ++++|++|+.||+|++||+.+++.. ..+..|...|.+++|+|++++|++++.|+.++
T Consensus 46 ~~~~~l~gH~~~v~~~~~s~-d~~~l~s~s~Dg~v~iWd~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~ 122 (340)
T 1got_B 46 RTRRTLRGHLAKIYAMHWGT-DSRLLLSASQDGKLIIWDSYTTNKV--HAIPLRSSWVMTCAYAPSGNYVACGGLDNICS 122 (340)
T ss_dssp CEEEEECCCSSCEEEEEECT-TSSEEEEEETTTEEEEEETTTCCEE--EEEECSSSCEEEEEECTTSSEEEEEETTCEEE
T ss_pred hhheeecCCCCceEEEEECC-CCCEEEEEeCCCcEEEEECCCCCcc--eEeecCCccEEEEEECCCCCEEEEEeCCCeEE
Confidence 3445554 999999999999 9999999999999999999988766 67888999999999999999999999999999
Q ss_pred EEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecC
Q psy988 93 FYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHD 172 (408)
Q Consensus 93 iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (408)
+|++.+........ ....+|...|.++.|++++ .+++++.|+.|++||+++++....+.+|... +.+++|+|+
T Consensus 123 iw~~~~~~~~~~~~----~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~--v~~~~~~~~ 195 (340)
T 1got_B 123 IYNLKTREGNVRVS----RELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQQTTTFTGHTGD--VMSLSLAPD 195 (340)
T ss_dssp EEETTTCSBSCEEE----EEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTTEEEEEECCCSSC--EEEEEECTT
T ss_pred EEECccCCCcceeE----EEecCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCCcEEEEEcCCCCc--eEEEEECCC
Confidence 99998754321111 1123566789999999866 5899999999999999999988888877654 889999999
Q ss_pred CCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCce
Q psy988 173 GKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRK 252 (408)
Q Consensus 173 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (408)
+++|++|+.|+.|++||++++.. ...+. .|...
T Consensus 196 ~~~l~sg~~d~~v~~wd~~~~~~------------~~~~~-----------------------------------~h~~~ 228 (340)
T 1got_B 196 TRLFVSGACDASAKLWDVREGMC------------RQTFT-----------------------------------GHESD 228 (340)
T ss_dssp SSEEEEEETTSCEEEEETTTCSE------------EEEEC-----------------------------------CCSSC
T ss_pred CCEEEEEeCCCcEEEEECCCCee------------EEEEc-----------------------------------CCcCC
Confidence 99999999999999999865321 12223 34455
Q ss_pred eeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccc
Q psy988 253 ISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSS 332 (408)
Q Consensus 253 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 332 (408)
|.+++|+|++++|++++.|++|++||+++++.+..+........+.+++|+|+|++|++|+.||.|++||+.+.
T Consensus 229 v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~------ 302 (340)
T 1got_B 229 INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA------ 302 (340)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTC------
T ss_pred EEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccC------
Confidence 66666666777889999999999999999888777765444457899999999999999999999999999876
Q ss_pred cccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEe
Q psy988 333 VRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFL 392 (408)
Q Consensus 333 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~ 392 (408)
+.+..+.+|.+.|.+++|+| +|++|+||+.||.|++||
T Consensus 303 ------~~~~~~~~h~~~v~~~~~s~----------------dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 303 ------DRAGVLAGHDNRVSCLGVTD----------------DGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp ------CEEEEEECCSSCEEEEEECT----------------TSSCEEEEETTSCEEEEC
T ss_pred ------cEeeEeecCCCcEEEEEEcC----------------CCCEEEEEcCCccEEecC
Confidence 56677889999999999999 999999999999999997
No 7
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.2e-51 Score=353.58 Aligned_cols=317 Identities=17% Similarity=0.322 Sum_probs=255.6
Q ss_pred eEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEE
Q psy988 4 TVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFA 82 (408)
Q Consensus 4 ~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 82 (408)
.+..|+..+..+.+.+. |.+.|++++|+| ++++|++|+.||+|+|||+.+++.. ..+..|...|.+++|+|+|++|
T Consensus 47 ~~~~~~~~~~~~~~~l~gH~~~V~~~~~sp-~~~~l~s~s~D~~v~iWd~~~~~~~--~~~~~h~~~v~~~~~s~~g~~l 123 (380)
T 3iz6_a 47 TAVSFNPTDLVCCRTLQGHSGKVYSLDWTP-EKNWIVSASQDGRLIVWNALTSQKT--HAIKLHCPWVMECAFAPNGQSV 123 (380)
T ss_dssp GCCCCCCCCCEEEEEECCCSSCEEEEEECT-TSSCEEEEETTSEEEEEETTTTEEE--EEEECCCTTCCCCEECTTSSEE
T ss_pred cccccccceeEEeecccccccEEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCccc--eEEecCCCCEEEEEECCCCCEE
Confidence 34567777888888887 999999999999 9999999999999999999988766 6888999999999999999999
Q ss_pred EEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCC-CeEEEeeCCCeEEEEEccCcccceeecC---c
Q psy988 83 VVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGE-DKILVTSNDSRIRLYDLRDLNLSCKYKG---Y 158 (408)
Q Consensus 83 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~ 158 (408)
++++.|+.+++|++.+...... .........+|.+.+.++.|.|++ ..|++++.|+.|++||+++++.+..+.. .
T Consensus 124 as~~~d~~v~iw~~~~~~~~~~-~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~ 202 (380)
T 3iz6_a 124 ACGGLDSACSIFNLSSQADRDG-NMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPS 202 (380)
T ss_dssp EECCSSSCCEEEECCCCSSCCC-SSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSS
T ss_pred EEeeCCCcEEEEECCCCccccC-CccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCC
Confidence 9999999999999875321100 011112235677889999999974 5799999999999999999987766622 1
Q ss_pred cccccceEEEEec-CCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCC
Q psy988 159 VNVSSQIKASFSH-DGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPD 237 (408)
Q Consensus 159 ~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 237 (408)
.+...+.++++++ ++++|++|+.|+.|++||++... ..+..+.
T Consensus 203 ~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~-----------~~~~~~~------------------------- 246 (380)
T 3iz6_a 203 GHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS-----------RAVRTYH------------------------- 246 (380)
T ss_dssp SCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTC-----------CCCEEEC-------------------------
T ss_pred CCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCC-----------cceEEEC-------------------------
Confidence 2234578889977 88999999999999999986321 1122223
Q ss_pred CCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccc-----eeceeEEEEcCCCCEEEEe
Q psy988 238 KSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVN-----VSSQIKASFSHDGKYIVSG 312 (408)
Q Consensus 238 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~ 312 (408)
.|...|.+++|+|++++|++++.|++|++||+++++.+..+..+.. ...+.+++|+|+|++|++|
T Consensus 247 ----------~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g 316 (380)
T 3iz6_a 247 ----------GHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAG 316 (380)
T ss_dssp ----------CCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEE
T ss_pred ----------CcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEE
Confidence 4555666666777778889999999999999999998888765432 1247899999999999999
Q ss_pred cCCceEEEeeccccCccccccccCccccceee----eeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeE
Q psy988 313 SENQCIYIWKTHHDYAKFSSVRRDRNDFWEGI----KAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVI 388 (408)
Q Consensus 313 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~----~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v 388 (408)
+.||.|++||+..+ +.+..+ .+|.+.|++++|+| +|++|+||+.||+|
T Consensus 317 ~~dg~i~vwd~~~~------------~~~~~~~~~~~~h~~~v~~l~~s~----------------dg~~l~sgs~D~~i 368 (380)
T 3iz6_a 317 YSNGDCYVWDTLLA------------EMVLNLGTLQNSHEGRISCLGLSS----------------DGSALCTGSWDKNL 368 (380)
T ss_dssp CTTSCEEEEETTTC------------CEEEEECCSCSSCCCCCCEEEECS----------------SSSEEEEECTTSCE
T ss_pred ECCCCEEEEECCCC------------ceEEEEecccCCCCCceEEEEECC----------------CCCEEEEeeCCCCE
Confidence 99999999998775 233333 57999999999999 99999999999999
Q ss_pred EEEeCCCCCC
Q psy988 389 RVFLNKTKPK 398 (408)
Q Consensus 389 ~iw~~~~~~~ 398 (408)
++|++...++
T Consensus 369 ~iW~~~~~~~ 378 (380)
T 3iz6_a 369 KIWAFSGHRK 378 (380)
T ss_dssp EEEECCSSSS
T ss_pred EEEecCCCcc
Confidence 9999987654
No 8
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=4.3e-50 Score=339.05 Aligned_cols=310 Identities=15% Similarity=0.162 Sum_probs=230.0
Q ss_pred EEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCC---------CceeeeeecCCceeeEEEEEe
Q psy988 6 RLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDK---------KVAVWNEVEGQTKLITAANFC 76 (408)
Q Consensus 6 ~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~---------~~~~~~~~~~~~~~v~~~~~~ 76 (408)
+.|++....+. .|...|.+++|+| ||++|++++ |+++++||.... ..........+...|.+++|+
T Consensus 17 r~w~~~~~~~~---~~~~~v~~~~fs~-dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 91 (344)
T 4gqb_B 17 REWNLPPNAPA---CMERQLEAARYRS-DGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWV 91 (344)
T ss_dssp ------CCSCS---SCCSEEEEEEECT-TSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEE
T ss_pred cccCCCCCCcc---cccCCEEEEEECC-CCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEe
Confidence 56666544332 2778899999999 999999887 678888873210 000111223355679999999
Q ss_pred cCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeec
Q psy988 77 ENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYK 156 (408)
Q Consensus 77 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 156 (408)
|++ .|++++.||+|++||+++++........ ..+|...|.+++|+|++++|++++.|+.|++||+++++.+..+.
T Consensus 92 ~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~----~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~ 166 (344)
T 4gqb_B 92 GER-GILVASDSGAVELWELDENETLIVSKFC----KYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYR 166 (344)
T ss_dssp TTT-EEEEEETTSEEEEEEECTTSSCEEEEEE----EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred CCC-eEEEEECCCEEEEEeccCCCceeEeecc----ccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEc
Confidence 985 6889999999999999988765443322 13567899999999999999999999999999999999999998
Q ss_pred CccccccceEEEEecCCC-EEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecC
Q psy988 157 GYVNVSSQIKASFSHDGK-YIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQME 235 (408)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 235 (408)
+|... +.+++|++++. +|++++.|+.|++||++++..... .....+...
T Consensus 167 ~h~~~--V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~----------~~~~~~~~~------------------ 216 (344)
T 4gqb_B 167 AHAAQ--VTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQ----------IGCSAPGYL------------------ 216 (344)
T ss_dssp CCSSC--EEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEE----------CC----CCC------------------
T ss_pred CcCCc--eEEEEecCCCCCceeeeccccccccccccccceeee----------eecceeecc------------------
Confidence 87755 88999999885 688999999999999976432211 001122223
Q ss_pred CCCCCCceeeecCCCceeeeeccCC-CCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCC-CEEEEec
Q psy988 236 PDKSESTGYVLNATGRKISGIEPMP-GEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDG-KYIVSGS 313 (408)
Q Consensus 236 ~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~ 313 (408)
+.+++|+| ++++|++|+.|+.|++||+++++++..+.+|.. .|.+++|+|++ ++|++|+
T Consensus 217 -----------------~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~--~v~~v~fsp~g~~~lasgs 277 (344)
T 4gqb_B 217 -----------------PTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQ--CVTGLVFSPHSVPFLASLS 277 (344)
T ss_dssp -----------------EEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSS--CEEEEEECSSSSCCEEEEE
T ss_pred -----------------ceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCC--CEEEEEEccCCCeEEEEEe
Confidence 44455555 345678899999999999999999999998766 88999999998 5899999
Q ss_pred CCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcc-cEEEEEecCCeEEEEe
Q psy988 314 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTG-YVLVSADFNGVIRVFL 392 (408)
Q Consensus 314 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~s~~~dg~v~iw~ 392 (408)
.|++|+|||+.++ + +..+.+|.+.|++++|+| ++ .+|+|++.||+|++|+
T Consensus 278 ~D~~i~vwd~~~~------------~-~~~~~~H~~~V~~v~~sp----------------~~~~llas~s~D~~v~~w~ 328 (344)
T 4gqb_B 278 EDCSLAVLDSSLS------------E-LFRSQAHRDFVRDATWSP----------------LNHSLLTTVGWDHQVVHHV 328 (344)
T ss_dssp TTSCEEEECTTCC------------E-EEEECCCSSCEEEEEECS----------------SSTTEEEEEETTSCEEEEE
T ss_pred CCCeEEEEECCCC------------c-EEEEcCCCCCEEEEEEeC----------------CCCeEEEEEcCCCeEEEEE
Confidence 9999999999875 2 345788999999999999 65 4788999999999999
Q ss_pred CCCCCCccccc
Q psy988 393 NKTKPKHSSLP 403 (408)
Q Consensus 393 ~~~~~~~~~~~ 403 (408)
+++.+....-|
T Consensus 329 v~~~~~~~p~p 339 (344)
T 4gqb_B 329 VPTEPLPAPGP 339 (344)
T ss_dssp CCC--------
T ss_pred CCCCCCCCCCC
Confidence 98876544433
No 9
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=6.7e-50 Score=340.63 Aligned_cols=296 Identities=19% Similarity=0.296 Sum_probs=245.3
Q ss_pred eEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEE
Q psy988 15 CLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIF 93 (408)
Q Consensus 15 ~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 93 (408)
....+. |.+.|++++|+| ++++|++|+.||+|++||..+++.. ..+..|...|.+++|+|+|.+|++++.|+.+++
T Consensus 56 ~~~~l~gH~~~V~~~~~s~-d~~~l~s~s~Dg~v~vWd~~~~~~~--~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v 132 (354)
T 2pbi_B 56 TRRTLKGHGNKVLCMDWCK-DKRRIVSSSQDGKVIVWDSFTTNKE--HAVTMPCTWVMACAYAPSGCAIACGGLDNKCSV 132 (354)
T ss_dssp EEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEE--EEEECSSSCCCEEEECTTSSEEEEESTTSEEEE
T ss_pred EEEEecCCCCeEEEEEECC-CCCEEEEEeCCCeEEEEECCCCCcc--eEEecCCCCEEEEEECCCCCEEEEeeCCCCEEE
Confidence 445555 999999999999 9999999999999999999888766 577788899999999999999999999999999
Q ss_pred EeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEec--
Q psy988 94 YTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSH-- 171 (408)
Q Consensus 94 w~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-- 171 (408)
|++........ .........|...|.++.|+|++..|++++.|+.|++||+++++.+..+.+|... +.+++++|
T Consensus 133 ~~~~~~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~--v~~~~~~~~~ 208 (354)
T 2pbi_B 133 YPLTFDKNENM--AAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGAD--VLCLDLAPSE 208 (354)
T ss_dssp EECCCCTTCCS--GGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSC--EEEEEECCCS
T ss_pred EEEeccccccc--cccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCC--eEEEEEEeCC
Confidence 99864321000 0000111246679999999999999999999999999999999998888887654 66777776
Q ss_pred CCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCc
Q psy988 172 DGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGR 251 (408)
Q Consensus 172 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (408)
++++|++|+.||.|++||++++. ....+.. |..
T Consensus 209 ~g~~l~sgs~Dg~v~~wd~~~~~------------~~~~~~~-----------------------------------h~~ 241 (354)
T 2pbi_B 209 TGNTFVSGGCDKKAMVWDMRSGQ------------CVQAFET-----------------------------------HES 241 (354)
T ss_dssp SCCEEEEEETTSCEEEEETTTCC------------EEEEECC-----------------------------------CSS
T ss_pred CCCEEEEEeCCCeEEEEECCCCc------------EEEEecC-----------------------------------CCC
Confidence 57899999999999999987532 1222333 444
Q ss_pred eeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCcccc
Q psy988 252 KISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFS 331 (408)
Q Consensus 252 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 331 (408)
.|.+++|+|++.+|++++.|++|++||++.++.+..+..+.....+.+++|+|++++|++|+.|+.|++||+.++
T Consensus 242 ~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~----- 316 (354)
T 2pbi_B 242 DVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKG----- 316 (354)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTC-----
T ss_pred CeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCC-----
Confidence 555566666677789999999999999999888777766554456789999999999999999999999999876
Q ss_pred ccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEe
Q psy988 332 SVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFL 392 (408)
Q Consensus 332 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~ 392 (408)
..+..+.+|.+.|++++|+| +|++|++|+.||+|++|+
T Consensus 317 -------~~~~~l~~h~~~v~~l~~sp----------------dg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 317 -------SRVSILFGHENRVSTLRVSP----------------DGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp -------SEEEEECCCSSCEEEEEECT----------------TSSCEEEEETTSEEEEEC
T ss_pred -------ceEEEEECCCCcEEEEEECC----------------CCCEEEEEcCCCCEEecC
Confidence 55677889999999999999 999999999999999996
No 10
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=8.7e-49 Score=327.06 Aligned_cols=293 Identities=20% Similarity=0.314 Sum_probs=241.7
Q ss_pred eEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEE
Q psy988 15 CLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIF 93 (408)
Q Consensus 15 ~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 93 (408)
..+++. |.+.|++++|+| ++++|++++.||+|++||+.++... ..+..|..+|.+++|+|++++|++|+.|+.|++
T Consensus 5 ~~~~~~~h~~~V~~~~fsp-~~~~l~s~~~dg~v~lWd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~v 81 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGIDFHP-TEPWVLTTLYSGRVELWNYETQVEV--RSIQVTETPVRAGKFIARKNWIIVGSDDFRIRV 81 (304)
T ss_dssp CEEEEEEECSCEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEE--EEEECCSSCEEEEEEEGGGTEEEEEETTSEEEE
T ss_pred eEEeecCCCCceEEEEECC-CCCEEEEEcCCCcEEEEECCCCcee--EEeeccCCcEEEEEEeCCCCEEEEECCCCEEEE
Confidence 345555 999999999999 9999999999999999999988765 688899999999999999999999999999999
Q ss_pred EeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcc-cceeecCccccccceEEEEec-
Q psy988 94 YTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLN-LSCKYKGYVNVSSQIKASFSH- 171 (408)
Q Consensus 94 w~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~- 171 (408)
||+.+++....+. .|...|.+++|+|++++|++++.|+.|++||++++. ....+.+|... +.+++|+|
T Consensus 82 wd~~~~~~~~~~~--------~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~--v~~v~~~p~ 151 (304)
T 2ynn_A 82 FNYNTGEKVVDFE--------AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHF--VMCVAFNPK 151 (304)
T ss_dssp EETTTCCEEEEEE--------CCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSC--EEEEEECTT
T ss_pred EECCCCcEEEEEe--------CCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCc--EEEEEECCC
Confidence 9999887654432 466799999999999999999999999999998774 44556666544 88999999
Q ss_pred CCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCc
Q psy988 172 DGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGR 251 (408)
Q Consensus 172 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (408)
++..|++|+.|+.|++||++...... .....+...+..+.++|
T Consensus 152 ~~~~l~sgs~D~~v~iwd~~~~~~~~-----------~~~~~~~~~v~~~~~~~-------------------------- 194 (304)
T 2ynn_A 152 DPSTFASGCLDRTVKVWSLGQSTPNF-----------TLTTGQERGVNYVDYYP-------------------------- 194 (304)
T ss_dssp CTTEEEEEETTSEEEEEETTCSSCSE-----------EEECCCTTCEEEEEECC--------------------------
T ss_pred CCCEEEEEeCCCeEEEEECCCCCccc-----------eeccCCcCcEEEEEEEE--------------------------
Confidence 67899999999999999986532111 11112223344444333
Q ss_pred eeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCcccc
Q psy988 252 KISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFS 331 (408)
Q Consensus 252 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 331 (408)
.+++.+|++++.|++|++||+++++++..+.+|.. .+.+++|+|++++|++|+.||.|++||+.+.
T Consensus 195 -------~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~--~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~----- 260 (304)
T 2ynn_A 195 -------LPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS--NVSFAVFHPTLPIIISGSEDGTLKIWNSSTY----- 260 (304)
T ss_dssp -------STTCCEEEEEETTSEEEEEETTTTEEEEEEECCSS--CEEEEEECSSSSEEEEEETTSCEEEEETTTC-----
T ss_pred -------cCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCC--CEEEEEECCCCCEEEEEcCCCeEEEEECCCC-----
Confidence 23677899999999999999999999999998866 7889999999999999999999999999886
Q ss_pred ccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCccc--EEEEEecCCeEEEEeCCC
Q psy988 332 SVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGY--VLVSADFNGVIRVFLNKT 395 (408)
Q Consensus 332 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~--~l~s~~~dg~v~iw~~~~ 395 (408)
+++..+..|...+.+++|+| ++. ++++|+.| .+.+|++..
T Consensus 261 -------~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~asg~~~-g~~~~~~~~ 302 (304)
T 2ynn_A 261 -------KVEKTLNVGLERSWCIATHP----------------TGRKNYIASGFDN-GFTVLSLGN 302 (304)
T ss_dssp -------CEEEEECCSSSSEEEEEECT----------------TCGGGCEEEEETT-EEEEEECC-
T ss_pred -------ceeeeccCCCccEEEEEECC----------------CCCceEEEEecCC-ceEEEEecc
Confidence 67778888999999999999 543 57777655 577887765
No 11
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=4.6e-49 Score=334.60 Aligned_cols=316 Identities=11% Similarity=0.197 Sum_probs=237.4
Q ss_pred eeEeEEE-eCC-ceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeee-eecCCceeeEEEEEecCCCEEEEEecCCE
Q psy988 14 ECLCCFQ-HID-FVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWN-EVEGQTKLITAANFCENGKFAVVGSYDGR 90 (408)
Q Consensus 14 ~~~~~~~-h~~-~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 90 (408)
+++..+. |.+ .|++++|+| ++++||+|+.|++|+|||+.++...... ...+|...|.+++|+|++++|++++.|+.
T Consensus 6 ~~~~~~~~h~~~~v~~l~~sp-~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~ 84 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAWNP-AGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDAT 84 (345)
T ss_dssp EEEEEECCSTTSCEEEEEECT-TSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EEeeeecCCCCCcEEEEEECC-CCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCc
Confidence 4556665 887 999999999 9999999999999999999887644222 34689999999999999999999999999
Q ss_pred EEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCccc---ceeecCccccccceEE
Q psy988 91 CIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNL---SCKYKGYVNVSSQIKA 167 (408)
Q Consensus 91 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~~~~~~ 167 (408)
+++|++......... ...+|...|.+++|+|++++|++++.|+.|++||++++.. ...+..|.. .+.++
T Consensus 85 v~iw~~~~~~~~~~~------~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~--~v~~~ 156 (345)
T 3fm0_A 85 TCIWKKNQDDFECVT------TLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQ--DVKHV 156 (345)
T ss_dssp EEEEEECCC-EEEEE------EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCS--CEEEE
T ss_pred EEEEEccCCCeEEEE------EccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCC--CeEEE
Confidence 999998876432211 1235678999999999999999999999999999987643 344555544 48899
Q ss_pred EEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeec
Q psy988 168 SFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLN 247 (408)
Q Consensus 168 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (408)
+|+|++++|++++.|+.|++||.+.+... ....+ .
T Consensus 157 ~~~p~~~~l~s~s~d~~i~~w~~~~~~~~----------~~~~~-----------------------------------~ 191 (345)
T 3fm0_A 157 VWHPSQELLASASYDDTVKLYREEEDDWV----------CCATL-----------------------------------E 191 (345)
T ss_dssp EECSSSSCEEEEETTSCEEEEEEETTEEE----------EEEEE-----------------------------------C
T ss_pred EECCCCCEEEEEeCCCcEEEEEecCCCEE----------EEEEe-----------------------------------c
Confidence 99999999999999999999998643211 01112 2
Q ss_pred CCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCC---------------eeeeEEeeccceeceeEEEEcCCCCEEEEe
Q psy988 248 ATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDL---------------NLSCKYKGYVNVSSQIKASFSHDGKYIVSG 312 (408)
Q Consensus 248 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~---------------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 312 (408)
.|...|.+++|+|++++|++++.|++|++||.... +++..+.+. +...|.+++|+|++.+|+++
T Consensus 192 ~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~v~~~~~~~~l~s~ 270 (345)
T 3fm0_A 192 GHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGF-HSRTIYDIAWCQLTGALATA 270 (345)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSS-CSSCEEEEEECTTTCCEEEE
T ss_pred CCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCC-CCCcEEEEEEecCCCEEEEE
Confidence 45556666677777888899999999999996322 223333331 23478999999999999999
Q ss_pred cCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcc-cEEEEEecCCeEEEE
Q psy988 313 SENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTG-YVLVSADFNGVIRVF 391 (408)
Q Consensus 313 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~s~~~dg~v~iw 391 (408)
+.|+.|++|+......... ...........+|...|++++|+| ++ .+||||+.||+|++|
T Consensus 271 ~~d~~i~vw~~~~~~~~~~---~~~~~~~~~~~~h~~~V~~v~~~p----------------~~~~~laS~s~Dg~v~~W 331 (345)
T 3fm0_A 271 CGDDAIRVFQEDPNSDPQQ---PTFSLTAHLHQAHSQDVNCVAWNP----------------KEPGLLASCSDDGEVAFW 331 (345)
T ss_dssp ETTSCEEEEEECTTSCTTS---CCEEEEEEETTSSSSCEEEEEECS----------------SSTTEEEEEETTSCEEEE
T ss_pred eCCCeEEEEEeCCCCCcce---eeEEEEeeecccccCcEeEeEEeC----------------CCceEEEEcCCCCcEEEE
Confidence 9999999999876432110 000011122357999999999999 66 599999999999999
Q ss_pred eCCCCCCccccc
Q psy988 392 LNKTKPKHSSLP 403 (408)
Q Consensus 392 ~~~~~~~~~~~~ 403 (408)
++.+++.....|
T Consensus 332 ~~~~~~~~~~~~ 343 (345)
T 3fm0_A 332 KYQRPEGLHHHH 343 (345)
T ss_dssp EECC--------
T ss_pred EecCCCCccccc
Confidence 999988765554
No 12
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=9.7e-50 Score=339.85 Aligned_cols=309 Identities=11% Similarity=0.143 Sum_probs=229.0
Q ss_pred eEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEEeC------CCcEEEEecCCCCce--eeeeecCCceeeEEEEE
Q psy988 4 TVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSL------DGKLRLWNIPDKKVA--VWNEVEGQTKLITAANF 75 (408)
Q Consensus 4 ~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~------dg~i~iw~~~~~~~~--~~~~~~~~~~~v~~~~~ 75 (408)
....|++....+ ..|...|++++||| ||++||+|+. |+.|++|+..++... ......+|...|.+++|
T Consensus 27 ~~~~w~~p~~~p---~~H~~~V~~v~fSp-DG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~ 102 (357)
T 4g56_B 27 KGSAWGRPVTAP---ACMEVQIGAVRYRR-DGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAW 102 (357)
T ss_dssp ----------------CCCSEEEEEEECS-SSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEE
T ss_pred cccccCCCCCCc---ccccCCEEEEEECC-CCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEE
Confidence 345565543222 23999999999999 9999999997 778999998776532 12344568889999999
Q ss_pred ecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceee
Q psy988 76 CENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKY 155 (408)
Q Consensus 76 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 155 (408)
+|++. +++++.||+|++||+.+++....... ...+|...|.+++|+|++++|++++.|+.|++||+++++.+..+
T Consensus 103 s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~----~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~ 177 (357)
T 4g56_B 103 VSEKG-ILVASDSGAVELWEILEKESLLVNKF----AKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSY 177 (357)
T ss_dssp ETTTE-EEEEETTSCEEEC--------CCCCE----EECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred cCCCC-EEEEECCCEEEEeeccccceeEEEee----ccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence 99986 55678899999999987654322111 12356789999999999999999999999999999999999888
Q ss_pred cCccccccceEEEEecCCC-EEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeec
Q psy988 156 KGYVNVSSQIKASFSHDGK-YIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQM 234 (408)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 234 (408)
..|... +.+++|++++. ++++++.||.|++||++++..... .....+...+.+++|+|++
T Consensus 178 ~~h~~~--v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~----------~~~~~~~~~v~~v~~sp~~------- 238 (357)
T 4g56_B 178 NAHSSE--VNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATR----------IDFCASDTIPTSVTWHPEK------- 238 (357)
T ss_dssp CCCSSC--EEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCB----------CCCTTCCSCEEEEEECTTS-------
T ss_pred cCCCCC--EEEEEEccCCCceeeeeccCCceEEEECCCCceeee----------eeeccccccccchhhhhcc-------
Confidence 887654 78999999875 788999999999999976432110 1122333444555554443
Q ss_pred CCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCC-CEEEEec
Q psy988 235 EPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDG-KYIVSGS 313 (408)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~ 313 (408)
+.+|++|+.|+.|++||+++++++..+.++.. .|.+++|+|++ ++||+|+
T Consensus 239 ---------------------------~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~--~v~~l~~sp~~~~~lasgs 289 (357)
T 4g56_B 239 ---------------------------DDTFACGDETGNVSLVNIKNPDSAQTSAVHSQ--NITGLAYSYHSSPFLASIS 289 (357)
T ss_dssp ---------------------------TTEEEEEESSSCEEEEESSCGGGCEEECCCSS--CEEEEEECSSSSCCEEEEE
T ss_pred ---------------------------cceEEEeecccceeEEECCCCcEeEEEeccce--eEEEEEEcCCCCCEEEEEe
Confidence 34578899999999999999999999988766 78999999987 5899999
Q ss_pred CCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeC
Q psy988 314 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLN 393 (408)
Q Consensus 314 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~ 393 (408)
.|++|+|||++++ +++. ..+|.+.|++++|+|. ++++|+|++.||+|++|++
T Consensus 290 ~D~~i~iwd~~~~------------~~~~-~~~H~~~V~~vafsP~---------------d~~~l~s~s~Dg~v~iW~~ 341 (357)
T 4g56_B 290 EDCTVAVLDADFS------------EVFR-DLSHRDFVTGVAWSPL---------------DHSKFTTVGWDHKVLHHHL 341 (357)
T ss_dssp TTSCEEEECTTSC------------EEEE-ECCCSSCEEEEEECSS---------------STTEEEEEETTSCEEEEEC
T ss_pred CCCEEEEEECCCC------------cEeE-ECCCCCCEEEEEEeCC---------------CCCEEEEEcCCCeEEEEEC
Confidence 9999999999876 3333 4479999999999984 6889999999999999999
Q ss_pred CCCC
Q psy988 394 KTKP 397 (408)
Q Consensus 394 ~~~~ 397 (408)
++..
T Consensus 342 ~~~~ 345 (357)
T 4g56_B 342 PSEG 345 (357)
T ss_dssp C---
T ss_pred CCCC
Confidence 7654
No 13
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.5e-48 Score=355.75 Aligned_cols=335 Identities=21% Similarity=0.373 Sum_probs=282.3
Q ss_pred CceEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCC
Q psy988 2 DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGK 80 (408)
Q Consensus 2 Dg~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 80 (408)
||.|++||.. ++.+..+. |...|.+++|+| ++++|++++.|+.|++|+... +.. ..+.+|...|.+++|+|+++
T Consensus 201 d~~v~~w~~~-~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~~~d~~i~~w~~~~-~~~--~~~~~~~~~v~~v~~~~d~~ 275 (577)
T 2ymu_A 201 DKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNRNG-QLL--QTLTGHSSSVNGVAFRPDGQ 275 (577)
T ss_dssp TSEEEEECTT-SCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSCEEEECTTS-CEE--EEECCCSSCEEEEEECTTSS
T ss_pred CCEEEEEeCC-CcEEEEEecCCCCEEEEEECC-CCCEEEEEeCCCEEEEEeCCC-CEE--EEEecCCCCEEEEEEcCCCC
Confidence 7899999964 56666665 999999999999 999999999999999999654 333 57889999999999999999
Q ss_pred EEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccc
Q psy988 81 FAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVN 160 (408)
Q Consensus 81 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 160 (408)
+|++++.|+.|++|+..... ... ...|...|.+++|+|+++.+++++.|+.|++||+... .+..+..+..
T Consensus 276 ~l~~~~~d~~i~~w~~~~~~-~~~--------~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~-~~~~~~~~~~ 345 (577)
T 2ymu_A 276 TIASASDDKTVKLWNRNGQL-LQT--------LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ-HLQTLTGHSS 345 (577)
T ss_dssp EEEEEETTSCEEEEETTSCE-EEE--------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC-EEEEECCCSS
T ss_pred EEEEEeCCCEEEEEeCCCcE-EEE--------EecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC-eeEEEeCCCC
Confidence 99999999999999975432 111 1346679999999999999999999999999998654 3455555544
Q ss_pred cccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCC--
Q psy988 161 VSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDK-- 238 (408)
Q Consensus 161 ~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-- 238 (408)
.+.+++|+|++++|++++.||.|++||... ..+..+..|...|.+++|+|+++++++...+..
T Consensus 346 --~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~-------------~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~ 410 (577)
T 2ymu_A 346 --SVWGVAFSPDGQTIASASDDKTVKLWNRNG-------------QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVK 410 (577)
T ss_dssp --CEEEEEECTTSSEEEEEETTSEEEEEETTC-------------CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEE
T ss_pred --CEEEEEECCCCCEEEEEeCCCEEEEEcCCC-------------CEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEE
Confidence 478899999999999999999999999642 334556788999999999999999987654422
Q ss_pred ----CCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecC
Q psy988 239 ----SESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSE 314 (408)
Q Consensus 239 ----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 314 (408)
.......+..|...|.+++|+|++++|++++.|+.|++||. +++.+..+.+|.. .+.+++|+|++++|++++.
T Consensus 411 ~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~--~v~~~~~spd~~~las~~~ 487 (577)
T 2ymu_A 411 LWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSS--SVRGVAFSPDGQTIASASD 487 (577)
T ss_dssp EECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSS--CEEEEEECTTSCEEEEEET
T ss_pred EEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCC--CEEEEEEcCCCCEEEEEeC
Confidence 33445566788999999999999999999999999999996 4677778877765 7899999999999999999
Q ss_pred CceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCC
Q psy988 315 NQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNK 394 (408)
Q Consensus 315 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~ 394 (408)
|+.|++|+... +++..+.+|...|++++|+| +|++||+++.||.|++||..
T Consensus 488 d~~i~iw~~~~-------------~~~~~~~~h~~~v~~l~~s~----------------dg~~l~s~~~dg~v~lwd~~ 538 (577)
T 2ymu_A 488 DKTVKLWNRNG-------------QLLQTLTGHSSSVRGVAFSP----------------DGQTIASASDDKTVKLWNRN 538 (577)
T ss_dssp TSEEEEEETTS-------------CEEEEEECCSSCEEEEEECT----------------TSSCEEEEETTSEEEEECTT
T ss_pred CCEEEEEcCCC-------------CEEEEEeCCCCCEEEEEEcC----------------CCCEEEEEECcCEEEEEeCC
Confidence 99999999643 56778899999999999999 99999999999999999964
Q ss_pred CCCCc
Q psy988 395 TKPKH 399 (408)
Q Consensus 395 ~~~~~ 399 (408)
++..
T Consensus 539 -~~~~ 542 (577)
T 2ymu_A 539 -GQLL 542 (577)
T ss_dssp -SCEE
T ss_pred -CCEE
Confidence 4433
No 14
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.2e-47 Score=322.11 Aligned_cols=294 Identities=22% Similarity=0.349 Sum_probs=248.5
Q ss_pred eeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEE
Q psy988 14 ECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCI 92 (408)
Q Consensus 14 ~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 92 (408)
.....+. |.+.|++++|+| ++++|++|+.||.|++|++.+++.. ..+.+|...|.+++|+|++++|++++.|+.|+
T Consensus 14 ~~~~~~~gh~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~~--~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~ 90 (312)
T 4ery_A 14 ALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFE--KTISGHKLGISDVAWSSDSNLLVSASDDKTLK 90 (312)
T ss_dssp EEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEE--EEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred eeEEEEcccCCcEEEEEECC-CCCEEEEeeCCCeEEEEeCCCcccc--hhhccCCCceEEEEEcCCCCEEEEECCCCEEE
Confidence 3344444 999999999999 9999999999999999999988766 67889999999999999999999999999999
Q ss_pred EEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecC
Q psy988 93 FYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHD 172 (408)
Q Consensus 93 iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (408)
+||+++.+....+. .|...|.+++|+|++++|++++.|+.|++||+++++....+..+... +.+++|+|+
T Consensus 91 vwd~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~--v~~~~~~~~ 160 (312)
T 4ery_A 91 IWDVSSGKCLKTLK--------GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP--VSAVHFNRD 160 (312)
T ss_dssp EEETTTCCEEEEEE--------CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSC--EEEEEECTT
T ss_pred EEECCCCcEEEEEc--------CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCc--EEEEEEcCC
Confidence 99999877554432 45678999999999999999999999999999999888888776544 788999999
Q ss_pred CCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCce
Q psy988 173 GKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRK 252 (408)
Q Consensus 173 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (408)
+++|++++.||.|++||++++..... + ...+...
T Consensus 161 ~~~l~~~~~d~~i~~wd~~~~~~~~~------------~----------------------------------~~~~~~~ 194 (312)
T 4ery_A 161 GSLIVSSSYDGLCRIWDTASGQCLKT------------L----------------------------------IDDDNPP 194 (312)
T ss_dssp SSEEEEEETTSCEEEEETTTCCEEEE------------E----------------------------------CCSSCCC
T ss_pred CCEEEEEeCCCcEEEEECCCCceeeE------------E----------------------------------eccCCCc
Confidence 99999999999999999875422110 0 0123345
Q ss_pred eeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEc-CCCCEEEEecCCceEEEeeccccCcccc
Q psy988 253 ISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFS-HDGKYIVSGSENQCIYIWKTHHDYAKFS 331 (408)
Q Consensus 253 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 331 (408)
+..++|+|++++|++++.|+.|++||+++++.+..+.++..........++ +++++|++|+.||.|++||+.++
T Consensus 195 ~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~----- 269 (312)
T 4ery_A 195 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK----- 269 (312)
T ss_dssp EEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTC-----
T ss_pred eEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCc-----
Confidence 666777778888899999999999999999999998887654333334444 67899999999999999999886
Q ss_pred ccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEe--cCCeEEEEeCC
Q psy988 332 SVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSAD--FNGVIRVFLNK 394 (408)
Q Consensus 332 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~--~dg~v~iw~~~ 394 (408)
+.+..+.+|...|.+++|+| ++++|++++ .|+.|++|+..
T Consensus 270 -------~~~~~~~~h~~~v~~~~~~p----------------~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 270 -------EIVQKLQGHTDVVISTACHP----------------TENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp -------CEEEEECCCSSCEEEEEECS----------------SSSEEEEEECTTTCCEEEEECC
T ss_pred -------hhhhhhhccCCcEEEEeecC----------------cCCceEEEEccCCccEEEecCC
Confidence 57778899999999999999 899999987 69999999964
No 15
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.9e-47 Score=329.50 Aligned_cols=313 Identities=18% Similarity=0.313 Sum_probs=245.0
Q ss_pred EEEEeccCCe-----eEeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCc------------
Q psy988 5 VRLWHISRKE-----CLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQT------------ 67 (408)
Q Consensus 5 i~vwd~~~~~-----~~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~------------ 67 (408)
..+|+....+ +...++|.+.|.+++|+| ++++||+|+ ++.+++|++.+++.. ..+..|.
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fsp-dg~~la~g~-~~~v~i~~~~~g~~~--~~l~~~~~~~~~~~~~~~~ 117 (393)
T 1erj_A 42 YILYNPALPREIDVELHKSLDHTSVVCCVKFSN-DGEYLATGC-NKTTQVYRVSDGSLV--ARLSDDSAANKDPENLNTS 117 (393)
T ss_dssp EEEECTTSCCCEEEEEEEEEECSSCCCEEEECT-TSSEEEEEC-BSCEEEEETTTCCEE--EEECC--------------
T ss_pred EEEECCCCCcccCceeEEecCCCCEEEEEEECC-CCCEEEEEc-CCcEEEEEecCCCEE--EEecCcccccccccccccc
Confidence 3466655433 234557999999999999 999999986 689999999988765 3444332
Q ss_pred ------eeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeE
Q psy988 68 ------KLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRI 141 (408)
Q Consensus 68 ------~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 141 (408)
..|.+++|+|+|++|++++.|+.|++||+.+.+....+ .+|...|.+++|+|++++|++++.|+.|
T Consensus 118 ~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~--------~~h~~~v~~~~~~p~~~~l~s~s~d~~v 189 (393)
T 1erj_A 118 SSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMIL--------QGHEQDIYSLDYFPSGDKLVSGSGDRTV 189 (393)
T ss_dssp ---CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE--------CCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred ccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE--------ccCCCCEEEEEEcCCCCEEEEecCCCcE
Confidence 24999999999999999999999999999987654332 3566799999999999999999999999
Q ss_pred EEEEccCcccceeecCccccccceEEEEec-CCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEE
Q psy988 142 RLYDLRDLNLSCKYKGYVNVSSQIKASFSH-DGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTC 220 (408)
Q Consensus 142 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 220 (408)
++||+++++....+..+ ..+.+++++| ++++|++++.|+.|++||++++..... +..
T Consensus 190 ~iwd~~~~~~~~~~~~~---~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~------------~~~------- 247 (393)
T 1erj_A 190 RIWDLRTGQCSLTLSIE---DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVER------------LDS------- 247 (393)
T ss_dssp EEEETTTTEEEEEEECS---SCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEE------------EC--------
T ss_pred EEEECCCCeeEEEEEcC---CCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEe------------ecc-------
Confidence 99999998877666543 3377899999 899999999999999999876432111 000
Q ss_pred EEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCe------------eeeEE
Q psy988 221 AVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLN------------LSCKY 288 (408)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~------------~~~~~ 288 (408)
.......|...|.+++|+|++++|++++.|+.|++||+++.. +...+
T Consensus 248 ---------------------~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~ 306 (393)
T 1erj_A 248 ---------------------ENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTY 306 (393)
T ss_dssp --------------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEE
T ss_pred ---------------------cccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEE
Confidence 000112456677777788888889999999999999997642 34455
Q ss_pred eeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccC
Q psy988 289 KGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQME 368 (408)
Q Consensus 289 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~ 368 (408)
.+|.. .+.+++|+|++++|++|+.|+.|++||+.++ +.+..+.+|...|.+++|++..
T Consensus 307 ~~h~~--~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~------------~~~~~l~~h~~~v~~v~~~~~~-------- 364 (393)
T 1erj_A 307 IGHKD--FVLSVATTQNDEYILSGSKDRGVLFWDKKSG------------NPLLMLQGHRNSVISVAVANGS-------- 364 (393)
T ss_dssp ECCSS--CEEEEEECGGGCEEEEEETTSEEEEEETTTC------------CEEEEEECCSSCEEEEEECSSC--------
T ss_pred ecccC--cEEEEEECCCCCEEEEEeCCCeEEEEECCCC------------eEEEEECCCCCCEEEEEecCCc--------
Confidence 55544 7889999999999999999999999999886 5677889999999999998721
Q ss_pred CCCCCCcccEEEEEecCCeEEEEeCCCC
Q psy988 369 PDKSESTGYVLVSADFNGVIRVFLNKTK 396 (408)
Q Consensus 369 ~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 396 (408)
.+++++++|+||+.||+|++|++...
T Consensus 365 --~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 365 --SLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp --TTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred --CcCCCCCEEEEECCCCcEEECccccc
Confidence 23347899999999999999998654
No 16
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=3.4e-47 Score=319.49 Aligned_cols=300 Identities=15% Similarity=0.232 Sum_probs=237.0
Q ss_pred eEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCc---eeeeeecCCceeeEEEEEecCCCEEEEEecCCE
Q psy988 15 CLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKV---AVWNEVEGQTKLITAANFCENGKFAVVGSYDGR 90 (408)
Q Consensus 15 ~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 90 (408)
+...+. |.+.|++++|+|.++++|++|+.|++|++|++..... .....+.+|...|.+++|+|++++|++++.|++
T Consensus 9 l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~ 88 (319)
T 3frx_A 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKT 88 (319)
T ss_dssp EEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred EEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCE
Confidence 334454 9999999999994458999999999999999875432 234678899999999999999999999999999
Q ss_pred EEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEe
Q psy988 91 CIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFS 170 (408)
Q Consensus 91 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (408)
|++||+.+++....+. +|...|.+++|+|++.+|++++.|+.|++||++. +.+..+.+|... +.++.+.
T Consensus 89 v~~wd~~~~~~~~~~~--------~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~h~~~--v~~~~~~ 157 (319)
T 3frx_A 89 LRLWDVATGETYQRFV--------GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLATLLGHNDW--VSQVRVV 157 (319)
T ss_dssp EEEEETTTTEEEEEEE--------CCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS-CEEEEECCCSSC--EEEEEEC
T ss_pred EEEEECCCCCeeEEEc--------cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeEEEEeccCCc--EEEEEEc
Confidence 9999999987654432 5667999999999999999999999999999974 555666666543 7788888
Q ss_pred cC------CCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCcee
Q psy988 171 HD------GKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGY 244 (408)
Q Consensus 171 ~~------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (408)
|. +..|++++.|+.|++||+++... ...+.
T Consensus 158 ~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~------------~~~~~-------------------------------- 193 (319)
T 3frx_A 158 PNEKADDDSVTIISAGNDKMVKAWNLNQFQI------------EADFI-------------------------------- 193 (319)
T ss_dssp CC------CCEEEEEETTSCEEEEETTTTEE------------EEEEC--------------------------------
T ss_pred cCCCCCCCccEEEEEeCCCEEEEEECCcchh------------heeec--------------------------------
Confidence 84 45899999999999999865321 11222
Q ss_pred eecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeecc
Q psy988 245 VLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTH 324 (408)
Q Consensus 245 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 324 (408)
.|...|.+++|+|++++|++++.|+.|++||+.+++.+..+..+ ..+.+++|+|++.+|++++.+ .+++|++.
T Consensus 194 ---~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~v~~~~~sp~~~~la~~~~~-~i~v~~~~ 266 (319)
T 3frx_A 194 ---GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ---DEVFSLAFSPNRYWLAAATAT-GIKVFSLD 266 (319)
T ss_dssp ---CCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC---SCEEEEEECSSSSEEEEEETT-EEEEEEET
T ss_pred ---CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC---CcEEEEEEcCCCCEEEEEcCC-CcEEEEeC
Confidence 34455666666677778899999999999999999988888753 368899999999999988755 59999987
Q ss_pred ccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCC
Q psy988 325 HDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTK 396 (408)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 396 (408)
........ ..........|...+.+++|+| ||++|++|+.||.|++|++.++
T Consensus 267 ~~~~~~~~----~~~~~~~~~~~~~~v~~~~~sp----------------dg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 267 PQYLVDDL----RPEFAGYSKAAEPHAVSLAWSA----------------DGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp TEEEEEEE----CCCCTTCCGGGCCCEEEEEECT----------------TSSEEEEEETTSCEEEEEEEEC
T ss_pred cCeeeecc----CccccccccCcCcceeEEEECC----------------CCCEEEEeecCceEEEEEEeec
Confidence 64211100 0011111234667899999999 9999999999999999998764
No 17
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=6e-47 Score=321.67 Aligned_cols=307 Identities=17% Similarity=0.245 Sum_probs=231.8
Q ss_pred eEeEEE-eCCceEEEEE-----cCCCCCEEEEEeCCCcEEEEecCCCCc-----eeeeeecCCceeeEEEEEecCCCEEE
Q psy988 15 CLCCFQ-HIDFVTAICF-----HPRDDRYFLSGSLDGKLRLWNIPDKKV-----AVWNEVEGQTKLITAANFCENGKFAV 83 (408)
Q Consensus 15 ~~~~~~-h~~~v~~~~~-----sp~~~~~l~t~~~dg~i~iw~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~ 83 (408)
+...+. |.+.|++++| +|.++++|++|+.|++|++||+.+.+. .....+.+|...|.+++|+|++.+++
T Consensus 13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~ 92 (343)
T 2xzm_R 13 KRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAI 92 (343)
T ss_dssp EEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEE
T ss_pred eeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEE
Confidence 344555 9999999999 654789999999999999999976431 23357889999999999999999999
Q ss_pred EEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCcccccc
Q psy988 84 VGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSS 163 (408)
Q Consensus 84 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 163 (408)
+++.|++|++||+++++....+. +|...|.+++|+|++++|++++.|+.|++||+.............+...
T Consensus 93 s~s~D~~v~lwd~~~~~~~~~~~--------~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~ 164 (343)
T 2xzm_R 93 SSSWDKTLRLWDLRTGTTYKRFV--------GHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDW 164 (343)
T ss_dssp EEETTSEEEEEETTSSCEEEEEE--------CCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSC
T ss_pred EEcCCCcEEEEECCCCcEEEEEc--------CCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCce
Confidence 99999999999999887544332 4667999999999999999999999999999974332222222233345
Q ss_pred ceEEEEecCC----------CEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeee
Q psy988 164 QIKASFSHDG----------KYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQ 233 (408)
Q Consensus 164 ~~~~~~~~~~----------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 233 (408)
+.+++|+|++ .+|++++.||.|++||.... ....+.
T Consensus 165 v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-------------~~~~~~--------------------- 210 (343)
T 2xzm_R 165 VSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQ-------------IRYTFK--------------------- 210 (343)
T ss_dssp EEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTE-------------EEEEEE---------------------
T ss_pred eeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCc-------------eeEEEc---------------------
Confidence 7889999987 78999999999999994311 111222
Q ss_pred cCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCC-eeeeEEeeccceeceeEEEEcCCCCEEEEe
Q psy988 234 MEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDL-NLSCKYKGYVNVSSQIKASFSHDGKYIVSG 312 (408)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 312 (408)
.|...|.+++|+|++++|++++.|+.|++||+... .....+. +. ..+.+++|+|++++++++
T Consensus 211 --------------~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~--~~v~~v~~sp~~~~la~~ 273 (343)
T 2xzm_R 211 --------------AHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD-AG--STINQIAFNPKLQWVAVG 273 (343)
T ss_dssp --------------CCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEE-CS--SCEEEEEECSSSCEEEEE
T ss_pred --------------CccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeec-CC--CcEEEEEECCCCCEEEEE
Confidence 34455666666777788899999999999999543 3433332 22 368899999999988765
Q ss_pred cCCceEEEeeccccCcccc-ccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEE
Q psy988 313 SENQCIYIWKTHHDYAKFS-SVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVF 391 (408)
Q Consensus 313 ~~dg~i~iw~~~~~~~~~~-~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw 391 (408)
.|+.|++|++.+...... ..............+|...|.+++|+| +|++|++|+.||.|++|
T Consensus 274 -~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp----------------~g~~l~sg~~Dg~v~~w 336 (343)
T 2xzm_R 274 -TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNA----------------LGKKLFAGFTDGVIRTF 336 (343)
T ss_dssp -ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECS----------------SSCCEEEEETTSEEEEE
T ss_pred -CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECC----------------CCCeEEEecCCceEEEE
Confidence 577899999987532210 001000011122347888999999999 99999999999999999
Q ss_pred eCCCCC
Q psy988 392 LNKTKP 397 (408)
Q Consensus 392 ~~~~~~ 397 (408)
++.++.
T Consensus 337 ~~~~g~ 342 (343)
T 2xzm_R 337 SFETSA 342 (343)
T ss_dssp EEEEEE
T ss_pred EEEccC
Confidence 987653
No 18
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-46 Score=330.47 Aligned_cols=349 Identities=12% Similarity=0.116 Sum_probs=268.4
Q ss_pred eEEEEeccCCeeEeE-EEeCCceEEEEEcCCCCC-EEEEEeCCCcEEEEec----CCCCce----eeeeecC--------
Q psy988 4 TVRLWHISRKECLCC-FQHIDFVTAICFHPRDDR-YFLSGSLDGKLRLWNI----PDKKVA----VWNEVEG-------- 65 (408)
Q Consensus 4 ~i~vwd~~~~~~~~~-~~h~~~v~~~~~sp~~~~-~l~t~~~dg~i~iw~~----~~~~~~----~~~~~~~-------- 65 (408)
.+.+|+++....... ..|.+.|++++|+| +++ +||+|+.||.|++|++ .+++.. ....+..
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (425)
T 1r5m_A 26 IDSSDDLDGFVKILKEIVKLDNIVSSTWNP-LDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASS 104 (425)
T ss_dssp --------CCCEECEEEEECSCCSEEEECS-SCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC---
T ss_pred ccccccchhhhhheeeeeccCceEEEEECC-CCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccc
Confidence 356788766554433 34889999999999 888 9999999999999999 777620 0122332
Q ss_pred --CceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEE
Q psy988 66 --QTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRL 143 (408)
Q Consensus 66 --~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 143 (408)
|...|.+++|+|++++|++++.||.|++||. +++....+ ..|...|.+++|+|++++|++++.|+.|++
T Consensus 105 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~-~~~~~~~~--------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 175 (425)
T 1r5m_A 105 GKTTNQVTCLAWSHDGNSIVTGVENGELRLWNK-TGALLNVL--------NFHRAPIVSVKWNKDGTHIISMDVENVTIL 175 (425)
T ss_dssp ---CBCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEE--------CCCCSCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred cCCCCceEEEEEcCCCCEEEEEeCCCeEEEEeC-CCCeeeec--------cCCCccEEEEEECCCCCEEEEEecCCeEEE
Confidence 6789999999999999999999999999994 33332222 245679999999999999999999999999
Q ss_pred EEccCcccceeecCcccccc-------------ceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccc
Q psy988 144 YDLRDLNLSCKYKGYVNVSS-------------QIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEG 210 (408)
Q Consensus 144 ~d~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 210 (408)
||+++++....+..+..... +.+++|++++ .+++++.+|.|++||+.++ .....
T Consensus 176 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~------------~~~~~ 242 (425)
T 1r5m_A 176 WNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEK------------TPTGK 242 (425)
T ss_dssp EETTTTEEEEEECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCS------------SCSEE
T ss_pred EECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCC------------ceeee
Confidence 99999988877766544311 6678899875 5888999999999999753 33345
Q ss_pred cccccceEEEEEEeCCcceeeeecCCC-------CCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCe
Q psy988 211 IKAHNAVVTCAVFAPCPELIIAQMEPD-------KSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLN 283 (408)
Q Consensus 211 ~~~~~~~v~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 283 (408)
+..|...+.+++|+|+++++++...+. ........+..+...+.+++|+|++ ++++++.|+.|++||+++++
T Consensus 243 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~ 321 (425)
T 1r5m_A 243 LIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNT 321 (425)
T ss_dssp ECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTE
T ss_pred eccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCc
Confidence 667889999999999999888765443 2344455667788999999999999 99999999999999999999
Q ss_pred eeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCcccccc--------ccCccccceeeeeecc--ceEE
Q psy988 284 LSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSV--------RRDRNDFWEGIKAHNA--VVTC 353 (408)
Q Consensus 284 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--------~~~~~~~~~~~~~h~~--~v~~ 353 (408)
.+..+..+.. .+.+++|+|++++|++++.||.|++|++.+........ .....+.+..+.+|.. .|++
T Consensus 322 ~~~~~~~~~~--~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 399 (425)
T 1r5m_A 322 LLALSIVDGV--PIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFD 399 (425)
T ss_dssp EEEEEECTTC--CEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEE
T ss_pred EeEecccCCc--cEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEE
Confidence 9988887655 78899999999999999999999999998763111100 0001126677888876 9999
Q ss_pred EEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCC
Q psy988 354 AVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNK 394 (408)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~ 394 (408)
++|+| ++++|++++.||.|++|+++
T Consensus 400 ~~~s~----------------~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 400 LSWNC----------------AGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EEECT----------------TSSEEEEEESSSCCEEEECC
T ss_pred EEccC----------------CCceEEEEecCceEEEEeec
Confidence 99999 99999999999999999986
No 19
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-46 Score=317.51 Aligned_cols=311 Identities=12% Similarity=0.175 Sum_probs=222.7
Q ss_pred cCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeee-cC-CceeeEEEEEecCCCEEEEEec
Q psy988 11 SRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEV-EG-QTKLITAANFCENGKFAVVGSY 87 (408)
Q Consensus 11 ~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~-~~-~~~~v~~~~~~~~~~~l~~~~~ 87 (408)
.+.+++..+. |.+.|++++|+| + +||+|+.|++|++|++..+.......+ .+ |...|.+++|+|++++|++++.
T Consensus 2 ~~~~~~~~~~~h~~~v~~~~~s~-~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~ 78 (330)
T 2hes_X 2 ASINLIKSLKLYKEKIWSFDFSQ-G--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSF 78 (330)
T ss_dssp -CCEEEEEEECCSSCEEEEEEET-T--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEET
T ss_pred cccccceeeccCCCceeeeccCC-C--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeC
Confidence 3456677776 999999999998 5 999999999999999987654433445 44 9999999999999999999999
Q ss_pred CCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCc----ccceeecCcccccc
Q psy988 88 DGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDL----NLSCKYKGYVNVSS 163 (408)
Q Consensus 88 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~~~ 163 (408)
|++|++|+++...... ..........+|...|.+++|+|++++|++++.|+.|++||++.. +.+..+.+|.. .
T Consensus 79 D~~v~iw~~~~~~~~~-~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~--~ 155 (330)
T 2hes_X 79 DSTVSIWAKEESADRT-FEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQ--D 155 (330)
T ss_dssp TSCEEEEEC--------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSS--C
T ss_pred CCcEEEEEcccCcCcc-ccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCC--c
Confidence 9999999986432100 000011112356789999999999999999999999999999532 34455666654 4
Q ss_pred ceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCce
Q psy988 164 QIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTG 243 (408)
Q Consensus 164 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (408)
+.+++|+|++++|++++.|+.|++||...+.. .++..+.+|...|.+++|+|++.
T Consensus 156 v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~----------~~~~~~~~h~~~v~~~~~~~~~~--------------- 210 (330)
T 2hes_X 156 VKHVIWHPSEALLASSSYDDTVRIWKDYDDDW----------ECVAVLNGHEGTVWSSDFDKTEG--------------- 210 (330)
T ss_dssp EEEEEECSSSSEEEEEETTSCEEEEEEETTEE----------EEEEEECCCSSCEEEEEECCSSS---------------
T ss_pred eEEEEECCCCCEEEEEcCCCeEEEEECCCCCe----------eEEEEccCCCCcEEEEEecCCCC---------------
Confidence 88999999999999999999999999854311 12233445555555555554321
Q ss_pred eeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCC--------eeeeEEeeccceeceeEEEEcCCCCEEEEecCC
Q psy988 244 YVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDL--------NLSCKYKGYVNVSSQIKASFSHDGKYIVSGSEN 315 (408)
Q Consensus 244 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 315 (408)
+..|++++.|++|++||+..+ .....+.. .+...|.+++|++++ +|++++.|
T Consensus 211 ------------------~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~v~~s~~~-~l~s~~~d 270 (330)
T 2hes_X 211 ------------------VFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPD-VHKRQVYNVAWGFNG-LIASVGAD 270 (330)
T ss_dssp ------------------SCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCS-CCSSCEEEEEECTTS-CEEEEETT
T ss_pred ------------------eeEEEEEeCCCeEEEEEecCCCccccceeEEeeeccc-ccccceEEEEEcCCC-EEEEEeCC
Confidence 456899999999999998754 22333332 133478999999765 89999999
Q ss_pred ceEEEeeccccCccccccccCccccceeeeeecc-ceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCC
Q psy988 316 QCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNA-VVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNK 394 (408)
Q Consensus 316 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~ 394 (408)
|.|++|+..++... .......+|.. .|.+++|+|.. ++++||+|+.||+|++|++.
T Consensus 271 g~v~iw~~~~~~~~---------~~~~~~~~h~~~~v~~v~~~~~~--------------~~~~las~s~Dg~v~~W~~~ 327 (330)
T 2hes_X 271 GVLAVYEEVDGEWK---------VFAKRALCHGVYEINVVKWLELN--------------GKTILATGGDDGIVNFWSLE 327 (330)
T ss_dssp SCEEEEEEETTEEE---------EEEEESCTTTTSCEEEEEEC-------------------CCEEEEETTSEEEEEEC-
T ss_pred CEEEEEEcCCCceE---------EEeccccccccceEEEEEEecCC--------------CceEEEEecCCCcEEEEEec
Confidence 99999998754110 11122356776 89999999821 36799999999999999987
Q ss_pred C
Q psy988 395 T 395 (408)
Q Consensus 395 ~ 395 (408)
.
T Consensus 328 ~ 328 (330)
T 2hes_X 328 K 328 (330)
T ss_dssp -
T ss_pred c
Confidence 5
No 20
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-46 Score=352.38 Aligned_cols=374 Identities=13% Similarity=0.137 Sum_probs=268.2
Q ss_pred CCceEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCC
Q psy988 1 MDKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGK 80 (408)
Q Consensus 1 ~Dg~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 80 (408)
.||+|+|||..+.+....+.|...|.+++|+| +++|++++.|++|++||+.+++.. ..+. |...|++++|+|+++
T Consensus 37 ~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp--g~~L~S~s~D~~v~lWd~~~~~~~--~~~~-~~~~V~~v~~sp~g~ 111 (902)
T 2oaj_A 37 VTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK--GIYLVVINAKDTVYVLSLYSQKVL--TTVF-VPGKITSIDTDASLD 111 (902)
T ss_dssp TTSEEEEECSTTCEEEEECSSCCCEEEEEEET--TTEEEEEETTCEEEEEETTTCSEE--EEEE-CSSCEEEEECCTTCS
T ss_pred CCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC--CCEEEEEECcCeEEEEECCCCcEE--EEEc-CCCCEEEEEECCCCC
Confidence 38999999999988887777999999999999 559999999999999999998766 4444 667899999999999
Q ss_pred EEEEEecCCEEEEEeccCCeeeEEEEEeec----cccccCCCCeEEEeeCCC-CCeEEEeeCCCeEEEEEccCcccceee
Q psy988 81 FAVVGSYDGRCIFYTTDQLKYHTQIHVRST----RGKNATGRKISGIEPMPG-EDKILVTSNDSRIRLYDLRDLNLSCKY 155 (408)
Q Consensus 81 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~ 155 (408)
+|++|+.||.|++||+++.+.. ....... .....|.+.|.+++|+|+ +..+++++.||.| +||+++++....+
T Consensus 112 ~l~sgs~dg~V~lwd~~~~~~~-~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~ 189 (902)
T 2oaj_A 112 WMLIGLQNGSMIVYDIDRDQLS-SFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSF 189 (902)
T ss_dssp EEEEEETTSCEEEEETTTTEEE-EEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEE
T ss_pred EEEEEcCCCcEEEEECCCCccc-cceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEE
Confidence 9999999999999999987653 2211110 223567789999999996 4688999999999 9999998887777
Q ss_pred cCcc----------------ccccceEEEEecCCCEEEEeecCceEEEeeeccceeeee-eccc-CCCccccc-cc---c
Q psy988 156 KGYV----------------NVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFS-SVRR-DRNDFWEG-IK---A 213 (408)
Q Consensus 156 ~~~~----------------~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~-~~~~~~~~-~~---~ 213 (408)
..+. +...+.+++|+|+|++|++++.||.|++||++++..... .... ........ .. .
T Consensus 190 ~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~ 269 (902)
T 2oaj_A 190 IYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSST 269 (902)
T ss_dssp CCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSS
T ss_pred ecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCcc
Confidence 6541 124588999999999999999999999999987654321 0000 00000000 00 1
Q ss_pred ccceEEEEEEe----CCcce-eeeecCCCCC-------------------------------------------------
Q psy988 214 HNAVVTCAVFA----PCPEL-IIAQMEPDKS------------------------------------------------- 239 (408)
Q Consensus 214 ~~~~v~~~~~~----~~~~~-~~~~~~~~~~------------------------------------------------- 239 (408)
+...|.+++|+ |++.. ++++..+...
T Consensus 270 ~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 349 (902)
T 2oaj_A 270 NAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNIL 349 (902)
T ss_dssp CCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEE
T ss_pred ccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEE
Confidence 34467777774 33322 2222111000
Q ss_pred ------------C-----------Cceee---------------------------------------------------
Q psy988 240 ------------E-----------STGYV--------------------------------------------------- 245 (408)
Q Consensus 240 ------------~-----------~~~~~--------------------------------------------------- 245 (408)
. .....
T Consensus 350 ~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~ 429 (902)
T 2oaj_A 350 PIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDY 429 (902)
T ss_dssp ECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCC
T ss_pred ECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCC
Confidence 0 00000
Q ss_pred -ecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeee--eEEee-------ccceeceeEEEEcCCCCEEEEecCC
Q psy988 246 -LNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLS--CKYKG-------YVNVSSQIKASFSHDGKYIVSGSEN 315 (408)
Q Consensus 246 -~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~-------~~~~~~v~~~~~s~~~~~l~~~~~d 315 (408)
+.++...+..++|+|++++|++|+.|++|++||+.++... ..+.. ..+...|.+++|+|||++||+|+.|
T Consensus 430 ~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~D 509 (902)
T 2oaj_A 430 LLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIET 509 (902)
T ss_dssp SCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETT
T ss_pred cccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecC
Confidence 0111223344677899999999999999999999887432 11210 0233479999999999999999999
Q ss_pred ceEEEeeccccCcccc-------c---------cc-----------------cCccccceeeeeeccceEEEEecCCchh
Q psy988 316 QCIYIWKTHHDYAKFS-------S---------VR-----------------RDRNDFWEGIKAHNAVVTCAVFAPCPEL 362 (408)
Q Consensus 316 g~i~iw~~~~~~~~~~-------~---------~~-----------------~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 362 (408)
|+|+||++.++..... . +. +...+++..+.+|.+.|++++|+|
T Consensus 510 gtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSp---- 585 (902)
T 2oaj_A 510 GDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSN---- 585 (902)
T ss_dssp SCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECB----
T ss_pred cEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecC----
Confidence 9999999987631000 0 00 000134667888999999999999
Q ss_pred hhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCCC
Q psy988 363 IIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKPK 398 (408)
Q Consensus 363 ~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 398 (408)
|| +||+|+.||+|++||+.++..
T Consensus 586 ------------dG-~lAsgs~D~tv~lwd~~~~~~ 608 (902)
T 2oaj_A 586 ------------IG-FVGIAYAAGSLMLIDRRGPAI 608 (902)
T ss_dssp ------------TS-EEEEEETTSEEEEEETTTTEE
T ss_pred ------------Cc-EEEEEeCCCcEEEEECCCCeE
Confidence 99 999999999999999877543
No 21
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=5.4e-46 Score=366.86 Aligned_cols=367 Identities=18% Similarity=0.292 Sum_probs=294.6
Q ss_pred CCceEEEEeccCCeeEeEEE-eCCceEEEEEcCC-CCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecC
Q psy988 1 MDKTVRLWHISRKECLCCFQ-HIDFVTAICFHPR-DDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCEN 78 (408)
Q Consensus 1 ~Dg~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~-~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 78 (408)
.||+|+|||+.+++++..+. |...|.+++|+|+ ++.++++|+.||.|++||+.+++.. ..+.+|...|.+++|+|+
T Consensus 677 ~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~--~~~~~h~~~v~~~~~sp~ 754 (1249)
T 3sfz_A 677 ADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECR--NTMFGHTNSVNHCRFSPD 754 (1249)
T ss_dssp TTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEE--EEECCCSSCEEEEEECSS
T ss_pred CCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchh--heecCCCCCEEEEEEecC
Confidence 38999999999999999987 9999999999993 3458999999999999999998866 688899999999999999
Q ss_pred CCEEEEEecCCEEEEEeccCCeeeEEEEEeec-----------------------------------------------c
Q psy988 79 GKFAVVGSYDGRCIFYTTDQLKYHTQIHVRST-----------------------------------------------R 111 (408)
Q Consensus 79 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-----------------------------------------------~ 111 (408)
++++++++.||.|++||+.+.+.......... .
T Consensus 755 ~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~ 834 (1249)
T 3sfz_A 755 DELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAE 834 (1249)
T ss_dssp TTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEE
T ss_pred CCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeE
Confidence 99999999999999999988765444321110 0
Q ss_pred ccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeec
Q psy988 112 GKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTH 191 (408)
Q Consensus 112 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 191 (408)
....|...+.+++|+|+++.+++++.+|.|++||+.++.....+.+|... +.+++|+|++++|++++.||.|++||+.
T Consensus 835 ~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~--v~~v~~spdg~~l~s~s~dg~v~vw~~~ 912 (1249)
T 3sfz_A 835 IHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSW--VHGVMFSPDGSSFLTASDDQTIRVWETK 912 (1249)
T ss_dssp EECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSC--EEEEEECTTSSEEEEEETTSCEEEEEHH
T ss_pred EcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccc--eEEEEECCCCCEEEEEeCCCeEEEEEcc
Confidence 01256778999999999999999999999999999999888888877654 8899999999999999999999999975
Q ss_pred cceeee-------------------------------------------------------------------eecccCC
Q psy988 192 HDYAKF-------------------------------------------------------------------SSVRRDR 204 (408)
Q Consensus 192 ~~~~~~-------------------------------------------------------------------~~~~~~~ 204 (408)
...... .......
T Consensus 913 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~ 992 (1249)
T 3sfz_A 913 KVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPN 992 (1249)
T ss_dssp HHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTT
T ss_pred ccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCC
Confidence 321000 0000011
Q ss_pred CccccccccccceEEEEEEeCCcceeeeecCCCC------CCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEE
Q psy988 205 NDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDK------SESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYD 278 (408)
Q Consensus 205 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d 278 (408)
......+.+|...|.+++|+|++++++++..+.. ..........+...+.+++++|++ .+++++.|+.|++||
T Consensus 993 ~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd 1071 (1249)
T 3sfz_A 993 NRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWN 1071 (1249)
T ss_dssp TSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSS-EEEEEESSSEEEEEE
T ss_pred CceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCC-cEEEEECCCcEEEEE
Confidence 2233445567777888888888887776654332 111222344667778888888855 466777888888888
Q ss_pred cCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecC
Q psy988 279 LRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAP 358 (408)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 358 (408)
+.+++....+.+|.. .+.+++|+|++++|++++.||.|++||+.++ ..+..+.+|.+.|++++|+|
T Consensus 1072 ~~~~~~~~~~~~~~~--~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~------------~~~~~l~~h~~~v~~~~~s~ 1137 (1249)
T 3sfz_A 1072 VITGRIERDFTCHQG--TVLSCAISSDATKFSSTSADKTAKIWSFDLL------------SPLHELKGHNGCVRCSAFSL 1137 (1249)
T ss_dssp TTTTCCCEEEECCSS--CCCCEEECSSSSSCEEECCSSCCCEECSSSS------------SCSBCCCCCSSCEEEEEECS
T ss_pred CCCCceeEEEcccCC--cEEEEEECCCCCEEEEEcCCCcEEEEECCCc------------ceeeeeccCCCcEEEEEECC
Confidence 888888888877665 7889999999999999999999999999876 56677889999999999999
Q ss_pred CchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCCCcccc
Q psy988 359 CPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKPKHSSL 402 (408)
Q Consensus 359 ~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 402 (408)
+|++|++++.||.|++||+.+++....+
T Consensus 1138 ----------------dg~~lat~~~dg~i~vwd~~~~~~~~~~ 1165 (1249)
T 3sfz_A 1138 ----------------DGILLATGDDNGEIRIWNVSDGQLLHSC 1165 (1249)
T ss_dssp ----------------SSSEEEEEETTSCCCEEESSSSCCCCCC
T ss_pred ----------------CCCEEEEEeCCCEEEEEECCCCceEEEe
Confidence 9999999999999999999998866544
No 22
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-47 Score=334.33 Aligned_cols=330 Identities=9% Similarity=0.137 Sum_probs=256.5
Q ss_pred CceEEEEeccCCe---eEeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCC--CceeeeeecCCceeeEEEEEe
Q psy988 2 DKTVRLWHISRKE---CLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDK--KVAVWNEVEGQTKLITAANFC 76 (408)
Q Consensus 2 Dg~i~vwd~~~~~---~~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~--~~~~~~~~~~~~~~v~~~~~~ 76 (408)
|+.|+|||+.+++ ++..+.|...|++++|+| ++++|++++.||.|++|++.+. .......+.+|...|.+++|+
T Consensus 44 d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 122 (416)
T 2pm9_A 44 DSSLELWSLLAADSEKPIASLQVDSKFNDLDWSH-NNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFN 122 (416)
T ss_dssp CCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECS-SSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEEC
T ss_pred CCeEEEEEccCCCCCcEEEEEecCCceEEEEECC-CCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEc
Confidence 7899999999875 556667999999999999 9999999999999999999872 112336788999999999999
Q ss_pred cC-CCEEEEEecCCEEEEEeccCCeeeEE-EEEeeccccccCCCCeEEEeeCCC-CCeEEEeeCCCeEEEEEccCcccce
Q psy988 77 EN-GKFAVVGSYDGRCIFYTTDQLKYHTQ-IHVRSTRGKNATGRKISGIEPMPG-EDKILVTSNDSRIRLYDLRDLNLSC 153 (408)
Q Consensus 77 ~~-~~~l~~~~~dg~i~iw~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~ 153 (408)
|+ +++|++++.||.|++||+.+.+.... ...........|...|.+++|+|+ +..|++++.||.|++||+++++...
T Consensus 123 ~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~ 202 (416)
T 2pm9_A 123 AKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVI 202 (416)
T ss_dssp SSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEE
T ss_pred CCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcce
Confidence 98 89999999999999999988751000 001111223456779999999998 7889999999999999999998887
Q ss_pred eecCccc----cccceEEEEecCC-CEEEEeecCc---eEEEeeeccceeeeeecccCCCccccccc-cccceEEEEEEe
Q psy988 154 KYKGYVN----VSSQIKASFSHDG-KYIVSGSENQ---CIYIWKTHHDYAKFSSVRRDRNDFWEGIK-AHNAVVTCAVFA 224 (408)
Q Consensus 154 ~~~~~~~----~~~~~~~~~~~~~-~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~ 224 (408)
.+..+.. ...+.+++|+|++ .++++++.|+ .|++||+++.. .....+. .|...+.
T Consensus 203 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~-----------~~~~~~~~~~~~~v~----- 266 (416)
T 2pm9_A 203 HLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN-----------TPLQTLNQGHQKGIL----- 266 (416)
T ss_dssp EECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT-----------SCSBCCCSCCSSCEE-----
T ss_pred EEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC-----------CCcEEeecCccCcee-----
Confidence 7766531 3558899999997 6899999998 99999997531 1222333 4444444
Q ss_pred CCcceeeeecCCCCCCCceeeecCCCceeeeeccCC-CCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEc
Q psy988 225 PCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMP-GEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFS 303 (408)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s 303 (408)
+++|+| ++++|++++.|+.|++||+++++.+..+..|.. .+.+++|+
T Consensus 267 ------------------------------~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~--~v~~~~~s 314 (416)
T 2pm9_A 267 ------------------------------SLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGN--WCFKTKFA 314 (416)
T ss_dssp ------------------------------EEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSS--CCCCEEEC
T ss_pred ------------------------------EEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCC--ceEEEEEC
Confidence 455555 566789999999999999999999999988765 78899999
Q ss_pred CCC-CEEEEecCCceEEEeeccccCccccccc-----cCccc------------------cceeeeeeccceEEEEecCC
Q psy988 304 HDG-KYIVSGSENQCIYIWKTHHDYAKFSSVR-----RDRND------------------FWEGIKAHNAVVTCAVFAPC 359 (408)
Q Consensus 304 ~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~-----~~~~~------------------~~~~~~~h~~~v~~~~~~~~ 359 (408)
|++ ++|++++.||.|++|++........... ..... .+.....|..++.+++|+|
T Consensus 315 ~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~- 393 (416)
T 2pm9_A 315 PEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAF- 393 (416)
T ss_dssp TTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEET-
T ss_pred CCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEee-
Confidence 999 8999999999999999987653322100 00000 0011122667788999999
Q ss_pred chhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCC
Q psy988 360 PELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTK 396 (408)
Q Consensus 360 ~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 396 (408)
+|++|++++.||.|+||++.+.
T Consensus 394 ---------------dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 394 ---------------GGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp ---------------TTEEECBCTTSSCBCCBCCCCC
T ss_pred ---------------CCeEEEEeCCCCeEEEEEeccC
Confidence 9999999999999999999875
No 23
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-46 Score=352.53 Aligned_cols=372 Identities=11% Similarity=0.066 Sum_probs=264.5
Q ss_pred CCceEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceee---------eeecCCceeeE
Q psy988 1 MDKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW---------NEVEGQTKLIT 71 (408)
Q Consensus 1 ~Dg~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~---------~~~~~~~~~v~ 71 (408)
.|++|+|||+.+++++..+.|.+.|++++|+| ++++|++|+.||.|++||+.+++.... ..+.+|...|.
T Consensus 77 ~D~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp-~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~ 155 (902)
T 2oaj_A 77 AKDTVYVLSLYSQKVLTTVFVPGKITSIDTDA-SLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIV 155 (902)
T ss_dssp TTCEEEEEETTTCSEEEEEECSSCEEEEECCT-TCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCC
T ss_pred CcCeEEEEECCCCcEEEEEcCCCCEEEEEECC-CCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeE
Confidence 38999999999999999999999999999999 999999999999999999998765321 23467999999
Q ss_pred EEEEecC-CCEEEEEecCCEEEEEeccCCeeeEEEEEeec----------cccccCCCCeEEEeeCCCCCeEEEeeCCCe
Q psy988 72 AANFCEN-GKFAVVGSYDGRCIFYTTDQLKYHTQIHVRST----------RGKNATGRKISGIEPMPGEDKILVTSNDSR 140 (408)
Q Consensus 72 ~~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~----------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 140 (408)
+++|+|+ +..+++++.||.| +||+++.+....+..... .....|...|.+++|+|++.+|++++.||.
T Consensus 156 sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~ 234 (902)
T 2oaj_A 156 SIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNS 234 (902)
T ss_dssp EEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCC
T ss_pred EEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCe
Confidence 9999996 5789999999999 999998876544332100 011234568999999999999999999999
Q ss_pred EEEEEccCccccee--ec---Ccc-----------ccccceEEEEec----CC-CEEEEeecC-----ceEEEeeeccc-
Q psy988 141 IRLYDLRDLNLSCK--YK---GYV-----------NVSSQIKASFSH----DG-KYIVSGSEN-----QCIYIWKTHHD- 193 (408)
Q Consensus 141 i~i~d~~~~~~~~~--~~---~~~-----------~~~~~~~~~~~~----~~-~~l~~~~~d-----g~i~i~d~~~~- 193 (408)
|++||+++++++.. +. .+. ....+.+++|++ ++ ..|++|+.+ ..+.+|++...
T Consensus 235 i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~ 314 (902)
T 2oaj_A 235 LVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTP 314 (902)
T ss_dssp EEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECC
T ss_pred EEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCC
Confidence 99999998876543 21 121 123477888854 33 456666554 26777763200
Q ss_pred -------------------eeeee---------e--cc---------c-------------------CCCccc-------
Q psy988 194 -------------------YAKFS---------S--VR---------R-------------------DRNDFW------- 208 (408)
Q Consensus 194 -------------------~~~~~---------~--~~---------~-------------------~~~~~~------- 208 (408)
..... . .. . ..+...
T Consensus 315 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~ 394 (902)
T 2oaj_A 315 RYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFP 394 (902)
T ss_dssp CGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSC
T ss_pred CccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCC
Confidence 00000 0 00 0 000000
Q ss_pred ----------------------------------cccccccceEEEEEEeCCcceeeeecCCCC-------CCCce--ee
Q psy988 209 ----------------------------------EGIKAHNAVVTCAVFAPCPELIIAQMEPDK-------SESTG--YV 245 (408)
Q Consensus 209 ----------------------------------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-------~~~~~--~~ 245 (408)
..+.+|...+.+++|+|+++.++++..+.. ..... ..
T Consensus 395 ~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~ 474 (902)
T 2oaj_A 395 QNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNAS 474 (902)
T ss_dssp GGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBC
T ss_pred CcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCce
Confidence 011223333344556788888887644432 11100 11
Q ss_pred e---------cCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCe---------------------------------
Q psy988 246 L---------NATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLN--------------------------------- 283 (408)
Q Consensus 246 ~---------~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--------------------------------- 283 (408)
+ ..|...|.+++|+|++++||+|+.||+|+|||+.+++
T Consensus 475 ~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (902)
T 2oaj_A 475 FEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVR 554 (902)
T ss_dssp EEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECG
T ss_pred EEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCcccccccc
Confidence 1 1677899999999999999999999999999997652
Q ss_pred ------------eeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeee-eeccc
Q psy988 284 ------------LSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIK-AHNAV 350 (408)
Q Consensus 284 ------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~ 350 (408)
++..+.+|.. .|++++||||| +||+|+.|++|++||+.+...... ..+..+. +|.+.
T Consensus 555 ~~~~~~~~~g~~~~~~l~~h~~--~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~-------~~~~~~~~gh~~~ 624 (902)
T 2oaj_A 555 DRAPTGVRQGFMPSTAVHANKG--KTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYM-------ENIREISGAQSAC 624 (902)
T ss_dssp GGCCTTCSEEEEEEEEECCCSC--SEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEE-------EEGGGTCSSCCCC
T ss_pred ccCCCCCCCccceeEEEEcCCC--cEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEE-------eehhHhccccccc
Confidence 3455666544 89999999999 999999999999999876421100 0113344 89999
Q ss_pred eEEEEec-----CCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeC---CCCC
Q psy988 351 VTCAVFA-----PCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLN---KTKP 397 (408)
Q Consensus 351 v~~~~~~-----~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~---~~~~ 397 (408)
|++++|+ |||. ++++|++|+.||+|++|++ .+++
T Consensus 625 V~sv~Fs~~~~~~Dg~-------------~~~~l~sgs~D~tv~~wd~~p~~~g~ 666 (902)
T 2oaj_A 625 VTCIEFVIMEYGDDGY-------------SSILMVCGTDMGEVITYKILPASGGK 666 (902)
T ss_dssp EEEEEEEEEECTTSSS-------------EEEEEEEEETTSEEEEEEEEECGGGC
T ss_pred eEEEEEEEEecCCCCC-------------cceEEEEEecCCcEEEEEEecCCCCc
Confidence 9999999 8321 3589999999999999999 5555
No 24
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.4e-45 Score=309.48 Aligned_cols=262 Identities=17% Similarity=0.280 Sum_probs=225.3
Q ss_pred CCceEEEEeccCCeeEe--EEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEec
Q psy988 1 MDKTVRLWHISRKECLC--CFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCE 77 (408)
Q Consensus 1 ~Dg~i~vwd~~~~~~~~--~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~ 77 (408)
.|++|+|||+.+++... .+. |...|.+++|+| ++.++++++.|++|++||+.+++.. ..+..|...+.+++|+|
T Consensus 56 ~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~-~~~~l~s~s~D~~i~lWd~~~~~~~--~~~~~~~~~~~~~~~sp 132 (321)
T 3ow8_A 56 LDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISH-TLPIAASSSLDAHIRLWDLENGKQI--KSIDAGPVDAWTLAFSP 132 (321)
T ss_dssp TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEE--EEEECCTTCCCCEEECT
T ss_pred CCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECC-CCCEEEEEeCCCcEEEEECCCCCEE--EEEeCCCccEEEEEECC
Confidence 48999999998876543 344 999999999999 9999999999999999999998766 67788888999999999
Q ss_pred CCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecC
Q psy988 78 NGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKG 157 (408)
Q Consensus 78 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 157 (408)
++++|++++.||.|++|++++.+...... .+...+.+++|+|++++|++++.||.|++||+++++.+..+.+
T Consensus 133 dg~~l~~g~~dg~v~i~~~~~~~~~~~~~--------~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~ 204 (321)
T 3ow8_A 133 DSQYLATGTHVGKVNIFGVESGKKEYSLD--------TRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEG 204 (321)
T ss_dssp TSSEEEEECTTSEEEEEETTTCSEEEEEE--------CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred CCCEEEEEcCCCcEEEEEcCCCceeEEec--------CCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcc
Confidence 99999999999999999999877644332 3446899999999999999999999999999999998888887
Q ss_pred ccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCC
Q psy988 158 YVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPD 237 (408)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 237 (408)
|... +.+++|+|++++|++++.|+.|++||++... ....+.
T Consensus 205 h~~~--v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~------------~~~~~~------------------------- 245 (321)
T 3ow8_A 205 HAMP--IRSLTFSPDSQLLVTASDDGYIKIYDVQHAN------------LAGTLS------------------------- 245 (321)
T ss_dssp CSSC--CCEEEECTTSCEEEEECTTSCEEEEETTTCC------------EEEEEC-------------------------
T ss_pred cCCc--eeEEEEcCCCCEEEEEcCCCeEEEEECCCcc------------eeEEEc-------------------------
Confidence 7654 7789999999999999999999999986532 112233
Q ss_pred CCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCce
Q psy988 238 KSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQC 317 (408)
Q Consensus 238 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 317 (408)
.|...|.+++|+|++++|++++.|++|++||+++++++..+.+|.. .|.+++|+|++++|++++.||.
T Consensus 246 ----------~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~--~v~~v~~s~~g~~l~s~~~d~~ 313 (321)
T 3ow8_A 246 ----------GHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQD--QVWGVKYNGNGSKIVSVGDDQE 313 (321)
T ss_dssp ----------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS--CEEEEEECTTSSEEEEEETTCC
T ss_pred ----------CCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCC--cEEEEEECCCCCEEEEEeCCCe
Confidence 3445556666666777789999999999999999999999988765 7899999999999999999999
Q ss_pred EEEeecc
Q psy988 318 IYIWKTH 324 (408)
Q Consensus 318 i~iw~~~ 324 (408)
|++||..
T Consensus 314 i~vwd~p 320 (321)
T 3ow8_A 314 IHIYDCP 320 (321)
T ss_dssp EEEEECC
T ss_pred EEEEeCC
Confidence 9999963
No 25
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=6.2e-46 Score=322.62 Aligned_cols=261 Identities=18% Similarity=0.339 Sum_probs=227.2
Q ss_pred CCceEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCC
Q psy988 1 MDKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENG 79 (408)
Q Consensus 1 ~Dg~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 79 (408)
.||+|+|||+.+++....+. |.+.|++++|+| ++++|++|+.|++|++||+.+++.. ..+.+|...|.+++|+|++
T Consensus 128 ~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~-~~~~l~sgs~D~~i~iwd~~~~~~~--~~~~~h~~~V~~v~~~p~~ 204 (410)
T 1vyh_C 128 EDATIKVWDYETGDFERTLKGHTDSVQDISFDH-SGKLLASCSADMTIKLWDFQGFECI--RTMHGHDHNVSSVSIMPNG 204 (410)
T ss_dssp SSSCEEEEETTTCCCCEEECCCSSCEEEEEECT-TSSEEEEEETTSCCCEEETTSSCEE--ECCCCCSSCEEEEEECSSS
T ss_pred CCCeEEEEECCCCcEEEEEeccCCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCcee--EEEcCCCCCEEEEEEeCCC
Confidence 38999999999999998887 999999999999 9999999999999999999888765 6889999999999999999
Q ss_pred CEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCcc
Q psy988 80 KFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV 159 (408)
Q Consensus 80 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 159 (408)
++|++++.|++|++||++++.....+. .|...|.++.++|++.+|++++.|+.|++||+++++....+..|.
T Consensus 205 ~~l~s~s~D~~i~~wd~~~~~~~~~~~--------~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~ 276 (410)
T 1vyh_C 205 DHIVSASRDKTIKMWEVQTGYCVKTFT--------GHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHR 276 (410)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEEEEE--------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCS
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEEe--------CCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCC
Confidence 999999999999999999887654432 456789999999999999999999999999999998888887776
Q ss_pred ccccceEEEEecC--------------------CCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEE
Q psy988 160 NVSSQIKASFSHD--------------------GKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVT 219 (408)
Q Consensus 160 ~~~~~~~~~~~~~--------------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 219 (408)
.. +.+++|+|+ +.+|++|+.|+.|++||++++.. +..+.+|
T Consensus 277 ~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~------------~~~~~~h----- 337 (410)
T 1vyh_C 277 HV--VECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC------------LMTLVGH----- 337 (410)
T ss_dssp SC--EEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEE------------EEEEECC-----
T ss_pred ce--EEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCce------------EEEEECC-----
Confidence 54 778999986 67899999999999999975422 2223334
Q ss_pred EEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeE
Q psy988 220 CAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIK 299 (408)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~ 299 (408)
...|.+++|+|++++|++++.|+.|++||+.+++++..+.+|.. .|.+
T Consensus 338 ------------------------------~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~--~v~~ 385 (410)
T 1vyh_C 338 ------------------------------DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH--FVTS 385 (410)
T ss_dssp ------------------------------SSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSS--CEEE
T ss_pred ------------------------------CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCC--cEEE
Confidence 44455555666677789999999999999999999999988766 7999
Q ss_pred EEEcCCCCEEEEecCCceEEEeec
Q psy988 300 ASFSHDGKYIVSGSENQCIYIWKT 323 (408)
Q Consensus 300 ~~~s~~~~~l~~~~~dg~i~iw~~ 323 (408)
++|+|++.+|++|+.||.|++|++
T Consensus 386 l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 386 LDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp EEECSSSSCEEEEETTSEEEEEC-
T ss_pred EEEcCCCCEEEEEeCCCcEEEEeC
Confidence 999999999999999999999986
No 26
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=7e-46 Score=366.10 Aligned_cols=364 Identities=18% Similarity=0.241 Sum_probs=287.8
Q ss_pred CceEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEec--C
Q psy988 2 DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCE--N 78 (408)
Q Consensus 2 Dg~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~--~ 78 (408)
||+|+|||+.+++.+..+. |.+.|.+++|+| ++++|++++.||.|++||+.+++.. ..+.+|...|.+++|+| +
T Consensus 636 d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~v~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~ 712 (1249)
T 3sfz_A 636 DKTLQVFKAETGEKLLDIKAHEDEVLCCAFSS-DDSYIATCSADKKVKIWDSATGKLV--HTYDEHSEQVNCCHFTNKSN 712 (1249)
T ss_dssp TSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEE--EEEECCSSCEEEEEECSSSS
T ss_pred CCeEEEEECCCCCEEEEeccCCCCEEEEEEec-CCCEEEEEeCCCeEEEEECCCCceE--EEEcCCCCcEEEEEEecCCC
Confidence 8999999999999999887 999999999999 9999999999999999999998876 68889999999999999 5
Q ss_pred CCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCc
Q psy988 79 GKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGY 158 (408)
Q Consensus 79 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 158 (408)
+.++++++.||.|++||+.+++..... .+|...|.+++|+|+++.+++++.||.|++||+++++....+...
T Consensus 713 ~~~l~sg~~d~~v~vwd~~~~~~~~~~--------~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~ 784 (1249)
T 3sfz_A 713 HLLLATGSNDFFLKLWDLNQKECRNTM--------FGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVK 784 (1249)
T ss_dssp CCEEEEEETTSCEEEEETTSSSEEEEE--------CCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECC
T ss_pred ceEEEEEeCCCeEEEEECCCcchhhee--------cCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceeccc
Confidence 568999999999999999988754433 246679999999999999999999999999999876544332110
Q ss_pred -----------------------------------------------------cccccceEEEEecCCCEEEEeecCceE
Q psy988 159 -----------------------------------------------------VNVSSQIKASFSHDGKYIVSGSENQCI 185 (408)
Q Consensus 159 -----------------------------------------------------~~~~~~~~~~~~~~~~~l~~~~~dg~i 185 (408)
.+...+.+++|+|+++++++++.||.|
T Consensus 785 ~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v 864 (1249)
T 3sfz_A 785 RFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCV 864 (1249)
T ss_dssp CCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCE
T ss_pred ccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeE
Confidence 122346677888888888888888888
Q ss_pred EEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCC------------------------
Q psy988 186 YIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSES------------------------ 241 (408)
Q Consensus 186 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~------------------------ 241 (408)
++||+.++. ....+.+|...|.+++|+|+++.+++...+.....
T Consensus 865 ~vwd~~~~~------------~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~ 932 (1249)
T 3sfz_A 865 ELWNIDSRL------------KVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQE 932 (1249)
T ss_dssp EEEETTTTE------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEET
T ss_pred EEEEcCCCc------------eeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcC
Confidence 888886543 33556789999999999999999887754432100
Q ss_pred --------------------ceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEE
Q psy988 242 --------------------TGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKAS 301 (408)
Q Consensus 242 --------------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~ 301 (408)
...........+.+++++|+++++++|+.+|.|++||+.+++....+.+|.. .|.+++
T Consensus 933 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~--~v~~l~ 1010 (1249)
T 3sfz_A 933 NETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKK--AVRHIQ 1010 (1249)
T ss_dssp TEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSS--CCCCEE
T ss_pred CCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCC--ceEEEE
Confidence 0001112345689999999999999999999999999999998888887765 788999
Q ss_pred EcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCC-----------
Q psy988 302 FSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPD----------- 370 (408)
Q Consensus 302 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~----------- 370 (408)
|+|+|++|++++.||.|++|++.++.. ..+.+|...|.+++|+|++.+++.+....
T Consensus 1011 ~s~dg~~l~s~~~dg~i~vwd~~~~~~-------------~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~ 1077 (1249)
T 3sfz_A 1011 FTADGKTLISSSEDSVIQVWNWQTGDY-------------VFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRI 1077 (1249)
T ss_dssp ECSSSSCEEEECSSSBEEEEETTTTEE-------------ECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCC
T ss_pred ECCCCCEEEEEcCCCEEEEEECCCCce-------------EEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCce
Confidence 999999999999999999999987522 12334555566666665444332221110
Q ss_pred --------------CCCCcccEEEEEecCCeEEEEeCCCCCCccccc
Q psy988 371 --------------KSESTGYVLVSADFNGVIRVFLNKTKPKHSSLP 403 (408)
Q Consensus 371 --------------~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~ 403 (408)
++++++++|++++.||.|++|++.+++....+.
T Consensus 1078 ~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~ 1124 (1249)
T 3sfz_A 1078 ERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELK 1124 (1249)
T ss_dssp CEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCC
T ss_pred eEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeec
Confidence 345599999999999999999998877655543
No 27
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=2.9e-45 Score=316.80 Aligned_cols=303 Identities=17% Similarity=0.179 Sum_probs=241.6
Q ss_pred EeccCCeeEeEEE-eCCceEEEEEcCCCC-CEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEec-CCCEEEE
Q psy988 8 WHISRKECLCCFQ-HIDFVTAICFHPRDD-RYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCE-NGKFAVV 84 (408)
Q Consensus 8 wd~~~~~~~~~~~-h~~~v~~~~~sp~~~-~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~ 84 (408)
|++.+.+....+. |.+.|++++|+| ++ ++|++|+.||.|++||+.+++........+|...|.+++|+| ++++|++
T Consensus 58 ~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 136 (383)
T 3ei3_B 58 RSLKSYKLHRTASPFDRRVTSLEWHP-THPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFV 136 (383)
T ss_dssp HHHTTCEEEEEECCCSSCEEEEEECS-SCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEE
T ss_pred ccccccceEEeccCCCCCEEEEEECC-CCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEE
Confidence 4455667777776 999999999999 77 999999999999999999888775444557999999999999 7899999
Q ss_pred EecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccc
Q psy988 85 GSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQ 164 (408)
Q Consensus 85 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 164 (408)
++.|+.|++||+.+... ........+...|.+++|+|++++|++++.|+.|++||+ +++....+..|.. .+
T Consensus 137 ~~~d~~i~iwd~~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~--~v 207 (383)
T 3ei3_B 137 SSIRGATTLRDFSGSVI------QVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKA--KV 207 (383)
T ss_dssp EETTTEEEEEETTSCEE------EEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSS--CE
T ss_pred EeCCCEEEEEECCCCce------EEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCC--cE
Confidence 99999999999986332 122223345578999999999999999999999999999 4666777776654 48
Q ss_pred eEEEEecCCC-EEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCce
Q psy988 165 IKASFSHDGK-YIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTG 243 (408)
Q Consensus 165 ~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (408)
.+++|+|+++ +|++++.|+.|++||+++.... ......+
T Consensus 208 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~--------~~~~~~~-------------------------------- 247 (383)
T 3ei3_B 208 THAEFNPRCDWLMATSSVDATVKLWDLRNIKDK--------NSYIAEM-------------------------------- 247 (383)
T ss_dssp EEEEECSSCTTEEEEEETTSEEEEEEGGGCCST--------TCEEEEE--------------------------------
T ss_pred EEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcc--------cceEEEe--------------------------------
Confidence 8999999999 8999999999999999752110 0011111
Q ss_pred eeecCCCceeeeeccCC-CCCeEEEecCCCeEEEEEcCCCeeeeEEeeccce---------------eceeEEEEcCCCC
Q psy988 244 YVLNATGRKISGIEPMP-GEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNV---------------SSQIKASFSHDGK 307 (408)
Q Consensus 244 ~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~---------------~~v~~~~~s~~~~ 307 (408)
.+...|.+++|+| ++++|++++.|+.|++||+++++....+..+... ..+..++|+|+++
T Consensus 248 ----~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~ 323 (383)
T 3ei3_B 248 ----PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQ 323 (383)
T ss_dssp ----ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTT
T ss_pred ----cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCcc
Confidence 3445666677777 7788899999999999999998887777755321 2344567777777
Q ss_pred EEEEecCCceEEEeeccccCccccccccCccccceeeee--eccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecC
Q psy988 308 YIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKA--HNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFN 385 (408)
Q Consensus 308 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d 385 (408)
+ +|+.||.|++||+.++ +.+..+.+ |...+..++|+| ++++|++|+ |
T Consensus 324 ~--s~s~d~~i~iwd~~~~------------~~~~~l~~~~~~~~~~~~~~s~----------------~g~~l~s~s-d 372 (383)
T 3ei3_B 324 L--LLNDKRTIDIYDANSG------------GLVHQLRDPNAAGIISLNKFSP----------------TGDVLASGM-G 372 (383)
T ss_dssp T--CTTCCCCEEEEETTTC------------CEEEEECBTTBCSCCCEEEECT----------------TSSEEEEEE-T
T ss_pred c--ccCCCCeEEEEecCCC------------ceeeeecCCCCCceEEEEEEec----------------CccEEEEec-C
Confidence 7 7889999999999887 55666766 567788889999 999999997 9
Q ss_pred CeEEEEeCCC
Q psy988 386 GVIRVFLNKT 395 (408)
Q Consensus 386 g~v~iw~~~~ 395 (408)
|.|++|++++
T Consensus 373 ~~i~iw~~~~ 382 (383)
T 3ei3_B 373 FNILIWNRED 382 (383)
T ss_dssp TEEEEEECC-
T ss_pred CcEEEEecCC
Confidence 9999999875
No 28
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.1e-44 Score=308.12 Aligned_cols=305 Identities=15% Similarity=0.219 Sum_probs=232.6
Q ss_pred eeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCc---eeeeeecCCceeeEEEEEecCCCEEEEEecCC
Q psy988 14 ECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKV---AVWNEVEGQTKLITAANFCENGKFAVVGSYDG 89 (408)
Q Consensus 14 ~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 89 (408)
++..++. |.+.|++|+|+|+++++||||+.||+|+|||+.+.+. .....+.+|...|.+++|+|++++|++++.|+
T Consensus 29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~ 108 (340)
T 4aow_A 29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDG 108 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccc
Confidence 4445565 9999999999995578999999999999999987553 23467889999999999999999999999999
Q ss_pred EEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccce-eecCccccccceEEE
Q psy988 90 RCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSC-KYKGYVNVSSQIKAS 168 (408)
Q Consensus 90 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~ 168 (408)
.|++|+........... .+...+..+.++++++.|++++.|+.+++||+....... ....+. ..+..++
T Consensus 109 ~i~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~--~~v~~~~ 178 (340)
T 4aow_A 109 TLRLWDLTTGTTTRRFV--------GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHS--EWVSCVR 178 (340)
T ss_dssp EEEEEETTTTEEEEEEE--------CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCS--SCEEEEE
T ss_pred cceEEeecccceeeeec--------CCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEecccc--CcccceE
Confidence 99999999876554433 233578889999999999999999999999987654332 223333 4466778
Q ss_pred EecCC--CEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeee
Q psy988 169 FSHDG--KYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVL 246 (408)
Q Consensus 169 ~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (408)
|++++ .++++++.|+.|++||+++... ...+.+
T Consensus 179 ~~~~~~~~~~~s~~~d~~i~i~d~~~~~~------------~~~~~~--------------------------------- 213 (340)
T 4aow_A 179 FSPNSSNPIIVSCGWDKLVKVWNLANCKL------------KTNHIG--------------------------------- 213 (340)
T ss_dssp ECSCSSSCEEEEEETTSCEEEEETTTTEE------------EEEECC---------------------------------
T ss_pred EccCCCCcEEEEEcCCCEEEEEECCCCce------------eeEecC---------------------------------
Confidence 87754 5688999999999999875422 122333
Q ss_pred cCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeecccc
Q psy988 247 NATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHD 326 (408)
Q Consensus 247 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 326 (408)
|...|.+++|+|++++|++++.|+.|++||+++.+.+..+..+ ..+.+++|+|++.++ +++.|+.|++||++..
T Consensus 214 --h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~---~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~ 287 (340)
T 4aow_A 214 --HTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG---DIINALCFSPNRYWL-CAATGPSIKIWDLEGK 287 (340)
T ss_dssp --CSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS---SCEEEEEECSSSSEE-EEEETTEEEEEETTTT
T ss_pred --CCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC---ceEEeeecCCCCcee-eccCCCEEEEEECCCC
Confidence 4445555666666777899999999999999999988887754 367899999987655 4557999999999865
Q ss_pred CccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCCC
Q psy988 327 YAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKPK 398 (408)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 398 (408)
...... ..........+|...|++++|+| +|++|++|+.||.|+|||+.+|++
T Consensus 288 ~~~~~~---~~~~~~~~~~~h~~~v~~l~~s~----------------dg~~l~sgs~Dg~v~iW~~~tGtr 340 (340)
T 4aow_A 288 IIVDEL---KQEVISTSSKAEPPQCTSLAWSA----------------DGQTLFAGYTDNLVRVWQVTIGTR 340 (340)
T ss_dssp EEEEEE---CCC-------CCCCCEEEEEECT----------------TSSEEEEEETTSCEEEEEEEC---
T ss_pred eEEEec---cccceeeeccCCCCCEEEEEECC----------------CCCEEEEEeCCCEEEEEeCCCcCC
Confidence 321110 01112233457899999999999 999999999999999999998863
No 29
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-44 Score=310.90 Aligned_cols=293 Identities=17% Similarity=0.253 Sum_probs=246.4
Q ss_pred EeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCC
Q psy988 20 QHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQL 99 (408)
Q Consensus 20 ~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 99 (408)
+|.+.|++++|+| ++++|++++.||.|++||+.+++.. ..+.+|...|.+++|+|++++|++++.||.|++||+.+.
T Consensus 30 ~h~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~--~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 106 (369)
T 3zwl_B 30 GHERPLTQVKYNK-EGDLLFSCSKDSSASVWYSLNGERL--GTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNG 106 (369)
T ss_dssp CCSSCEEEEEECT-TSCEEEEEESSSCEEEEETTTCCEE--EEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTC
T ss_pred EeeceEEEEEEcC-CCCEEEEEeCCCEEEEEeCCCchhh--hhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence 4999999999999 9999999999999999999988766 688899999999999999999999999999999999988
Q ss_pred eeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCC-----CeEEEEEccCcccc-----------eeecCcccccc
Q psy988 100 KYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSND-----SRIRLYDLRDLNLS-----------CKYKGYVNVSS 163 (408)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~-----------~~~~~~~~~~~ 163 (408)
+...... +...+.+++|+|+++.+++++.+ +.|++||++..... ..+..+.....
T Consensus 107 ~~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (369)
T 3zwl_B 107 QCVATWK---------SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDA 177 (369)
T ss_dssp CEEEEEE---------CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCC
T ss_pred cEEEEee---------cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccc
Confidence 7655443 34589999999999999999998 99999999876532 22333333336
Q ss_pred ceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCce
Q psy988 164 QIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTG 243 (408)
Q Consensus 164 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (408)
+.+++|+|++++|++++.||.|++||+++.. .....+.
T Consensus 178 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----------~~~~~~~------------------------------- 215 (369)
T 3zwl_B 178 ATVAGWSTKGKYIIAGHKDGKISKYDVSNNY-----------EYVDSID------------------------------- 215 (369)
T ss_dssp EEEEEECGGGCEEEEEETTSEEEEEETTTTT-----------EEEEEEE-------------------------------
T ss_pred eeEEEEcCCCCEEEEEcCCCEEEEEECCCCc-----------EeEEEEe-------------------------------
Confidence 8899999999999999999999999986521 1112222
Q ss_pred eeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCc-------
Q psy988 244 YVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQ------- 316 (408)
Q Consensus 244 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg------- 316 (408)
.+...|.+++|+|++++|++++.|+.|++||+++++....+.. ...+..++|+|+++++++++.++
T Consensus 216 ----~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 288 (369)
T 3zwl_B 216 ----LHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYET---DCPLNTAVITPLKEFIILGGGQEAKDVTTT 288 (369)
T ss_dssp ----CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC---SSCEEEEEECSSSSEEEEEECCC-------
T ss_pred ----cCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecC---CCCceeEEecCCCceEEEeecCCCceEEEE
Confidence 3444566666667777889999999999999999998888773 34688999999999999999888
Q ss_pred -------eEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEE
Q psy988 317 -------CIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIR 389 (408)
Q Consensus 317 -------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~ 389 (408)
.+++||..++ +.+..+.+|...|++++|+| ++++|++++.||.|+
T Consensus 289 ~~~~~~~~i~~~d~~~~------------~~~~~~~~~~~~v~~~~~s~----------------~~~~l~s~~~dg~v~ 340 (369)
T 3zwl_B 289 SANEGKFEARFYHKIFE------------EEIGRVQGHFGPLNTVAISP----------------QGTSYASGGEDGFIR 340 (369)
T ss_dssp ------CEEEEEETTTC------------CEEEEEECCSSCEEEEEECT----------------TSSEEEEEETTSEEE
T ss_pred ecCCCcceeEEEecCCC------------cchhheecccCcEEEEEECC----------------CCCEEEEEcCCCeEE
Confidence 8999999876 56778889999999999999 999999999999999
Q ss_pred EEeCCCCCCccc
Q psy988 390 VFLNKTKPKHSS 401 (408)
Q Consensus 390 iw~~~~~~~~~~ 401 (408)
+|++..+.....
T Consensus 341 iw~~~~~~~~~~ 352 (369)
T 3zwl_B 341 LHHFEKSYFDFK 352 (369)
T ss_dssp EEEECHHHHTCC
T ss_pred EEECccccchhH
Confidence 999987654333
No 30
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.2e-44 Score=332.60 Aligned_cols=351 Identities=15% Similarity=0.159 Sum_probs=273.3
Q ss_pred CceEEEEeccCCeeEeEEE-eCC---ceEEEEEcCCC-CCEEEEEeCCCcEEEEecCCCCceeeeee-c---CCceeeEE
Q psy988 2 DKTVRLWHISRKECLCCFQ-HID---FVTAICFHPRD-DRYFLSGSLDGKLRLWNIPDKKVAVWNEV-E---GQTKLITA 72 (408)
Q Consensus 2 Dg~i~vwd~~~~~~~~~~~-h~~---~v~~~~~sp~~-~~~l~t~~~dg~i~iw~~~~~~~~~~~~~-~---~~~~~v~~ 72 (408)
|+.|++||+.+++.+..+. |.+ .|.+++|+| + +++|++++.||.|++||+.+++.. ..+ . .|...|.+
T Consensus 182 d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~--~~~~~~~~~~~~~v~~ 258 (615)
T 1pgu_A 182 DGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSP-DSGEFVITVGSDRKISCFDGKSGEFL--KYIEDDQEPVQGGIFA 258 (615)
T ss_dssp TTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECS-TTCCEEEEEETTCCEEEEETTTCCEE--EECCBTTBCCCSCEEE
T ss_pred CCcEEEEeCCCcceeeeecccCCCCceEEEEEECC-CCCCEEEEEeCCCeEEEEECCCCCEe--EEecccccccCCceEE
Confidence 7999999999999999887 988 999999999 8 999999999999999999988866 455 5 89999999
Q ss_pred EEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccc
Q psy988 73 ANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLS 152 (408)
Q Consensus 73 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 152 (408)
++|+ ++++|++++.||.|++||+++.+......... ......+.++.|. +++.+++++.+|.|++||+++++..
T Consensus 259 ~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~ 332 (615)
T 1pgu_A 259 LSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDK----QQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVL 332 (615)
T ss_dssp EEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCT----TCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEE
T ss_pred EEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCC----CcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEE
Confidence 9999 99999999999999999999887655544221 1223467888885 8999999999999999999988877
Q ss_pred eeecCcccc-------------------------------ccceEEEEecCCCEEEEeecCceEEEeeeccceeee----
Q psy988 153 CKYKGYVNV-------------------------------SSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKF---- 197 (408)
Q Consensus 153 ~~~~~~~~~-------------------------------~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~---- 197 (408)
..+..|... ..+.+++| ++++.|++++.|+.+++||+.......
T Consensus 333 ~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~ 411 (615)
T 1pgu_A 333 KTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGSQPKV 411 (615)
T ss_dssp EEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSSCEEE
T ss_pred EEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccCCceE
Confidence 777665432 22334444 335667777777777777765432100
Q ss_pred ------------------eecccCCCccccccccccceEEEEEEeCCcceeeeecC-CCC-------CCCce-eeecCCC
Q psy988 198 ------------------SSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQME-PDK-------SESTG-YVLNATG 250 (408)
Q Consensus 198 ------------------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~-------~~~~~-~~~~~~~ 250 (408)
..........+..+ .+...+.+++|+ ++.+++... +.. ..... ..+..+.
T Consensus 412 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~ 488 (615)
T 1pgu_A 412 ASANNDGFTAVLTNDDDLLILQSFTGDIIKSV-RLNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLR 488 (615)
T ss_dssp EEECSSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEEECSSCCS
T ss_pred EEEcCCCCEEEEeCCCceEEEeccCCceeeec-ccCCCceEEEEc--CCEEEEeecCCCeEEEEECCCccccccccCCcc
Confidence 00000011112222 256677788887 666666554 322 01111 4456788
Q ss_pred ceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEee-ccceeceeEEEEcC----------CCCEEEEecCCceEE
Q psy988 251 RKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKG-YVNVSSQIKASFSH----------DGKYIVSGSENQCIY 319 (408)
Q Consensus 251 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~v~~~~~s~----------~~~~l~~~~~dg~i~ 319 (408)
..|.+++|+|++++|++++.|+.|++||+.+++.+..+.+ |.. .+.+++|+| ++++|++++.||.|+
T Consensus 489 ~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~--~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~ 566 (615)
T 1pgu_A 489 AKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTS--KINAISWKPAEKGANEEEIEEDLVATGSLDTNIF 566 (615)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSS--CEEEEEECCCC------CCSCCEEEEEETTSCEE
T ss_pred CceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCC--ceeEEEEcCccccccccccCCCEEEEEcCCCcEE
Confidence 8999999999999999999999999999999999887766 544 899999999 999999999999999
Q ss_pred EeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCC
Q psy988 320 IWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKT 395 (408)
Q Consensus 320 iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 395 (408)
+|++.++. +.+..+.+|...|++++|+| +++ |++++.||.|++|++.+
T Consensus 567 iw~~~~~~-----------~~~~~~~~h~~~v~~l~~s~----------------~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 567 IYSVKRPM-----------KIIKALNAHKDGVNNLLWET----------------PST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp EEESSCTT-----------CCEEETTSSTTCEEEEEEEE----------------TTE-EEEEETTSCEEEEEEC-
T ss_pred EEECCCCc-----------eechhhhcCccceEEEEEcC----------------CCC-eEEecCCceEEEEeeec
Confidence 99998752 35666788999999999999 899 99999999999999875
No 31
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.3e-44 Score=305.24 Aligned_cols=263 Identities=17% Similarity=0.299 Sum_probs=225.9
Q ss_pred CCceEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCC--ceeeeeecCCceeeEEEEEec
Q psy988 1 MDKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKK--VAVWNEVEGQTKLITAANFCE 77 (408)
Q Consensus 1 ~Dg~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~--~~~~~~~~~~~~~v~~~~~~~ 77 (408)
.||+|+|||+.+++.+..+. |...|.+++|+| ++++|++|+.|+.|++|++.+.. ......+.+|...|.++.|++
T Consensus 75 ~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 153 (340)
T 1got_B 75 QDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP-SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD 153 (340)
T ss_dssp TTTEEEEEETTTCCEEEEEECSSSCEEEEEECT-TSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEE
T ss_pred CCCcEEEEECCCCCcceEeecCCccEEEEEECC-CCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECC
Confidence 38999999999999998887 999999999999 99999999999999999998754 233467889999999999998
Q ss_pred CCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecC
Q psy988 78 NGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKG 157 (408)
Q Consensus 78 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 157 (408)
++. +++++.|+.|++||+++++....+ .+|...|.+++|+|+++++++++.|+.|++||+++++....+.+
T Consensus 154 ~~~-l~s~s~d~~i~~wd~~~~~~~~~~--------~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~ 224 (340)
T 1got_B 154 DNQ-IVTSSGDTTCALWDIETGQQTTTF--------TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 224 (340)
T ss_dssp TTE-EEEEETTSCEEEEETTTTEEEEEE--------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECC
T ss_pred CCc-EEEEECCCcEEEEECCCCcEEEEE--------cCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcC
Confidence 875 889999999999999988754433 24667999999999999999999999999999999998888887
Q ss_pred ccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCC
Q psy988 158 YVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPD 237 (408)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 237 (408)
|... +.+++|+|++++|++++.||.|++||++.+..... +. +
T Consensus 225 h~~~--v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~------------~~-~----------------------- 266 (340)
T 1got_B 225 HESD--INAICFFPNGNAFATGSDDATCRLFDLRADQELMT------------YS-H----------------------- 266 (340)
T ss_dssp CSSC--EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE------------EC-C-----------------------
T ss_pred CcCC--EEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEE------------Ec-c-----------------------
Confidence 7654 88999999999999999999999999975432110 00 0
Q ss_pred CCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCce
Q psy988 238 KSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQC 317 (408)
Q Consensus 238 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 317 (408)
..+...|.+++|+|++++|++|+.|+.|++||+.+++....+.+|.. .|.+++|+|+|++|++|+.||.
T Consensus 267 ---------~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~--~v~~~~~s~dg~~l~s~s~D~~ 335 (340)
T 1got_B 267 ---------DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN--RVSCLGVTDDGMAVATGSWDSF 335 (340)
T ss_dssp ---------TTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEECTTSSCEEEEETTSC
T ss_pred ---------CCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCC--cEEEEEEcCCCCEEEEEcCCcc
Confidence 01223567777888888899999999999999999999999988766 8899999999999999999999
Q ss_pred EEEee
Q psy988 318 IYIWK 322 (408)
Q Consensus 318 i~iw~ 322 (408)
|++||
T Consensus 336 i~iWd 340 (340)
T 1got_B 336 LKIWN 340 (340)
T ss_dssp EEEEC
T ss_pred EEecC
Confidence 99996
No 32
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=3.4e-45 Score=320.95 Aligned_cols=297 Identities=15% Similarity=0.188 Sum_probs=230.4
Q ss_pred EeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEec-CCCEEEEEecCCEEEEEeccC
Q psy988 20 QHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCE-NGKFAVVGSYDGRCIFYTTDQ 98 (408)
Q Consensus 20 ~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~ 98 (408)
.|...|++|+|+|.++++||+|+.||.|+|||+.+++......+.+|.+.|++++|+| ++++|++++.||+|++||+++
T Consensus 117 ~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~ 196 (435)
T 4e54_B 117 PFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKG 196 (435)
T ss_dssp ECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTS
T ss_pred CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccC
Confidence 3899999999999777899999999999999999887665567789999999999998 689999999999999999987
Q ss_pred CeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCC-EEE
Q psy988 99 LKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGK-YIV 177 (408)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~ 177 (408)
...... .....+...+.+++|+|++.+|++|+.||.|++||++. +.+..+.+|.. .+.+++|+|++. +|+
T Consensus 197 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~--~v~~v~~~p~~~~~~~ 267 (435)
T 4e54_B 197 NILRVF------ASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKK--KVTHVALNPCCDWFLA 267 (435)
T ss_dssp CEEEEE------ECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSS--CEEEEEECTTCSSEEE
T ss_pred CceeEE------eccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccc--eEEeeeecCCCceEEE
Confidence 543221 12223345688999999999999999999999999974 45566666654 488999999886 678
Q ss_pred EeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeec
Q psy988 178 SGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIE 257 (408)
Q Consensus 178 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 257 (408)
+++.|+.|++||+++..... .+ .....|...|.+++
T Consensus 268 s~s~d~~v~iwd~~~~~~~~---------~~-----------------------------------~~~~~h~~~v~~~~ 303 (435)
T 4e54_B 268 TASVDQTVKIWDLRQVRGKA---------SF-----------------------------------LYSLPHRHPVNAAC 303 (435)
T ss_dssp EEETTSBCCEEETTTCCSSS---------CC-----------------------------------SBCCBCSSCEEECC
T ss_pred EecCcceeeEEecccccccc---------eE-----------------------------------EEeeecccccccee
Confidence 89999999999986532110 00 11124566777888
Q ss_pred cCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccce----eceeEEEEcCCCCEEEEec------------CCceEEEe
Q psy988 258 PMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNV----SSQIKASFSHDGKYIVSGS------------ENQCIYIW 321 (408)
Q Consensus 258 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~----~~v~~~~~s~~~~~l~~~~------------~dg~i~iw 321 (408)
|+|++++|++++.|+.|++||+.+++....+..|... ..+..+.|+|++.+++++. .++.|++|
T Consensus 304 ~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iw 383 (435)
T 4e54_B 304 FSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVF 383 (435)
T ss_dssp BCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEE
T ss_pred ECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEE
Confidence 8888899999999999999999999887777655431 1234456777777766653 34579999
Q ss_pred eccccCccccccccCccccceee-eeeccceEEE-EecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCCC
Q psy988 322 KTHHDYAKFSSVRRDRNDFWEGI-KAHNAVVTCA-VFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKPK 398 (408)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~-~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 398 (408)
|..++ +.+..+ .+|...|.++ +|+| +|++|++|+ |+.|+||++++++.
T Consensus 384 d~~~g------------~~~~~l~~~~~~~v~s~~~fsp----------------dg~~lasg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 384 DGNSG------------KMMCQLYDPESSGISSLNEFNP----------------MGDTLASAM-GYHILIWSQQEART 433 (435)
T ss_dssp CSSSC------------CEEEEECCSSCCCCCCEEEECT----------------TSSCEEEEC-SSEEEECCCC----
T ss_pred ECCCC------------cEEEEEeCCCCCcEEEEEEECC----------------CCCEEEEEc-CCcEEEEECCcCee
Confidence 99887 444444 4678888887 6999 999999876 88999999998864
No 33
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=9.3e-45 Score=315.36 Aligned_cols=309 Identities=11% Similarity=0.082 Sum_probs=239.9
Q ss_pred eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCC----ceeeeeecCCceeeEEEEEecC----C---CEEEEEecCC
Q psy988 21 HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKK----VAVWNEVEGQTKLITAANFCEN----G---KFAVVGSYDG 89 (408)
Q Consensus 21 h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~----~~~~~~~~~~~~~v~~~~~~~~----~---~~l~~~~~dg 89 (408)
|.+.|++++|+| ++|++|+.||.|++|++.+++ ......+.+|...|.+++|+|+ + ++|++++.||
T Consensus 15 h~~~i~~~~~~~---~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg 91 (397)
T 1sq9_A 15 HDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSG 91 (397)
T ss_dssp SSSCEEEEEECS---SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTS
T ss_pred hhcCeEEEEecC---CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCC
Confidence 999999999987 689999999999999999887 2223678899999999999999 9 9999999999
Q ss_pred EEEEEeccCCeeeEEEEEeeccccccC--CCCeEEEeeC----CCCCe-EEEeeCCCeEEEEEccC------cccce---
Q psy988 90 RCIFYTTDQLKYHTQIHVRSTRGKNAT--GRKISGIEPM----PGEDK-ILVTSNDSRIRLYDLRD------LNLSC--- 153 (408)
Q Consensus 90 ~i~iw~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~----~~~~~-l~~~~~dg~i~i~d~~~------~~~~~--- 153 (408)
.|++|++.+.+............+..+ ...|.+++|+ |+++. |++++.||.|++||+++ ++.+.
T Consensus 92 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 171 (397)
T 1sq9_A 92 DLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSP 171 (397)
T ss_dssp CEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCC
T ss_pred CEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccC
Confidence 999999987664211112222222222 4789999999 99999 99999999999999998 76666
Q ss_pred --eecC-----ccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCC
Q psy988 154 --KYKG-----YVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPC 226 (408)
Q Consensus 154 --~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 226 (408)
.+.. ..+...+.+++|+|++ +|++++.||.|++||+++.... ..+..
T Consensus 172 ~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~------------~~~~~------------- 225 (397)
T 1sq9_A 172 TLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPL------------YNFES------------- 225 (397)
T ss_dssp EEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEE------------EEEEC-------------
T ss_pred cceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCcee------------EEEec-------------
Confidence 5543 3334558899999999 9999999999999999753221 11222
Q ss_pred cceeeeecCCCCCCCceeeecCC---CceeeeeccCCCCCeEEEecCC---CeEEEEEcCCCeeeeEEee----------
Q psy988 227 PELIIAQMEPDKSESTGYVLNAT---GRKISGIEPMPGEDKILVTSND---SRIRLYDLRDLNLSCKYKG---------- 290 (408)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~---------- 290 (408)
...| ...+.+++|+|++++|++++.| +.|++||+++++.+..+..
T Consensus 226 -------------------~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 286 (397)
T 1sq9_A 226 -------------------QHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLG 286 (397)
T ss_dssp -------------------CC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------C
T ss_pred -------------------cccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCccccccccc
Confidence 0013 4556666777777888999999 9999999999999988887
Q ss_pred ---ccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeee------ee--------------
Q psy988 291 ---YVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIK------AH-------------- 347 (408)
Q Consensus 291 ---~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~------~h-------------- 347 (408)
|.. .+.+++|+|++++|++++.||.|++||+.++ +.+..+. +|
T Consensus 287 ~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~------------~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 352 (397)
T 1sq9_A 287 EFAHSS--WVMSLSFNDSGETLCSAGWDGKLRFWDVKTK------------ERITTLNMHCDDIEIEEDILAVDEHGDSL 352 (397)
T ss_dssp CBSBSS--CEEEEEECSSSSEEEEEETTSEEEEEETTTT------------EEEEEEECCGGGCSSGGGCCCBCTTSCBC
T ss_pred ccccCC--cEEEEEECCCCCEEEEEeCCCeEEEEEcCCC------------ceeEEEecccCcccchhhhhccccccccc
Confidence 544 8899999999999999999999999999876 4555566 66
Q ss_pred -ccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCC
Q psy988 348 -NAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKP 397 (408)
Q Consensus 348 -~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 397 (408)
...|++++|+|++++++.... ++++|++++.||.|++|++.+++
T Consensus 353 ~~~~v~~~~~~~~g~~~~~~~~------~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 353 AEPGVFDVKFLKKGWRSGMGAD------LNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp SSCCEEEEEEECTTTSBSTTCT------TSCEEEEEETTTEEEEEEEEC--
T ss_pred cCCceeEEEecccccccccccc------ccceEEEecCCCcEEEEEcCCCC
Confidence 899999999994322222110 22799999999999999998764
No 34
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.5e-45 Score=319.46 Aligned_cols=325 Identities=14% Similarity=0.187 Sum_probs=243.9
Q ss_pred EEeccCCeeEeEE-E-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCC---CCceeeeeecCCceeeEEEEEecCCCE
Q psy988 7 LWHISRKECLCCF-Q-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPD---KKVAVWNEVEGQTKLITAANFCENGKF 81 (408)
Q Consensus 7 vwd~~~~~~~~~~-~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~ 81 (408)
.|+ .+++++..+ . |.+.|++++|+|.++++|++|+.||+|++||+.+ +..........|...|.+++|+|++++
T Consensus 47 ~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 125 (437)
T 3gre_A 47 MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDA 125 (437)
T ss_dssp GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSE
T ss_pred ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCE
Confidence 466 356777777 4 8999999999996688999999999999999976 432211122258999999999999999
Q ss_pred EEEEecCCEEEEEecc---CCeeeEEEEEeecccc--cc--CCCCeEEEe--eCCCCCeEEEeeCCCeEEEEEccCcccc
Q psy988 82 AVVGSYDGRCIFYTTD---QLKYHTQIHVRSTRGK--NA--TGRKISGIE--PMPGEDKILVTSNDSRIRLYDLRDLNLS 152 (408)
Q Consensus 82 l~~~~~dg~i~iw~~~---~~~~~~~~~~~~~~~~--~~--~~~~v~~~~--~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 152 (408)
|++++.||.|++||++ .++............. .. +...+.++. +++++..|++++.|+.|++||+++++.+
T Consensus 126 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 205 (437)
T 3gre_A 126 FAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERL 205 (437)
T ss_dssp EEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEE
T ss_pred EEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeee
Confidence 9999999999999995 3333222221111110 11 455777777 6688999999999999999999999998
Q ss_pred eeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccc-cccceEEEEEEeCCcceee
Q psy988 153 CKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIK-AHNAVVTCAVFAPCPELII 231 (408)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~ 231 (408)
..+..+.+...+.+++|+|++++|++++.||.|++||++++... ..+. .|...|.+++++|
T Consensus 206 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~------------~~~~~~~~~~v~~~~~~~------ 267 (437)
T 3gre_A 206 QIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLI------------RSWSFGDHAPITHVEVCQ------ 267 (437)
T ss_dssp EEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEE------------EEEBCTTCEEEEEEEECT------
T ss_pred EEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEE------------EEEecCCCCceEEEEecc------
Confidence 88887444456899999999999999999999999999764322 2222 4455666666554
Q ss_pred eecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeecc-------------------
Q psy988 232 AQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV------------------- 292 (408)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~------------------- 292 (408)
.|+|++.+|++++.|+.|++||+++++.+..+.++.
T Consensus 268 -------------------------~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 322 (437)
T 3gre_A 268 -------------------------FYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELN 322 (437)
T ss_dssp -------------------------TTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCC
T ss_pred -------------------------ccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccce
Confidence 356778889999999999999999999888887553
Q ss_pred -----ceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccc-------------------------cCccccce
Q psy988 293 -----NVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVR-------------------------RDRNDFWE 342 (408)
Q Consensus 293 -----~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-------------------------~~~~~~~~ 342 (408)
+...|.+++|+ ++++|++|+.||.|++||+.++........ ........
T Consensus 323 ~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (437)
T 3gre_A 323 FCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVD 401 (437)
T ss_dssp CCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC--------
T ss_pred ecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccC
Confidence 33457889999 779999999999999999988743322111 00011112
Q ss_pred eeeeeccceEEEEecCCchhhhhccCCCCCCCc--ccEEEEEecCCeEEEEe
Q psy988 343 GIKAHNAVVTCAVFAPCPELIIAQMEPDKSEST--GYVLVSADFNGVIRVFL 392 (408)
Q Consensus 343 ~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~--~~~l~s~~~dg~v~iw~ 392 (408)
....|...|++++|++ + +.+|++|+.||.|+||+
T Consensus 402 ~~~~h~~~I~~i~~~~----------------~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 402 DSLYHHDIINSISTCE----------------VDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp -----CCCEEEEEEEE----------------SSSSEEEEEEETTSCEEEEC
T ss_pred cccccccceeeEeeec----------------cCCceEEEEEcCCceEEEeC
Confidence 2334899999999998 5 78999999999999995
No 35
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.7e-44 Score=304.83 Aligned_cols=253 Identities=17% Similarity=0.175 Sum_probs=203.2
Q ss_pred eEeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceee--eeecCCceeeEEEEEecCCCEEEEEecCCEEE
Q psy988 15 CLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW--NEVEGQTKLITAANFCENGKFAVVGSYDGRCI 92 (408)
Q Consensus 15 ~~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 92 (408)
......|...|.+++|+| ++ .|++|+.||+|+|||+.+++.... ..+.+|...|++++|+|+|++|++|+.|++|+
T Consensus 75 ~~~~~~~~~~v~~~~~s~-d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~ 152 (344)
T 4gqb_B 75 CSAGVQTEAGVADLTWVG-ER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIK 152 (344)
T ss_dssp CSEEEEESSCEEEEEEET-TT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred eeeeeccCCCEEEEEEeC-CC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEE
Confidence 344556889999999999 64 688999999999999998875532 24568999999999999999999999999999
Q ss_pred EEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCC-eEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEec
Q psy988 93 FYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGED-KILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSH 171 (408)
Q Consensus 93 iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (408)
+||+++++....+ .+|...|.+++|+|++. .|++++.|+.|++||+++++....+........+.+++|+|
T Consensus 153 iwd~~~~~~~~~~--------~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p 224 (344)
T 4gqb_B 153 VWDLAQQVVLSSY--------RAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHP 224 (344)
T ss_dssp EEETTTTEEEEEE--------CCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECS
T ss_pred EEECCCCcEEEEE--------cCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecC
Confidence 9999988765433 25678999999999885 67889999999999999999888776655556678899998
Q ss_pred C-CCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCC
Q psy988 172 D-GKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATG 250 (408)
Q Consensus 172 ~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (408)
+ +++|++|+.||.|++||++++ ..+..+.+|...|.+++|+|++.
T Consensus 225 ~~~~~l~sg~~dg~v~~wd~~~~------------~~~~~~~~h~~~v~~v~fsp~g~---------------------- 270 (344)
T 4gqb_B 225 QQSEVFVFGDENGTVSLVDTKST------------SCVLSSAVHSQCVTGLVFSPHSV---------------------- 270 (344)
T ss_dssp SCTTEEEEEETTSEEEEEESCC--------------CCEEEECCSSCEEEEEECSSSS----------------------
T ss_pred CCCcceEEeccCCcEEEEECCCC------------cEEEEEcCCCCCEEEEEEccCCC----------------------
Confidence 5 567889999999999999754 23344556666666666665543
Q ss_pred ceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCC-EEEEecCCceEEEeecccc
Q psy988 251 RKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGK-YIVSGSENQCIYIWKTHHD 326 (408)
Q Consensus 251 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~ 326 (408)
++|++++.|++|+|||++++++. .+.+|.. .|.+++|+|+++ +|++|+.||+|++|++.+.
T Consensus 271 ------------~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~--~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 271 ------------PFLASLSEDCSLAVLDSSLSELF-RSQAHRD--FVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp ------------CCEEEEETTSCEEEECTTCCEEE-EECCCSS--CEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred ------------eEEEEEeCCCeEEEEECCCCcEE-EEcCCCC--CEEEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence 34789999999999999988765 4566655 899999999986 5678999999999999864
No 36
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=2.2e-44 Score=315.32 Aligned_cols=316 Identities=12% Similarity=0.123 Sum_probs=247.2
Q ss_pred CceEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCE
Q psy988 2 DKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKF 81 (408)
Q Consensus 2 Dg~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 81 (408)
||.|++||+.+++....+.....+....|+| ++++|++|+.||.|++||+.+++.. ..+.+|...|.+++|+|++++
T Consensus 77 d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~h~~~v~~~~~~~~~~~ 153 (420)
T 3vl1_A 77 DGHDFLFNTIIRDGSKMLKRADYTAVDTAKL-QMRRFILGTTEGDIKVLDSNFNLQR--EIDQAHVSEITKLKFFPSGEA 153 (420)
T ss_dssp TTEEEEEECCSEETTTTSCSCCEEEEEEECS-SSCEEEEEETTSCEEEECTTSCEEE--EETTSSSSCEEEEEECTTSSE
T ss_pred CCcEEEEEecccceeeEEecCCceEEEEEec-CCCEEEEEECCCCEEEEeCCCccee--eecccccCccEEEEECCCCCE
Confidence 7899999999888777766445566667899 9999999999999999999987765 567899999999999999999
Q ss_pred EEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccc-
Q psy988 82 AVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVN- 160 (408)
Q Consensus 82 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~- 160 (408)
|++++.|+.|++||+.+.+....+. .|...|.+++|+|+++.|++++.|+.|++||+++++....+..+..
T Consensus 154 l~s~s~d~~i~iwd~~~~~~~~~~~--------~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~ 225 (420)
T 3vl1_A 154 LISSSQDMQLKIWSVKDGSNPRTLI--------GHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENP 225 (420)
T ss_dssp EEEEETTSEEEEEETTTCCCCEEEE--------CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBT
T ss_pred EEEEeCCCeEEEEeCCCCcCceEEc--------CCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCC
Confidence 9999999999999999877654432 4667999999999999999999999999999999988877765321
Q ss_pred ---------------------cccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEE
Q psy988 161 ---------------------VSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVT 219 (408)
Q Consensus 161 ---------------------~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 219 (408)
...+.+++|+|++++|++++.||.|++||++++..... ...
T Consensus 226 ~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~-----------~~~------- 287 (420)
T 3vl1_A 226 HDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQ-----------LPS------- 287 (420)
T ss_dssp TCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEE-----------ECC-------
T ss_pred CCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEE-----------ccc-------
Confidence 13344566789999999999999999999976432211 111
Q ss_pred EEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCC-eEEEecCCCeEEEEEcCCCee-eeEEeeccceece
Q psy988 220 CAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGED-KILVTSNDSRIRLYDLRDLNL-SCKYKGYVNVSSQ 297 (408)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~~~v 297 (408)
.+...+.+++|+|+++ +|++++.||.|++||+++++. +..+..+.. ..+
T Consensus 288 ----------------------------~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~-~~v 338 (420)
T 3vl1_A 288 ----------------------------KFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEG-TPI 338 (420)
T ss_dssp ----------------------------TTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTT-SCE
T ss_pred ----------------------------ccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCC-CCc
Confidence 2334555566666666 789999999999999998754 666766432 356
Q ss_pred eEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCccc
Q psy988 298 IKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGY 377 (408)
Q Consensus 298 ~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~ 377 (408)
.++ +.+++++|++++.||.|++|++........... ......+.+|...|.+++|+| ++.
T Consensus 339 ~~~-~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~s~----------------~~~ 398 (420)
T 3vl1_A 339 NNV-YFAAGALFVSSGFDTSIKLDIISDPESERPAIE---FETPTFLVSNDDAVSQFCYVS----------------DDE 398 (420)
T ss_dssp EEE-EEETTEEEEEETTTEEEEEEEECCTTCCSCEEC---TTSCEEECCSSCCCCEEEEEC----------------CSS
T ss_pred eEE-EeCCCCEEEEecCCccEEEEeccCCCCCcccee---ccCccEEccCCcceEEEEEcc----------------CCC
Confidence 666 556889999999999999999987432211110 012233567889999999999 666
Q ss_pred ---EEEEEecCCeEEEEeCCC
Q psy988 378 ---VLVSADFNGVIRVFLNKT 395 (408)
Q Consensus 378 ---~l~s~~~dg~v~iw~~~~ 395 (408)
.|++++.+|.+++|++..
T Consensus 399 ~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 399 SNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp SSCEEEEEETTTEEEEEESCC
T ss_pred CcceEEEEcCCceEEEEeccC
Confidence 677777899999999875
No 37
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.2e-43 Score=301.47 Aligned_cols=290 Identities=13% Similarity=0.216 Sum_probs=237.3
Q ss_pred eeEeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCcee-eeeec--CCceeeEEEEEecCCCEEEEEecCCE
Q psy988 14 ECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAV-WNEVE--GQTKLITAANFCENGKFAVVGSYDGR 90 (408)
Q Consensus 14 ~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~-~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~ 90 (408)
+.+..+.|.+.|++++|+| ++++|++++ ||.|++|++.++.... ...+. .|...|.+++|+|++++|++++.||.
T Consensus 43 ~~~~~~~h~~~v~~~~~~~-~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 120 (337)
T 1gxr_A 43 RQINTLNHGEVVCAVTISN-PTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAST 120 (337)
T ss_dssp EEEEEECCSSCCCEEEECS-SSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSE
T ss_pred ccceeccCCCceEEEEEec-CCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCc
Confidence 4445556999999999999 999999998 9999999998765321 12222 78999999999999999999999999
Q ss_pred EEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEe
Q psy988 91 CIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFS 170 (408)
Q Consensus 91 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (408)
|++||+.+.+....... ..|...+.+++|+|+++++++++.||.|++||+++++....+..+.. .+.+++|+
T Consensus 121 i~~~d~~~~~~~~~~~~------~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~--~i~~~~~~ 192 (337)
T 1gxr_A 121 LSIWDLAAPTPRIKAEL------TSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD--GASCIDIS 192 (337)
T ss_dssp EEEEECCCC--EEEEEE------ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS--CEEEEEEC
T ss_pred EEEEECCCCCcceeeec------ccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccC--ceEEEEEC
Confidence 99999998763322221 23556899999999999999999999999999999988888877654 47899999
Q ss_pred cCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCC
Q psy988 171 HDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATG 250 (408)
Q Consensus 171 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (408)
|++++|++++.||.|++||++++..... . .+.
T Consensus 193 ~~~~~l~~~~~dg~i~~~d~~~~~~~~~-------------~-----------------------------------~~~ 224 (337)
T 1gxr_A 193 NDGTKLWTGGLDNTVRSWDLREGRQLQQ-------------H-----------------------------------DFT 224 (337)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEEE-------------E-----------------------------------ECS
T ss_pred CCCCEEEEEecCCcEEEEECCCCceEee-------------e-----------------------------------cCC
Confidence 9999999999999999999875432110 0 123
Q ss_pred ceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccc
Q psy988 251 RKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKF 330 (408)
Q Consensus 251 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 330 (408)
..+.+++|+|+++++++++.++.|++||+++++.. .+..|. ..+.+++|+|++++|++++.||.|++|++.++.
T Consensus 225 ~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~--- 298 (337)
T 1gxr_A 225 SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHE--SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA--- 298 (337)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCS--SCEEEEEECTTSSEEEEEETTSEEEEEETTTCC---
T ss_pred CceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCCc--cceeEEEECCCCCEEEEecCCCcEEEEECCCCe---
Confidence 34666777777888899999999999999987654 444443 478999999999999999999999999998762
Q ss_pred cccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeC
Q psy988 331 SSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLN 393 (408)
Q Consensus 331 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~ 393 (408)
.+ ....|...|.+++|+| ++++|++++.||.|++|++
T Consensus 299 ---------~~-~~~~~~~~v~~~~~s~----------------~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 299 ---------SI-FQSKESSSVLSCDISV----------------DDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp ---------EE-EEEECSSCEEEEEECT----------------TSCEEEEEETTSCEEEEEE
T ss_pred ---------EE-EEecCCCcEEEEEECC----------------CCCEEEEecCCCeEEEEEE
Confidence 22 3345889999999999 9999999999999999996
No 38
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=4.3e-44 Score=298.66 Aligned_cols=259 Identities=15% Similarity=0.285 Sum_probs=216.0
Q ss_pred eeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCC
Q psy988 60 WNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDS 139 (408)
Q Consensus 60 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 139 (408)
.+.+.+|...|.+++|+|++++|++++.||.|++||+++......+. .|..+|.+++|+|++++|++++.|+
T Consensus 6 ~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~s~s~d~ 77 (304)
T 2ynn_A 6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQ--------VTETPVRAGKFIARKNWIIVGSDDF 77 (304)
T ss_dssp EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE--------CCSSCEEEEEEEGGGTEEEEEETTS
T ss_pred EEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEee--------ccCCcEEEEEEeCCCCEEEEECCCC
Confidence 36788999999999999999999999999999999999887654432 3456899999999999999999999
Q ss_pred eEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEE
Q psy988 140 RIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVT 219 (408)
Q Consensus 140 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 219 (408)
.|++||+++++.+..+.+|... +.+++|+|++++|++|+.|+.|++||++++.. ....+.+|...
T Consensus 78 ~i~vwd~~~~~~~~~~~~h~~~--v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~-----------~~~~~~~h~~~-- 142 (304)
T 2ynn_A 78 RIRVFNYNTGEKVVDFEAHPDY--IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA-----------LEQTFEGHEHF-- 142 (304)
T ss_dssp EEEEEETTTCCEEEEEECCSSC--EEEEEECSSSSEEEEEETTSCEEEEEGGGTTE-----------EEEEECCCCSC--
T ss_pred EEEEEECCCCcEEEEEeCCCCc--EEEEEEcCCCCEEEEECCCCeEEEEECCCCcc-----------hhhhhcccCCc--
Confidence 9999999999998888887654 88999999999999999999999999865311 11223344444
Q ss_pred EEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCC-CCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceecee
Q psy988 220 CAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMP-GEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQI 298 (408)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~ 298 (408)
|.+++|+| ++..|++++.|++|++||++++.....+..+. ...+.
T Consensus 143 ---------------------------------v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~-~~~v~ 188 (304)
T 2ynn_A 143 ---------------------------------VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ-ERGVN 188 (304)
T ss_dssp ---------------------------------EEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCC-TTCEE
T ss_pred ---------------------------------EEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCC-cCcEE
Confidence 44555555 45678999999999999998887766665432 22566
Q ss_pred EEEEcC--CCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcc
Q psy988 299 KASFSH--DGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTG 376 (408)
Q Consensus 299 ~~~~s~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~ 376 (408)
.+.|+| ++++|++|+.|+.|++||+.++ +++..+.+|...|.+++|+| ++
T Consensus 189 ~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~------------~~~~~~~~h~~~v~~~~~~p----------------~~ 240 (304)
T 2ynn_A 189 YVDYYPLPDKPYMITASDDLTIKIWDYQTK------------SCVATLEGHMSNVSFAVFHP----------------TL 240 (304)
T ss_dssp EEEECCSTTCCEEEEEETTSEEEEEETTTT------------EEEEEEECCSSCEEEEEECS----------------SS
T ss_pred EEEEEEcCCCCEEEEEcCCCeEEEEeCCCC------------ccceeeCCCCCCEEEEEECC----------------CC
Confidence 778876 7889999999999999999886 67788999999999999999 89
Q ss_pred cEEEEEecCCeEEEEeCCCCCCccccc
Q psy988 377 YVLVSADFNGVIRVFLNKTKPKHSSLP 403 (408)
Q Consensus 377 ~~l~s~~~dg~v~iw~~~~~~~~~~~~ 403 (408)
++|++|+.||+|++||+.+++....+.
T Consensus 241 ~~l~s~s~Dg~i~iWd~~~~~~~~~~~ 267 (304)
T 2ynn_A 241 PIIISGSEDGTLKIWNSSTYKVEKTLN 267 (304)
T ss_dssp SEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred CEEEEEcCCCeEEEEECCCCceeeecc
Confidence 999999999999999999887665543
No 39
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1e-43 Score=336.54 Aligned_cols=361 Identities=14% Similarity=0.143 Sum_probs=291.3
Q ss_pred CceEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCC
Q psy988 2 DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGK 80 (408)
Q Consensus 2 Dg~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 80 (408)
||.|+|||+.+++.+..+. |.+.|.+++|+| ++++|++++.||.|++||+.+++.. ..+.+|...|.+++|+|+++
T Consensus 34 ~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vw~~~~~~~~--~~~~~~~~~v~~~~~s~~~~ 110 (814)
T 3mkq_A 34 SGRVEIWNYETQVEVRSIQVTETPVRAGKFIA-RKNWIIVGSDDFRIRVFNYNTGEKV--VDFEAHPDYIRSIAVHPTKP 110 (814)
T ss_dssp TSEEEEEETTTTEEEEEEECCSSCEEEEEEEG-GGTEEEEEETTSEEEEEETTTCCEE--EEEECCSSCEEEEEECSSSS
T ss_pred CCEEEEEECCCCceEEEEecCCCcEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcEE--EEEecCCCCEEEEEEeCCCC
Confidence 7999999999999999888 999999999999 9999999999999999999998876 67889999999999999999
Q ss_pred EEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCC-CCCeEEEeeCCCeEEEEEccCcccceeecCcc
Q psy988 81 FAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMP-GEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV 159 (408)
Q Consensus 81 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 159 (408)
+|++++.||.|++|++++....... ...|...|.+++|+| ++..+++++.||.|++||+++++....+..+.
T Consensus 111 ~l~~~~~dg~i~vw~~~~~~~~~~~-------~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~ 183 (814)
T 3mkq_A 111 YVLSGSDDLTVKLWNWENNWALEQT-------FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ 183 (814)
T ss_dssp EEEEEETTSEEEEEEGGGTSEEEEE-------EECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCC
T ss_pred EEEEEcCCCEEEEEECCCCceEEEE-------EcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCC
Confidence 9999999999999999876322221 124557899999999 88899999999999999999888777666543
Q ss_pred ccccceEEEEec--CCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCC
Q psy988 160 NVSSQIKASFSH--DGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPD 237 (408)
Q Consensus 160 ~~~~~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 237 (408)
. ..+..++|+| ++.+|++++.||.|++||+.++. ....+..|...+.+++|+|+++.+++...+.
T Consensus 184 ~-~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 250 (814)
T 3mkq_A 184 E-RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS------------CVATLEGHMSNVSFAVFHPTLPIIISGSEDG 250 (814)
T ss_dssp T-TCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTE------------EEEEEECCSSCEEEEEECSSSSEEEEEETTS
T ss_pred C-CCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCc------------EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCC
Confidence 2 3477899999 99999999999999999997643 3345677889999999999999888775443
Q ss_pred C-------CCCceeeecCCCceeeeeccCCCCCe-EEEecCCCeEEEEEcCCCeeeeEEee-------------------
Q psy988 238 K-------SESTGYVLNATGRKISGIEPMPGEDK-ILVTSNDSRIRLYDLRDLNLSCKYKG------------------- 290 (408)
Q Consensus 238 ~-------~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~------------------- 290 (408)
. .......+..+...+.+++|+|++.. +++++.++.+.+|++........+..
T Consensus 251 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 330 (814)
T 3mkq_A 251 TLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFT 330 (814)
T ss_dssp CEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEE
T ss_pred eEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeee
Confidence 2 34455566777889999999999874 24445567788998765432222210
Q ss_pred ----------------------ccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeec
Q psy988 291 ----------------------YVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHN 348 (408)
Q Consensus 291 ----------------------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~ 348 (408)
......+.+++|+|+|+++++++ ++.+.+|++... ...+.
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~-----------------~~~~~ 392 (814)
T 3mkq_A 331 AVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAW-----------------RNKAF 392 (814)
T ss_dssp EECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTT-----------------EEEEE
T ss_pred eecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECccc-----------------cccCC
Confidence 01122467899999999999998 899999997542 12356
Q ss_pred cceEEEEecCCchhhhhccCCC------------------CCCCcc---cEEEEEecCCeEEEEeCCCCCCccccc
Q psy988 349 AVVTCAVFAPCPELIIAQMEPD------------------KSESTG---YVLVSADFNGVIRVFLNKTKPKHSSLP 403 (408)
Q Consensus 349 ~~v~~~~~~~~~~~~~~~~~~~------------------~~s~~~---~~l~s~~~dg~v~iw~~~~~~~~~~~~ 403 (408)
+.+.+++|+|+++++++...+. .+++++ +.|++++.||.|++||+.+++....++
T Consensus 393 ~~i~~~~~spdg~~la~~~~~g~v~l~~~~~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~ 468 (814)
T 3mkq_A 393 GKCQDFVWGPDSNSYALIDETGQIKYYKNFKEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRRID 468 (814)
T ss_dssp EECSEEEECTTSSCEEEECTTCCEEEEETTEECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCEEEEES
T ss_pred CceEEEEEeCCCCeEEEEeCCCcEEEEECCCCccceEEcCCcCccceecceEEEEecCCEEEEEECCcCcEEEEEe
Confidence 7788999999999888776544 678898 688999999999999999887665544
No 40
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=3.6e-44 Score=308.91 Aligned_cols=322 Identities=11% Similarity=0.117 Sum_probs=246.5
Q ss_pred eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCe
Q psy988 21 HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLK 100 (408)
Q Consensus 21 h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 100 (408)
|.++|++++|+| ++++|++++.|+.|++||+.+++......+.+|...|.+++|+|++++|++++.||.|++||+++.+
T Consensus 7 ~~~~i~~~~~s~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 85 (372)
T 1k8k_C 7 LVEPISCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT 85 (372)
T ss_dssp CSSCCCEEEECT-TSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE
T ss_pred cCCCeEEEEECC-CCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCe
Confidence 899999999999 9999999999999999999988744447888999999999999999999999999999999998876
Q ss_pred eeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCccc---ceee-cCccccccceEEEEecCCCEE
Q psy988 101 YHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNL---SCKY-KGYVNVSSQIKASFSHDGKYI 176 (408)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~l 176 (408)
...... ...|...|.+++|+|++++|++++.|+.|++||++.++. ...+ ..+ ...+.+++|+|++++|
T Consensus 86 ~~~~~~------~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l 157 (372)
T 1k8k_C 86 WKPTLV------ILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPI--RSTVLSLDWHPNSVLL 157 (372)
T ss_dssp EEEEEE------CCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTC--CSCEEEEEECTTSSEE
T ss_pred eeeeEE------eecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeeccc--CCCeeEEEEcCCCCEE
Confidence 433322 123567899999999999999999999999999998763 2222 222 3458899999999999
Q ss_pred EEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeee
Q psy988 177 VSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGI 256 (408)
Q Consensus 177 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 256 (408)
++++.||.|++||++......... .. +.+ ...........+..+...+.++
T Consensus 158 ~~~~~dg~i~~~d~~~~~~~~~~~----~~------------------~~~-------~~~~~~~~~~~~~~~~~~v~~~ 208 (372)
T 1k8k_C 158 AAGSCDFKCRIFSAYIKEVEERPA----PT------------------PWG-------SKMPFGELMFESSSSCGWVHGV 208 (372)
T ss_dssp EEEETTSCEEEEECCCTTTSCCCC----CB------------------TTB-------SCCCTTCEEEECCCCSSCEEEE
T ss_pred EEEcCCCCEEEEEccccccccccc----cc------------------ccc-------cccchhhheEecCCCCCeEEEE
Confidence 999999999999985421110000 00 000 0001112223344667778888
Q ss_pred ccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccc--cCcccc-cc
Q psy988 257 EPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHH--DYAKFS-SV 333 (408)
Q Consensus 257 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~--~~~~~~-~~ 333 (408)
+|+|++++|++++.|+.|++||+++++.+..+..+.. .+.+++|+|++++|++| .|+.|++|++.. +.-... ..
T Consensus 209 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~ 285 (372)
T 1k8k_C 209 CFSANGSRVAWVSHDSTVCLADADKKMAVATLASETL--PLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRL 285 (372)
T ss_dssp EECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSC--CEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCC
T ss_pred EECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCC--CeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeecc
Confidence 8888899999999999999999999999988887654 78899999999999988 899999999987 310000 00
Q ss_pred c-------------------cCccccc------eee-eeeccceEEEEecCCchhhhhccCCCCCCCcc---cEEEEEec
Q psy988 334 R-------------------RDRNDFW------EGI-KAHNAVVTCAVFAPCPELIIAQMEPDKSESTG---YVLVSADF 384 (408)
Q Consensus 334 ~-------------------~~~~~~~------~~~-~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~---~~l~s~~~ 384 (408)
. ....... ..+ .+|...|++++|++. +| ++|+||+.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---------------~g~~~~~l~s~~~ 350 (372)
T 1k8k_C 286 DVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSG---------------GKAKCSQFCTTGM 350 (372)
T ss_dssp CCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEES---------------TTTSCSEEEEEET
T ss_pred CccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecC---------------CCcceeeEEEecC
Confidence 0 0000111 223 489999999997742 66 99999999
Q ss_pred CCeEEEEeCCCCCC
Q psy988 385 NGVIRVFLNKTKPK 398 (408)
Q Consensus 385 dg~v~iw~~~~~~~ 398 (408)
||.|++|++.+++.
T Consensus 351 Dg~i~~W~~~~~~~ 364 (372)
T 1k8k_C 351 DGGMSIWDVRSLES 364 (372)
T ss_dssp TSEEEEEEHHHHHH
T ss_pred CCceEEEEecChhH
Confidence 99999999987553
No 41
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=4.1e-43 Score=322.40 Aligned_cols=357 Identities=14% Similarity=0.174 Sum_probs=266.9
Q ss_pred CCceEEEEeccCC--------eeEeEEE-eCCceEEEEEcCCCCCEEEEEeCC----CcEEEEecCCCCceeeeeecCCc
Q psy988 1 MDKTVRLWHISRK--------ECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLD----GKLRLWNIPDKKVAVWNEVEGQT 67 (408)
Q Consensus 1 ~Dg~i~vwd~~~~--------~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~d----g~i~iw~~~~~~~~~~~~~~~~~ 67 (408)
.||+|+|||+.++ +.+..+. |...|.+++|+| ++++|++++.+ +.|++|| .++.. ..+.+|.
T Consensus 86 ~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~~v~~~d--~~~~~--~~~~~~~ 160 (615)
T 1pgu_A 86 ESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF-EGRRLCVVGEGRDNFGVFISWD--SGNSL--GEVSGHS 160 (615)
T ss_dssp TTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT-TSSEEEEEECCSSCSEEEEETT--TCCEE--EECCSCS
T ss_pred CCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeC-CCCEEEEeccCCCCccEEEEEE--CCCcc--eeeecCC
Confidence 3899999999755 6666666 999999999999 99999999987 6888888 44443 6788999
Q ss_pred eeeEEEEEecCCC-EEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCC---CeEEEeeCCC-CCeEEEeeCCCeEE
Q psy988 68 KLITAANFCENGK-FAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGR---KISGIEPMPG-EDKILVTSNDSRIR 142 (408)
Q Consensus 68 ~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~-~~~l~~~~~dg~i~ 142 (408)
..|.+++|+|+++ .+++++.|+.|++||+.+.+....+. .|.. .|.+++|+|+ +++|++++.||.|+
T Consensus 161 ~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~--------~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 232 (615)
T 1pgu_A 161 QRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDR--------THHKQGSFVRDVEFSPDSGEFVITVGSDRKIS 232 (615)
T ss_dssp SCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEEC--------SSSCTTCCEEEEEECSTTCCEEEEEETTCCEE
T ss_pred ccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeec--------ccCCCCceEEEEEECCCCCCEEEEEeCCCeEE
Confidence 9999999999998 89999999999999998876544332 3445 8999999999 99999999999999
Q ss_pred EEEccCcccceee-c---CccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeeccc----------------
Q psy988 143 LYDLRDLNLSCKY-K---GYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRR---------------- 202 (408)
Q Consensus 143 i~d~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---------------- 202 (408)
+||+++++.+..+ . .+. ..+.+++|+ ++++|++++.|+.|++||++++.........
T Consensus 233 vwd~~~~~~~~~~~~~~~~~~--~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (615)
T 1pgu_A 233 CFDGKSGEFLKYIEDDQEPVQ--GGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGN 309 (615)
T ss_dssp EEETTTCCEEEECCBTTBCCC--SCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEET
T ss_pred EEECCCCCEeEEecccccccC--CceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCC
Confidence 9999999888877 4 444 448899999 9999999999999999999866543221111
Q ss_pred -----------------CCCccccccccccceEEEEEEeCC---------------------------------cceeee
Q psy988 203 -----------------DRNDFWEGIKAHNAVVTCAVFAPC---------------------------------PELIIA 232 (408)
Q Consensus 203 -----------------~~~~~~~~~~~~~~~v~~~~~~~~---------------------------------~~~~~~ 232 (408)
........+..|...|.+++| |+ +..+++
T Consensus 310 ~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~ 388 (615)
T 1pgu_A 310 GRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSS 388 (615)
T ss_dssp TEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEE
T ss_pred CeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEE
Confidence 001223344455555555555 44 333333
Q ss_pred ecCCCCC----------------------------------------CCceeeecCCCceeeeeccCCCCCeEEEecC-C
Q psy988 233 QMEPDKS----------------------------------------ESTGYVLNATGRKISGIEPMPGEDKILVTSN-D 271 (408)
Q Consensus 233 ~~~~~~~----------------------------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d 271 (408)
...+... .........+...+.+++++ ++++++++. |
T Consensus 389 ~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~d 466 (615)
T 1pgu_A 389 ISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLS--QNYVAVGLEEG 466 (615)
T ss_dssp EETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC--SSEEEEEETTT
T ss_pred EeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEc--CCEEEEeecCC
Confidence 2211100 00000000244567777777 888999998 9
Q ss_pred CeEEEEEcCCCeee-eEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeee-ecc
Q psy988 272 SRIRLYDLRDLNLS-CKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKA-HNA 349 (408)
Q Consensus 272 ~~i~i~d~~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~-h~~ 349 (408)
+.|++||+.+++.. ..+..| ...+.+++|+|++++|++++.||.|++||+.++ +.+..+.+ |..
T Consensus 467 ~~i~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~------------~~~~~~~~~h~~ 532 (615)
T 1pgu_A 467 NTIQVFKLSDLEVSFDLKTPL--RAKPSYISISPSETYIAAGDVMGKILLYDLQSR------------EVKTSRWAFRTS 532 (615)
T ss_dssp SCEEEEETTEEEEEEECSSCC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTTT------------EEEECCSCCCSS
T ss_pred CeEEEEECCCccccccccCCc--cCceEEEEECCCCCEEEEcCCCCeEEEeeCCCC------------cceeEeecCCCC
Confidence 99999999987665 333343 448999999999999999999999999999886 55666777 999
Q ss_pred ceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCC
Q psy988 350 VVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTK 396 (408)
Q Consensus 350 ~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 396 (408)
.|++++|+|...... . -..++++|++++.||.|++|++.++
T Consensus 533 ~v~~~~~sp~~~~~~-~-----~~~~~~~l~~~~~dg~i~iw~~~~~ 573 (615)
T 1pgu_A 533 KINAISWKPAEKGAN-E-----EEIEEDLVATGSLDTNIFIYSVKRP 573 (615)
T ss_dssp CEEEEEECCCC------------CCSCCEEEEEETTSCEEEEESSCT
T ss_pred ceeEEEEcCcccccc-c-----cccCCCEEEEEcCCCcEEEEECCCC
Confidence 999999998100000 0 0004789999999999999999987
No 42
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=5.7e-43 Score=297.13 Aligned_cols=286 Identities=15% Similarity=0.271 Sum_probs=220.3
Q ss_pred CCceEEEEeccCCeeEeE--E--EeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEe
Q psy988 1 MDKTVRLWHISRKECLCC--F--QHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFC 76 (408)
Q Consensus 1 ~Dg~i~vwd~~~~~~~~~--~--~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~ 76 (408)
.|++|+|||+.+++.... + +|.+.|.+++|+| ++++|++|+.|++|++|++..+.......+.+|...|.+++|+
T Consensus 36 ~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~s 114 (345)
T 3fm0_A 36 GDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSP-CGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWA 114 (345)
T ss_dssp TTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEEC
T ss_pred CCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECC-CCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEe
Confidence 389999999998865432 2 3999999999999 9999999999999999999888765557899999999999999
Q ss_pred cCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCccc--cee
Q psy988 77 ENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNL--SCK 154 (408)
Q Consensus 77 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~ 154 (408)
|++++|++++.|+.|++||+++......... ...|...|.+++|+|++++|++++.|+.|++||.++++. ...
T Consensus 115 p~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~-----~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~ 189 (345)
T 3fm0_A 115 PSGNLLATCSRDKSVWVWEVDEEDEYECVSV-----LNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCAT 189 (345)
T ss_dssp TTSSEEEEEETTSCEEEEEECTTSCEEEEEE-----ECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEE
T ss_pred CCCCEEEEEECCCeEEEEECCCCCCeEEEEE-----ecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEE
Confidence 9999999999999999999987654322211 235667899999999999999999999999999987753 345
Q ss_pred ecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeec
Q psy988 155 YKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQM 234 (408)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 234 (408)
+.+|.. .+.+++|+|++++|++++.|+.|++||........ .+.. ........++
T Consensus 190 ~~~h~~--~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~---------~~~~-~~~~~~~~~~------------- 244 (345)
T 3fm0_A 190 LEGHES--TVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQ---------GVAC-SGSDPSWKCI------------- 244 (345)
T ss_dssp ECCCSS--CEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTT---------CCCC-C---CEEEEE-------------
T ss_pred ecCCCC--ceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCc---------ccee-eccCCcccee-------------
Confidence 666554 48899999999999999999999999974321100 0000 0000000010
Q ss_pred CCCCCCCceeee-cCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCee----eeEEee---ccceeceeEEEEcCCC
Q psy988 235 EPDKSESTGYVL-NATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNL----SCKYKG---YVNVSSQIKASFSHDG 306 (408)
Q Consensus 235 ~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~----~~~~~~---~~~~~~v~~~~~s~~~ 306 (408)
..+ ..|...|.+++|+|++..|++++.|+.|++|+...... ...+.. ..+...|.+++|+|++
T Consensus 245 ---------~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~ 315 (345)
T 3fm0_A 245 ---------CTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKE 315 (345)
T ss_dssp ---------EEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSS
T ss_pred ---------EEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCC
Confidence 111 13677889999999999999999999999999876431 111111 1234489999999998
Q ss_pred -CEEEEecCCceEEEeecccc
Q psy988 307 -KYIVSGSENQCIYIWKTHHD 326 (408)
Q Consensus 307 -~~l~~~~~dg~i~iw~~~~~ 326 (408)
.+||+|+.||.|++|++.+.
T Consensus 316 ~~~laS~s~Dg~v~~W~~~~~ 336 (345)
T 3fm0_A 316 PGLLASCSDDGEVAFWKYQRP 336 (345)
T ss_dssp TTEEEEEETTSCEEEEEECC-
T ss_pred ceEEEEcCCCCcEEEEEecCC
Confidence 59999999999999999876
No 43
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=9.8e-44 Score=304.48 Aligned_cols=302 Identities=12% Similarity=0.222 Sum_probs=233.2
Q ss_pred eCCceEEEEEcCCCCC-EEEEEeC---CCcEEEEecCCCCceeeeeecCCceeeEEEEEecC---CCEEEEEecCCEEEE
Q psy988 21 HIDFVTAICFHPRDDR-YFLSGSL---DGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCEN---GKFAVVGSYDGRCIF 93 (408)
Q Consensus 21 h~~~v~~~~~sp~~~~-~l~t~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~i 93 (408)
|.+.|.+++|+| ++. ++++|+. ||.|++||+.+++.... ...+|...|.+++|+|+ +++|++++.||.|++
T Consensus 17 h~~~v~~~~~~p-~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i 94 (357)
T 3i2n_A 17 FNYTVFDCKWVP-CSAKFVTMGNFARGTGVIQLYEIQHGDLKLL-REIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHI 94 (357)
T ss_dssp CSSCEEEEEECT-TSSEEEEEEC--CCCEEEEEEEECSSSEEEE-EEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEE
T ss_pred CCCceEEEEEcC-CCceEEEecCccCCCcEEEEEeCCCCcccce-eeecccCcEEEEEEcCCCCCCceEEEecCCCeEEE
Confidence 999999999999 675 5556665 89999999998876542 33378899999999998 699999999999999
Q ss_pred EeccCCe-eeEEEEEeeccccccCCCCeEEE------eeCCCCCeEEEeeCCCeEEEEEccCcc-cceeecCccc--ccc
Q psy988 94 YTTDQLK-YHTQIHVRSTRGKNATGRKISGI------EPMPGEDKILVTSNDSRIRLYDLRDLN-LSCKYKGYVN--VSS 163 (408)
Q Consensus 94 w~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~------~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~--~~~ 163 (408)
||+.+.+ ....+ ..|...|.++ +|+|+++.|++++.||.|++||+++++ ....+..+.. ...
T Consensus 95 wd~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 166 (357)
T 3i2n_A 95 WNLEAPEMPVYSV--------KGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRD 166 (357)
T ss_dssp ECTTSCSSCSEEE--------CCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCC
T ss_pred EeCCCCCccEEEE--------EecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCc
Confidence 9999876 33222 2466789999 567899999999999999999999887 5666655443 234
Q ss_pred ceEEE----EecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCC
Q psy988 164 QIKAS----FSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKS 239 (408)
Q Consensus 164 ~~~~~----~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 239 (408)
+.+++ |+|++++|++++.||.|++||++++... ...
T Consensus 167 v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-------------~~~--------------------------- 206 (357)
T 3i2n_A 167 CWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALR-------------WET--------------------------- 206 (357)
T ss_dssp EEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEE-------------EEE---------------------------
T ss_pred eEEEEEEeccCCCCCEEEEEccCCeEEEEECccCcee-------------eec---------------------------
Confidence 66676 7889999999999999999999764321 112
Q ss_pred CCceeeecCCCceeeeeccCC---CCCeEEEecCCCeEEEEEcCCCeeeeEEe-----eccceeceeEEEEcCCCC-EEE
Q psy988 240 ESTGYVLNATGRKISGIEPMP---GEDKILVTSNDSRIRLYDLRDLNLSCKYK-----GYVNVSSQIKASFSHDGK-YIV 310 (408)
Q Consensus 240 ~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-----~~~~~~~v~~~~~s~~~~-~l~ 310 (408)
.+...+.+++|+| ++.++++++.||.|++||+++++....+. .|. ..+.+++|+|+++ +|+
T Consensus 207 --------~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~ 276 (357)
T 3i2n_A 207 --------NIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHK--STVWQVRHLPQNRELFL 276 (357)
T ss_dssp --------ECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCS--SCEEEEEEETTEEEEEE
T ss_pred --------CCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCc--CCEEEEEECCCCCcEEE
Confidence 2334455666666 67788999999999999999887766554 544 4889999999999 899
Q ss_pred EecCCceEEEeeccccCccccccc-------cCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEE-EE
Q psy988 311 SGSENQCIYIWKTHHDYAKFSSVR-------RDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLV-SA 382 (408)
Q Consensus 311 ~~~~dg~i~iw~~~~~~~~~~~~~-------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-s~ 382 (408)
+++.||.|++||+..+........ ....+.+..+.+|...|++++|+| ++++|+ ++
T Consensus 277 ~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~----------------~~~~l~~s~ 340 (357)
T 3i2n_A 277 TAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSP----------------DKRGLCVCS 340 (357)
T ss_dssp EEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECS----------------SSTTEEEEE
T ss_pred EEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcC----------------CCCeEEEEe
Confidence 999999999999987543211100 001145677889999999999999 888888 89
Q ss_pred ecCCeEEEEeCCCCCC
Q psy988 383 DFNGVIRVFLNKTKPK 398 (408)
Q Consensus 383 ~~dg~v~iw~~~~~~~ 398 (408)
+.||.|++|++.+.+.
T Consensus 341 ~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 341 SFDQTVRVLIVTKLNK 356 (357)
T ss_dssp ETTSEEEEEEECC---
T ss_pred cCCCcEEEEECCCccc
Confidence 9999999999987653
No 44
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=4.2e-43 Score=325.52 Aligned_cols=304 Identities=18% Similarity=0.219 Sum_probs=229.1
Q ss_pred eEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCc---eeeeeecCCceeeEEEEEecCCCEEEEEecCCEEE
Q psy988 17 CCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKV---AVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCI 92 (408)
Q Consensus 17 ~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 92 (408)
..+. |.+.|++++|+|+++++|+||+.|++|++|++.+... .....+.+|...|.+++|+|++++|++|+.||.|+
T Consensus 376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~ 455 (694)
T 3dm0_A 376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELR 455 (694)
T ss_dssp EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEE
Confidence 3444 9999999999995668999999999999999976432 22357889999999999999999999999999999
Q ss_pred EEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeec-CccccccceEEEEec
Q psy988 93 FYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYK-GYVNVSSQIKASFSH 171 (408)
Q Consensus 93 iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~ 171 (408)
+||+.++.....+ ..|...|.+++|+|++++|++++.|+.|++||........... ...+...+.+++|+|
T Consensus 456 vwd~~~~~~~~~~--------~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~ 527 (694)
T 3dm0_A 456 LWDLAAGVSTRRF--------VGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSP 527 (694)
T ss_dssp EEETTTTEEEEEE--------ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECS
T ss_pred EEECCCCcceeEE--------eCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeC
Confidence 9999987654433 2566799999999999999999999999999986543322221 122334588999999
Q ss_pred CC--CEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCC
Q psy988 172 DG--KYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNAT 249 (408)
Q Consensus 172 ~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (408)
++ ..|++++.|+.|++||+++.. ....+. .|
T Consensus 528 ~~~~~~l~s~s~d~~v~vwd~~~~~------------~~~~~~-----------------------------------~h 560 (694)
T 3dm0_A 528 NTLQPTIVSASWDKTVKVWNLSNCK------------LRSTLA-----------------------------------GH 560 (694)
T ss_dssp CSSSCEEEEEETTSCEEEEETTTCC------------EEEEEC-----------------------------------CC
T ss_pred CCCcceEEEEeCCCeEEEEECCCCc------------EEEEEc-----------------------------------CC
Confidence 87 579999999999999986432 112223 44
Q ss_pred CceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCcc
Q psy988 250 GRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAK 329 (408)
Q Consensus 250 ~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 329 (408)
...|.+++|+|++++|++++.|+.|++||+++++.+..+.. ...+.+++|+|++.+|++++ ++.|++||+.++...
T Consensus 561 ~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~---~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~ 636 (694)
T 3dm0_A 561 TGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA---NSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIV 636 (694)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC---SSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEE
T ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC---CCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCCh
Confidence 55566666667777889999999999999999988766654 23688999999999888776 556999999876322
Q ss_pred ccccccCccc-------cceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCC
Q psy988 330 FSSVRRDRND-------FWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKT 395 (408)
Q Consensus 330 ~~~~~~~~~~-------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 395 (408)
.......... .......+...+++++|+| +|++|++|+.||.|++|++..
T Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp----------------dg~~l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 637 EDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSA----------------DGSTLFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp EEECCCCC----------------CCCCEEEEEECT----------------TSSEEEEEETTSEEEEEEC--
T ss_pred hhhccccccccccccccccccCCceeEEeeeEEEcC----------------CCCEEEEEcCCCeEEEEeccC
Confidence 1100000000 0000111222478999999 999999999999999999863
No 45
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-44 Score=318.17 Aligned_cols=313 Identities=11% Similarity=0.072 Sum_probs=224.3
Q ss_pred CCceEEEEeccCCeeE----eEEE-eCCceEEEEEcCC-----CCCEEEEEeCCCcEEEEecCCCCce---------eee
Q psy988 1 MDKTVRLWHISRKECL----CCFQ-HIDFVTAICFHPR-----DDRYFLSGSLDGKLRLWNIPDKKVA---------VWN 61 (408)
Q Consensus 1 ~Dg~i~vwd~~~~~~~----~~~~-h~~~v~~~~~sp~-----~~~~l~t~~~dg~i~iw~~~~~~~~---------~~~ 61 (408)
.|++|+|||+.+++.. ..+. |.+.|.+++|+|. ++.+||+++.||+|++||+.++... ...
T Consensus 181 ~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~ 260 (524)
T 2j04_B 181 HSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSL 260 (524)
T ss_dssp -CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSE
T ss_pred CCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceE
Confidence 3899999999887653 3344 6899999999993 2579999999999999999876422 123
Q ss_pred eecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEE--eeCCCC-CeEEEeeCC
Q psy988 62 EVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGI--EPMPGE-DKILVTSND 138 (408)
Q Consensus 62 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~-~~l~~~~~d 138 (408)
.+.+|...|++++|++++ .|++|+.||+|++||+++...... ....|...|.++ .|+|++ .+|++++.|
T Consensus 261 ~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~-------~~~~H~~~V~sv~~~~s~~g~~~laS~S~D 332 (524)
T 2j04_B 261 TLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSF-------YDQVHDSYILSVSTAYSDFEDTVVSTVAVD 332 (524)
T ss_dssp EECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSE-------EEECSSSCEEEEEEECCTTSCCEEEEEETT
T ss_pred EEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceE-------EeecccccEEEEEEEcCCCCCeEEEEeccC
Confidence 677899999999999864 899999999999999986532111 113566799999 578887 889999999
Q ss_pred CeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceE
Q psy988 139 SRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVV 218 (408)
Q Consensus 139 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 218 (408)
++|++||+++++....+.++.....+.+++|+|+++.+++++.|+.|++||++.+. ....+.+|.
T Consensus 333 ~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~------------~~~~l~gH~--- 397 (524)
T 2j04_B 333 GYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAF------------AVHPLVSRE--- 397 (524)
T ss_dssp SEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTT------------CCEEEEECS---
T ss_pred CeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccc------------cceeeecCC---
Confidence 99999999998887777666543346789999999999999999999999986532 112233444
Q ss_pred EEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeec---ccee
Q psy988 219 TCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGY---VNVS 295 (408)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~---~~~~ 295 (408)
..|.+++|+|++++|++|+.|++|++||+..+ ....+... ....
T Consensus 398 --------------------------------~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~ 444 (524)
T 2j04_B 398 --------------------------------TTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSL 444 (524)
T ss_dssp --------------------------------SCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC------CCCC
T ss_pred --------------------------------CceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccccccCccceeee
Confidence 44555555666677799999999999998654 22221111 1112
Q ss_pred ceeEEEEcCCCCEEEEecCCceEEEeecc-ccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCC
Q psy988 296 SQIKASFSHDGKYIVSGSENQCIYIWKTH-HDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSES 374 (408)
Q Consensus 296 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~ 374 (408)
.+.+++|+|+++.+.. .. .+.+|+.. ++ ..+..+.+|...|.+++|+|+++
T Consensus 445 ~v~~v~~sp~g~~~~~-~~--~~~~~~~~~~g------------~~~~~l~gh~~~V~~Vafsp~~~------------- 496 (524)
T 2j04_B 445 RLWKWDYSIKDDKYRI-DS--SYEVYPLTVND------------VSKAKIDAHGINITCTKWNETSA------------- 496 (524)
T ss_dssp EEEECBCCSSSCEEEE-CC--CCCCCC-------------------------CCCSCCCEEECCSTT-------------
T ss_pred EEEEeccCCCCCeEEc-cC--CceecccccCC------------cceeeecCCCceEEEEECCCCCC-------------
Confidence 4668999999985532 22 23334332 12 46677889999999999999322
Q ss_pred cccEEEEEecCCeEEEEeCCCCC
Q psy988 375 TGYVLVSADFNGVIRVFLNKTKP 397 (408)
Q Consensus 375 ~~~~l~s~~~dg~v~iw~~~~~~ 397 (408)
.+..||+|+.||.||||++....
T Consensus 497 ~~~~lAsg~~~g~vrlw~l~~~~ 519 (524)
T 2j04_B 497 GGKCYAFSNSAGLLTLEYLSLEH 519 (524)
T ss_dssp TTTEEEEECTTSEEEEEECSCC-
T ss_pred ccHHHHhhccCceEEEEEccccc
Confidence 25699999999999999987644
No 46
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=5.6e-43 Score=297.96 Aligned_cols=264 Identities=17% Similarity=0.237 Sum_probs=224.0
Q ss_pred CCceEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCC----ceeeeeecCCceeeEEEEE
Q psy988 1 MDKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKK----VAVWNEVEGQTKLITAANF 75 (408)
Q Consensus 1 ~Dg~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~----~~~~~~~~~~~~~v~~~~~ 75 (408)
.||+|+|||..+++....+. |...|.+++|+| ++.+|++|+.|+.+++|++.... ......+.+|...|.+++|
T Consensus 84 ~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp-~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 162 (354)
T 2pbi_B 84 QDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAP-SGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSF 162 (354)
T ss_dssp TTSEEEEEETTTCCEEEEEECSSSCCCEEEECT-TSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEE
T ss_pred CCCeEEEEECCCCCcceEEecCCCCEEEEEECC-CCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEE
Confidence 38999999999999888887 999999999999 99999999999999999986532 1223567789999999999
Q ss_pred ecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCC--CCCeEEEeeCCCeEEEEEccCcccce
Q psy988 76 CENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMP--GEDKILVTSNDSRIRLYDLRDLNLSC 153 (408)
Q Consensus 76 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~ 153 (408)
+|++..|++++.|++|++||+++++....+. .|...|.++.|+| +++.|++++.||.|++||+++++++.
T Consensus 163 ~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~--------~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~ 234 (354)
T 2pbi_B 163 TNSDMQILTASGDGTCALWDVESGQLLQSFH--------GHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQ 234 (354)
T ss_dssp CSSSSEEEEEETTSEEEEEETTTCCEEEEEE--------CCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEE
T ss_pred eCCCCEEEEEeCCCcEEEEeCCCCeEEEEEc--------CCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence 9999999999999999999999887654432 4567899999987 46899999999999999999999888
Q ss_pred eecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeee
Q psy988 154 KYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQ 233 (408)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 233 (408)
.+..|... +.+++|+|++++|++++.|+.|++||++.+..... +. .
T Consensus 235 ~~~~h~~~--v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~------------~~------------~-------- 280 (354)
T 2pbi_B 235 AFETHESD--VNSVRYYPSGDAFASGSDDATCRLYDLRADREVAI------------YS------------K-------- 280 (354)
T ss_dssp EECCCSSC--EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE------------EC------------C--------
T ss_pred EecCCCCC--eEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEE------------Ec------------C--------
Confidence 88877654 88999999999999999999999999875321110 00 0
Q ss_pred cCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEec
Q psy988 234 MEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS 313 (408)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 313 (408)
..+...+.+++|+|++++|++++.|+.|++||+.+++.+..+.+|.. .|.+++|+|+|++|++|+
T Consensus 281 -------------~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~--~v~~l~~spdg~~l~sgs 345 (354)
T 2pbi_B 281 -------------ESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHEN--RVSTLRVSPDGTAFCSGS 345 (354)
T ss_dssp -------------TTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSS--CEEEEEECTTSSCEEEEE
T ss_pred -------------CCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCC--cEEEEEECCCCCEEEEEc
Confidence 01123466777888888899999999999999999999888888765 899999999999999999
Q ss_pred CCceEEEee
Q psy988 314 ENQCIYIWK 322 (408)
Q Consensus 314 ~dg~i~iw~ 322 (408)
.||.|++|+
T Consensus 346 ~D~~v~vW~ 354 (354)
T 2pbi_B 346 WDHTLRVWA 354 (354)
T ss_dssp TTSEEEEEC
T ss_pred CCCCEEecC
Confidence 999999996
No 47
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.1e-43 Score=305.19 Aligned_cols=316 Identities=13% Similarity=0.163 Sum_probs=243.1
Q ss_pred eCCceEEEEEcCC---CCCEEEEEeCCCcEEEEecCCCCceeeeeec-----CCceeeEEEEEecC----CCEEEEEecC
Q psy988 21 HIDFVTAICFHPR---DDRYFLSGSLDGKLRLWNIPDKKVAVWNEVE-----GQTKLITAANFCEN----GKFAVVGSYD 88 (408)
Q Consensus 21 h~~~v~~~~~sp~---~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~----~~~l~~~~~d 88 (408)
|.+.|++++|+|. +...+++++.++.|++|++.+++.. ..+. .|...|.+++|+|+ +++|++++.|
T Consensus 17 h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d 94 (366)
T 3k26_A 17 HNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEI--RLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSR 94 (366)
T ss_dssp TCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCE--EEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETT
T ss_pred CCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEE--EeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCC
Confidence 9999999999982 2556666777789999999876654 2332 26678999999999 6799999999
Q ss_pred CEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCC-CCCeEEEeeCCCeEEEEEccCcccceee---cCccccccc
Q psy988 89 GRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMP-GEDKILVTSNDSRIRLYDLRDLNLSCKY---KGYVNVSSQ 164 (408)
Q Consensus 89 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~~~~ 164 (408)
|.|++||+.+.+....+. .|...|.+++|+| ++..|++++.||.|++||+++++....+ ..+. ..+
T Consensus 95 g~i~v~d~~~~~~~~~~~--------~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~v 164 (366)
T 3k26_A 95 GIIRIINPITMQCIKHYV--------GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHR--DEV 164 (366)
T ss_dssp CEEEEECTTTCCEEEEEE--------SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCS--SCE
T ss_pred CEEEEEEchhceEeeeec--------CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEeccccccc--Cce
Confidence 999999999877654432 4567999999999 8999999999999999999998887777 3443 458
Q ss_pred eEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCcee
Q psy988 165 IKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGY 244 (408)
Q Consensus 165 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (408)
.+++|+|++++|++++.||.|++||++++.... .+.. .+.++|++..+...... .......
T Consensus 165 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~------------~~~~------~~~~~~~~~~~~~~~~~-~~~~~~~ 225 (366)
T 3k26_A 165 LSADYDLLGEKIMSCGMDHSLKLWRINSKRMMN------------AIKE------SYDYNPNKTNRPFISQK-IHFPDFS 225 (366)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEESCSHHHHH------------HHHH------HHTCCGGGCSSCCCCEE-ECCCSEE
T ss_pred eEEEECCCCCEEEEecCCCCEEEEECCCCcccc------------ccce------eEEecCCCCccccccee-eccCccc
Confidence 899999999999999999999999997643221 1111 12233443333221110 1112223
Q ss_pred eecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCee--------------eeEEeeccceeceeEEEEcCC--CCE
Q psy988 245 VLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNL--------------SCKYKGYVNVSSQIKASFSHD--GKY 308 (408)
Q Consensus 245 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--------------~~~~~~~~~~~~v~~~~~s~~--~~~ 308 (408)
....+...|.+++|+ ++++++++.|+.|++||+.+++. +..+..|.. .+.+++|+|+ +++
T Consensus 226 ~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~~~ 301 (366)
T 3k26_A 226 TRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQC--DIWYMRFSMDFWQKM 301 (366)
T ss_dssp ECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSC--CSSCCCCEECTTSSE
T ss_pred cccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCC--cEEEEEEcCCCCCcE
Confidence 344578889999998 77999999999999999987644 555666544 6888999999 999
Q ss_pred EEEecCCceEEEeeccccCccccccccCccccceeeeee--ccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCC
Q psy988 309 IVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAH--NAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNG 386 (408)
Q Consensus 309 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg 386 (408)
|++|+.||.|++||+.++.... .....+.+| ...|++++|+| ++++|++++.||
T Consensus 302 l~~~~~dg~i~vwd~~~~~~~~--------~~~~~~~~~~~~~~v~~~~~s~----------------~~~~l~s~~~dg 357 (366)
T 3k26_A 302 LALGNQVGKLYVWDLEVEDPHK--------AKCTTLTHHKCGAAIRQTSFSR----------------DSSILIAVCDDA 357 (366)
T ss_dssp EEEECTTSCEEEEECCSSSGGG--------CEEEEECCTTCCSCEEEEEECT----------------TSSEEEEEETTS
T ss_pred EEEEecCCcEEEEECCCCCCcc--------ccceEEcccccCCceEEEEeCC----------------CCCeEEEEeCCC
Confidence 9999999999999998863211 233456667 79999999999 999999999999
Q ss_pred eEEEEeCCC
Q psy988 387 VIRVFLNKT 395 (408)
Q Consensus 387 ~v~iw~~~~ 395 (408)
.|++||+.+
T Consensus 358 ~i~iwd~~~ 366 (366)
T 3k26_A 358 SIWRWDRLR 366 (366)
T ss_dssp EEEEEEC--
T ss_pred EEEEEEecC
Confidence 999999863
No 48
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.9e-43 Score=293.26 Aligned_cols=292 Identities=16% Similarity=0.204 Sum_probs=237.9
Q ss_pred eeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEE
Q psy988 14 ECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCI 92 (408)
Q Consensus 14 ~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 92 (408)
+....+. |.+.|++++| | ++++|++++.||.|++||+.+++.. ..+..|...|.+++|+|++++|++++.||.++
T Consensus 9 ~~~~~l~~h~~~v~~~~~-~-~~~~l~s~~~dg~v~vw~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 84 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVA-V-DDSKVASVSRDGTVRLWSKDDQWLG--TVVYTGQGFLNSVCYDSEKELLLFGGKDTMIN 84 (313)
T ss_dssp EEEEEECCCSSCEEEEEE-E-ETTEEEEEETTSEEEEEEESSSEEE--EEEEECSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred HHHHHhhCCCCCcEEEEe-c-CCCEEEEEEcCCcEEEEECCCCEEE--EEeecCCccEEEEEECCCCCEEEEecCCCeEE
Confidence 6667776 9999999999 8 8999999999999999999887655 67788999999999999999999999999999
Q ss_pred EEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEec-
Q psy988 93 FYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSH- 171 (408)
Q Consensus 93 iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~- 171 (408)
+|++......... .....|...|.++.| +++.+++++.||.|++|| .++....+..+.. .+.++.+.|
T Consensus 85 ~~~~~~~~~~~~~-----~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~--~v~~~~~~~~ 153 (313)
T 3odt_A 85 GVPLFATSGEDPL-----YTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNA--SVWDAKVVSF 153 (313)
T ss_dssp EEETTCCTTSCC------CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSS--CEEEEEEEET
T ss_pred EEEeeecCCCCcc-----cchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCC--ceeEEEEccC
Confidence 9998765322111 112356679999999 578999999999999999 5566666666554 477888888
Q ss_pred CCCEEEEeecCceEEEeeeccceeeeeecccCCCcccccccc-ccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCC
Q psy988 172 DGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKA-HNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATG 250 (408)
Q Consensus 172 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (408)
+++++++++.||.|++||.... ...+.. +...+.+++|+|
T Consensus 154 ~~~~l~~~~~d~~i~i~d~~~~--------------~~~~~~~~~~~i~~~~~~~------------------------- 194 (313)
T 3odt_A 154 SENKFLTASADKTIKLWQNDKV--------------IKTFSGIHNDVVRHLAVVD------------------------- 194 (313)
T ss_dssp TTTEEEEEETTSCEEEEETTEE--------------EEEECSSCSSCEEEEEEEE-------------------------
T ss_pred CCCEEEEEECCCCEEEEecCce--------------EEEEeccCcccEEEEEEcC-------------------------
Confidence 9999999999999999994321 112222 444555555555
Q ss_pred ceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccc
Q psy988 251 RKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKF 330 (408)
Q Consensus 251 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 330 (408)
++. +++++.|+.|++||+++++.+..+..|.. .+.+++|+|++ .|++++.||.|++||+.++
T Consensus 195 ----------~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~---- 256 (313)
T 3odt_A 195 ----------DGH-FISCSNDGLIKLVDMHTGDVLRTYEGHES--FVYCIKLLPNG-DIVSCGEDRTVRIWSKENG---- 256 (313)
T ss_dssp ----------TTE-EEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEECTTS-CEEEEETTSEEEEECTTTC----
T ss_pred ----------CCe-EEEccCCCeEEEEECCchhhhhhhhcCCc--eEEEEEEecCC-CEEEEecCCEEEEEECCCC----
Confidence 444 67889999999999999999999987765 78999999999 6889999999999999887
Q ss_pred cccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCCCcccc
Q psy988 331 SSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKPKHSSL 402 (408)
Q Consensus 331 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 402 (408)
+.+..+..|...|.+++|+| +++ +++++.||.|++|++.+++.....
T Consensus 257 --------~~~~~~~~~~~~i~~~~~~~----------------~~~-~~~~~~dg~i~iw~~~~~~~~~~~ 303 (313)
T 3odt_A 257 --------SLKQVITLPAISIWSVDCMS----------------NGD-IIVGSSDNLVRIFSQEKSRWASED 303 (313)
T ss_dssp --------CEEEEEECSSSCEEEEEECT----------------TSC-EEEEETTSCEEEEESCGGGCCC--
T ss_pred --------ceeEEEeccCceEEEEEEcc----------------CCC-EEEEeCCCcEEEEeCCCCceeehh
Confidence 56777888999999999999 887 667899999999999987765443
No 49
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=2.1e-43 Score=309.16 Aligned_cols=307 Identities=12% Similarity=0.139 Sum_probs=252.2
Q ss_pred eEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEE
Q psy988 25 VTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQ 104 (408)
Q Consensus 25 v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 104 (408)
+++++|+| ++++|++++.||.|++||+.+++.. ..+..| ..+....|++++++|++++.||.|++||+.+.+....
T Consensus 59 ~~~~~~s~-~g~~l~~~~~d~~v~i~d~~~~~~~--~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 134 (420)
T 3vl1_A 59 GKGNTFEK-VGSHLYKARLDGHDFLFNTIIRDGS--KMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREI 134 (420)
T ss_dssp CTTCEEEE-EETTEEEEEETTEEEEEECCSEETT--TTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEE
T ss_pred ccceeeee-cCCeEEEEEcCCcEEEEEeccccee--eEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeee
Confidence 45799999 9999999999999999999887655 345555 4555667899999999999999999999987654321
Q ss_pred EEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecCce
Q psy988 105 IHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQC 184 (408)
Q Consensus 105 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 184 (408)
...|...|.+++|+|++++|++++.|+.|++||+++++....+.+|... +.+++|+|++++|++++.||.
T Consensus 135 --------~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~--v~~~~~~~~~~~l~s~~~d~~ 204 (420)
T 3vl1_A 135 --------DQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRAT--VTDIAIIDRGRNVLSASLDGT 204 (420)
T ss_dssp --------TTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSC--EEEEEEETTTTEEEEEETTSC
T ss_pred --------cccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCc--EEEEEEcCCCCEEEEEcCCCc
Confidence 2356789999999999999999999999999999999988888776654 889999999999999999999
Q ss_pred EEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCe
Q psy988 185 IYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDK 264 (408)
Q Consensus 185 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 264 (408)
|++||++++..... +.....+...+.++.+.|.+... ....+...+.+++|+|++++
T Consensus 205 v~iwd~~~~~~~~~---------~~~~~~~~~~v~~~~~~~~~~~~--------------~~~~~~~~v~~~~~s~~~~~ 261 (420)
T 3vl1_A 205 IRLWECGTGTTIHT---------FNRKENPHDGVNSIALFVGTDRQ--------------LHEISTSKKNNLEFGTYGKY 261 (420)
T ss_dssp EEEEETTTTEEEEE---------ECBTTBTTCCEEEEEEEECCCSS--------------CGGGCCCCCCTTCSSCTTEE
T ss_pred EEEeECCCCceeEE---------eecCCCCCCCccEEEEecCCcce--------------eeecccCcccceEEcCCCCE
Confidence 99999987644322 11123567789999998876543 22345678899999999999
Q ss_pred EEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCC-EEEEecCCceEEEeeccccCccccccccCcccccee
Q psy988 265 ILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGK-YIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEG 343 (408)
Q Consensus 265 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 343 (408)
|++++.||.|++||+++++....+... +...+.+++|+|+++ +|++|+.||.|++||+.++. .++..
T Consensus 262 l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~-----------~~~~~ 329 (420)
T 3vl1_A 262 VIAGHVSGVITVHNVFSKEQTIQLPSK-FTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPE-----------CPVGE 329 (420)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEECCT-TSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT-----------SCSEE
T ss_pred EEEEcCCCeEEEEECCCCceeEEcccc-cCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCc-----------Cchhh
Confidence 999999999999999999887777542 234789999999999 99999999999999998752 23555
Q ss_pred eee-eccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCC
Q psy988 344 IKA-HNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKP 397 (408)
Q Consensus 344 ~~~-h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 397 (408)
+.+ |...|.++.| + ++++|++++.||.|++|++....
T Consensus 330 ~~~~~~~~v~~~~~-~----------------~~~~l~s~~~d~~v~iw~~~~~~ 367 (420)
T 3vl1_A 330 FLINEGTPINNVYF-A----------------AGALFVSSGFDTSIKLDIISDPE 367 (420)
T ss_dssp EEESTTSCEEEEEE-E----------------TTEEEEEETTTEEEEEEEECCTT
T ss_pred hhccCCCCceEEEe-C----------------CCCEEEEecCCccEEEEeccCCC
Confidence 666 6677888855 4 67899999999999999998753
No 50
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2.2e-43 Score=300.62 Aligned_cols=266 Identities=14% Similarity=0.163 Sum_probs=207.2
Q ss_pred CceEEEEeccCCeeE-----eEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceee--eeecCCceeeEEEE
Q psy988 2 DKTVRLWHISRKECL-----CCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW--NEVEGQTKLITAAN 74 (408)
Q Consensus 2 Dg~i~vwd~~~~~~~-----~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~--~~~~~~~~~v~~~~ 74 (408)
|++|++|+..++... ...+|...|.+++|+| ++. +++++.||+|+|||+.+++.... ....+|...|.+++
T Consensus 69 d~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~-d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~ 146 (357)
T 4g56_B 69 GGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVS-EKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLS 146 (357)
T ss_dssp CEEEEEESSCC---CGGGCSEEEECSSCEEEEEEET-TTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEE
T ss_pred cCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcC-CCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEE
Confidence 789999998776543 3446999999999999 765 66778899999999988765432 24458999999999
Q ss_pred EecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCC-eEEEeeCCCeEEEEEccCcccce
Q psy988 75 FCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGED-KILVTSNDSRIRLYDLRDLNLSC 153 (408)
Q Consensus 75 ~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~ 153 (408)
|+|++++|++++.|+.|++||+++++....+ ..|...|.+++|+|++. .+++++.|+.|++||+++++...
T Consensus 147 ~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~--------~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~ 218 (357)
T 4g56_B 147 VFSDGTQAVSGGKDFSVKVWDLSQKAVLKSY--------NAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPAT 218 (357)
T ss_dssp ECSSSSEEEEEETTSCEEEEETTTTEEEEEE--------CCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBC
T ss_pred ECCCCCEEEEEeCCCeEEEEECCCCcEEEEE--------cCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceee
Confidence 9999999999999999999999988765443 24667999999999875 78899999999999999998877
Q ss_pred eecCccccccceEEEEecCC-CEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeee
Q psy988 154 KYKGYVNVSSQIKASFSHDG-KYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIA 232 (408)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 232 (408)
.+........+.+++|+|++ .+|++|+.|+.|++||++++ .....+..|...|.+++|+|++.
T Consensus 219 ~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~------------~~~~~~~~~~~~v~~l~~sp~~~---- 282 (357)
T 4g56_B 219 RIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP------------DSAQTSAVHSQNITGLAYSYHSS---- 282 (357)
T ss_dssp BCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG------------GGCEEECCCSSCEEEEEECSSSS----
T ss_pred eeeeccccccccchhhhhcccceEEEeecccceeEEECCCC------------cEeEEEeccceeEEEEEEcCCCC----
Confidence 76665566668899999974 67889999999999999754 22334455556666666655543
Q ss_pred ecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcC-CCCEEEE
Q psy988 233 QMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSH-DGKYIVS 311 (408)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~ 311 (408)
++|++++.|++|+|||+++++++..+ +|.. .|++++|+| ++++|++
T Consensus 283 ------------------------------~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~--~V~~vafsP~d~~~l~s 329 (357)
T 4g56_B 283 ------------------------------PFLASISEDCTVAVLDADFSEVFRDL-SHRD--FVTGVAWSPLDHSKFTT 329 (357)
T ss_dssp ------------------------------CCEEEEETTSCEEEECTTSCEEEEEC-CCSS--CEEEEEECSSSTTEEEE
T ss_pred ------------------------------CEEEEEeCCCEEEEEECCCCcEeEEC-CCCC--CEEEEEEeCCCCCEEEE
Confidence 35789999999999999998877554 4544 899999998 8999999
Q ss_pred ecCCceEEEeecccc
Q psy988 312 GSENQCIYIWKTHHD 326 (408)
Q Consensus 312 ~~~dg~i~iw~~~~~ 326 (408)
|+.||+|++|++...
T Consensus 330 ~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 330 VGWDHKVLHHHLPSE 344 (357)
T ss_dssp EETTSCEEEEECC--
T ss_pred EcCCCeEEEEECCCC
Confidence 999999999999764
No 51
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1e-42 Score=301.03 Aligned_cols=275 Identities=19% Similarity=0.333 Sum_probs=221.0
Q ss_pred CceEEEEeccCCeeEeEEE-eC------------------CceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeee
Q psy988 2 DKTVRLWHISRKECLCCFQ-HI------------------DFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNE 62 (408)
Q Consensus 2 Dg~i~vwd~~~~~~~~~~~-h~------------------~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~ 62 (408)
|++++||++.+++.+..+. |. ..|.+++|+| ++++|++|+.|+.|++||+.+++.. ..
T Consensus 84 ~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-dg~~l~s~~~d~~i~iwd~~~~~~~--~~ 160 (393)
T 1erj_A 84 NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP-DGKFLATGAEDRLIRIWDIENRKIV--MI 160 (393)
T ss_dssp BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEE--EE
T ss_pred CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEE--EE
Confidence 6789999999999887775 32 2499999999 9999999999999999999988765 67
Q ss_pred ecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCC-CCCeEEEeeCCCeE
Q psy988 63 VEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMP-GEDKILVTSNDSRI 141 (408)
Q Consensus 63 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i 141 (408)
+.+|...|.+++|+|++++|++++.|++|++||+++++...... +...+.+++|+| ++++|++++.|+.|
T Consensus 161 ~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~---------~~~~v~~~~~~~~~~~~l~~~s~d~~v 231 (393)
T 1erj_A 161 LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS---------IEDGVTTVAVSPGDGKYIAAGSLDRAV 231 (393)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE---------CSSCEEEEEECSTTCCEEEEEETTSCE
T ss_pred EccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE---------cCCCcEEEEEECCCCCEEEEEcCCCcE
Confidence 89999999999999999999999999999999999887544332 234799999999 88999999999999
Q ss_pred EEEEccCcccceeecC-----ccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccc
Q psy988 142 RLYDLRDLNLSCKYKG-----YVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNA 216 (408)
Q Consensus 142 ~i~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (408)
++||+++++.+..+.. ..+...+.+++|+|++++|++++.|+.|++||++.............
T Consensus 232 ~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~------------ 299 (393)
T 1erj_A 232 RVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNS------------ 299 (393)
T ss_dssp EEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--------------------------
T ss_pred EEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCC------------
Confidence 9999999887666521 12334588999999999999999999999999975322110000000
Q ss_pred eEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceec
Q psy988 217 VVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSS 296 (408)
Q Consensus 217 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 296 (408)
......+..|...|.+++++|++.+|++++.|+.|++||+.+++++..+.+|.. .
T Consensus 300 -----------------------~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~--~ 354 (393)
T 1erj_A 300 -----------------------GTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN--S 354 (393)
T ss_dssp ------------------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSS--C
T ss_pred -----------------------CcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCC--C
Confidence 011122335666777888888888899999999999999999999999988766 7
Q ss_pred eeEEEEcC------CCCEEEEecCCceEEEeeccc
Q psy988 297 QIKASFSH------DGKYIVSGSENQCIYIWKTHH 325 (408)
Q Consensus 297 v~~~~~s~------~~~~l~~~~~dg~i~iw~~~~ 325 (408)
|.+++|++ ++++|++|+.||.|++|++..
T Consensus 355 v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 355 VISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp EEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred EEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 88998876 688999999999999999865
No 52
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.1e-44 Score=310.84 Aligned_cols=317 Identities=12% Similarity=0.080 Sum_probs=225.2
Q ss_pred eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCe
Q psy988 21 HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLK 100 (408)
Q Consensus 21 h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 100 (408)
|.++|++++|+| ++++|++|+.|+.|++||+.++.......+.+|...|.+++|+|++++|++++.||.|++||+.+.+
T Consensus 10 ~~~~v~~~~~s~-~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~ 88 (377)
T 3dwl_C 10 LPKPSYEHAFNS-QRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDG 88 (377)
T ss_dssp CSSCCSCCEECS-SSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------
T ss_pred CCCcEEEEEECC-CCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Confidence 778999999999 9999999999999999999987433447888999999999999999999999999999999998765
Q ss_pred eeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCccc---ceeecC-ccccccceEEEEecCCCEE
Q psy988 101 YHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNL---SCKYKG-YVNVSSQIKASFSHDGKYI 176 (408)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~l 176 (408)
.... ......|...|.+++|+|++++|++++.|+.|++||+++++. ...+.. |. ..+.+++|+|++++|
T Consensus 89 ~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~l 161 (377)
T 3dwl_C 89 TWKQ-----TLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLR--STILSLDWHPNNVLL 161 (377)
T ss_dssp CCCC-----EEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCC--SCEEEEEECTTSSEE
T ss_pred ceee-----eeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccC--CCeEEEEEcCCCCEE
Confidence 1111 111234667999999999999999999999999999998763 555555 44 458899999999999
Q ss_pred EEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeee
Q psy988 177 VSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGI 256 (408)
Q Consensus 177 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 256 (408)
++++.|+.|++||+............ ..+... ........+ .|...|.++
T Consensus 162 ~~~~~d~~i~iwd~~~~~~~~~~~~~--------~~~~~~---------------------~~~~~~~~~-~~~~~v~~~ 211 (377)
T 3dwl_C 162 AAGCADRKAYVLSAYVRDVDAKPEAS--------VWGSRL---------------------PFNTVCAEY-PSGGWVHAV 211 (377)
T ss_dssp EEEESSSCEEEEEECCSSCC-CCCSC--------SSCSCC---------------------CEEEEEECC-CCSSSEEEE
T ss_pred EEEeCCCEEEEEEEEecccCCCcccc--------cccccc---------------------chhhhhhcc-cCCceEEEE
Confidence 99999999999999643211100000 000000 000111122 566778888
Q ss_pred ccCCCCCeEEEecCCCeEEEEEcCCCee----eeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccC-cccc
Q psy988 257 EPMPGEDKILVTSNDSRIRLYDLRDLNL----SCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDY-AKFS 331 (408)
Q Consensus 257 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~----~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~-~~~~ 331 (408)
+|+|++++|++++.|+.|++||+.+++. +..+..|.. .+.+++|+|++++|++|+.++.+ +|+..... ....
T Consensus 212 ~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~ 288 (377)
T 3dwl_C 212 GFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQL--PLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTR 288 (377)
T ss_dssp EECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSS--CEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSB
T ss_pred EECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCC--ceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEe
Confidence 8888899999999999999999999887 667777655 78999999999999999877766 66554221 1111
Q ss_pred ccccCcc---------------------------------------ccceeeeeeccceEEEEecCCchhhhhccCCCCC
Q psy988 332 SVRRDRN---------------------------------------DFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKS 372 (408)
Q Consensus 332 ~~~~~~~---------------------------------------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~ 372 (408)
....... ........|.+.|+++++.+.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~------------- 355 (377)
T 3dwl_C 289 DLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAG------------- 355 (377)
T ss_dssp CCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEE-------------
T ss_pred eecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCC-------------
Confidence 0000000 001112249999999998762
Q ss_pred CCccc---EEEEEecCCeEEEEeC
Q psy988 373 ESTGY---VLVSADFNGVIRVFLN 393 (408)
Q Consensus 373 s~~~~---~l~s~~~dg~v~iw~~ 393 (408)
++. .|+|||.||.|++||+
T Consensus 356 --~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 356 --TPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp --ETTEEEEEEEEETTSEEEEECC
T ss_pred --CCCceEEEEeecCCCcEEEecC
Confidence 223 6999999999999986
No 53
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=2.2e-43 Score=307.94 Aligned_cols=330 Identities=16% Similarity=0.202 Sum_probs=252.5
Q ss_pred CceEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeee-----------cCCcee
Q psy988 2 DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEV-----------EGQTKL 69 (408)
Q Consensus 2 Dg~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~-----------~~~~~~ 69 (408)
|+.+++|+++.++....+. |.+.|++++|+|.++++|++|+.||.|++||+.++........ .+|...
T Consensus 22 ~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (408)
T 4a11_B 22 ESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYS 101 (408)
T ss_dssp HHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSC
T ss_pred cCcceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCc
Confidence 4567889888888777776 9999999999997788999999999999999998765532221 359999
Q ss_pred eEEEEEec-CCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCC---CCeEEEeeCCCeEEEEE
Q psy988 70 ITAANFCE-NGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPG---EDKILVTSNDSRIRLYD 145 (408)
Q Consensus 70 v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~i~d 145 (408)
|.+++|+| ++.+|++++.||.|++||+.+.+...... +...+.++.++|. +..+++++.++.|++||
T Consensus 102 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d 172 (408)
T 4a11_B 102 VETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN---------FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCD 172 (408)
T ss_dssp EEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE---------CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEE
T ss_pred EEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc---------CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEe
Confidence 99999999 78899999999999999999887655443 2347888998884 44899999999999999
Q ss_pred ccCcccceeecCccccccceEEEEecCCCE-EEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEe
Q psy988 146 LRDLNLSCKYKGYVNVSSQIKASFSHDGKY-IVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFA 224 (408)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 224 (408)
+++++....+..+... +.+++|+|++++ |++++.||.|++||++........ +..+..
T Consensus 173 ~~~~~~~~~~~~~~~~--v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~-----------~~~~~~-------- 231 (408)
T 4a11_B 173 LKSGSCSHILQGHRQE--ILAVSWSPRYDYILATASADSRVKLWDVRRASGCLIT-----------LDQHNG-------- 231 (408)
T ss_dssp SSSSCCCEEECCCCSC--EEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEE-----------CCTTTT--------
T ss_pred CCCcceeeeecCCCCc--EEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccc-----------cccccc--------
Confidence 9999988888876654 889999999984 889999999999999764322111 110000
Q ss_pred CCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccce---eceeEEE
Q psy988 225 PCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNV---SSQIKAS 301 (408)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~---~~v~~~~ 301 (408)
............+...|.+++|+|++++|++++.|+.|++||+.+++....+..+... ..+....
T Consensus 232 ------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (408)
T 4a11_B 232 ------------KKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTV 299 (408)
T ss_dssp ------------CSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEE
T ss_pred ------------ccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEE
Confidence 0011112223456777888888888999999999999999999998766554332211 1111122
Q ss_pred EcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEE
Q psy988 302 FSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVS 381 (408)
Q Consensus 302 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s 381 (408)
....+..+++++.++.|++||+.++ +.+..+.+|...|++++|+| ++++|++
T Consensus 300 ~~~~~~~~~~~~~~~~i~v~d~~~~------------~~~~~~~~~~~~v~~~~~s~----------------~~~~l~s 351 (408)
T 4a11_B 300 SCGCSSEFVFVPYGSTIAVYTVYSG------------EQITMLKGHYKTVDCCVFQS----------------NFQELYS 351 (408)
T ss_dssp CCSSSSCEEEEEETTEEEEEETTTC------------CEEEEECCCSSCEEEEEEET----------------TTTEEEE
T ss_pred ecCCCceEEEEecCCEEEEEECcCC------------cceeeeccCCCeEEEEEEcC----------------CCCEEEE
Confidence 2334556777788999999999887 67778889999999999999 9999999
Q ss_pred EecCCeEEEEeCCCCCCccc
Q psy988 382 ADFNGVIRVFLNKTKPKHSS 401 (408)
Q Consensus 382 ~~~dg~v~iw~~~~~~~~~~ 401 (408)
++.||.|++|++.+++....
T Consensus 352 ~~~dg~i~iw~~~~~~~~~~ 371 (408)
T 4a11_B 352 GSRDCNILAWVPSLYEPVPD 371 (408)
T ss_dssp EETTSCEEEEEECC------
T ss_pred ECCCCeEEEEeCCCCCccCC
Confidence 99999999999999876554
No 54
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.8e-42 Score=290.80 Aligned_cols=263 Identities=18% Similarity=0.325 Sum_probs=213.7
Q ss_pred CCceEEEEeccC-----CeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEE
Q psy988 1 MDKTVRLWHISR-----KECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAAN 74 (408)
Q Consensus 1 ~Dg~i~vwd~~~-----~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~ 74 (408)
.|++|++||+.+ +.++..+. |...|.+++|+| ++++|++|+.|++|++||+.+++.. ..+.+|...|.+++
T Consensus 38 ~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-dg~~l~s~s~D~~v~~wd~~~~~~~--~~~~~h~~~v~~~~ 114 (319)
T 3frx_A 38 RDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTA-DGAYALSASWDKTLRLWDVATGETY--QRFVGHKSDVMSVD 114 (319)
T ss_dssp TTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEE--EEEECCSSCEEEEE
T ss_pred CCccEEEecCCCCCccccccceEEeCCcccEEEEEECC-CCCEEEEEeCCCEEEEEECCCCCee--EEEccCCCcEEEEE
Confidence 389999999864 23455665 999999999999 9999999999999999999998766 68899999999999
Q ss_pred EecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCC------CCeEEEeeCCCeEEEEEccC
Q psy988 75 FCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPG------EDKILVTSNDSRIRLYDLRD 148 (408)
Q Consensus 75 ~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~dg~i~i~d~~~ 148 (408)
|+|++.+|++++.|++|++||++.... . . ..+|...+.++.+.|. +..+++++.|+.|++||+++
T Consensus 115 ~~~~~~~l~s~s~D~~i~vwd~~~~~~-~-----~---~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 185 (319)
T 3frx_A 115 IDKKASMIISGSRDKTIKVWTIKGQCL-A-----T---LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ 185 (319)
T ss_dssp ECTTSCEEEEEETTSCEEEEETTSCEE-E-----E---ECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTT
T ss_pred EcCCCCEEEEEeCCCeEEEEECCCCeE-E-----E---EeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCc
Confidence 999999999999999999999975422 1 1 1246678999999985 44899999999999999999
Q ss_pred cccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcc
Q psy988 149 LNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPE 228 (408)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 228 (408)
.+....+.+|... +.+++|+|++++|++++.||.|++||+.+..... .+. +
T Consensus 186 ~~~~~~~~~h~~~--v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~------------~~~-~-------------- 236 (319)
T 3frx_A 186 FQIEADFIGHNSN--INTLTASPDGTLIASAGKDGEIMLWNLAAKKAMY------------TLS-A-------------- 236 (319)
T ss_dssp TEEEEEECCCCSC--EEEEEECTTSSEEEEEETTCEEEEEETTTTEEEE------------EEE-C--------------
T ss_pred chhheeecCCCCc--EEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE------------Eec-C--------------
Confidence 8888888877654 8899999999999999999999999997643221 111 1
Q ss_pred eeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeec------cceeceeEEEE
Q psy988 229 LIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGY------VNVSSQIKASF 302 (408)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~------~~~~~v~~~~~ 302 (408)
...+.+++|+|++.++++++.+ .+++|++..+.....+..+ .....+.+++|
T Consensus 237 ---------------------~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 294 (319)
T 3frx_A 237 ---------------------QDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAW 294 (319)
T ss_dssp ---------------------CSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEE
T ss_pred ---------------------CCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEE
Confidence 1235556666666667776654 5999999988777666532 12346789999
Q ss_pred cCCCCEEEEecCCceEEEeecccc
Q psy988 303 SHDGKYIVSGSENQCIYIWKTHHD 326 (408)
Q Consensus 303 s~~~~~l~~~~~dg~i~iw~~~~~ 326 (408)
+|||++|++|+.||.|++||+.+.
T Consensus 295 spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 295 SADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp CTTSSEEEEEETTSCEEEEEEEEC
T ss_pred CCCCCEEEEeecCceEEEEEEeec
Confidence 999999999999999999998763
No 55
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=2.1e-42 Score=295.37 Aligned_cols=295 Identities=13% Similarity=0.071 Sum_probs=216.2
Q ss_pred EeCCceEEEEEcCCCCCEEEEEeCCC-------cEEEEecCCCCcee--------eeeecCCceeeEEEEEecCCCEEEE
Q psy988 20 QHIDFVTAICFHPRDDRYFLSGSLDG-------KLRLWNIPDKKVAV--------WNEVEGQTKLITAANFCENGKFAVV 84 (408)
Q Consensus 20 ~h~~~v~~~~~sp~~~~~l~t~~~dg-------~i~iw~~~~~~~~~--------~~~~~~~~~~v~~~~~~~~~~~l~~ 84 (408)
...-+|++++|+| ++++|++|+.+. .|++|++..+.... ...+.+|...|.++++ +++.+++
T Consensus 12 ~~g~PV~sv~fs~-dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~--~~~~~~~ 88 (365)
T 4h5i_A 12 NVGYPAYGAKFLN-NDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDA--SKGIILV 88 (365)
T ss_dssp ECSSCEEEEEEEE-TTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEE--ETTEEEE
T ss_pred CCCCCEEEEEEeC-CCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEe--CCCEEEE
Confidence 3456899999999 999999997543 59999997654321 1246678888888766 4556666
Q ss_pred E-----------ecCCEEEEEeccCCeeeEEE-EEeeccccccCCCCeEEEeeCCCCCeEEEe--eCCCeEEEEEccCcc
Q psy988 85 G-----------SYDGRCIFYTTDQLKYHTQI-HVRSTRGKNATGRKISGIEPMPGEDKILVT--SNDSRIRLYDLRDLN 150 (408)
Q Consensus 85 ~-----------~~dg~i~iw~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~dg~i~i~d~~~~~ 150 (408)
+ +.|+.+++|++......... ..........+...+.+++|+|||++++++ +.|+.|++||+++++
T Consensus 89 g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~ 168 (365)
T 4h5i_A 89 GCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLT 168 (365)
T ss_dssp ECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTE
T ss_pred EECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCc
Confidence 5 45788999998765443322 222222333445578999999999998765 468999999999998
Q ss_pred cceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCccee
Q psy988 151 LSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELI 230 (408)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 230 (408)
.+..+.. . ..+.+++|+|+|+++++++.++ +++|+..++..... .....|...+.+++|+|+
T Consensus 169 ~~~~~~~-~--~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~~~~----------~~~~~~~~~v~~v~fspd---- 230 (365)
T 4h5i_A 169 EKFEIET-R--GEVKDLHFSTDGKVVAYITGSS-LEVISTVTGSCIAR----------KTDFDKNWSLSKINFIAD---- 230 (365)
T ss_dssp EEEEEEC-S--SCCCEEEECTTSSEEEEECSSC-EEEEETTTCCEEEE----------ECCCCTTEEEEEEEEEET----
T ss_pred EEEEeCC-C--CceEEEEEccCCceEEecccee-EEEEEeccCcceee----------eecCCCCCCEEEEEEcCC----
Confidence 8877753 2 3488999999999999998654 66666554322211 122344555555555555
Q ss_pred eeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCC----eEEEEEcCCCeee----eEEeeccceeceeEEEE
Q psy988 231 IAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDS----RIRLYDLRDLNLS----CKYKGYVNVSSQIKASF 302 (408)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~----~i~i~d~~~~~~~----~~~~~~~~~~~v~~~~~ 302 (408)
++++++++.|+ .+++|++...... ..+.+| ...|++++|
T Consensus 231 -------------------------------g~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~V~~~~~ 277 (365)
T 4h5i_A 231 -------------------------------DTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNR--FKGITSMDV 277 (365)
T ss_dssp -------------------------------TEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESS--CSCEEEEEE
T ss_pred -------------------------------CCEEEEEecCCcceeEEeecccccceecceeeeeecCC--CCCeEeEEE
Confidence 45556666665 6888998766532 233343 447999999
Q ss_pred cCCCCEEEEecCCceEEEeeccccCccccccccCcccccee-eeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEE
Q psy988 303 SHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEG-IKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVS 381 (408)
Q Consensus 303 s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s 381 (408)
+|||++||+|+.|+.|+|||+.++ +++.. +.+|...|++++|+| ||++|||
T Consensus 278 Spdg~~lasgs~D~~V~iwd~~~~------------~~~~~~~~gH~~~V~~v~fSp----------------dg~~laS 329 (365)
T 4h5i_A 278 DMKGELAVLASNDNSIALVKLKDL------------SMSKIFKQAHSFAITEVTISP----------------DSTYVAS 329 (365)
T ss_dssp CTTSCEEEEEETTSCEEEEETTTT------------EEEEEETTSSSSCEEEEEECT----------------TSCEEEE
T ss_pred CCCCCceEEEcCCCEEEEEECCCC------------cEEEEecCcccCCEEEEEECC----------------CCCEEEE
Confidence 999999999999999999999886 55555 478999999999999 9999999
Q ss_pred EecCCeEEEEeCCCC
Q psy988 382 ADFNGVIRVFLNKTK 396 (408)
Q Consensus 382 ~~~dg~v~iw~~~~~ 396 (408)
|+.|++||||+++..
T Consensus 330 ~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 330 VSAANTIHIIKLPLN 344 (365)
T ss_dssp EETTSEEEEEECCTT
T ss_pred EeCCCeEEEEEcCCC
Confidence 999999999999754
No 56
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=4.1e-42 Score=325.69 Aligned_cols=354 Identities=16% Similarity=0.207 Sum_probs=280.9
Q ss_pred eEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEE
Q psy988 15 CLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIF 93 (408)
Q Consensus 15 ~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 93 (408)
..+.+. |.+.|.+++|+| ++++|++++.||.|++||+.+++.. ..+.+|...|.+++|+|++++|++++.||.|++
T Consensus 5 ~~~~~~~h~~~v~~i~~sp-~~~~la~~~~~g~v~iwd~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v 81 (814)
T 3mkq_A 5 IKKTFSNRSDRVKGIDFHP-TEPWVLTTLYSGRVEIWNYETQVEV--RSIQVTETPVRAGKFIARKNWIIVGSDDFRIRV 81 (814)
T ss_dssp CEEEEEEECSCEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEE--EEEECCSSCEEEEEEEGGGTEEEEEETTSEEEE
T ss_pred cceeeecCCCceEEEEECC-CCCEEEEEeCCCEEEEEECCCCceE--EEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEE
Confidence 344454 999999999999 9999999999999999999988766 688899999999999999999999999999999
Q ss_pred EeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCc-ccceeecCccccccceEEEEec-
Q psy988 94 YTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDL-NLSCKYKGYVNVSSQIKASFSH- 171 (408)
Q Consensus 94 w~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~- 171 (408)
||+.+++...... .|...|.+++|+|++++|++++.||.|++||++++ .....+..+.. .+.+++|+|
T Consensus 82 w~~~~~~~~~~~~--------~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~--~v~~~~~~p~ 151 (814)
T 3mkq_A 82 FNYNTGEKVVDFE--------AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEH--FVMCVAFNPK 151 (814)
T ss_dssp EETTTCCEEEEEE--------CCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSS--CEEEEEEETT
T ss_pred EECCCCcEEEEEe--------cCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCC--cEEEEEEEcC
Confidence 9999887654432 45678999999999999999999999999999886 55556666554 488999999
Q ss_pred CCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccc-cccceEEEEEEeC--CcceeeeecCCC-------CCCC
Q psy988 172 DGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIK-AHNAVVTCAVFAP--CPELIIAQMEPD-------KSES 241 (408)
Q Consensus 172 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~--~~~~~~~~~~~~-------~~~~ 241 (408)
+++.|++++.||.|++||+..+... ..+. .+...+.+++|+| ++..++++..+. ....
T Consensus 152 ~~~~l~~~~~dg~v~vwd~~~~~~~------------~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~ 219 (814)
T 3mkq_A 152 DPSTFASGCLDRTVKVWSLGQSTPN------------FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS 219 (814)
T ss_dssp EEEEEEEEETTSEEEEEETTCSSCS------------EEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTE
T ss_pred CCCEEEEEeCCCeEEEEECCCCcce------------eEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCc
Confidence 8899999999999999998654322 2223 3347889999999 888888765443 2333
Q ss_pred ceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCC--EEEEecCCceEE
Q psy988 242 TGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGK--YIVSGSENQCIY 319 (408)
Q Consensus 242 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~ 319 (408)
....+..+...|.+++|+|+++++++++.||.|++||+.+++....+..+.. .+.+++|+|+++ +++++ .++.+.
T Consensus 220 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~-~~~~~~ 296 (814)
T 3mkq_A 220 CVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLE--RSWCIATHPTGRKNYIASG-FDNGFT 296 (814)
T ss_dssp EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSS--SEEEEEECTTCGGGEEEEE-ETTEEE
T ss_pred EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCC--cEEEEEEccCCCceEEEEE-eCCCEE
Confidence 4555667889999999999999999999999999999999999888887655 788999999987 35555 466788
Q ss_pred EeeccccCcccccccc-------------------------------CccccceeeeeeccceEEEEecCCchhhhhccC
Q psy988 320 IWKTHHDYAKFSSVRR-------------------------------DRNDFWEGIKAHNAVVTCAVFAPCPELIIAQME 368 (408)
Q Consensus 320 iw~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~ 368 (408)
+|++..........+. ........+..+...+.+++|+|+|+++++...
T Consensus 297 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~ 376 (814)
T 3mkq_A 297 VLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVGD 376 (814)
T ss_dssp EEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEET
T ss_pred EEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEecC
Confidence 8987654322211000 000111223445667899999999998887663
Q ss_pred CC--------------------CCCCcccEEEEEecCCeEEEEeCCCC
Q psy988 369 PD--------------------KSESTGYVLVSADFNGVIRVFLNKTK 396 (408)
Q Consensus 369 ~~--------------------~~s~~~~~l~s~~~dg~v~iw~~~~~ 396 (408)
.. .|++++++|++++.||.|++|+...+
T Consensus 377 ~~~~i~~~~~~~~~~~~~i~~~~~spdg~~la~~~~~g~v~l~~~~~~ 424 (814)
T 3mkq_A 377 GEYVIYTALAWRNKAFGKCQDFVWGPDSNSYALIDETGQIKYYKNFKE 424 (814)
T ss_dssp TEEEEEETTTTEEEEEEECSEEEECTTSSCEEEECTTCCEEEEETTEE
T ss_pred CEEEEEECccccccCCCceEEEEEeCCCCeEEEEeCCCcEEEEECCCC
Confidence 32 67889999999999999999976443
No 57
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.1e-41 Score=297.43 Aligned_cols=287 Identities=15% Similarity=0.231 Sum_probs=232.6
Q ss_pred eEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEE
Q psy988 25 VTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQ 104 (408)
Q Consensus 25 v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 104 (408)
++.|+||+ + ++||+|. |++|+|||..+++......+.+|...|++++|+|+|++|++|+.||.|++||+++++....
T Consensus 108 ~~~l~wS~-~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~ 184 (420)
T 4gga_A 108 LNLVDWSS-G-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN 184 (420)
T ss_dssp CBCEEECT-T-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred ceeEEECC-C-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEE
Confidence 56799997 4 5777765 8999999999998876556778889999999999999999999999999999999876443
Q ss_pred EEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcc-cceeecCccccccceEEEEecCCCEEEEeecCc
Q psy988 105 IHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLN-LSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQ 183 (408)
Q Consensus 105 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 183 (408)
. ..|...+.++.++ +..|++++.|+.+++||..... .+..+.+|... +..+.++|+++++++++.|+
T Consensus 185 ~--------~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~--~~~~~~~~~g~~l~s~~~D~ 252 (420)
T 4gga_A 185 M--------TSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQE--VCGLRWAPDGRHLASGGNDN 252 (420)
T ss_dssp E--------CCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSC--EEEEEECTTSSEEEEEETTS
T ss_pred E--------eCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccc--eeeeeecCCCCeeeeeeccc
Confidence 3 2456788888774 6799999999999999998654 34455665544 77899999999999999999
Q ss_pred eEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCC
Q psy988 184 CIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGED 263 (408)
Q Consensus 184 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 263 (408)
.+++|+...+... ...+.....|...|.+++|+|.+..+++
T Consensus 253 ~v~i~~~~~~~~~--------~~~~~~~~~~~~~V~~~~~~p~~~~~la------------------------------- 293 (420)
T 4gga_A 253 LVNVWPSAPGEGG--------WVPLQTFTQHQGAVKAVAWCPWQSNVLA------------------------------- 293 (420)
T ss_dssp CEEEEESSCCSSC--------SCCSEEECCCSSCEEEEEECTTCTTEEE-------------------------------
T ss_pred cceEEeecccccc--------ceeeeeecccCCceeeeeeCCCcccEEE-------------------------------
Confidence 9999998764321 1223344556667777777766554421
Q ss_pred eEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEec--CCceEEEeeccccCccccccccCccccc
Q psy988 264 KILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS--ENQCIYIWKTHHDYAKFSSVRRDRNDFW 341 (408)
Q Consensus 264 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 341 (408)
.++|+.|++|++||+.++++...+..+. .+.++.|+|+++.+++++ .|+.|+|||+.++ +++
T Consensus 294 -~~~gs~D~~I~iwd~~t~~~~~~~~~~~---~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~------------~~v 357 (420)
T 4gga_A 294 -TGGGTSDRHIRIWNVCSGACLSAVDAHS---QVCSILWSPHYKELISGHGFAQNQLVIWKYPTM------------AKV 357 (420)
T ss_dssp -EEECTTTCEEEEEETTTTEEEEEEECSS---CEEEEEEETTTTEEEEEECTTTCCEEEEETTTC------------CEE
T ss_pred -EEeecCCCEEEEEeCCccccceeecccc---ceeeeeecCCCCeEEEEEecCCCEEEEEECCCC------------cEE
Confidence 2345789999999999999988877643 577899999999988754 7999999999887 678
Q ss_pred eeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCC
Q psy988 342 EGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKP 397 (408)
Q Consensus 342 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 397 (408)
..+.+|.+.|++++|+| ||++|+||+.||+|+|||+....
T Consensus 358 ~~l~gH~~~V~~l~~sp----------------dg~~l~S~s~D~tvriWdv~~~~ 397 (420)
T 4gga_A 358 AELKGHTSRVLSLTMSP----------------DGATVASAAADETLRLWRCFELD 397 (420)
T ss_dssp EEECCCSSCEEEEEECT----------------TSSCEEEEETTTEEEEECCSCSS
T ss_pred EEEcCCCCCEEEEEEcC----------------CCCEEEEEecCCeEEEEECCCCC
Confidence 88999999999999999 99999999999999999997654
No 58
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=7.7e-43 Score=300.37 Aligned_cols=280 Identities=14% Similarity=0.222 Sum_probs=226.7
Q ss_pred CCceEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCC-----ceeeeeecCCceeeEEEE
Q psy988 1 MDKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKK-----VAVWNEVEGQTKLITAAN 74 (408)
Q Consensus 1 ~Dg~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~-----~~~~~~~~~~~~~v~~~~ 74 (408)
.||+|+|||+.+++....+. |...|.+++|+| ++++|++|+.|+.|++|++.+.. ......+.+|.+.|.++.
T Consensus 86 ~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~-~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~ 164 (380)
T 3iz6_a 86 QDGRLIVWNALTSQKTHAIKLHCPWVMECAFAP-NGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQ 164 (380)
T ss_dssp TTSEEEEEETTTTEEEEEEECCCTTCCCCEECT-TSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCB
T ss_pred CCCeEEEEECCCCccceEEecCCCCEEEEEECC-CCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEE
Confidence 38999999999999999888 999999999999 99999999999999999997532 223356889999999999
Q ss_pred EecC-CCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCC-CCCeEEEeeCCCeEEEEEcc-Cccc
Q psy988 75 FCEN-GKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMP-GEDKILVTSNDSRIRLYDLR-DLNL 151 (408)
Q Consensus 75 ~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~-~~~~ 151 (408)
|+|+ +..|++++.|++|++||+.+++....+. .....+|...|.++.|++ +++.|++|+.|+.|++||++ ..+.
T Consensus 165 ~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~---~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~ 241 (380)
T 3iz6_a 165 YVPDQETRLITGSGDQTCVLWDVTTGQRISIFG---SEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRA 241 (380)
T ss_dssp CCSSSSSCEEEECTTSCEEEECTTTCCEEEEEC---CCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCC
T ss_pred EecCCCCEEEEECCCCcEEEEEcCCCcEEEEee---cccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcc
Confidence 9997 4579999999999999999887654332 122245678999999987 78899999999999999998 4566
Q ss_pred ceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceee
Q psy988 152 SCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELII 231 (408)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 231 (408)
...+.+|... +.+++|+|++++|++++.||.|++||++++..... +..+ +.
T Consensus 242 ~~~~~~h~~~--v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~------------~~~~----------~~----- 292 (380)
T 3iz6_a 242 VRTYHGHEGD--INSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQV------------YNRE----------PD----- 292 (380)
T ss_dssp CEEECCCSSC--CCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEE------------ECCC----------CS-----
T ss_pred eEEECCcCCC--eEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEE------------eccc----------cc-----
Confidence 7777777654 78999999999999999999999999976533211 0000 00
Q ss_pred eecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEee--ccceeceeEEEEcCCCCEE
Q psy988 232 AQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKG--YVNVSSQIKASFSHDGKYI 309 (408)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l 309 (408)
....+...+.+++|+|++++|++|+.||.|++||+.+++....+.. ..+...|.+++|+|+|++|
T Consensus 293 -------------~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l 359 (380)
T 3iz6_a 293 -------------RNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSAL 359 (380)
T ss_dssp -------------SSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEE
T ss_pred -------------ccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEE
Confidence 0001223477888899999999999999999999999888877732 1234478999999999999
Q ss_pred EEecCCceEEEeecccc
Q psy988 310 VSGSENQCIYIWKTHHD 326 (408)
Q Consensus 310 ~~~~~dg~i~iw~~~~~ 326 (408)
++|+.||.|++|++...
T Consensus 360 ~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 360 CTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp EEECTTSCEEEEECCSS
T ss_pred EEeeCCCCEEEEecCCC
Confidence 99999999999998764
No 59
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=2.8e-41 Score=297.56 Aligned_cols=297 Identities=17% Similarity=0.294 Sum_probs=248.5
Q ss_pred CCceEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCC
Q psy988 1 MDKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENG 79 (408)
Q Consensus 1 ~Dg~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 79 (408)
.||+|++||+.+++++..+. |.+.|.+++|++ ++|++|+.||+|++||+.+++.. ..+.+|...|.++.|+ +
T Consensus 137 ~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~---~~l~s~~~dg~i~vwd~~~~~~~--~~~~~h~~~v~~~~~~--~ 209 (445)
T 2ovr_B 137 DDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD---NIIISGSTDRTLKVWNAETGECI--HTLYGHTSTVRCMHLH--E 209 (445)
T ss_dssp TTSCEEEEETTTCCEEEECCCCSSCEEEEEEET---TEEEEEETTSCEEEEETTTTEEE--EEECCCSSCEEEEEEE--T
T ss_pred CCCcEEEEECCCCcEEEEEcCCCCCEEEEEecC---CEEEEEeCCCeEEEEECCcCcEE--EEECCCCCcEEEEEec--C
Confidence 38999999999999998887 999999999974 58999999999999999998766 6888999999999995 5
Q ss_pred CEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCcc
Q psy988 80 KFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV 159 (408)
Q Consensus 80 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 159 (408)
+.+++++.||.|++||+.+++...... .|...+.++.+ +++.+++++.||.|++||+++++.+..+..+.
T Consensus 210 ~~l~s~s~dg~i~~wd~~~~~~~~~~~--------~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 279 (445)
T 2ovr_B 210 KRVVSGSRDATLRVWDIETGQCLHVLM--------GHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHT 279 (445)
T ss_dssp TEEEEEETTSEEEEEESSSCCEEEEEE--------CCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCS
T ss_pred CEEEEEeCCCEEEEEECCCCcEEEEEc--------CCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCC
Confidence 789999999999999999877654432 45678999999 68899999999999999999999888888766
Q ss_pred ccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCC
Q psy988 160 NVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKS 239 (408)
Q Consensus 160 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 239 (408)
.. +.++.| +++++++++.||.|++||++++.. ...+..|...+.++.++
T Consensus 280 ~~--v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~------------~~~~~~~~~~v~~~~~~--------------- 328 (445)
T 2ovr_B 280 NR--VYSLQF--DGIHVVSGSLDTSIRVWDVETGNC------------IHTLTGHQSLTSGMELK--------------- 328 (445)
T ss_dssp SC--EEEEEE--CSSEEEEEETTSCEEEEETTTCCE------------EEEECCCCSCEEEEEEE---------------
T ss_pred Cc--eEEEEE--CCCEEEEEeCCCeEEEEECCCCCE------------EEEEcCCcccEEEEEEe---------------
Confidence 54 667777 889999999999999999976432 23344455555554442
Q ss_pred CCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeecc-ceeceeEEEEcCCCCEEEEecCCceE
Q psy988 240 ESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV-NVSSQIKASFSHDGKYIVSGSENQCI 318 (408)
Q Consensus 240 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i 318 (408)
++++++++.||.|++||+++++.+..+..+. +...+.+++|+ +++|++|+.||.|
T Consensus 329 ----------------------~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v 384 (445)
T 2ovr_B 329 ----------------------DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTV 384 (445)
T ss_dssp ----------------------TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEE
T ss_pred ----------------------CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeE
Confidence 4568999999999999999999998887632 34578888885 6899999999999
Q ss_pred EEeeccccCccccccccCccccceee-----eeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCe----EE
Q psy988 319 YIWKTHHDYAKFSSVRRDRNDFWEGI-----KAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGV----IR 389 (408)
Q Consensus 319 ~iw~~~~~~~~~~~~~~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~----v~ 389 (408)
++||+.++ +.+..+ .+|.+.|++++|+| ++.+|++|+.||+ |.
T Consensus 385 ~iwd~~~~------------~~~~~~~~~~~~~~~~~v~~~~~s~----------------~~~~la~~~~dg~~~~~l~ 436 (445)
T 2ovr_B 385 KLWDLKTG------------EFIRNLVTLESGGSGGVVWRIRASN----------------TKLVCAVGSRNGTEETKLL 436 (445)
T ss_dssp EEEETTTC------------CEEEEEEECTTGGGTCEEEEEEECS----------------SEEEEEEECSSSSSCCEEE
T ss_pred EEEECCCC------------ceeeeeeccccCCCCceEEEEEecC----------------CEEEEEEcccCCCCccEEE
Confidence 99999987 344444 46889999999999 9999999999998 99
Q ss_pred EEeCCCCC
Q psy988 390 VFLNKTKP 397 (408)
Q Consensus 390 iw~~~~~~ 397 (408)
+||+....
T Consensus 437 v~df~~~~ 444 (445)
T 2ovr_B 437 VLDFDVDM 444 (445)
T ss_dssp EEECCCCC
T ss_pred EEECCCCC
Confidence 99998643
No 60
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-43 Score=308.47 Aligned_cols=304 Identities=13% Similarity=0.235 Sum_probs=235.6
Q ss_pred eCCceEEEEEcCCCCC-EEEEE----------eCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCC
Q psy988 21 HIDFVTAICFHPRDDR-YFLSG----------SLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDG 89 (408)
Q Consensus 21 h~~~v~~~~~sp~~~~-~l~t~----------~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 89 (408)
+...|.+++|+| +++ +|++| +.|+.|++||+.++..........|...|.+++|+|++++|++++.||
T Consensus 11 ~~~~v~~~~~sp-~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 89 (416)
T 2pm9_A 11 EFSRTATFAWSH-DKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNG 89 (416)
T ss_dssp EEEESCBCCBCS-SSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSS
T ss_pred hhhhcceEeeCC-CCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCC
Confidence 445789999999 765 99999 889999999998875331123346889999999999999999999999
Q ss_pred EEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCC-CCeEEEeeCCCeEEEEEccCcc------cceee-cCcccc
Q psy988 90 RCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPG-EDKILVTSNDSRIRLYDLRDLN------LSCKY-KGYVNV 161 (408)
Q Consensus 90 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~------~~~~~-~~~~~~ 161 (408)
.|++|++.+...... .... ...|...|.+++|+|+ +++|++++.|+.|++||+++++ ....+ ....+.
T Consensus 90 ~v~vw~~~~~~~~~~-~~~~---~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 165 (416)
T 2pm9_A 90 SLELYSTNEANNAIN-SMAR---FSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSV 165 (416)
T ss_dssp CEEEECCSSTTSCCC-EEEE---CCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSS
T ss_pred eEEEeeccccccccc-chhh---ccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCC
Confidence 999999987211100 0111 2346679999999998 8999999999999999999876 32222 111233
Q ss_pred ccceEEEEecC-CCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCC
Q psy988 162 SSQIKASFSHD-GKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSE 240 (408)
Q Consensus 162 ~~~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 240 (408)
..+.+++|+|+ +.+|++++.||.|++||++++..... +..+..
T Consensus 166 ~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~------------~~~~~~------------------------ 209 (416)
T 2pm9_A 166 DEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIH------------LSYTSP------------------------ 209 (416)
T ss_dssp CCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEE------------ECCCCC------------------------
T ss_pred CCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceE------------Eecccc------------------------
Confidence 45889999999 78999999999999999976433211 111100
Q ss_pred CceeeecCCCceeeeeccCCCC-CeEEEecCCC---eEEEEEcCCC-eeeeEEe-eccceeceeEEEEcC-CCCEEEEec
Q psy988 241 STGYVLNATGRKISGIEPMPGE-DKILVTSNDS---RIRLYDLRDL-NLSCKYK-GYVNVSSQIKASFSH-DGKYIVSGS 313 (408)
Q Consensus 241 ~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~---~i~i~d~~~~-~~~~~~~-~~~~~~~v~~~~~s~-~~~~l~~~~ 313 (408)
...+...+.+++|+|++ .++++++.|+ .|++||++++ ++...+. +|.. .+.+++|+| ++++|++++
T Consensus 210 -----~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~~l~s~~ 282 (416)
T 2pm9_A 210 -----NSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQK--GILSLDWCHQDEHLLLSSG 282 (416)
T ss_dssp -----SSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSS--CEEEEEECSSCSSCEEEEE
T ss_pred -----ccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccC--ceeEEEeCCCCCCeEEEEe
Confidence 01224455566666665 4688899998 9999999986 5666666 5544 789999999 999999999
Q ss_pred CCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcc-cEEEEEecCCeEEEEe
Q psy988 314 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTG-YVLVSADFNGVIRVFL 392 (408)
Q Consensus 314 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~s~~~dg~v~iw~ 392 (408)
.||.|++||+.++ +.+..+.+|...|.+++|+| ++ ++|++++.||.|++|+
T Consensus 283 ~dg~v~~wd~~~~------------~~~~~~~~~~~~v~~~~~s~----------------~~~~~l~s~~~d~~i~iw~ 334 (416)
T 2pm9_A 283 RDNTVLLWNPESA------------EQLSQFPARGNWCFKTKFAP----------------EAPDLFACASFDNKIEVQT 334 (416)
T ss_dssp SSSEEEEECSSSC------------CEEEEEECSSSCCCCEEECT----------------TCTTEEEECCSSSEEEEEE
T ss_pred CCCCEEEeeCCCC------------ccceeecCCCCceEEEEECC----------------CCCCEEEEEecCCcEEEEE
Confidence 9999999999886 56778889999999999999 77 8999999999999999
Q ss_pred CCCCCCcc
Q psy988 393 NKTKPKHS 400 (408)
Q Consensus 393 ~~~~~~~~ 400 (408)
+.+.+...
T Consensus 335 ~~~~~~~~ 342 (416)
T 2pm9_A 335 LQNLTNTL 342 (416)
T ss_dssp SCCCCCSS
T ss_pred ccCCCCCc
Confidence 98876543
No 61
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.2e-41 Score=288.99 Aligned_cols=266 Identities=17% Similarity=0.262 Sum_probs=208.4
Q ss_pred CCceEEEEeccCC-------eeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEE
Q psy988 1 MDKTVRLWHISRK-------ECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITA 72 (408)
Q Consensus 1 ~Dg~i~vwd~~~~-------~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~ 72 (408)
.|++|+|||+.+. .+...+. |...|.+++|+| ++.+|++|+.|++|++||+.+++.. ..+.+|...|.+
T Consensus 47 ~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~-~~~~l~s~s~D~~v~lwd~~~~~~~--~~~~~h~~~v~~ 123 (343)
T 2xzm_R 47 RDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQ-ENCFAISSSWDKTLRLWDLRTGTTY--KRFVGHQSEVYS 123 (343)
T ss_dssp TTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECS-STTEEEEEETTSEEEEEETTSSCEE--EEEECCCSCEEE
T ss_pred CCCEEEEEECCcCCcccccccccchhccCCCceEEEEECC-CCCEEEEEcCCCcEEEEECCCCcEE--EEEcCCCCcEEE
Confidence 3899999999753 3455554 999999999999 9999999999999999999998766 688899999999
Q ss_pred EEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCC----------CeEEEeeCCCeEE
Q psy988 73 ANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGE----------DKILVTSNDSRIR 142 (408)
Q Consensus 73 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----------~~l~~~~~dg~i~ 142 (408)
++|+|++++|++++.|+.|++||+..... ........|...|.+++|+|++ .+|++++.|+.|+
T Consensus 124 v~~sp~~~~l~s~~~d~~i~~wd~~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~ 197 (343)
T 2xzm_R 124 VAFSPDNRQILSAGAEREIKLWNILGECK------FSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLK 197 (343)
T ss_dssp EEECSSTTEEEEEETTSCEEEEESSSCEE------EECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEE
T ss_pred EEECCCCCEEEEEcCCCEEEEEeccCCce------eeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEE
Confidence 99999999999999999999999974321 1122233567789999999987 6899999999999
Q ss_pred EEEccCcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEE
Q psy988 143 LYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAV 222 (408)
Q Consensus 143 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 222 (408)
+||. +.+....+..|.. .+.+++|+|++++|++++.||.|++||+...... ... ..
T Consensus 198 iwd~-~~~~~~~~~~h~~--~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~-----------~~~-~~--------- 253 (343)
T 2xzm_R 198 VWNT-NFQIRYTFKAHES--NVNHLSISPNGKYIATGGKDKKLLIWDILNLTYP-----------QRE-FD--------- 253 (343)
T ss_dssp EEET-TTEEEEEEECCSS--CEEEEEECTTSSEEEEEETTCEEEEEESSCCSSC-----------SEE-EE---------
T ss_pred EEcC-CCceeEEEcCccc--cceEEEECCCCCEEEEEcCCCeEEEEECCCCccc-----------cee-ec---------
Confidence 9994 4555566666654 4889999999999999999999999998432100 000 01
Q ss_pred EeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeee--EEeec---------
Q psy988 223 FAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSC--KYKGY--------- 291 (408)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~--~~~~~--------- 291 (408)
+...|.+++|+|++.++++ +.|+.|++||+.+++... .+...
T Consensus 254 --------------------------~~~~v~~v~~sp~~~~la~-~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (343)
T 2xzm_R 254 --------------------------AGSTINQIAFNPKLQWVAV-GTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQK 306 (343)
T ss_dssp --------------------------CSSCEEEEEECSSSCEEEE-EESSCEEEEESSSCCSCSEEECCCCSGGGBTTBC
T ss_pred --------------------------CCCcEEEEEECCCCCEEEE-ECCCCEEEEEeCCCCCCceEEeecCcchhhhhhc
Confidence 1223555666666666655 457789999998876544 33311
Q ss_pred cceeceeEEEEcCCCCEEEEecCCceEEEeecccc
Q psy988 292 VNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHD 326 (408)
Q Consensus 292 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 326 (408)
.+...+.+++|+|+|++|++|+.||.|++|++.++
T Consensus 307 ~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 307 GKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp CSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred CCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 22346889999999999999999999999998764
No 62
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=3.7e-41 Score=282.66 Aligned_cols=266 Identities=18% Similarity=0.300 Sum_probs=221.4
Q ss_pred CCceEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCC
Q psy988 1 MDKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENG 79 (408)
Q Consensus 1 ~Dg~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 79 (408)
.||.|++||+.+++....+. |...|.+++|+| ++++|++++.|+.|++||+.+++.. ..+.+|...|.+++|+|++
T Consensus 43 ~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~ 119 (312)
T 4ery_A 43 ADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCL--KTLKGHSNYVFCCNFNPQS 119 (312)
T ss_dssp TTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEE--EEEECCSSCEEEEEECSSS
T ss_pred CCCeEEEEeCCCcccchhhccCCCceEEEEEcC-CCCEEEEECCCCEEEEEECCCCcEE--EEEcCCCCCEEEEEEcCCC
Confidence 38999999999999988887 999999999999 9999999999999999999998866 6888999999999999999
Q ss_pred CEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCcc
Q psy988 80 KFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV 159 (408)
Q Consensus 80 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 159 (408)
++|++++.||.|++||+++.+....+ ..|..+|.+++|+|++++|++++.||.|++||+++++.+..+....
T Consensus 120 ~~l~s~~~d~~i~iwd~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~ 191 (312)
T 4ery_A 120 NLIVSGSFDESVRIWDVKTGKCLKTL--------PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 191 (312)
T ss_dssp SEEEEEETTSCEEEEETTTCCEEEEE--------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSS
T ss_pred CEEEEEeCCCcEEEEECCCCEEEEEe--------cCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccC
Confidence 99999999999999999987654332 2455789999999999999999999999999999988776654332
Q ss_pred ccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCC
Q psy988 160 NVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKS 239 (408)
Q Consensus 160 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 239 (408)
...+..++|+|++++|++++.||.|++||++++... ..+..|.....
T Consensus 192 -~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~------------~~~~~~~~~~~-------------------- 238 (312)
T 4ery_A 192 -NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL------------KTYTGHKNEKY-------------------- 238 (312)
T ss_dssp -CCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEE------------EEECSSCCSSS--------------------
T ss_pred -CCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEE------------EEEEecCCceE--------------------
Confidence 234678999999999999999999999999764322 11222211100
Q ss_pred CCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEec--CCce
Q psy988 240 ESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS--ENQC 317 (408)
Q Consensus 240 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~ 317 (408)
.+......+++.+|++++.||.|++||+.+++.+..+.+|.. .+.+++|+|++++|++++ .|+.
T Consensus 239 ------------~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~--~v~~~~~~p~~~~l~s~~~~~d~~ 304 (312)
T 4ery_A 239 ------------CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD--VVISTACHPTENIIASAALENDKT 304 (312)
T ss_dssp ------------CCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSS--CEEEEEECSSSSEEEEEECTTTCC
T ss_pred ------------EEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCC--cEEEEeecCcCCceEEEEccCCcc
Confidence 011112235678899999999999999999999999988765 789999999999999986 6999
Q ss_pred EEEeecc
Q psy988 318 IYIWKTH 324 (408)
Q Consensus 318 i~iw~~~ 324 (408)
|++|+.+
T Consensus 305 i~~W~~d 311 (312)
T 4ery_A 305 IKLWKSD 311 (312)
T ss_dssp EEEEECC
T ss_pred EEEecCC
Confidence 9999864
No 63
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.9e-41 Score=283.48 Aligned_cols=276 Identities=15% Similarity=0.247 Sum_probs=201.9
Q ss_pred CCceEEEEeccCC--eeEeEE--E-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCC-----CceeeeeecCCceee
Q psy988 1 MDKTVRLWHISRK--ECLCCF--Q-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDK-----KVAVWNEVEGQTKLI 70 (408)
Q Consensus 1 ~Dg~i~vwd~~~~--~~~~~~--~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~-----~~~~~~~~~~~~~~v 70 (408)
.|++|++||+.++ +.+..+ . |.+.|.+++|+| ++++|++|+.|++|+||++... .......+.+|...|
T Consensus 32 ~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp-~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V 110 (330)
T 2hes_X 32 TDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRP-HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEV 110 (330)
T ss_dssp SSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECT-TSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CE
T ss_pred CCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECC-CCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcE
Confidence 3899999999875 455555 3 999999999999 9999999999999999998542 122346788999999
Q ss_pred EEEEEecCCCEEEEEecCCEEEEEeccCCe-eeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCc
Q psy988 71 TAANFCENGKFAVVGSYDGRCIFYTTDQLK-YHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDL 149 (408)
Q Consensus 71 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 149 (408)
.+++|+|++++|++++.|++|++||+.... ..... . ....|...|.+++|+|++.+|++++.|+.|++||..++
T Consensus 111 ~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~--~---~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~ 185 (330)
T 2hes_X 111 KGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECI--S---VLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDD 185 (330)
T ss_dssp EEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEE--E---EECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETT
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEE--E---EeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence 999999999999999999999999995432 11111 1 12356679999999999999999999999999999876
Q ss_pred --ccceeecCccccccceEEEEecC--CCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeC
Q psy988 150 --NLSCKYKGYVNVSSQIKASFSHD--GKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAP 225 (408)
Q Consensus 150 --~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 225 (408)
+++..+.+|... +.+++|+|+ +.+|++++.|+.|++||+..+.... .......
T Consensus 186 ~~~~~~~~~~h~~~--v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~-----------------~~~~~~~---- 242 (330)
T 2hes_X 186 DWECVAVLNGHEGT--VWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDD-----------------QQEWVCE---- 242 (330)
T ss_dssp EEEEEEEECCCSSC--EEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTS-----------------CEEEEEE----
T ss_pred CeeEEEEccCCCCc--EEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccc-----------------cceeEEe----
Confidence 466677776654 889999998 6789999999999999986431100 0000000
Q ss_pred CcceeeeecCCCCCCCceeeec-CCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCee--eeEE-eeccceeceeEEE
Q psy988 226 CPELIIAQMEPDKSESTGYVLN-ATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNL--SCKY-KGYVNVSSQIKAS 301 (408)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~-~~~~~~~~v~~~~ 301 (408)
..+. .|...|.+++|++++ +|++++.||.|++||..+++. .... .+|. ...+.+++
T Consensus 243 ------------------~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~-~~~v~~v~ 302 (330)
T 2hes_X 243 ------------------AILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHG-VYEINVVK 302 (330)
T ss_dssp ------------------EECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTT-TSCEEEEE
T ss_pred ------------------eecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccc-cceEEEEE
Confidence 0111 255567777777554 788999999999999987743 2222 2232 12688999
Q ss_pred EcC--CCCEEEEecCCceEEEeeccc
Q psy988 302 FSH--DGKYIVSGSENQCIYIWKTHH 325 (408)
Q Consensus 302 ~s~--~~~~l~~~~~dg~i~iw~~~~ 325 (408)
|+| ++++|++|+.||.|++|++..
T Consensus 303 ~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 303 WLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EC-----CCEEEEETTSEEEEEEC--
T ss_pred EecCCCceEEEEecCCCcEEEEEecc
Confidence 999 789999999999999999864
No 64
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=3.6e-41 Score=298.69 Aligned_cols=303 Identities=17% Similarity=0.243 Sum_probs=242.5
Q ss_pred CCceEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEe--c
Q psy988 1 MDKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFC--E 77 (408)
Q Consensus 1 ~Dg~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~--~ 77 (408)
.||+|++||+.+++.+..+. |.+.|.+++|+| ++ +|++|+.||+|++||+.+++.. ..+.+|...|.+++|+ +
T Consensus 140 ~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~-~~-~l~s~s~dg~i~vwd~~~~~~~--~~~~~h~~~v~~l~~~~~~ 215 (464)
T 3v7d_B 140 DDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH-GG-ILVSGSTDRTVRVWDIKKGCCT--HVFEGHNSTVRCLDIVEYK 215 (464)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSSCEEEEEECS-TT-EEEEEETTSCEEEEETTTTEEE--EEECCCSSCEEEEEEEESS
T ss_pred CCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcC-CC-EEEEEeCCCCEEEEECCCCcEE--EEECCCCCccEEEEEecCC
Confidence 38999999999999999987 999999999999 66 8999999999999999988765 6888999999999998 5
Q ss_pred CCCEEEEEecCCEEEEEeccCCeeeEEEEEee---------------ccccccCCCCeEEEeeCCCCCeEEEeeCCCeEE
Q psy988 78 NGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRS---------------TRGKNATGRKISGIEPMPGEDKILVTSNDSRIR 142 (408)
Q Consensus 78 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~---------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 142 (408)
+++++++++.||.|++||+.+........... .....+|...+.++ +++++++++++.||.|+
T Consensus 216 ~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~ 293 (464)
T 3v7d_B 216 NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLI 293 (464)
T ss_dssp SCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEE
T ss_pred CCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEE
Confidence 78999999999999999998765433211100 11123455677766 56789999999999999
Q ss_pred EEEccCcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEE
Q psy988 143 LYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAV 222 (408)
Q Consensus 143 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 222 (408)
+||+++++.+..+.+|... +.+++|+|+++++++++.||.|++||++++. .+..+..|...+.++.
T Consensus 294 vwd~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~------------~~~~~~~h~~~v~~~~ 359 (464)
T 3v7d_B 294 VWDVAQMKCLYILSGHTDR--IYSTIYDHERKRCISASMDTTIRIWDLENGE------------LMYTLQGHTALVGLLR 359 (464)
T ss_dssp EEETTTTEEEEEECCCSSC--EEEEEEETTTTEEEEEETTSCEEEEETTTTE------------EEEEECCCSSCEEEEE
T ss_pred EEECCCCcEEEEecCCCCC--EEEEEEcCCCCEEEEEeCCCcEEEEECCCCc------------EEEEEeCCCCcEEEEE
Confidence 9999999988888876654 8899999999999999999999999997643 2334455555666555
Q ss_pred EeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEE
Q psy988 223 FAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASF 302 (408)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~ 302 (408)
++ +++|++++.||.|++||+.+++...... +. ..+..++|
T Consensus 360 ~~-------------------------------------~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~--~~~~~~~~ 399 (464)
T 3v7d_B 360 LS-------------------------------------DKFLVSAAADGSIRGWDANDYSRKFSYH-HT--NLSAITTF 399 (464)
T ss_dssp EC-------------------------------------SSEEEEEETTSEEEEEETTTCCEEEEEE-CT--TCCCEEEE
T ss_pred Ec-------------------------------------CCEEEEEeCCCcEEEEECCCCceeeeec-CC--CCccEEEE
Confidence 54 3568999999999999999887665553 22 24567899
Q ss_pred cCCCCEEEEecCCceEEEeeccccCccccccccCcccccee-eeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEE
Q psy988 303 SHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEG-IKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVS 381 (408)
Q Consensus 303 s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s 381 (408)
+|++++|++|+ ||.|++||+.++ +.+.. +..|...|.+++|++ ..++++
T Consensus 400 ~~~~~~l~~~~-dg~i~iwd~~~g------------~~~~~~~~~~~~~v~~v~~~~-----------------~~l~~~ 449 (464)
T 3v7d_B 400 YVSDNILVSGS-ENQFNIYNLRSG------------KLVHANILKDADQIWSVNFKG-----------------KTLVAA 449 (464)
T ss_dssp EECSSEEEEEE-TTEEEEEETTTC------------CEEESCTTTTCSEEEEEEEET-----------------TEEEEE
T ss_pred EeCCCEEEEec-CCeEEEEECCCC------------cEEehhhccCCCcEEEEEecC-----------------CEEEEE
Confidence 99999999998 899999999987 34443 556889999999974 567777
Q ss_pred EecCCeEEEEeC
Q psy988 382 ADFNGVIRVFLN 393 (408)
Q Consensus 382 ~~~dg~v~iw~~ 393 (408)
++.||.+.+|-+
T Consensus 450 ~~~~g~~~i~~l 461 (464)
T 3v7d_B 450 VEKDGQSFLEIL 461 (464)
T ss_dssp EEETTEEEEEEE
T ss_pred EEeCCeEEEEEe
Confidence 788887766543
No 65
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2e-41 Score=294.16 Aligned_cols=285 Identities=16% Similarity=0.231 Sum_probs=223.3
Q ss_pred eEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeec-CCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeE
Q psy988 25 VTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVE-GQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHT 103 (408)
Q Consensus 25 v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~ 103 (408)
+.+++|++ ..+++++.|+.|++|++.+++... .+. .|...|.+++|+|++++|++++.||.|++||+.+.+...
T Consensus 96 ~~~~~~s~---~~l~~~~~d~~v~lw~~~~~~~~~--~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 170 (401)
T 4aez_A 96 LNLLDWSN---LNVVAVALERNVYVWNADSGSVSA--LAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLR 170 (401)
T ss_dssp CBCEEECT---TSEEEEEETTEEEEEETTTCCEEE--EEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred EEEEeecC---CCEEEEECCCeEEEeeCCCCcEeE--eeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEE
Confidence 44466654 458888899999999999988763 333 388999999999999999999999999999999876544
Q ss_pred EEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccC-cccceeecCccccccceEEEEecCCCEEEEeecC
Q psy988 104 QIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRD-LNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSEN 182 (408)
Q Consensus 104 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 182 (408)
... .|...|.+++| +++.+++++.||.|++||++. ......+..|.. .+.+++|+|++++|++++.|
T Consensus 171 ~~~--------~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~s~~~d 238 (401)
T 4aez_A 171 TMA--------GHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSS--EVCGLAWRSDGLQLASGGND 238 (401)
T ss_dssp EEC--------CCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSS--CEEEEEECTTSSEEEEEETT
T ss_pred Eec--------CCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCC--CeeEEEEcCCCCEEEEEeCC
Confidence 332 46679999999 467999999999999999984 555666666554 48899999999999999999
Q ss_pred ceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCC
Q psy988 183 QCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGE 262 (408)
Q Consensus 183 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 262 (408)
|.|++||++++. ....+..|...+.+++|+|++..+
T Consensus 239 ~~v~iwd~~~~~------------~~~~~~~~~~~v~~~~~~p~~~~l-------------------------------- 274 (401)
T 4aez_A 239 NVVQIWDARSSI------------PKFTKTNHNAAVKAVAWCPWQSNL-------------------------------- 274 (401)
T ss_dssp SCEEEEETTCSS------------EEEEECCCSSCCCEEEECTTSTTE--------------------------------
T ss_pred CeEEEccCCCCC------------ccEEecCCcceEEEEEECCCCCCE--------------------------------
Confidence 999999997532 222334455555555555544333
Q ss_pred CeEEEec--CCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEE--ecCCceEEEeeccccCccccccccCcc
Q psy988 263 DKILVTS--NDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVS--GSENQCIYIWKTHHDYAKFSSVRRDRN 338 (408)
Q Consensus 263 ~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~--~~~dg~i~iw~~~~~~~~~~~~~~~~~ 338 (408)
+++++ .|+.|++||+.+++.+..+.. ...+.+++|+|++++|++ |+.||.|++|++.++..
T Consensus 275 --l~~~~gs~d~~i~i~d~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~---------- 339 (401)
T 4aez_A 275 --LATGGGTMDKQIHFWNAATGARVNTVDA---GSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGL---------- 339 (401)
T ss_dssp --EEEECCTTTCEEEEEETTTCCEEEEEEC---SSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEE----------
T ss_pred --EEEecCCCCCEEEEEECCCCCEEEEEeC---CCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccc----------
Confidence 45544 799999999999998888764 236889999999999998 66899999999987521
Q ss_pred ccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCCCccc
Q psy988 339 DFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKPKHSS 401 (408)
Q Consensus 339 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~ 401 (408)
.....+.+|...|.+++|+| ++++|++++.||.|++|++.+++....
T Consensus 340 ~~~~~~~~h~~~v~~~~~s~----------------dg~~l~s~~~dg~i~iw~~~~~~~~~~ 386 (401)
T 4aez_A 340 TKQVDIPAHDTRVLYSALSP----------------DGRILSTAASDENLKFWRVYDGDHVKR 386 (401)
T ss_dssp EEEEEEECCSSCCCEEEECT----------------TSSEEEEECTTSEEEEEECCC------
T ss_pred eeEEEecCCCCCEEEEEECC----------------CCCEEEEEeCCCcEEEEECCCCccccc
Confidence 23344678999999999999 999999999999999999998875543
No 66
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.2e-41 Score=292.70 Aligned_cols=309 Identities=10% Similarity=0.112 Sum_probs=239.8
Q ss_pred EEEeccCCeeEeEEE-eCCceEEEEEcCCC---CCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCE
Q psy988 6 RLWHISRKECLCCFQ-HIDFVTAICFHPRD---DRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKF 81 (408)
Q Consensus 6 ~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~---~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 81 (408)
..|+....+.+..+. |.+.|++++|+| + +++|++|+.||.|++||+.+........+.+|...|.+++|+|++++
T Consensus 22 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 100 (368)
T 3mmy_A 22 TTDNHNPMKDIEVTSSPDDSIGCLSFSP-PTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSK 100 (368)
T ss_dssp -CCSSCTTCCEECSSCCSSCEEEEEECC-TTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSE
T ss_pred ccCCCCCcceeEeccCCCCceEEEEEcC-CCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCE
Confidence 345555566666665 999999999999 6 69999999999999999998444443678889999999999999999
Q ss_pred EEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEee--CCCCCeEEEeeCCCeEEEEEccCcccceeecCcc
Q psy988 82 AVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEP--MPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV 159 (408)
Q Consensus 82 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 159 (408)
|++++.||.|++||+++.+..... .|...|.+++| +|++.+|++++.||.|++||+++++.+..+..+.
T Consensus 101 l~s~~~dg~v~iwd~~~~~~~~~~---------~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 171 (368)
T 3mmy_A 101 VFTASCDKTAKMWDLSSNQAIQIA---------QHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE 171 (368)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEE---------ECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS
T ss_pred EEEEcCCCcEEEEEcCCCCceeec---------cccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC
Confidence 999999999999999988754321 35679999999 8999999999999999999999998888877654
Q ss_pred ccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCC
Q psy988 160 NVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKS 239 (408)
Q Consensus 160 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 239 (408)
. +.++.+ .+..+++++.++.+++|+++.......... ..+.....++.+.++...
T Consensus 172 ~---~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~---------- 226 (368)
T 3mmy_A 172 R---CYCADV--IYPMAVVATAERGLIVYQLENQPSEFRRIE----------SPLKHQHRCVAIFKDKQN---------- 226 (368)
T ss_dssp C---EEEEEE--ETTEEEEEEGGGCEEEEECSSSCEEEEECC----------CSCSSCEEEEEEEECTTS----------
T ss_pred C---ceEEEe--cCCeeEEEeCCCcEEEEEeccccchhhhcc----------ccccCCCceEEEcccCCC----------
Confidence 2 334444 456889999999999999976433322111 111222333333322211
Q ss_pred CCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCC---eeeeEEeeccce----------eceeEEEEcCCC
Q psy988 240 ESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDL---NLSCKYKGYVNV----------SSQIKASFSHDG 306 (408)
Q Consensus 240 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~----------~~v~~~~~s~~~ 306 (408)
....+++++.|+.|++||++.. +....+..|... ..+.+++|+|++
T Consensus 227 ---------------------~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 285 (368)
T 3mmy_A 227 ---------------------KPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVH 285 (368)
T ss_dssp ---------------------CEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTT
T ss_pred ---------------------CCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCC
Confidence 0122889999999999999987 456666665431 158999999999
Q ss_pred CEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCC
Q psy988 307 KYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNG 386 (408)
Q Consensus 307 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg 386 (408)
++|++|+.||.|++||+.++ +++..+.+|...|++++|+| +|++|++++.|+
T Consensus 286 ~~l~s~~~dg~i~iwd~~~~------------~~~~~~~~~~~~v~~~~~s~----------------~g~~l~~~s~d~ 337 (368)
T 3mmy_A 286 GTLATVGSDGRFSFWDKDAR------------TKLKTSEQLDQPISACCFNH----------------NGNIFAYASSYD 337 (368)
T ss_dssp CCEEEEETTSCEEEEETTTT------------EEEEECCCCSSCEEEEEECT----------------TSSCEEEEECCC
T ss_pred CEEEEEccCCeEEEEECCCC------------cEEEEecCCCCCceEEEECC----------------CCCeEEEEeccc
Confidence 99999999999999999986 56778889999999999999 999999999998
Q ss_pred eEEEEeCCCCCC
Q psy988 387 VIRVFLNKTKPK 398 (408)
Q Consensus 387 ~v~iw~~~~~~~ 398 (408)
..+.|++...+.
T Consensus 338 ~~~~~~~~~~~~ 349 (368)
T 3mmy_A 338 WSKGHEFYNPQK 349 (368)
T ss_dssp STTCGGGCCTTS
T ss_pred ccccccccCCCc
Confidence 777666554443
No 67
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=3.4e-40 Score=277.86 Aligned_cols=287 Identities=15% Similarity=0.243 Sum_probs=227.2
Q ss_pred eEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEE
Q psy988 25 VTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQ 104 (408)
Q Consensus 25 v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 104 (408)
.++|+||+ ++ +||+| .|++|+|||+.+++......+.+|...|++++|+|++++|++|+.||+|++|++++++....
T Consensus 28 ~~~l~WS~-~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~ 104 (318)
T 4ggc_A 28 LNLVDWSS-GN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN 104 (318)
T ss_dssp CBCEEECT-TS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred ceEEEECC-CC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEE
Confidence 57799998 65 67766 58999999999998875556678899999999999999999999999999999999876554
Q ss_pred EEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCccc-ceeecCccccccceEEEEecCCCEEEEeecCc
Q psy988 105 IHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNL-SCKYKGYVNVSSQIKASFSHDGKYIVSGSENQ 183 (408)
Q Consensus 105 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 183 (408)
.. .|...+.++.+ ++..+++++.++.+++|+...... ...+.+|.. .+..+.+.+++++|++++.||
T Consensus 105 ~~--------~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~s~~~d~ 172 (318)
T 4ggc_A 105 MT--------SHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQ--EVCGLRWAPDGRHLASGGNDN 172 (318)
T ss_dssp EE--------CCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSS--CEEEEEECTTSSEEEEEETTS
T ss_pred ec--------CccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccC--ceEEEEEcCCCCEEEEEecCc
Confidence 33 34456665554 578999999999999999887643 344555544 377889999999999999999
Q ss_pred eEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCC
Q psy988 184 CIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGED 263 (408)
Q Consensus 184 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 263 (408)
.|++||++++... .........+...+.++.+.|++..++
T Consensus 173 ~i~iwd~~~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~~-------------------------------- 212 (318)
T 4ggc_A 173 LVNVWPSAPGEGG--------WVPLQTFTQHQGAVKAVAWCPWQSNVL-------------------------------- 212 (318)
T ss_dssp CEEEEESSCBTTB--------SCCSEEECCCCSCEEEEEECTTSTTEE--------------------------------
T ss_pred ceeEEECCCCccc--------ccceeeecccCCceEEEEecCCCCcEE--------------------------------
Confidence 9999999764321 112233344556667777766655442
Q ss_pred eEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEe--cCCceEEEeeccccCccccccccCccccc
Q psy988 264 KILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSG--SENQCIYIWKTHHDYAKFSSVRRDRNDFW 341 (408)
Q Consensus 264 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 341 (408)
.+++++.++.|++||............ ...+..+.|+|+++.++++ +.|+.|++||+.++ +++
T Consensus 213 ~~~~~~~~~~i~lwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~------------~~~ 277 (318)
T 4ggc_A 213 ATGGGTSDRHIRIWNVCSGACLSAVDA---HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM------------AKV 277 (318)
T ss_dssp EEEECTTTCEEEEEETTTCCEEEEEEC---SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC------------CEE
T ss_pred EEEecCCCCEEEEEecccccccccccc---eeeeeeeeecccccceEEEEEcCCCEEEEEECCCC------------cEE
Confidence 235678899999999998877655443 2367789999999988764 47999999999887 677
Q ss_pred eeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCC
Q psy988 342 EGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKP 397 (408)
Q Consensus 342 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 397 (408)
..+.+|.+.|++++|+| +|++|+||+.||+|+|||+....
T Consensus 278 ~~l~gH~~~V~~l~~sp----------------dg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 278 AELKGHTSRVLSLTMSP----------------DGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp EEECCCSSCEEEEEECT----------------TSSCEEEEETTTEEEEECCSCCC
T ss_pred EEEcCCCCCEEEEEEcC----------------CCCEEEEEecCCeEEEEECCCCC
Confidence 88999999999999999 99999999999999999997653
No 68
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=4.7e-41 Score=285.49 Aligned_cols=291 Identities=13% Similarity=0.141 Sum_probs=233.7
Q ss_pred eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCe
Q psy988 21 HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLK 100 (408)
Q Consensus 21 h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 100 (408)
|.++|.+++|+| +|++++++..++.+.+|........ ....+|...|.+++|+|++++|++++ ||.|++|++.+..
T Consensus 8 ~~~~v~~~~~s~-dg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~ 83 (337)
T 1gxr_A 8 GSKPAYSFHVTA-DGQMQPVPFPPDALIGPGIPRHARQ--INTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPG 83 (337)
T ss_dssp EEEECCEEEECS-SSCEEECCCCTTSSSSTTCCSEEEE--EEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTT
T ss_pred cCCceeEEEECC-CCCEEEeecCCCcEeccccCCcccc--ceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCC
Confidence 778899999999 9999999888887777765443332 34557999999999999999999998 9999999998765
Q ss_pred eeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCccc--ceeecCccccccceEEEEecCCCEEEE
Q psy988 101 YHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNL--SCKYKGYVNVSSQIKASFSHDGKYIVS 178 (408)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~ 178 (408)
......... ...|...+.+++|+|++++|++++.|+.|++||+++++. ...+..+. ..+.+++|+|++++|++
T Consensus 84 ~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~ 158 (337)
T 1gxr_A 84 NKSPVSQLD---CLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSA--PACYALAISPDSKVCFS 158 (337)
T ss_dssp CCSCSEEEE---CSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSS--SCEEEEEECTTSSEEEE
T ss_pred ceeeeeccc---ccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCC--CceEEEEECCCCCEEEE
Confidence 332221111 124567899999999999999999999999999998773 33444443 44788999999999999
Q ss_pred eecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeecc
Q psy988 179 GSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEP 258 (408)
Q Consensus 179 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 258 (408)
++.||.|++||++++... ..+. .+...+.+++|
T Consensus 159 ~~~dg~v~~~d~~~~~~~------------~~~~-----------------------------------~~~~~i~~~~~ 191 (337)
T 1gxr_A 159 CCSDGNIAVWDLHNQTLV------------RQFQ-----------------------------------GHTDGASCIDI 191 (337)
T ss_dssp EETTSCEEEEETTTTEEE------------EEEC-----------------------------------CCSSCEEEEEE
T ss_pred EeCCCcEEEEeCCCCcee------------eeee-----------------------------------cccCceEEEEE
Confidence 999999999998654221 2222 34445666666
Q ss_pred CCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCcc
Q psy988 259 MPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRN 338 (408)
Q Consensus 259 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 338 (408)
+|++++|++++.|+.|++||+++++....+.. ...+.+++|+|++++|++++.|+.|++|++.+.
T Consensus 192 ~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~------------ 256 (337)
T 1gxr_A 192 SNDGTKLWTGGLDNTVRSWDLREGRQLQQHDF---TSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP------------ 256 (337)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTTEEEEEEEC---SSCEEEEEECTTSSEEEEEETTSCEEEEETTSS------------
T ss_pred CCCCCEEEEEecCCcEEEEECCCCceEeeecC---CCceEEEEECCCCCEEEEEcCCCcEEEEECCCC------------
Confidence 66777789999999999999999988777653 336889999999999999999999999999875
Q ss_pred ccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCCCc
Q psy988 339 DFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKPKH 399 (408)
Q Consensus 339 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~ 399 (408)
....+..|...|.+++|+| ++++|++++.||.|++|++.+++..
T Consensus 257 -~~~~~~~~~~~v~~~~~~~----------------~~~~l~~~~~dg~i~~~~~~~~~~~ 300 (337)
T 1gxr_A 257 -DKYQLHLHESCVLSLKFAY----------------CGKWFVSTGKDNLLNAWRTPYGASI 300 (337)
T ss_dssp -CEEEECCCSSCEEEEEECT----------------TSSEEEEEETTSEEEEEETTTCCEE
T ss_pred -CeEEEcCCccceeEEEECC----------------CCCEEEEecCCCcEEEEECCCCeEE
Confidence 2345678999999999999 9999999999999999999988755
No 69
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-40 Score=291.62 Aligned_cols=303 Identities=17% Similarity=0.238 Sum_probs=242.3
Q ss_pred CceEEEEec----cCCe------eEeEEE-----------eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceee
Q psy988 2 DKTVRLWHI----SRKE------CLCCFQ-----------HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60 (408)
Q Consensus 2 Dg~i~vwd~----~~~~------~~~~~~-----------h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~ 60 (408)
||.|++||+ .+++ ....+. |.+.|++++|+| ++++|++++.||.|++|| .+++..
T Consensus 67 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~~-~~~~~~-- 142 (425)
T 1r5m_A 67 NSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSH-DGNSIVTGVENGELRLWN-KTGALL-- 142 (425)
T ss_dssp BTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECT-TSSEEEEEETTSCEEEEE-TTSCEE--
T ss_pred CceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcC-CCCEEEEEeCCCeEEEEe-CCCCee--
Confidence 799999999 8888 455544 467999999999 999999999999999999 444444
Q ss_pred eeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccc-------cccCCCCeEEEeeCCCCCeEE
Q psy988 61 NEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRG-------KNATGRKISGIEPMPGEDKIL 133 (408)
Q Consensus 61 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~l~ 133 (408)
..+..|...|.+++|+|++++|++++.||.|++||+.+.+............ .......+.++.|+|+ ..++
T Consensus 143 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 221 (425)
T 1r5m_A 143 NVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDD-DKFV 221 (425)
T ss_dssp EEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEET-TEEE
T ss_pred eeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCC-CEEE
Confidence 6788999999999999999999999999999999999887655443221110 0011122888999986 4688
Q ss_pred EeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCcccccccc
Q psy988 134 VTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKA 213 (408)
Q Consensus 134 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 213 (408)
+++.+|.|++||+++++....+..+... +.+++|+|++++|++++.||.|++||++++ .....+..
T Consensus 222 ~~~~~g~i~~~d~~~~~~~~~~~~~~~~--i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~------------~~~~~~~~ 287 (425)
T 1r5m_A 222 IPGPKGAIFVYQITEKTPTGKLIGHHGP--ISVLEFNDTNKLLLSASDDGTLRIWHGGNG------------NSQNCFYG 287 (425)
T ss_dssp EECGGGCEEEEETTCSSCSEEECCCSSC--EEEEEEETTTTEEEEEETTSCEEEECSSSB------------SCSEEECC
T ss_pred EEcCCCeEEEEEcCCCceeeeeccCCCc--eEEEEECCCCCEEEEEcCCCEEEEEECCCC------------ccceEecC
Confidence 9999999999999999888888766544 789999999999999999999999998754 33345667
Q ss_pred ccceEEEEEEeCCcceeeeecCCC-------CCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCe---
Q psy988 214 HNAVVTCAVFAPCPELIIAQMEPD-------KSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLN--- 283 (408)
Q Consensus 214 ~~~~v~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--- 283 (408)
|...+.++.|+|++ .+++...+. ........+..+...+.+++|+|++++|++++.||.|++||+++++
T Consensus 288 ~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~ 366 (425)
T 1r5m_A 288 HSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKS 366 (425)
T ss_dssp CSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--
T ss_pred CCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccce
Confidence 88999999999999 665553332 2334445566788899999999999999999999999999999887
Q ss_pred -----------------eeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeecc
Q psy988 284 -----------------LSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTH 324 (408)
Q Consensus 284 -----------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 324 (408)
.+..+..+.....+.+++|+|++++|++++.||.|++|+++
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 367 RSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp ------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred eeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 77777776433378999999999999999999999999985
No 70
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.4e-40 Score=285.91 Aligned_cols=280 Identities=14% Similarity=0.147 Sum_probs=224.5
Q ss_pred CceEEEEeccCCeeEeEEE------eCCceEEEEEcCCC----CCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeE
Q psy988 2 DKTVRLWHISRKECLCCFQ------HIDFVTAICFHPRD----DRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLIT 71 (408)
Q Consensus 2 Dg~i~vwd~~~~~~~~~~~------h~~~v~~~~~sp~~----~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~ 71 (408)
|+.|++||+.+++.+..+. |...|.+++|+| + +++|++|+.||.|++||+.+++.. ..+.+|...|.
T Consensus 43 ~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~l~~~~~dg~i~v~d~~~~~~~--~~~~~~~~~i~ 119 (366)
T 3k26_A 43 SNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTY-DSNTSHPLLAVAGSRGIIRIINPITMQCI--KHYVGHGNAIN 119 (366)
T ss_dssp TTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEE-CTTTCCEEEEEEETTCEEEEECTTTCCEE--EEEESCCSCEE
T ss_pred CCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEecc-CCCCCCCEEEEecCCCEEEEEEchhceEe--eeecCCCCcEE
Confidence 6789999999888777665 557899999999 7 679999999999999999988766 67889999999
Q ss_pred EEEEec-CCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcc
Q psy988 72 AANFCE-NGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLN 150 (408)
Q Consensus 72 ~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 150 (408)
+++|+| ++++|++++.||.|++||+++.+..... .....|...|.+++|+|++++|++++.||.|++||+++++
T Consensus 120 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 194 (366)
T 3k26_A 120 ELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIF-----GGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKR 194 (366)
T ss_dssp EEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEE-----CSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHH
T ss_pred EEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEe-----cccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCc
Confidence 999999 9999999999999999999987654332 1223566799999999999999999999999999999876
Q ss_pred cceeecC--------------------------ccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCC
Q psy988 151 LSCKYKG--------------------------YVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDR 204 (408)
Q Consensus 151 ~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 204 (408)
....+.. ..+...+.+++|+ +++|++++.|+.|++||+.+.....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~------- 265 (366)
T 3k26_A 195 MMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDI------- 265 (366)
T ss_dssp HHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCG-------
T ss_pred cccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccc-------
Confidence 6544332 0023447788888 7799999999999999997643211
Q ss_pred CccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCC--CCeEEEecCCCeEEEEEcCCC
Q psy988 205 NDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPG--EDKILVTSNDSRIRLYDLRDL 282 (408)
Q Consensus 205 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~ 282 (408)
..+..+...+.. ...+..+...|.+++|+|+ +++|++++.||.|++||+.++
T Consensus 266 ----~~~~~~~~~~~~----------------------~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~ 319 (366)
T 3k26_A 266 ----DKIKPSESNVTI----------------------LGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVE 319 (366)
T ss_dssp ----GGCCTTCCCEEE----------------------EEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSS
T ss_pred ----cccccCCcchhe----------------------eccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCC
Confidence 111112111111 1223466778899999999 999999999999999999987
Q ss_pred eee----eEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeecc
Q psy988 283 NLS----CKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTH 324 (408)
Q Consensus 283 ~~~----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 324 (408)
+.. ..+..|.+...|.+++|+|++++|++++.||.|++||+.
T Consensus 320 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 320 DPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp SGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 643 366776545689999999999999999999999999985
No 71
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.8e-40 Score=275.84 Aligned_cols=257 Identities=13% Similarity=0.242 Sum_probs=196.6
Q ss_pred EeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEec--CCCEEEEEecCCEEEEEecc
Q psy988 20 QHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCE--NGKFAVVGSYDGRCIFYTTD 97 (408)
Q Consensus 20 ~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iw~~~ 97 (408)
+|.+.|++++|+| ++++||+|+.|++|+|||+.+........+.+|...|.+++|++ ++++|++++.|++|++||++
T Consensus 7 ~h~~~V~~~~~s~-~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~ 85 (297)
T 2pm7_B 7 AHNEMIHDAVMDY-YGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEE 85 (297)
T ss_dssp SCSSCEEEEEECT-TSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBS
T ss_pred CCcCceEEEEECC-CCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcC
Confidence 4999999999999 99999999999999999997654334478999999999999986 38999999999999999998
Q ss_pred CCeeeEEEEEeeccccccCCCCeEEEeeCCC--CCeEEEeeCCCeEEEEEccCccc--ceeecCccccccceEEEEecC-
Q psy988 98 QLKYHTQIHVRSTRGKNATGRKISGIEPMPG--EDKILVTSNDSRIRLYDLRDLNL--SCKYKGYVNVSSQIKASFSHD- 172 (408)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~- 172 (408)
+++..... ....|...|.+++|+|+ +.+|++++.|+.|++||++++.. ...+..|. ..+.+++|+|+
T Consensus 86 ~~~~~~~~------~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~--~~v~~~~~~p~~ 157 (297)
T 2pm7_B 86 NGRWSQIA------VHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHA--IGVNSASWAPAT 157 (297)
T ss_dssp SSCBCCCE------EECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCS--SCEEEEEECCCC
T ss_pred CCceEEEE------EeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeeccc--CccceEeecCCc
Confidence 76421111 12346678999999997 78999999999999999987642 23344444 34888999996
Q ss_pred ------------CCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCC
Q psy988 173 ------------GKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSE 240 (408)
Q Consensus 173 ------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 240 (408)
+++|++|+.|+.|++||++++.... .....+.+|...|.+++|+|++.
T Consensus 158 ~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~--------~~~~~l~~H~~~V~~v~~sp~~~------------ 217 (297)
T 2pm7_B 158 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY--------VLESTLEGHSDWVRDVAWSPTVL------------ 217 (297)
T ss_dssp ------------CCEEEEEETTSCEEEEEEETTTTEE--------EEEEEECCCSSCEEEEEECCCCS------------
T ss_pred ccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceE--------EEEEEecCCCCceEEEEECCCCC------------
Confidence 5799999999999999986532110 01223445555555555555420
Q ss_pred CceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCee--e-eEEeeccceeceeEEEEcCCCCEEEEecCCce
Q psy988 241 STGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNL--S-CKYKGYVNVSSQIKASFSHDGKYIVSGSENQC 317 (408)
Q Consensus 241 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 317 (408)
.+.+|++++.|++|++||+++... . ..+..+.+...+.+++|+|+|++||+++.||.
T Consensus 218 --------------------~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~ 277 (297)
T 2pm7_B 218 --------------------LRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNK 277 (297)
T ss_dssp --------------------SSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSC
T ss_pred --------------------CceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCc
Confidence 035689999999999999987431 1 22211223457889999999999999999999
Q ss_pred EEEeeccc
Q psy988 318 IYIWKTHH 325 (408)
Q Consensus 318 i~iw~~~~ 325 (408)
|++|+...
T Consensus 278 v~lw~~~~ 285 (297)
T 2pm7_B 278 VTLWKENL 285 (297)
T ss_dssp EEEEEECT
T ss_pred EEEEEECC
Confidence 99999864
No 72
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.1e-40 Score=294.33 Aligned_cols=323 Identities=12% Similarity=0.151 Sum_probs=229.4
Q ss_pred EEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCc---------eeeeeecCCc------------eeeEEEEEec
Q psy988 19 FQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKV---------AVWNEVEGQT------------KLITAANFCE 77 (408)
Q Consensus 19 ~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~---------~~~~~~~~~~------------~~v~~~~~~~ 77 (408)
+.|.+.|++++|+| ++++||+|+.||.|+||++.+++. .....+.+|. ..|.+++|+|
T Consensus 25 ~~~~~~V~~v~~s~-~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~ 103 (447)
T 3dw8_B 25 VAEADIISTVEFNH-SGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLP 103 (447)
T ss_dssp CCGGGSEEEEEECS-SSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECC
T ss_pred ccccCcEEEEEECC-CCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcC
Confidence 34789999999999 999999999999999999987652 1236788898 8899999999
Q ss_pred CC--CEEEEEecCCEEEEEeccCCeeeEEE-------------------------------EEe-eccccccCCCCeEEE
Q psy988 78 NG--KFAVVGSYDGRCIFYTTDQLKYHTQI-------------------------------HVR-STRGKNATGRKISGI 123 (408)
Q Consensus 78 ~~--~~l~~~~~dg~i~iw~~~~~~~~~~~-------------------------------~~~-~~~~~~~~~~~v~~~ 123 (408)
++ .+|++++.|+.|++|++.+....... ... .......|...|.++
T Consensus 104 ~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 183 (447)
T 3dw8_B 104 QKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSI 183 (447)
T ss_dssp CCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEE
T ss_pred CCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEE
Confidence 98 79999999999999999764432100 000 001124577899999
Q ss_pred eeCCCCCeEEEeeCCCeEEEEEccC-ccccee-------ecCccccccceEEEEecCC-CEEEEeecCceEEEeeeccce
Q psy988 124 EPMPGEDKILVTSNDSRIRLYDLRD-LNLSCK-------YKGYVNVSSQIKASFSHDG-KYIVSGSENQCIYIWKTHHDY 194 (408)
Q Consensus 124 ~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~-------~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~ 194 (408)
+|+|++++|+++ .|+.|++||+++ ++.... +..| ...+.+++|+|++ ++|++++.||.|++||++++.
T Consensus 184 ~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~ 260 (447)
T 3dw8_B 184 SINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEEL--TEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASA 260 (447)
T ss_dssp EECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGC--CCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCS
T ss_pred EEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeeccccccccc--CcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCc
Confidence 999999999998 799999999984 333332 2333 3458899999998 999999999999999997643
Q ss_pred eeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeE
Q psy988 195 AKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRI 274 (408)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i 274 (408)
... .....+..|... .....+..+...|.+++|+|++++|++++. +.|
T Consensus 261 ~~~--------~~~~~~~~~~~~-----------------------~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v 308 (447)
T 3dw8_B 261 LCD--------RHSKLFEEPEDP-----------------------SNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSV 308 (447)
T ss_dssp SSC--------TTCEEECCC----------------------------CCHHHHHTTCEEEEEECTTSSEEEEEES-SEE
T ss_pred ccc--------ceeeEeccCCCc-----------------------cccccccccCceEEEEEECCCCCEEEEeeC-CeE
Confidence 110 001122222210 000111233446777788888888899888 999
Q ss_pred EEEEcCC-CeeeeEEeeccceec-------------eeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCc---
Q psy988 275 RLYDLRD-LNLSCKYKGYVNVSS-------------QIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDR--- 337 (408)
Q Consensus 275 ~i~d~~~-~~~~~~~~~~~~~~~-------------v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~--- 337 (408)
++||+++ ++++..+..|..... +..++|+|++++|++|+.||.|++||+.++...........
T Consensus 309 ~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~ 388 (447)
T 3dw8_B 309 KVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKP 388 (447)
T ss_dssp EEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCT
T ss_pred EEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeeccccccc
Confidence 9999997 888888887753211 33489999999999999999999999987643211000000
Q ss_pred -----------------cccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCC
Q psy988 338 -----------------NDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNK 394 (408)
Q Consensus 338 -----------------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~ 394 (408)
.........+...|.+++|+| ++++||+++.++ +++|.-+
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p----------------~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 389 RTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHP----------------KENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp TCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECS----------------SSSEEEEECSSC-EEEEECC
T ss_pred ccccCCccccccCCcccccccccccccCCceeEEEECC----------------CCCEEEEEecce-eeeeccc
Confidence 000000113456789999999 999999998775 8888643
No 73
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=2.2e-40 Score=281.91 Aligned_cols=283 Identities=14% Similarity=0.145 Sum_probs=231.7
Q ss_pred EeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCc-eeeeeecCCceeeEEEEEecCCC-EEEEEecCCEEEEEec-
Q psy988 20 QHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKV-AVWNEVEGQTKLITAANFCENGK-FAVVGSYDGRCIFYTT- 96 (408)
Q Consensus 20 ~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~- 96 (408)
.|.+.|++++|+| ++++|++++.||.|++|++.++.. .....+..|...|.+++|+|+++ +|++++.||.|++||+
T Consensus 9 ~h~~~v~~~~~s~-~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~ 87 (342)
T 1yfq_A 9 APKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLI 87 (342)
T ss_dssp CCSSCEEEEEEEG-GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSS
T ss_pred CCCCcEEEEEEcC-CCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEec
Confidence 3999999999999 999999999999999999988761 11245568999999999999999 9999999999999999
Q ss_pred cCCeeeEEEEEeecccccc--CCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccC---------cccceeecCccccccce
Q psy988 97 DQLKYHTQIHVRSTRGKNA--TGRKISGIEPMPGEDKILVTSNDSRIRLYDLRD---------LNLSCKYKGYVNVSSQI 165 (408)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~---------~~~~~~~~~~~~~~~~~ 165 (408)
.+.+. .. ... |...|.+++|+| ++.+++++.|+.|++||+++ ++++..+. ....+.
T Consensus 88 ~~~~~------~~---~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~---~~~~v~ 154 (342)
T 1yfq_A 88 GSPSF------QA---LTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK---VKNKIF 154 (342)
T ss_dssp SSSSE------EE---CBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS---SCCCEE
T ss_pred cCCce------Ee---ccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe---eCCceE
Confidence 77653 11 123 667999999999 99999999999999999987 66666555 234588
Q ss_pred EEEEecCCCEEEEeecCceEEEeeecc-ceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCcee
Q psy988 166 KASFSHDGKYIVSGSENQCIYIWKTHH-DYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGY 244 (408)
Q Consensus 166 ~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (408)
+++|+|++ +++++.|+.|++||++. ..... ...
T Consensus 155 ~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~----------~~~---------------------------------- 188 (342)
T 1yfq_A 155 TMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNG----------TIE---------------------------------- 188 (342)
T ss_dssp EEEECSSE--EEEEESTTEEEEEESSCCTTCCC----------EEE----------------------------------
T ss_pred EEEecCCc--EEEEeCCCeEEEEECCccccccc----------eee----------------------------------
Confidence 89999887 99999999999999865 21110 001
Q ss_pred eecCCCceeeeeccCC-CCCeEEEecCCCeEEEEEcCCC------eeeeEEeeccc-------eeceeEEEEcCCCCEEE
Q psy988 245 VLNATGRKISGIEPMP-GEDKILVTSNDSRIRLYDLRDL------NLSCKYKGYVN-------VSSQIKASFSHDGKYIV 310 (408)
Q Consensus 245 ~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~------~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~ 310 (408)
...+...+.+++|+| +++++++++.||.|++|+++.. +....+..+.. ...+.+++|+|++++|+
T Consensus 189 -~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 267 (342)
T 1yfq_A 189 -ESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLY 267 (342)
T ss_dssp -ECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEE
T ss_pred -ecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEE
Confidence 113344566666677 7777899999999999999887 77777777643 34789999999999999
Q ss_pred EecCCceEEEeeccccCccccccccCccccceeeeee-ccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCe-E
Q psy988 311 SGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAH-NAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGV-I 388 (408)
Q Consensus 311 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~-v 388 (408)
+++.||.|++||+.++ +.+..+.+| ...|.+++ | ++++|++++.||. .
T Consensus 268 ~~~~dg~i~vwd~~~~------------~~~~~~~~~h~~~v~~~~--~----------------~~~~l~s~s~Dg~~~ 317 (342)
T 1yfq_A 268 TAGSDGIISCWNLQTR------------KKIKNFAKFNEDSVVKIA--C----------------SDNILCLATSDDTFK 317 (342)
T ss_dssp EEETTSCEEEEETTTT------------EEEEECCCCSSSEEEEEE--E----------------CSSEEEEEEECTHHH
T ss_pred EecCCceEEEEcCccH------------hHhhhhhcccCCCceEec--C----------------CCCeEEEEecCCccc
Confidence 9999999999999886 567778888 99999999 8 8999999999999 6
Q ss_pred EEEeC
Q psy988 389 RVFLN 393 (408)
Q Consensus 389 ~iw~~ 393 (408)
+.|..
T Consensus 318 ~~~~~ 322 (342)
T 1yfq_A 318 TNAAI 322 (342)
T ss_dssp HCSSS
T ss_pred ccccc
Confidence 66664
No 74
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=3.8e-40 Score=284.71 Aligned_cols=279 Identities=16% Similarity=0.219 Sum_probs=219.6
Q ss_pred CceEEEEeccCCeeEeEEE---eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecC
Q psy988 2 DKTVRLWHISRKECLCCFQ---HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCEN 78 (408)
Q Consensus 2 Dg~i~vwd~~~~~~~~~~~---h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 78 (408)
||.|+|||+.+++....+. |.+.|.+++|+|.++++|++++.|+.|++||+.+...........|...|.+++|+|+
T Consensus 95 dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 174 (383)
T 3ei3_B 95 GGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVS 174 (383)
T ss_dssp TSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETT
T ss_pred CCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECCC
Confidence 7999999999888887764 9999999999995678999999999999999997554433333455688999999999
Q ss_pred CCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCC-eEEEeeCCCeEEEEEccC----cccce
Q psy988 79 GKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGED-KILVTSNDSRIRLYDLRD----LNLSC 153 (408)
Q Consensus 79 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~----~~~~~ 153 (408)
+++|++++.||.|++||++. +....+ ..|...|.+++|+|+++ .+++++.|+.|++||+++ +....
T Consensus 175 ~~~l~~~~~d~~i~i~d~~~-~~~~~~--------~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 245 (383)
T 3ei3_B 175 RQMLATGDSTGRLLLLGLDG-HEIFKE--------KLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIA 245 (383)
T ss_dssp TTEEEEEETTSEEEEEETTS-CEEEEE--------ECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEE
T ss_pred CCEEEEECCCCCEEEEECCC-CEEEEe--------ccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEE
Confidence 99999999999999999953 322222 24567999999999999 899999999999999998 44444
Q ss_pred eecCccccccceEEEEec-CCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeee
Q psy988 154 KYKGYVNVSSQIKASFSH-DGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIA 232 (408)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 232 (408)
.+ .+ ...+.+++|+| ++++|++++.|+.|++||+++........... .....+...+. +.|+|++..
T Consensus 246 ~~-~~--~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-----~~~~~~~~~~~-~~~~p~~~~--- 313 (383)
T 3ei3_B 246 EM-PH--EKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHP-----HRQFQHLTPIK-ATWHPMYDL--- 313 (383)
T ss_dssp EE-EC--SSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECC-----BCCCTTSCCCC-CEECSSSSE---
T ss_pred Ee-cC--CCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccc-----ccccccccceE-EeccCCCCc---
Confidence 44 33 34588999999 99999999999999999997653321111000 01112233333 356665544
Q ss_pred ecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEe
Q psy988 233 QMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSG 312 (408)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 312 (408)
..++++|++++ +++.|+.|++||+.+++.+..+.++.+...+..++|+|++++|++|
T Consensus 314 ---------------------~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~ 370 (383)
T 3ei3_B 314 ---------------------IVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASG 370 (383)
T ss_dssp ---------------------EEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEE
T ss_pred ---------------------eEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEe
Confidence 35778899988 8899999999999999999999886555567778999999999999
Q ss_pred cCCceEEEeeccc
Q psy988 313 SENQCIYIWKTHH 325 (408)
Q Consensus 313 ~~dg~i~iw~~~~ 325 (408)
+ ||.|++||+++
T Consensus 371 s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 371 M-GFNILIWNRED 382 (383)
T ss_dssp E-TTEEEEEECC-
T ss_pred c-CCcEEEEecCC
Confidence 7 99999999864
No 75
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=3.8e-40 Score=273.87 Aligned_cols=270 Identities=12% Similarity=0.099 Sum_probs=204.9
Q ss_pred eeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCC--CCeEEEeeCC
Q psy988 61 NEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPG--EDKILVTSND 138 (408)
Q Consensus 61 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d 138 (408)
..+.+|...|.+++|+|+|++|++|+.|++|++||+.+..... .....+|..+|.+++|+|+ +++|++++.|
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~------~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D 76 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKL------IDTLTGHEGPVWRVDWAHPKFGTILASCSYD 76 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCC------CEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEE------EEEEccccCCeEEEEecCCCcCCEEEEEcCC
Confidence 4578899999999999999999999999999999997532111 1112357789999999864 8899999999
Q ss_pred CeEEEEEccCcc--cceeecCccccccceEEEEecC--CCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccc
Q psy988 139 SRIRLYDLRDLN--LSCKYKGYVNVSSQIKASFSHD--GKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAH 214 (408)
Q Consensus 139 g~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (408)
+.|++||+++++ .+..+..|. ..+.+++|+|+ +.+|++++.|+.|++||++.... .....+..|
T Consensus 77 ~~v~iWd~~~~~~~~~~~~~~h~--~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~----------~~~~~~~~h 144 (297)
T 2pm7_B 77 GKVMIWKEENGRWSQIAVHAVHS--ASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGT----------TSPIIIDAH 144 (297)
T ss_dssp TEEEEEEBSSSCBCCCEEECCCS--SCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSC----------BCCEEEECC
T ss_pred CEEEEEEcCCCceEEEEEeecCC--CceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCc----------eeeeeeecc
Confidence 999999998874 344455544 34889999997 88999999999999999975321 012345678
Q ss_pred cceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCe----eeeEEee
Q psy988 215 NAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLN----LSCKYKG 290 (408)
Q Consensus 215 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~----~~~~~~~ 290 (408)
...|.+++|+|++..... .-...+++++|++++.|++|++||+++++ ....+.+
T Consensus 145 ~~~v~~~~~~p~~~~~~~----------------------~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~ 202 (297)
T 2pm7_B 145 AIGVNSASWAPATIEEDG----------------------EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG 202 (297)
T ss_dssp SSCEEEEEECCCC----------------------------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECC
T ss_pred cCccceEeecCCcccccc----------------------cCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecC
Confidence 888889999886431100 00112356789999999999999998765 5556777
Q ss_pred ccceeceeEEEEcCCC---CEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhcc
Q psy988 291 YVNVSSQIKASFSHDG---KYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQM 367 (408)
Q Consensus 291 ~~~~~~v~~~~~s~~~---~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~ 367 (408)
|.. .|.+++|+|++ ++||+++.|++|++||+........ ........|...|.+++|+|
T Consensus 203 H~~--~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~-------~~~~~~~~~~~~v~~~~~s~--------- 264 (297)
T 2pm7_B 203 HSD--WVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWK-------KTLLKEEKFPDVLWRASWSL--------- 264 (297)
T ss_dssp CSS--CEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCE-------EEESSSSCCSSCEEEEEECS---------
T ss_pred CCC--ceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccc-------eeeeecccCCCcEEEEEECC---------
Confidence 655 89999999985 8999999999999999976421100 01111246788999999999
Q ss_pred CCCCCCCcccEEEEEecCCeEEEEeCCC
Q psy988 368 EPDKSESTGYVLVSADFNGVIRVFLNKT 395 (408)
Q Consensus 368 ~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 395 (408)
+|++||+++.||.|++|+...
T Consensus 265 -------~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 265 -------SGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp -------SSCCEEEEETTSCEEEEEECT
T ss_pred -------CCCEEEEEcCCCcEEEEEECC
Confidence 999999999999999999863
No 76
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=7.8e-40 Score=303.65 Aligned_cols=265 Identities=21% Similarity=0.364 Sum_probs=213.3
Q ss_pred CCceEEEEeccCC-----eeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEE
Q psy988 1 MDKTVRLWHISRK-----ECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAAN 74 (408)
Q Consensus 1 ~Dg~i~vwd~~~~-----~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~ 74 (408)
.||+|+|||+.+. .....+. |...|.+++|+| ++++|++|+.||+|+|||+.++... ..+.+|...|.+++
T Consensus 403 ~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~-~g~~l~sgs~Dg~v~vwd~~~~~~~--~~~~~h~~~v~~~~ 479 (694)
T 3dm0_A 403 RDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSS-DGQFALSGSWDGELRLWDLAAGVST--RRFVGHTKDVLSVA 479 (694)
T ss_dssp TTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEE--EEEECCSSCEEEEE
T ss_pred CCCcEEEEEccCCCcccccccceecCCCCcEEEEEECC-CCCEEEEEeCCCcEEEEECCCCcce--eEEeCCCCCEEEEE
Confidence 3899999999753 3444554 999999999999 9999999999999999999988765 68889999999999
Q ss_pred EecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCC--CeEEEeeCCCeEEEEEccCcccc
Q psy988 75 FCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGE--DKILVTSNDSRIRLYDLRDLNLS 152 (408)
Q Consensus 75 ~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~ 152 (408)
|+|++++|++++.|++|++||...... .........|...|.+++|+|++ ..+++++.|+.|++||+++++..
T Consensus 480 ~s~~~~~l~s~s~D~~i~iwd~~~~~~-----~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~ 554 (694)
T 3dm0_A 480 FSLDNRQIVSASRDRTIKLWNTLGECK-----YTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLR 554 (694)
T ss_dssp ECTTSSCEEEEETTSCEEEECTTSCEE-----EEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEE
T ss_pred EeCCCCEEEEEeCCCEEEEEECCCCcc-----eeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEE
Confidence 999999999999999999999865432 11222334677889999999986 57999999999999999999888
Q ss_pred eeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeee
Q psy988 153 CKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIA 232 (408)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 232 (408)
..+.+|... +.+++|+|++++|++++.||.|++||++++.... .+. +..
T Consensus 555 ~~~~~h~~~--v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~------------~~~-~~~---------------- 603 (694)
T 3dm0_A 555 STLAGHTGY--VSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLY------------SLE-ANS---------------- 603 (694)
T ss_dssp EEECCCSSC--EEEEEECTTSSEEEEEETTSBCEEEETTTTEEEE------------CCB-CSS----------------
T ss_pred EEEcCCCCC--EEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEE------------Eec-CCC----------------
Confidence 888887654 8899999999999999999999999997653221 111 122
Q ss_pred ecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccc-----------------ee
Q psy988 233 QMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVN-----------------VS 295 (408)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-----------------~~ 295 (408)
.+.+++|+|++.++++++ ++.|++||+++++.+..+..+.. ..
T Consensus 604 -------------------~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 663 (694)
T 3dm0_A 604 -------------------VIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVI 663 (694)
T ss_dssp -------------------CEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCC
T ss_pred -------------------cEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeE
Confidence 344555555665566554 56699999999988877653211 12
Q ss_pred ceeEEEEcCCCCEEEEecCCceEEEeecc
Q psy988 296 SQIKASFSHDGKYIVSGSENQCIYIWKTH 324 (408)
Q Consensus 296 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 324 (408)
.+++++|+|+|++|++|+.||.|++|++.
T Consensus 664 ~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 664 YCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 36789999999999999999999999985
No 77
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.8e-39 Score=283.46 Aligned_cols=262 Identities=13% Similarity=0.303 Sum_probs=211.3
Q ss_pred CCceEEEEeccCCeeEeEEE---eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEec
Q psy988 1 MDKTVRLWHISRKECLCCFQ---HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCE 77 (408)
Q Consensus 1 ~Dg~i~vwd~~~~~~~~~~~---h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~ 77 (408)
+|++|+|||+.+++++..+. |.+.|++|+|+| ++++||+|+.||+|+|||+.+++.. ..+.+|...+.++++
T Consensus 123 ld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fsp-dg~~lasgs~Dg~v~iWd~~~~~~~--~~~~~h~~~v~~~s~-- 197 (420)
T 4gga_A 123 LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIK-EGNYLAVGTSSAEVQLWDVQQQKRL--RNMTSHSARVGSLSW-- 197 (420)
T ss_dssp ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEE--EEECCCSSCEEEEEE--
T ss_pred eCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECC-CCCEEEEEECCCeEEEEEcCCCcEE--EEEeCCCCceEEEee--
Confidence 48999999999999988775 778899999999 9999999999999999999998776 688999999998877
Q ss_pred CCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccc----e
Q psy988 78 NGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLS----C 153 (408)
Q Consensus 78 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----~ 153 (408)
++.+|++|+.|+.+++||.......... ...|...+..+.++|++.++++++.|+.+++|+..+++.. .
T Consensus 198 ~~~~l~sgs~d~~i~~~d~~~~~~~~~~-------~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~ 270 (420)
T 4gga_A 198 NSYILSSGSRSGHIHHHDVRVAEHHVAT-------LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQ 270 (420)
T ss_dssp ETTEEEEEETTSEEEEEETTSSSCEEEE-------EECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSE
T ss_pred CCCEEEEEeCCCceeEeeecccceeeEE-------ecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeee
Confidence 5679999999999999998875543221 1245678999999999999999999999999999876532 2
Q ss_pred eecCccccccceEEEEecCCCE-EEE--eecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCccee
Q psy988 154 KYKGYVNVSSQIKASFSHDGKY-IVS--GSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELI 230 (408)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~-l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 230 (408)
....+. ..+.+++|+|.+.. +++ |+.|+.|++||+.++..... +. ....+.++.|+|++
T Consensus 271 ~~~~~~--~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~------------~~-~~~~v~~~~~~~~~--- 332 (420)
T 4gga_A 271 TFTQHQ--GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA------------VD-AHSQVCSILWSPHY--- 332 (420)
T ss_dssp EECCCS--SCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEE------------EE-CSSCEEEEEEETTT---
T ss_pred eecccC--CceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcccccee------------ec-cccceeeeeecCCC---
Confidence 333333 44788999997654 444 45799999999976543221 11 22344555555554
Q ss_pred eeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEE--ecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCE
Q psy988 231 IAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILV--TSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKY 308 (408)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 308 (408)
+.+++ |+.|+.|+|||+.+++++..+.+|.. .|.+++|+|||++
T Consensus 333 --------------------------------~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~--~V~~l~~spdg~~ 378 (420)
T 4gga_A 333 --------------------------------KELISGHGFAQNQLVIWKYPTMAKVAELKGHTS--RVLSLTMSPDGAT 378 (420)
T ss_dssp --------------------------------TEEEEEECTTTCCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSC
T ss_pred --------------------------------CeEEEEEecCCCEEEEEECCCCcEEEEEcCCCC--CEEEEEEcCCCCE
Confidence 44444 45799999999999999999999866 8999999999999
Q ss_pred EEEecCCceEEEeecccc
Q psy988 309 IVSGSENQCIYIWKTHHD 326 (408)
Q Consensus 309 l~~~~~dg~i~iw~~~~~ 326 (408)
|++|+.|++|+|||+...
T Consensus 379 l~S~s~D~tvriWdv~~~ 396 (420)
T 4gga_A 379 VASAAADETLRLWRCFEL 396 (420)
T ss_dssp EEEEETTTEEEEECCSCS
T ss_pred EEEEecCCeEEEEECCCC
Confidence 999999999999999764
No 78
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.9e-39 Score=280.57 Aligned_cols=264 Identities=11% Similarity=0.221 Sum_probs=213.4
Q ss_pred CceEEEEeccCCeeEeEEE--eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCC
Q psy988 2 DKTVRLWHISRKECLCCFQ--HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENG 79 (408)
Q Consensus 2 Dg~i~vwd~~~~~~~~~~~--h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 79 (408)
||.|++||+.+++....+. |...|.+++|+| ++++|++|+.||.|++||+.+++.. ..+.+|...|.+++| ++
T Consensus 112 d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~v~~~~~--~~ 186 (401)
T 4aez_A 112 ERNVYVWNADSGSVSALAETDESTYVASVKWSH-DGSFLSVGLGNGLVDIYDVESQTKL--RTMAGHQARVGCLSW--NR 186 (401)
T ss_dssp TTEEEEEETTTCCEEEEEECCTTCCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEE--EEECCCSSCEEEEEE--ET
T ss_pred CCeEEEeeCCCCcEeEeeecCCCCCEEEEEECC-CCCEEEEECCCCeEEEEECcCCeEE--EEecCCCCceEEEEE--CC
Confidence 8999999999999988876 789999999999 9999999999999999999988766 678899999999999 56
Q ss_pred CEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCcc
Q psy988 80 KFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV 159 (408)
Q Consensus 80 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 159 (408)
++|++++.||.|++||++........ ...|...|.+++|+|++++|++++.|+.|++||+++++....+..+.
T Consensus 187 ~~l~~~~~dg~i~i~d~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~ 259 (401)
T 4aez_A 187 HVLSSGSRSGAIHHHDVRIANHQIGT-------LQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHN 259 (401)
T ss_dssp TEEEEEETTSEEEEEETTSSSCEEEE-------EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCS
T ss_pred CEEEEEcCCCCEEEEecccCcceeeE-------EcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCc
Confidence 79999999999999999854322111 12456799999999999999999999999999999988888777665
Q ss_pred ccccceEEEEecCCCE-EEEee--cCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCC
Q psy988 160 NVSSQIKASFSHDGKY-IVSGS--ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEP 236 (408)
Q Consensus 160 ~~~~~~~~~~~~~~~~-l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 236 (408)
.. +.+++|+|++.. +++++ .|+.|++||+.++... ..+ .+
T Consensus 260 ~~--v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~------------~~~-~~---------------------- 302 (401)
T 4aez_A 260 AA--VKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARV------------NTV-DA---------------------- 302 (401)
T ss_dssp SC--CCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEE------------EEE-EC----------------------
T ss_pred ce--EEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEE------------EEE-eC----------------------
Confidence 44 789999997754 55544 6999999999754221 111 12
Q ss_pred CCCCCceeeecCCCceeeeeccCCCCCeEEE--ecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecC
Q psy988 237 DKSESTGYVLNATGRKISGIEPMPGEDKILV--TSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSE 314 (408)
Q Consensus 237 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 314 (408)
...+.+++|+|+++++++ |+.||.|++||+.+++.........+...+.+++|+|++++|++++.
T Consensus 303 -------------~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~ 369 (401)
T 4aez_A 303 -------------GSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAAS 369 (401)
T ss_dssp -------------SSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECT
T ss_pred -------------CCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeC
Confidence 234555566666666777 56899999999999776665443334458899999999999999999
Q ss_pred CceEEEeeccccC
Q psy988 315 NQCIYIWKTHHDY 327 (408)
Q Consensus 315 dg~i~iw~~~~~~ 327 (408)
||.|++|++.++.
T Consensus 370 dg~i~iw~~~~~~ 382 (401)
T 4aez_A 370 DENLKFWRVYDGD 382 (401)
T ss_dssp TSEEEEEECCC--
T ss_pred CCcEEEEECCCCc
Confidence 9999999998863
No 79
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.5e-39 Score=285.43 Aligned_cols=287 Identities=19% Similarity=0.276 Sum_probs=224.9
Q ss_pred eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCe
Q psy988 21 HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLK 100 (408)
Q Consensus 21 h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 100 (408)
|...|.++.| ++++|++|+.||.|++||+.+++.. ..+.+|...|.+++| ++++|++|+.||.|++||+.+++
T Consensus 132 ~~~~v~~~~~---d~~~l~~g~~dg~i~iwd~~~~~~~--~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~ 204 (435)
T 1p22_A 132 TSKGVYCLQY---DDQKIVSGLRDNTIKIWDKNTLECK--RILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGE 204 (435)
T ss_dssp SCCCEEEEEC---CSSEEEEEESSSCEEEEESSSCCEE--EEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCC
T ss_pred CCCcEEEEEE---CCCEEEEEeCCCeEEEEeCCCCeEE--EEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCc
Confidence 6677998887 6789999999999999999988876 688899999999999 78999999999999999999887
Q ss_pred eeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccc---eeecCccccccceEEEEecCCCEEE
Q psy988 101 YHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLS---CKYKGYVNVSSQIKASFSHDGKYIV 177 (408)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~ 177 (408)
..... ..|...|.+++|+ ++.+++++.||.|++||+++++.. ..+.+|.. .+.++++ ++++++
T Consensus 205 ~~~~~--------~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~--~v~~~~~--~~~~l~ 270 (435)
T 1p22_A 205 MLNTL--------IHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA--AVNVVDF--DDKYIV 270 (435)
T ss_dssp EEEEE--------CCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSS--CEEEEEE--ETTEEE
T ss_pred EEEEE--------cCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCC--cEEEEEe--CCCEEE
Confidence 54433 2456789999997 459999999999999999987765 44555543 3667777 788999
Q ss_pred EeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeec
Q psy988 178 SGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIE 257 (408)
Q Consensus 178 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 257 (408)
+++.||.|++||++++. .+..+..|...+.++.++
T Consensus 271 s~~~dg~i~vwd~~~~~------------~~~~~~~~~~~v~~~~~~--------------------------------- 305 (435)
T 1p22_A 271 SASGDRTIKVWNTSTCE------------FVRTLNGHKRGIACLQYR--------------------------------- 305 (435)
T ss_dssp EEETTSEEEEEETTTCC------------EEEEEECCSSCEEEEEEE---------------------------------
T ss_pred EEeCCCeEEEEECCcCc------------EEEEEcCCCCcEEEEEeC---------------------------------
Confidence 99999999999997642 233445555556555552
Q ss_pred cCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCc
Q psy988 258 PMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDR 337 (408)
Q Consensus 258 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 337 (408)
++++++|+.||.|++||+++++++..+.+|.. .+.+++| ++++|++|+.||.|++||+.++..... ...
T Consensus 306 ----~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~--~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~---~~~ 374 (435)
T 1p22_A 306 ----DRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRA---PAG 374 (435)
T ss_dssp ----TTEEEEEETTSCEEEEETTTCCEEEEECCCSS--CEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTS---CTT
T ss_pred ----CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcC--cEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccc---ccc
Confidence 45689999999999999999999999988765 7888888 789999999999999999987532111 011
Q ss_pred cccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCCCcccc
Q psy988 338 NDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKPKHSSL 402 (408)
Q Consensus 338 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 402 (408)
...+..+.+|.+.|.+++|. +++|++++.||.|++||+.+.+.....
T Consensus 375 ~~~~~~~~~h~~~v~~l~~~------------------~~~l~s~s~Dg~i~iwd~~~~~~~~~~ 421 (435)
T 1p22_A 375 TLCLRTLVEHSGRVFRLQFD------------------EFQIVSSSHDDTILIWDFLNDPAAQAE 421 (435)
T ss_dssp TTEEEEECCCSSCCCCEEEC------------------SSCEEECCSSSEEEEEC----------
T ss_pred chheeeccCCCCCeEEEEeC------------------CCEEEEEeCCCEEEEEECCCCCCcccC
Confidence 12567788999999999993 468999999999999999887654443
No 80
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=7.3e-39 Score=283.87 Aligned_cols=288 Identities=18% Similarity=0.265 Sum_probs=228.0
Q ss_pred eEeEEE-eCCce-EEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEE
Q psy988 15 CLCCFQ-HIDFV-TAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCI 92 (408)
Q Consensus 15 ~~~~~~-h~~~v-~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 92 (408)
....+. |.+.| .++.+ ++++|++|+.||+|++||+.+++.. ..+.+|...|.+++|+|++ +|++++.||+|+
T Consensus 113 ~~~~l~~h~~~v~~~~~~---~~~~l~sgs~dg~i~vwd~~~~~~~--~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~ 186 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQF---EDNYVITGADDKMIRVYDSINKKFL--LQLSGHDGGVWALKYAHGG-ILVSGSTDRTVR 186 (464)
T ss_dssp EEEEEECCSSSCEEEEEE---ETTEEEEEETTSCEEEEETTTTEEE--EEECCCSSCEEEEEECSTT-EEEEEETTSCEE
T ss_pred ceEEEcCCCCCcEEEEEE---CCCEEEEEcCCCcEEEEECCCCcEE--EEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEE
Confidence 334454 88875 55555 4579999999999999999998766 6888999999999999988 899999999999
Q ss_pred EEeccCCeeeEEEEEeeccccccCCCCeEEEeeC--CCCCeEEEeeCCCeEEEEEccCcccce-----------------
Q psy988 93 FYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPM--PGEDKILVTSNDSRIRLYDLRDLNLSC----------------- 153 (408)
Q Consensus 93 iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~----------------- 153 (408)
+||+++++....+ ..|...|.+++|+ ++++++++++.||.|++||++++....
T Consensus 187 vwd~~~~~~~~~~--------~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (464)
T 3v7d_B 187 VWDIKKGCCTHVF--------EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEE 258 (464)
T ss_dssp EEETTTTEEEEEE--------CCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGG
T ss_pred EEECCCCcEEEEE--------CCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCC
Confidence 9999988754433 2466799999998 577899999999999999998765432
Q ss_pred ------eecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCc
Q psy988 154 ------KYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCP 227 (408)
Q Consensus 154 ------~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 227 (408)
.+.++.. .+ .+++++++++++++.||.|++||++++.. +..+.+|..
T Consensus 259 ~~~~~~~~~~~~~--~v--~~~~~~~~~l~~~~~d~~i~vwd~~~~~~------------~~~~~~~~~----------- 311 (464)
T 3v7d_B 259 NPYFVGVLRGHMA--SV--RTVSGHGNIVVSGSYDNTLIVWDVAQMKC------------LYILSGHTD----------- 311 (464)
T ss_dssp CTTEEEEECCCSS--CE--EEEEEETTEEEEEETTSCEEEEETTTTEE------------EEEECCCSS-----------
T ss_pred CeEEEEEccCccc--eE--EEEcCCCCEEEEEeCCCeEEEEECCCCcE------------EEEecCCCC-----------
Confidence 2233322 23 34578899999999999999999965422 222333444
Q ss_pred ceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCC
Q psy988 228 ELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGK 307 (408)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 307 (408)
.|.+++|+|+++++++++.|+.|++||+++++++..+.+|.. .+.+++|+ ++
T Consensus 312 ------------------------~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~--~v~~~~~~--~~ 363 (464)
T 3v7d_B 312 ------------------------RIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTA--LVGLLRLS--DK 363 (464)
T ss_dssp ------------------------CEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSS--CEEEEEEC--SS
T ss_pred ------------------------CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCC--cEEEEEEc--CC
Confidence 455555555667789999999999999999999999988765 78888887 58
Q ss_pred EEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCe
Q psy988 308 YIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGV 387 (408)
Q Consensus 308 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~ 387 (408)
+|++++.||.|++||+.+.. ... ...|...+..++|+| ++++|++++ ||.
T Consensus 364 ~l~s~s~dg~v~vwd~~~~~------------~~~-~~~~~~~~~~~~~~~----------------~~~~l~~~~-dg~ 413 (464)
T 3v7d_B 364 FLVSAAADGSIRGWDANDYS------------RKF-SYHHTNLSAITTFYV----------------SDNILVSGS-ENQ 413 (464)
T ss_dssp EEEEEETTSEEEEEETTTCC------------EEE-EEECTTCCCEEEEEE----------------CSSEEEEEE-TTE
T ss_pred EEEEEeCCCcEEEEECCCCc------------eee-eecCCCCccEEEEEe----------------CCCEEEEec-CCe
Confidence 99999999999999998752 111 223667788899999 899999998 999
Q ss_pred EEEEeCCCCCCccc
Q psy988 388 IRVFLNKTKPKHSS 401 (408)
Q Consensus 388 v~iw~~~~~~~~~~ 401 (408)
|++||+.+++....
T Consensus 414 i~iwd~~~g~~~~~ 427 (464)
T 3v7d_B 414 FNIYNLRSGKLVHA 427 (464)
T ss_dssp EEEEETTTCCEEES
T ss_pred EEEEECCCCcEEeh
Confidence 99999999886654
No 81
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-39 Score=281.60 Aligned_cols=263 Identities=12% Similarity=0.238 Sum_probs=204.8
Q ss_pred eeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecC--CCEEEEEecCCE
Q psy988 14 ECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCEN--GKFAVVGSYDGR 90 (408)
Q Consensus 14 ~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~ 90 (408)
+++..+. |.+.|++++|+| ++++|++|+.||.|++|++..........+.+|...|.+++|+++ +++|++++.||.
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~ 80 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDY-YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 80 (379)
T ss_dssp ---CCEEECCCCEEEEEECS-SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred CccEEecCCcccEEEEEEcC-CCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence 4455565 999999999999 999999999999999999986555555788999999999999977 999999999999
Q ss_pred EEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCC--CCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEE
Q psy988 91 CIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPG--EDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKAS 168 (408)
Q Consensus 91 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 168 (408)
|++||+.+.+...... ...|...|.+++|+|+ +..|++++.|+.|++||+++...........+...+.+++
T Consensus 81 v~iwd~~~~~~~~~~~------~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~ 154 (379)
T 3jrp_A 81 VLIWKEENGRWSQIAV------HAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSAS 154 (379)
T ss_dssp EEEEEEETTEEEEEEE------ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEE
T ss_pred EEEEEcCCCceeEeee------ecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEE
Confidence 9999999876322222 1245679999999999 8999999999999999999875443333223345588999
Q ss_pred Eec-------------CCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecC
Q psy988 169 FSH-------------DGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQME 235 (408)
Q Consensus 169 ~~~-------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 235 (408)
|+| ++.+|++++.||.|++||++.+.... .....+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--------~~~~~~~----------------------- 203 (379)
T 3jrp_A 155 WAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY--------VLESTLE----------------------- 203 (379)
T ss_dssp ECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEE--------EEEEEEC-----------------------
T ss_pred EcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcce--------eeEEEEe-----------------------
Confidence 999 69999999999999999996532111 0112223
Q ss_pred CCCCCCceeeecCCCceeeeeccCCC---CCeEEEecCCCeEEEEEcCCCee---eeEEeeccceeceeEEEEcCCCCEE
Q psy988 236 PDKSESTGYVLNATGRKISGIEPMPG---EDKILVTSNDSRIRLYDLRDLNL---SCKYKGYVNVSSQIKASFSHDGKYI 309 (408)
Q Consensus 236 ~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~d~~i~i~d~~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l 309 (408)
.|...|.+++|+|+ +++|++++.||.|++||+++++. ...+....+...+.+++|+|++++|
T Consensus 204 ------------~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 271 (379)
T 3jrp_A 204 ------------GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVL 271 (379)
T ss_dssp ------------CCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCE
T ss_pred ------------cccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEE
Confidence 34455556666666 67789999999999999998642 2222232344578999999999999
Q ss_pred EEecCCceEEEeecccc
Q psy988 310 VSGSENQCIYIWKTHHD 326 (408)
Q Consensus 310 ~~~~~dg~i~iw~~~~~ 326 (408)
++++.||.|++|++...
T Consensus 272 ~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 272 ALSGGDNKVTLWKENLE 288 (379)
T ss_dssp EEEESSSSEEEEEEEET
T ss_pred EEecCCCcEEEEeCCCC
Confidence 99999999999999853
No 82
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2.3e-39 Score=281.44 Aligned_cols=289 Identities=10% Similarity=0.143 Sum_probs=222.5
Q ss_pred CCceEEEEeccCCe------eEeEEE-eCCceEEEEEcCCC----C---CEEEEEeCCCcEEEEecCCCCc---eeeeee
Q psy988 1 MDKTVRLWHISRKE------CLCCFQ-HIDFVTAICFHPRD----D---RYFLSGSLDGKLRLWNIPDKKV---AVWNEV 63 (408)
Q Consensus 1 ~Dg~i~vwd~~~~~------~~~~~~-h~~~v~~~~~sp~~----~---~~l~t~~~dg~i~iw~~~~~~~---~~~~~~ 63 (408)
.||+|+|||+.+++ .+..+. |...|.+++|+| + + ++|++++.||.|++|++.+++. .....+
T Consensus 34 ~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~ 112 (397)
T 1sq9_A 34 GDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQ-AIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKL 112 (397)
T ss_dssp TTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEE-EEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEE
T ss_pred CCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEec-ccccCCccccEEEEEcCCCCEEEEEccCCcccccccceee
Confidence 38999999999988 555555 999999999999 8 8 9999999999999999998775 002577
Q ss_pred cCC-----ceeeEEEEEe----cCCCE-EEEEecCCEEEEEeccC------CeeeE-----EEEEeeccccccCCCCeEE
Q psy988 64 EGQ-----TKLITAANFC----ENGKF-AVVGSYDGRCIFYTTDQ------LKYHT-----QIHVRSTRGKNATGRKISG 122 (408)
Q Consensus 64 ~~~-----~~~v~~~~~~----~~~~~-l~~~~~dg~i~iw~~~~------~~~~~-----~~~~~~~~~~~~~~~~v~~ 122 (408)
..| ...|.+++|+ |++++ |++++.||.|++||+.+ .+... .+.. .......|...+.+
T Consensus 113 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~ 191 (397)
T 1sq9_A 113 DLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQG-TVESPMTPSQFATS 191 (397)
T ss_dssp CCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEE-EECCSSSSCCCCCE
T ss_pred cccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeee-eeccccCCCCCceE
Confidence 778 5899999999 99999 99999999999999987 44333 2211 01111345678999
Q ss_pred EeeCCCCCeEEEeeCCCeEEEEEccCcccceeecC---cc-ccccceEEEEecCCCEEEEeecC---ceEEEeeecccee
Q psy988 123 IEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKG---YV-NVSSQIKASFSHDGKYIVSGSEN---QCIYIWKTHHDYA 195 (408)
Q Consensus 123 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~ 195 (408)
++|+|++ .+++++.||.|++||+++++.+..+.. |. ....+.+++|+|++++|++++.| |.|++||++++..
T Consensus 192 ~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~ 270 (397)
T 1sq9_A 192 VDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGER 270 (397)
T ss_dssp EEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCE
T ss_pred EEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcc
Confidence 9999999 999999999999999999988888776 40 03448899999999999999999 9999999975432
Q ss_pred eeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEE
Q psy988 196 KFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIR 275 (408)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~ 275 (408)
.. .+.... .+.. .......+...|.+++|+|++++|++++.|+.|+
T Consensus 271 ~~------------~~~~~~--------~~~~--------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 316 (397)
T 1sq9_A 271 IG------------SLSVPT--------HSSQ--------------ASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLR 316 (397)
T ss_dssp EE------------EECBC------------------------------CCBSBSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred cc------------eeccCc--------cccc--------------ccccccccCCcEEEEEECCCCCEEEEEeCCCeEE
Confidence 21 111100 0000 0000112556777788888888899999999999
Q ss_pred EEEcCCCeeeeEEe------ec-------------cceeceeEEEEcCCC----------CEEEEecCCceEEEeecccc
Q psy988 276 LYDLRDLNLSCKYK------GY-------------VNVSSQIKASFSHDG----------KYIVSGSENQCIYIWKTHHD 326 (408)
Q Consensus 276 i~d~~~~~~~~~~~------~~-------------~~~~~v~~~~~s~~~----------~~l~~~~~dg~i~iw~~~~~ 326 (408)
+||+++++.+..+. .| .+...|.+++|+|++ ++|++++.||.|++|++.++
T Consensus 317 iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 317 FWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp EEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred EEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 99999999999988 54 004489999999998 79999999999999999865
No 83
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=9.4e-40 Score=273.87 Aligned_cols=255 Identities=15% Similarity=0.199 Sum_probs=194.9
Q ss_pred EeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEec--CCCEEEEEecCCEEEEEecc
Q psy988 20 QHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCE--NGKFAVVGSYDGRCIFYTTD 97 (408)
Q Consensus 20 ~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iw~~~ 97 (408)
+|.+.|++++|+| ++++||+|+.|++|+|||+.++.......+.+|...|.+++|++ ++++|++++.|++|++||++
T Consensus 11 ~H~~~V~~v~~s~-~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~ 89 (316)
T 3bg1_A 11 SHEDMIHDAQMDY-YGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREE 89 (316)
T ss_dssp ---CCEEEEEECG-GGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCS
T ss_pred cccCeEEEeeEcC-CCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECC
Confidence 4999999999999 99999999999999999998876544578899999999999985 48999999999999999998
Q ss_pred CCeeeEEEEEeeccccccCCCCeEEEeeCCC--CCeEEEeeCCCeEEEEEccCccc---ceeecCccccccceEEEEecC
Q psy988 98 QLKYHTQIHVRSTRGKNATGRKISGIEPMPG--EDKILVTSNDSRIRLYDLRDLNL---SCKYKGYVNVSSQIKASFSHD 172 (408)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 172 (408)
++....... ...|...|.+++|+|+ +.+|++++.|+.|++||++.+.. ...+..|. ..+.+++|+|+
T Consensus 90 ~~~~~~~~~------~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~--~~v~~~~~~~~ 161 (316)
T 3bg1_A 90 NGTWEKSHE------HAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHT--IGCNAVSWAPA 161 (316)
T ss_dssp SSCCCEEEE------ECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSS--SCBCCCEECCC
T ss_pred CCcceEEEE------ccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeecccc--CCcceEEEccc
Confidence 764222111 2346679999999998 78999999999999999987532 23334443 34677899987
Q ss_pred -----------------CCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecC
Q psy988 173 -----------------GKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQME 235 (408)
Q Consensus 173 -----------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 235 (408)
+++|++++.|+.|++||++.... ......+.+|...|.+++|+|++..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~---------~~~~~~l~~h~~~V~~v~~sp~~~~------ 226 (316)
T 3bg1_A 162 VVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQ---------WKEEQKLEAHSDWVRDVAWAPSIGL------ 226 (316)
T ss_dssp CCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSC---------EEEEECCBCCSSCEEEEECCCCSSC------
T ss_pred cCCccccccccccCccccceEEEecCCCeEEEEEeCCCCc---------cceeeecccCCCceEEEEecCCCCC------
Confidence 47899999999999999854210 0122334556556666665554311
Q ss_pred CCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCC---e-eeeEEeeccceeceeEEEEcCCCCEEEE
Q psy988 236 PDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDL---N-LSCKYKGYVNVSSQIKASFSHDGKYIVS 311 (408)
Q Consensus 236 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~---~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 311 (408)
++++|++++.|++|++||+.+. + ....+..|. ..+.+++|+|++++||+
T Consensus 227 -------------------------~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~--~~v~~v~~sp~g~~las 279 (316)
T 3bg1_A 227 -------------------------PTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFN--DVVWHVSWSITANILAV 279 (316)
T ss_dssp -------------------------SCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECS--SCEEEEEECTTTCCEEE
T ss_pred -------------------------CCceEEEEcCCCeEEEEEccCccccchhhhhhhcCC--CcEEEEEEcCCCCEEEE
Confidence 1267899999999999998763 1 223344443 47899999999999999
Q ss_pred ecCCceEEEeeccc
Q psy988 312 GSENQCIYIWKTHH 325 (408)
Q Consensus 312 ~~~dg~i~iw~~~~ 325 (408)
++.|+.|++|+...
T Consensus 280 ~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 280 SGGDNKVTLWKESV 293 (316)
T ss_dssp EESSSCEEEEEECT
T ss_pred EcCCCeEEEEEECC
Confidence 99999999999763
No 84
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.6e-39 Score=272.49 Aligned_cols=274 Identities=12% Similarity=0.055 Sum_probs=202.4
Q ss_pred eeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCC--CCCeEEEeeCC
Q psy988 61 NEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMP--GEDKILVTSND 138 (408)
Q Consensus 61 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d 138 (408)
..+.+|...|.+++|+|+|++|++|+.|++|++||+.++...... . ..+|...|.+++|+| ++++|++++.|
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~---~---l~gH~~~V~~v~~~~~~~~~~l~s~s~D 80 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIA---D---LRGHEGPVWQVAWAHPMYGNILASCSYD 80 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEE---E---EECCSSCEEEEEECCGGGSSCEEEEETT
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEE---E---EcCCCccEEEEEeCCCCCCCEEEEEECC
Confidence 356789999999999999999999999999999999876432111 1 235678999999986 48899999999
Q ss_pred CeEEEEEccCcc--cceeecCccccccceEEEEecC--CCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccc
Q psy988 139 SRIRLYDLRDLN--LSCKYKGYVNVSSQIKASFSHD--GKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAH 214 (408)
Q Consensus 139 g~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (408)
+.|++||+++++ ....+.+|.. .+.+++|+|+ +.+|++++.|+.|++||++.+... .....+..|
T Consensus 81 ~~v~iWd~~~~~~~~~~~~~~h~~--~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~---------~~~~~~~~h 149 (316)
T 3bg1_A 81 RKVIIWREENGTWEKSHEHAGHDS--SVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQW---------EVKKINNAH 149 (316)
T ss_dssp SCEEEECCSSSCCCEEEEECCCSS--CCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCE---------EECCBTTSS
T ss_pred CEEEEEECCCCcceEEEEccCCCC--ceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCc---------ceeeeeccc
Confidence 999999998874 3444555544 4889999998 789999999999999999753110 112345677
Q ss_pred cceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCC---eeeeEEeec
Q psy988 215 NAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDL---NLSCKYKGY 291 (408)
Q Consensus 215 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~ 291 (408)
...+.++.|+|+...-.. . .+. .-...+++++|++++.|++|++||++.. ++...+.+|
T Consensus 150 ~~~v~~~~~~~~~~~~~~-------------~-~~~----~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h 211 (316)
T 3bg1_A 150 TIGCNAVSWAPAVVPGSL-------------I-DHP----SGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAH 211 (316)
T ss_dssp SSCBCCCEECCCCCC--------------------C----CSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCC
T ss_pred cCCcceEEEccccCCccc-------------c-ccc----cccCccccceEEEecCCCeEEEEEeCCCCccceeeecccC
Confidence 788888888887421000 0 000 0011224678999999999999999755 355556666
Q ss_pred cceeceeEEEEcCCC----CEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhcc
Q psy988 292 VNVSSQIKASFSHDG----KYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQM 367 (408)
Q Consensus 292 ~~~~~v~~~~~s~~~----~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~ 367 (408)
.. .|.+++|+|++ ++|++|+.|++|++|++.+.... ......+..|...|.+++|+|
T Consensus 212 ~~--~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~--------~~~~~~~~~~~~~v~~v~~sp--------- 272 (316)
T 3bg1_A 212 SD--WVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSN--------TWSPKLLHKFNDVVWHVSWSI--------- 272 (316)
T ss_dssp SS--CEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCC--------CCBCCEEEECSSCEEEEEECT---------
T ss_pred CC--ceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCcccc--------chhhhhhhcCCCcEEEEEEcC---------
Confidence 54 89999999987 89999999999999998763110 011234567899999999999
Q ss_pred CCCCCCCcccEEEEEecCCeEEEEeCCC
Q psy988 368 EPDKSESTGYVLVSADFNGVIRVFLNKT 395 (408)
Q Consensus 368 ~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 395 (408)
++++||+++.||.|++|+...
T Consensus 273 -------~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 273 -------TANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp -------TTCCEEEEESSSCEEEEEECT
T ss_pred -------CCCEEEEEcCCCeEEEEEECC
Confidence 999999999999999999863
No 85
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=3.6e-39 Score=275.27 Aligned_cols=309 Identities=15% Similarity=0.178 Sum_probs=211.9
Q ss_pred EeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCc--eeeeeecCCceeeEEEEEec--CCCEEEEEecCCEEEEEe
Q psy988 20 QHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKV--AVWNEVEGQTKLITAANFCE--NGKFAVVGSYDGRCIFYT 95 (408)
Q Consensus 20 ~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~--~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iw~ 95 (408)
+|.+.|++++|+| ++++|++|+.||.|++||+.++.. .....+.+|...|.+++|+| ++++|++++.||.|++||
T Consensus 9 gH~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd 87 (351)
T 3f3f_A 9 GHDDLVHDVVYDF-YGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWE 87 (351)
T ss_dssp CCSSCEEEEEECS-SSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEE
T ss_pred ccccceeEEEEcC-CCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEe
Confidence 4999999999999 999999999999999999987542 23467789999999999999 699999999999999999
Q ss_pred ccCCeeeEEE-EEeeccccccCCCCeEEEeeCCC--CCeEEEeeCCCeEEEEEccCcccceeecC-----------cccc
Q psy988 96 TDQLKYHTQI-HVRSTRGKNATGRKISGIEPMPG--EDKILVTSNDSRIRLYDLRDLNLSCKYKG-----------YVNV 161 (408)
Q Consensus 96 ~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----------~~~~ 161 (408)
+++.+..... ..........|...|.+++|+|+ +.+|++++.||.|++||+++++.+..+.. ....
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (351)
T 3f3f_A 88 EDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHL 167 (351)
T ss_dssp ECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCS
T ss_pred cCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcc
Confidence 9876321000 00001112346679999999999 99999999999999999998876544321 1233
Q ss_pred ccceEEEEecC---CCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCC
Q psy988 162 SSQIKASFSHD---GKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDK 238 (408)
Q Consensus 162 ~~~~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 238 (408)
..+.+++|+|+ +.++++++.++.+.+|+...+... ....+..|...|.++
T Consensus 168 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~----------~~~~~~~h~~~i~~~----------------- 220 (351)
T 3f3f_A 168 QSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLH----------VAAKLPGHKSLIRSI----------------- 220 (351)
T ss_dssp CCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEE----------EEEECCCCCSCEEEE-----------------
T ss_pred cceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCcee----------eeeecCCCCcceeEE-----------------
Confidence 45788999997 899999999999977776543211 122333444445544
Q ss_pred CCCceeeecCCCceeeeeccCCCC----CeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecC
Q psy988 239 SESTGYVLNATGRKISGIEPMPGE----DKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSE 314 (408)
Q Consensus 239 ~~~~~~~~~~~~~~i~~~~~~~~~----~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 314 (408)
+|+|++ ++|++++.||.|++||++++........... .......++....++.+..
T Consensus 221 ------------------~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 280 (351)
T 3f3f_A 221 ------------------SWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLT--NSNMFDNSADVDMDAQGRS 280 (351)
T ss_dssp ------------------EECCCSSCSSEEEEEEETTSCEEEEEEEECC-------------------------------
T ss_pred ------------------EECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCccc--ceeccCCCccccccccccc
Confidence 455555 5689999999999999987655444332222 2333444455555544433
Q ss_pred ----CceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEE
Q psy988 315 ----NQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRV 390 (408)
Q Consensus 315 ----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~i 390 (408)
...+.+|+.... +.+..+.+|...|++++|+| ++++|++++.||.|++
T Consensus 281 ~~~~~~~~~~~~~~~~------------~~~~~~~~h~~~v~~~~~s~----------------~~~~l~s~~~dg~v~i 332 (351)
T 3f3f_A 281 DSNTEEKAELQSNLQV------------ELLSEHDDHNGEVWSVSWNL----------------TGTILSSAGDDGKVRL 332 (351)
T ss_dssp ----------CCSEEE------------EEEEEECTTSSCEEEEEECS----------------SSCCEEEEETTSCEEE
T ss_pred ccccceeeeecccccc------------cEEEEEecccccEEEEEEcC----------------CCCEEEEecCCCcEEE
Confidence 344555554443 56777889999999999999 9999999999999999
Q ss_pred EeCCCCCCcccccc
Q psy988 391 FLNKTKPKHSSLPV 404 (408)
Q Consensus 391 w~~~~~~~~~~~~~ 404 (408)
|++.+++....+..
T Consensus 333 w~~~~~~~~~~~~~ 346 (351)
T 3f3f_A 333 WKATYSNEFKCMSV 346 (351)
T ss_dssp EEECTTSCEEEEEE
T ss_pred EecCcCcchhheee
Confidence 99999877665543
No 86
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.2e-38 Score=272.87 Aligned_cols=272 Identities=16% Similarity=0.208 Sum_probs=209.7
Q ss_pred CceEEEEeccCCeeEeE--EEeCCceEEEEEcCCC---CCEEEEEeCCCcEEEEecCCCC-ceeeeeecCCceeeEEEE-
Q psy988 2 DKTVRLWHISRKECLCC--FQHIDFVTAICFHPRD---DRYFLSGSLDGKLRLWNIPDKK-VAVWNEVEGQTKLITAAN- 74 (408)
Q Consensus 2 Dg~i~vwd~~~~~~~~~--~~h~~~v~~~~~sp~~---~~~l~t~~~dg~i~iw~~~~~~-~~~~~~~~~~~~~v~~~~- 74 (408)
||.|+|||+.+++.... ++|...|.+++|+| + +++|++|+.||.|++||+.+++ .. ..+.+|...|.++.
T Consensus 43 d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~v~~~~~ 119 (357)
T 3i2n_A 43 TGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGA-TSLQQRYLATGDFGGNLHIWNLEAPEMPV--YSVKGHKEIINAIDG 119 (357)
T ss_dssp CEEEEEEEECSSSEEEEEEEEESSCEEEEECTT-CCTTTCCEEEEETTSCEEEECTTSCSSCS--EEECCCSSCEEEEEE
T ss_pred CcEEEEEeCCCCcccceeeecccCcEEEEEEcC-CCCCCceEEEecCCCeEEEEeCCCCCccE--EEEEecccceEEEee
Confidence 89999999999887544 45999999999999 6 7999999999999999999887 44 67889999999995
Q ss_pred -----EecCCCEEEEEecCCEEEEEeccCCe-eeEEEEEeeccccccCCCCeEEEe----eCCCCCeEEEeeCCCeEEEE
Q psy988 75 -----FCENGKFAVVGSYDGRCIFYTTDQLK-YHTQIHVRSTRGKNATGRKISGIE----PMPGEDKILVTSNDSRIRLY 144 (408)
Q Consensus 75 -----~~~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~----~~~~~~~l~~~~~dg~i~i~ 144 (408)
|+|++++|++++.||.|++||+.+.+ ........ .......+.+++ |+|+++++++++.||.|++|
T Consensus 120 ~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~ 195 (357)
T 3i2n_A 120 IGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPV----QGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLF 195 (357)
T ss_dssp ESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCC----TTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEE
T ss_pred ccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceecccc----CCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEE
Confidence 46899999999999999999999876 33222111 111234788887 78999999999999999999
Q ss_pred EccCcccceeecCccccccceEEEEec---CCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEE
Q psy988 145 DLRDLNLSCKYKGYVNVSSQIKASFSH---DGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCA 221 (408)
Q Consensus 145 d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 221 (408)
|+++++..... .+ ...+.+++|+| ++++|++++.||.|++||+++....... ....+..|...|.++
T Consensus 196 d~~~~~~~~~~-~~--~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------~~~~~~~~~~~v~~~ 265 (357)
T 3i2n_A 196 DLRNMALRWET-NI--KNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGF-------ASVSEKAHKSTVWQV 265 (357)
T ss_dssp ETTTTEEEEEE-EC--SSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEE-------EEEEEECCSSCEEEE
T ss_pred ECccCceeeec-CC--CCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccce-------eeeccCCCcCCEEEE
Confidence 99988764432 22 34588999999 9999999999999999999754221100 001122455555555
Q ss_pred EEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCC-------------------
Q psy988 222 VFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDL------------------- 282 (408)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~------------------- 282 (408)
+|+|+++. +|++++.||.|++||++++
T Consensus 266 ~~~~~~~~----------------------------------~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~ 311 (357)
T 3i2n_A 266 RHLPQNRE----------------------------------LFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSV 311 (357)
T ss_dssp EEETTEEE----------------------------------EEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEE
T ss_pred EECCCCCc----------------------------------EEEEEeCCCcEEEeecCCCcccccccCCCCcccccccc
Confidence 55555442 4788999999999999854
Q ss_pred eeeeEEeeccceeceeEEEEcCCCCEEE-EecCCceEEEeecccc
Q psy988 283 NLSCKYKGYVNVSSQIKASFSHDGKYIV-SGSENQCIYIWKTHHD 326 (408)
Q Consensus 283 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~iw~~~~~ 326 (408)
+.+..+..|.. .|.+++|+|++++|+ +++.||.|++|++.+.
T Consensus 312 ~~~~~~~~~~~--~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 312 SLLQNVTLSTQ--PISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp EEEEEEECCSS--CEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred ceeeccccCCC--CeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 34555666544 889999999999998 8999999999999764
No 87
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=2.9e-38 Score=278.25 Aligned_cols=286 Identities=19% Similarity=0.322 Sum_probs=231.4
Q ss_pred eeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEE
Q psy988 14 ECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCI 92 (408)
Q Consensus 14 ~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 92 (408)
+....+. |.+.|.. ++++ ++++|++|+.||.|++||+.+++.. ..+.+|...|.+++|+ ++++++++.||.|+
T Consensus 109 ~~~~~l~~h~~~v~~-~~~~-~g~~l~sg~~dg~i~vwd~~~~~~~--~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~ 182 (445)
T 2ovr_B 109 KSPKVLKGHDDHVIT-CLQF-CGNRIVSGSDDNTLKVWSAVTGKCL--RTLVGHTGGVWSSQMR--DNIIISGSTDRTLK 182 (445)
T ss_dssp CCCEEEECSTTSCEE-EEEE-ETTEEEEEETTSCEEEEETTTCCEE--EECCCCSSCEEEEEEE--TTEEEEEETTSCEE
T ss_pred ceeEEecccCCCcEE-EEEE-cCCEEEEEECCCcEEEEECCCCcEE--EEEcCCCCCEEEEEec--CCEEEEEeCCCeEE
Confidence 3445555 8887643 3555 6889999999999999999998866 6888999999999997 67999999999999
Q ss_pred EEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecC
Q psy988 93 FYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHD 172 (408)
Q Consensus 93 iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (408)
+||+.+++..... ..|...|.++.|+ ++.+++++.||.|++||+++++....+..+... +.++.+ +
T Consensus 183 vwd~~~~~~~~~~--------~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~--v~~~~~--~ 248 (445)
T 2ovr_B 183 VWNAETGECIHTL--------YGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAA--VRCVQY--D 248 (445)
T ss_dssp EEETTTTEEEEEE--------CCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSC--EEEEEE--C
T ss_pred EEECCcCcEEEEE--------CCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCccc--EEEEEE--C
Confidence 9999988654433 2466789999995 678999999999999999999988888776554 667777 7
Q ss_pred CCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCce
Q psy988 173 GKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRK 252 (408)
Q Consensus 173 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (408)
++++++++.||.|++||++++.. ...+..|...+.++.|
T Consensus 249 ~~~l~~~~~dg~i~iwd~~~~~~------------~~~~~~~~~~v~~~~~----------------------------- 287 (445)
T 2ovr_B 249 GRRVVSGAYDFMVKVWDPETETC------------LHTLQGHTNRVYSLQF----------------------------- 287 (445)
T ss_dssp SSCEEEEETTSCEEEEEGGGTEE------------EEEECCCSSCEEEEEE-----------------------------
T ss_pred CCEEEEEcCCCEEEEEECCCCcE------------eEEecCCCCceEEEEE-----------------------------
Confidence 88999999999999999875422 2333444445554444
Q ss_pred eeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccc
Q psy988 253 ISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSS 332 (408)
Q Consensus 253 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 332 (408)
++.++++++.|+.|++||+++++.+..+.+|.. .+.++.+ ++++|++|+.||.|++||+.++
T Consensus 288 --------~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~------ 349 (445)
T 2ovr_B 288 --------DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS--LTSGMEL--KDNILVSGNADSTVKIWDIKTG------ 349 (445)
T ss_dssp --------CSSEEEEEETTSCEEEEETTTCCEEEEECCCCS--CEEEEEE--ETTEEEEEETTSCEEEEETTTC------
T ss_pred --------CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcc--cEEEEEE--eCCEEEEEeCCCeEEEEECCCC------
Confidence 466789999999999999999999988887755 5665555 6789999999999999999876
Q ss_pred cccCccccceeeee---eccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCCCcccc
Q psy988 333 VRRDRNDFWEGIKA---HNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKPKHSSL 402 (408)
Q Consensus 333 ~~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 402 (408)
+.+..+.+ |...|.+++|++ ++|++|+.||.|++||+.+++....+
T Consensus 350 ------~~~~~~~~~~~~~~~v~~~~~~~------------------~~l~s~~~dg~v~iwd~~~~~~~~~~ 398 (445)
T 2ovr_B 350 ------QCLQTLQGPNKHQSAVTCLQFNK------------------NFVITSSDDGTVKLWDLKTGEFIRNL 398 (445)
T ss_dssp ------CEEEEECSTTSCSSCEEEEEECS------------------SEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred ------cEEEEEccCCCCCCCEEEEEECC------------------CEEEEEeCCCeEEEEECCCCceeeee
Confidence 45555554 888999999964 69999999999999999998876555
No 88
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-38 Score=271.74 Aligned_cols=269 Identities=14% Similarity=0.178 Sum_probs=219.4
Q ss_pred CceEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCC
Q psy988 2 DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGK 80 (408)
Q Consensus 2 Dg~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 80 (408)
||.|++||+.+++.+..+. |.+.|.+++|+| ++++|++++.||.|++||+.+++.. ..+. +...+.+++|+|+++
T Consensus 53 dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~-~~~~v~~~~~~~~~~ 128 (369)
T 3zwl_B 53 DSSASVWYSLNGERLGTLDGHTGTIWSIDVDC-FTKYCVTGSADYSIKLWDVSNGQCV--ATWK-SPVPVKRVEFSPCGN 128 (369)
T ss_dssp SSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTTEEEEEETTTCCEE--EEEE-CSSCEEEEEECTTSS
T ss_pred CCEEEEEeCCCchhhhhhhhcCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEE--EEee-cCCCeEEEEEccCCC
Confidence 8999999999999999987 999999999999 9999999999999999999998876 3444 788999999999999
Q ss_pred EEEEEecC-----CEEEEEeccCCeeeEEEEEee---ccccccCCC--CeEEEeeCCCCCeEEEeeCCCeEEEEEccC-c
Q psy988 81 FAVVGSYD-----GRCIFYTTDQLKYHTQIHVRS---TRGKNATGR--KISGIEPMPGEDKILVTSNDSRIRLYDLRD-L 149 (408)
Q Consensus 81 ~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~---~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~ 149 (408)
++++++.+ |.|++||+............. ......+.. .+.+++|+|+++.|++++.||.|++||+++ .
T Consensus 129 ~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 208 (369)
T 3zwl_B 129 YFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNY 208 (369)
T ss_dssp EEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTT
T ss_pred EEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCc
Confidence 99999999 999999998765332222111 111122333 899999999999999999999999999998 6
Q ss_pred ccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcce
Q psy988 150 NLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPEL 229 (408)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 229 (408)
+....+..+.. .+.+++|+|++++|++++.||.|++||+++..... .+. +...+.+
T Consensus 209 ~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~------------~~~-~~~~~~~--------- 264 (369)
T 3zwl_B 209 EYVDSIDLHEK--SISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLK------------KYE-TDCPLNT--------- 264 (369)
T ss_dssp EEEEEEECCSS--CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE------------EEE-CSSCEEE---------
T ss_pred EeEEEEecCCC--ceeEEEECCCCCEEEEecCCceEEEEECCCCceee------------eec-CCCCcee---------
Confidence 67777766554 48899999999999999999999999997643221 111 3334444
Q ss_pred eeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCC--------------eEEEEEcCCCeeeeEEeecccee
Q psy988 230 IIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDS--------------RIRLYDLRDLNLSCKYKGYVNVS 295 (408)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~--------------~i~i~d~~~~~~~~~~~~~~~~~ 295 (408)
++|+|+++++++++.++ .+++||..+++.+..+.+|..
T Consensus 265 --------------------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-- 316 (369)
T 3zwl_B 265 --------------------------AVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFG-- 316 (369)
T ss_dssp --------------------------EEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSS--
T ss_pred --------------------------EEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccC--
Confidence 44555555566666665 899999999999999988765
Q ss_pred ceeEEEEcCCCCEEEEecCCceEEEeecccc
Q psy988 296 SQIKASFSHDGKYIVSGSENQCIYIWKTHHD 326 (408)
Q Consensus 296 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 326 (408)
.|.+++|+|++++|++++.||.|++|++..+
T Consensus 317 ~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 317 PLNTVAISPQGTSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEEECHH
T ss_pred cEEEEEECCCCCEEEEEcCCCeEEEEECccc
Confidence 8899999999999999999999999999875
No 89
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.5e-39 Score=285.26 Aligned_cols=285 Identities=16% Similarity=0.254 Sum_probs=208.8
Q ss_pred CCceEEEEeccCCeeEeEE---EeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEec
Q psy988 1 MDKTVRLWHISRKECLCCF---QHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCE 77 (408)
Q Consensus 1 ~Dg~i~vwd~~~~~~~~~~---~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~ 77 (408)
.||+|+|||+.+++....+ +|.+.|++|+|+|.++++|++|+.||+|++||++++..........+...+.+++|+|
T Consensus 140 ~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (435)
T 4e54_B 140 KGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSA 219 (435)
T ss_dssp TTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEET
T ss_pred CCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECC
Confidence 3899999999887654444 4999999999999678999999999999999998776553333444556788999999
Q ss_pred CCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCC-eEEEeeCCCeEEEEEccCcccceeec
Q psy988 78 NGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGED-KILVTSNDSRIRLYDLRDLNLSCKYK 156 (408)
Q Consensus 78 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~ 156 (408)
++++|++|+.||.|++||++.... .....|...|.+++|+|+++ .+++++.|+.|++||+++.+....+.
T Consensus 220 ~~~~l~~g~~dg~i~~wd~~~~~~---------~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~ 290 (435)
T 4e54_B 220 SSRMVVTGDNVGNVILLNMDGKEL---------WNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFL 290 (435)
T ss_dssp TTTEEEEECSSSBEEEEESSSCBC---------CCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCS
T ss_pred CCCEEEEEeCCCcEeeeccCccee---------EEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEE
Confidence 999999999999999999875321 22345678999999999886 57788999999999999876554432
Q ss_pred C-ccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecC
Q psy988 157 G-YVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQME 235 (408)
Q Consensus 157 ~-~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 235 (408)
. ..+...+.+++|+|++++|++++.||.|++||+.++............ ...........|+|++..++
T Consensus 291 ~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~---- 360 (435)
T 4e54_B 291 YSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHR------HFQHLTPIKAAWHPRYNLIV---- 360 (435)
T ss_dssp BCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCC------CCSSSCCCBCEECSSSSCEE----
T ss_pred EeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEeccccc------ccccceeEEEEEcCCCCEEE----
Confidence 2 223345889999999999999999999999999765433221110000 00011122334555544443
Q ss_pred CCCCCCceeeecCCCceeeeeccCCCCCeEEEe-cCCCeEEEEEcCCCeeeeEEeeccceeceeEE-EEcCCCCEEEEec
Q psy988 236 PDKSESTGYVLNATGRKISGIEPMPGEDKILVT-SNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKA-SFSHDGKYIVSGS 313 (408)
Q Consensus 236 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~-~~s~~~~~l~~~~ 313 (408)
+.+++++..++++ ..++.|++||..+++.+..+..+. ...|.++ +|+|+|++|++|+
T Consensus 361 --------------------~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~-~~~v~s~~~fspdg~~lasg~ 419 (435)
T 4e54_B 361 --------------------VGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPE-SSGISSLNEFNPMGDTLASAM 419 (435)
T ss_dssp --------------------EECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSS-CCCCCCEEEECTTSSCEEEEC
T ss_pred --------------------EEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCC-CCcEEEEEEECCCCCEEEEEc
Confidence 3455556555554 445689999999999888876432 2356665 6999999999986
Q ss_pred CCceEEEeecccc
Q psy988 314 ENQCIYIWKTHHD 326 (408)
Q Consensus 314 ~dg~i~iw~~~~~ 326 (408)
|+.|+||+++++
T Consensus 420 -d~~i~iW~~~~g 431 (435)
T 4e54_B 420 -GYHILIWSQQEA 431 (435)
T ss_dssp -SSEEEECCCC--
T ss_pred -CCcEEEEECCcC
Confidence 789999999876
No 90
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.4e-38 Score=274.08 Aligned_cols=268 Identities=12% Similarity=0.096 Sum_probs=214.0
Q ss_pred CceEEEEeccCCe--eEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecC
Q psy988 2 DKTVRLWHISRKE--CLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCEN 78 (408)
Q Consensus 2 Dg~i~vwd~~~~~--~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 78 (408)
||.|++||+.+++ .+..+. |...|.+++|+| ++++|++++.||.|++||+.+++......+..|...|.+++|+|+
T Consensus 29 d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 107 (372)
T 1k8k_C 29 NHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP-DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPN 107 (372)
T ss_dssp SSEEEEEEEETTEEEEEEEEECCSSCEEEEEEET-TTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTT
T ss_pred CCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeC-CCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCC
Confidence 7999999999997 777776 999999999999 999999999999999999998876654566789999999999999
Q ss_pred CCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEcc-----------
Q psy988 79 GKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLR----------- 147 (408)
Q Consensus 79 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~----------- 147 (408)
+++|++++.||.|++||++........... ...|...|.+++|+|++++|++++.||.|++||++
T Consensus 108 ~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~ 183 (372)
T 1k8k_C 108 EKKFAVGSGSRVISICYFEQENDWWVCKHI----KKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPT 183 (372)
T ss_dssp SSEEEEEETTSSEEEEEEETTTTEEEEEEE----CTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCB
T ss_pred CCEEEEEeCCCEEEEEEecCCCcceeeeee----ecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEccccccccccccc
Confidence 999999999999999999887642222111 13456789999999999999999999999999954
Q ss_pred -------CcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEE
Q psy988 148 -------DLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTC 220 (408)
Q Consensus 148 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 220 (408)
.++....+..+.. .+.+++|+|++++|++++.||.|++||++++. .+..+..|...+.+
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~------------~~~~~~~~~~~v~~ 249 (372)
T 1k8k_C 184 PWGSKMPFGELMFESSSSCG--WVHGVCFSANGSRVAWVSHDSTVCLADADKKM------------AVATLASETLPLLA 249 (372)
T ss_dssp TTBSCCCTTCEEEECCCCSS--CEEEEEECSSSSEEEEEETTTEEEEEEGGGTT------------EEEEEECSSCCEEE
T ss_pred ccccccchhhheEecCCCCC--eEEEEEECCCCCEEEEEeCCCEEEEEECCCCc------------eeEEEccCCCCeEE
Confidence 4566666665543 48899999999999999999999999997542 22334445555555
Q ss_pred EEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCC--Cee--e-----------
Q psy988 221 AVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRD--LNL--S----------- 285 (408)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~--~~~--~----------- 285 (408)
++|+|+ +++++++ .|+.|++|++.+ ++. .
T Consensus 250 ~~~~~~-----------------------------------~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 293 (372)
T 1k8k_C 250 VTFITE-----------------------------------SSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQ 293 (372)
T ss_dssp EEEEET-----------------------------------TEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC-----
T ss_pred EEEecC-----------------------------------CCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchh
Confidence 555554 4445666 899999999987 421 0
Q ss_pred -------------------------eEE-eeccceeceeEEEEc-CCC---CEEEEecCCceEEEeecccc
Q psy988 286 -------------------------CKY-KGYVNVSSQIKASFS-HDG---KYIVSGSENQCIYIWKTHHD 326 (408)
Q Consensus 286 -------------------------~~~-~~~~~~~~v~~~~~s-~~~---~~l~~~~~dg~i~iw~~~~~ 326 (408)
..+ .+| ...|.+++|. ++| ++|++|+.||.|++|++.+.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~ 362 (372)
T 1k8k_C 294 RGLTARERFQNLDKKASSEGSAAAGAGLDSLH--KNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL 362 (372)
T ss_dssp ---CHHHHHHHCCCCC---------CCCSSSS--SSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred hhcchhhhhhhcccccccccCccccccccccc--cCCcceeEEecCCCcceeeEEEecCCCceEEEEecCh
Confidence 111 244 3488999866 677 99999999999999999875
No 91
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=7.8e-38 Score=265.97 Aligned_cols=265 Identities=21% Similarity=0.369 Sum_probs=212.4
Q ss_pred CCceEEEEeccCCe-----eEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEE
Q psy988 1 MDKTVRLWHISRKE-----CLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAAN 74 (408)
Q Consensus 1 ~Dg~i~vwd~~~~~-----~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~ 74 (408)
.||+|+|||+.+.+ +...+. |...|.+++|+| ++++|++++.|+.|++|+....... .....+...+..+.
T Consensus 59 ~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~-dg~~l~s~~~d~~i~~~~~~~~~~~--~~~~~~~~~~~~~~ 135 (340)
T 4aow_A 59 RDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISS-DGQFALSGSWDGTLRLWDLTTGTTT--RRFVGHTKDVLSVA 135 (340)
T ss_dssp TTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEE--EEEECCSSCEEEEE
T ss_pred CCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECC-CCCEEEEEcccccceEEeeccccee--eeecCCCCceeEEE
Confidence 48999999997654 344554 999999999999 9999999999999999999887765 56677788899999
Q ss_pred EecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCC--CeEEEeeCCCeEEEEEccCcccc
Q psy988 75 FCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGE--DKILVTSNDSRIRLYDLRDLNLS 152 (408)
Q Consensus 75 ~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~ 152 (408)
+++++++|++++.|+.+++||........ .....|...+..++|++++ ..+++++.|+.|++||+++++..
T Consensus 136 ~~~~~~~l~s~s~d~~~~~~d~~~~~~~~-------~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~ 208 (340)
T 4aow_A 136 FSSDNRQIVSGSRDKTIKLWNTLGVCKYT-------VQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLK 208 (340)
T ss_dssp ECTTSSCEEEEETTSCEEEECTTSCEEEE-------ECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEE
T ss_pred EeecCccceeecCCCeEEEEEeCCCceEE-------EEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCcee
Confidence 99999999999999999999987654321 1123566789999998764 46788899999999999999988
Q ss_pred eeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeee
Q psy988 153 CKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIA 232 (408)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 232 (408)
..+.+|... +.+++|+|++++|++++.||.|++||+++..... .+. +...
T Consensus 209 ~~~~~h~~~--v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~------------~~~-~~~~--------------- 258 (340)
T 4aow_A 209 TNHIGHTGY--LNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLY------------TLD-GGDI--------------- 258 (340)
T ss_dssp EEECCCSSC--EEEEEECTTSSEEEEEETTCEEEEEETTTTEEEE------------EEE-CSSC---------------
T ss_pred eEecCCCCc--EEEEEECCCCCEEEEEeCCCeEEEEEeccCceee------------eec-CCce---------------
Confidence 888877654 8899999999999999999999999997643221 111 1223
Q ss_pred ecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeec-------cceeceeEEEEcCC
Q psy988 233 QMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGY-------VNVSSQIKASFSHD 305 (408)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-------~~~~~v~~~~~s~~ 305 (408)
+.+++|+|++. +++++.|+.|++||++++.....+... .+...|++++|+|+
T Consensus 259 --------------------v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d 317 (340)
T 4aow_A 259 --------------------INALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSAD 317 (340)
T ss_dssp --------------------EEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTT
T ss_pred --------------------EEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCC
Confidence 44445555544 445677999999999988877665432 23457899999999
Q ss_pred CCEEEEecCCceEEEeecccc
Q psy988 306 GKYIVSGSENQCIYIWKTHHD 326 (408)
Q Consensus 306 ~~~l~~~~~dg~i~iw~~~~~ 326 (408)
|++|++|+.||.|+|||+.++
T Consensus 318 g~~l~sgs~Dg~v~iW~~~tG 338 (340)
T 4aow_A 318 GQTLFAGYTDNLVRVWQVTIG 338 (340)
T ss_dssp SSEEEEEETTSCEEEEEEEC-
T ss_pred CCEEEEEeCCCEEEEEeCCCc
Confidence 999999999999999999886
No 92
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=8.7e-38 Score=263.11 Aligned_cols=266 Identities=13% Similarity=0.250 Sum_probs=211.1
Q ss_pred CCceEEEEeccCCeeEeEEE---eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEec
Q psy988 1 MDKTVRLWHISRKECLCCFQ---HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCE 77 (408)
Q Consensus 1 ~Dg~i~vwd~~~~~~~~~~~---h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~ 77 (408)
+|++|+|||+.++++++.+. |...|++++|+| ++++|++|+.||+|++|++++++.. ..+.+|...+.++. +
T Consensus 43 ~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~-~~~~l~sgs~Dg~v~iw~~~~~~~~--~~~~~h~~~~~~~~--~ 117 (318)
T 4ggc_A 43 LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIK-EGNYLAVGTSSAEVQLWDVQQQKRL--RNMTSHSARVGSLS--W 117 (318)
T ss_dssp ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEE--EEEECCSSCEEEEE--E
T ss_pred eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECC-CCCEEEEEECCCcEEEeecCCceeE--EEecCccceEEEee--c
Confidence 48999999999999998875 788899999999 9999999999999999999998876 67889988887655 4
Q ss_pred CCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceee--
Q psy988 78 NGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKY-- 155 (408)
Q Consensus 78 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-- 155 (408)
++..+++++.++.+++|+........... ..|...+..+.+.++++++++++.|+.|++||+++++.....
T Consensus 118 ~~~~l~s~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 190 (318)
T 4ggc_A 118 NSYILSSGSRSGHIHHHDVRVAEHHVATL-------SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQ 190 (318)
T ss_dssp ETTEEEEEETTSEEEEEETTSSSCEEEEE-------ECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSE
T ss_pred CCCEEEEEecCCceEeeecCCCceeEEEE-------cCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCccccccee
Confidence 67899999999999999988765433221 245678999999999999999999999999999987643322
Q ss_pred cCccccccceEEEEecCCCEE---EEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeee
Q psy988 156 KGYVNVSSQIKASFSHDGKYI---VSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIA 232 (408)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~l---~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 232 (408)
........+..+.++|++..+ ++++.++.|++||....... ....+...+..+.|+|++..++
T Consensus 191 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~-------------~~~~~~~~v~~~~~~~~~~~~~- 256 (318)
T 4ggc_A 191 TFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL-------------SAVDAHSQVCSILWSPHYKELI- 256 (318)
T ss_dssp EECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEE-------------EEEECSSCEEEEEEETTTTEEE-
T ss_pred eecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccc-------------ccccceeeeeeeeecccccceE-
Confidence 112223447788898876543 45677899999998654322 1223444555666666554442
Q ss_pred ecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEe
Q psy988 233 QMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSG 312 (408)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 312 (408)
+++++.|+.|++||+++++++..+.+|.. .|++++|+|+|++|++|
T Consensus 257 --------------------------------~~sg~~d~~i~iwd~~~~~~~~~l~gH~~--~V~~l~~spdg~~l~S~ 302 (318)
T 4ggc_A 257 --------------------------------SGHGFAQNQLVIWKYPTMAKVAELKGHTS--RVLSLTMSPDGATVASA 302 (318)
T ss_dssp --------------------------------EEECTTTCCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSCEEEE
T ss_pred --------------------------------EEEEcCCCEEEEEECCCCcEEEEEcCCCC--CEEEEEEcCCCCEEEEE
Confidence 23356899999999999999999998866 89999999999999999
Q ss_pred cCCceEEEeecccc
Q psy988 313 SENQCIYIWKTHHD 326 (408)
Q Consensus 313 ~~dg~i~iw~~~~~ 326 (408)
+.||+|+|||+.+.
T Consensus 303 s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 303 AADETLRLWRCFEL 316 (318)
T ss_dssp ETTTEEEEECCSCC
T ss_pred ecCCeEEEEECCCC
Confidence 99999999998753
No 93
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-39 Score=285.95 Aligned_cols=280 Identities=8% Similarity=-0.004 Sum_probs=201.3
Q ss_pred CCeeEeEEEeCCceEEEEEcCCCC---------CEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEE
Q psy988 12 RKECLCCFQHIDFVTAICFHPRDD---------RYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFA 82 (408)
Q Consensus 12 ~~~~~~~~~h~~~v~~~~~sp~~~---------~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 82 (408)
+++....+.+.+.|.+|+|+| ++ ++||+|+.++.. -..+|+++.+
T Consensus 123 ~~r~~~~~~~~~~V~sv~w~p-~~~~~~~~~~~~~LAv~~~~~~~-------------------------~~~~~~~~~l 176 (524)
T 2j04_B 123 GKRRGFIYNVGGLVTDIAWLN-IEENTDIGKDIQYLAVAVSQYMD-------------------------EPLNEHLEMF 176 (524)
T ss_dssp CCSCEEEEECCC--CCCSCEE-ECCCCSSCSSEEEEEEEEEC--------------------------------------
T ss_pred CCcceEEEECCCceeEEEecc-cCCCCccCcCCeEEEEEEecccC-------------------------Cccchhhhhh
Confidence 345556677899999999999 65 799999876420 0136899999
Q ss_pred EEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCC------CCeEEEeeCCCeEEEEEccCcccc----
Q psy988 83 VVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPG------EDKILVTSNDSRIRLYDLRDLNLS---- 152 (408)
Q Consensus 83 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~dg~i~i~d~~~~~~~---- 152 (408)
++++.|++|+||++.+.+...... .. ...|.+.|.+++|+|+ +.+|++++.||+|++||+.++...
T Consensus 177 aS~s~D~tI~iWd~~~~~~~~~~~-~~---l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~ 252 (524)
T 2j04_B 177 DKEKHSSCIQIFKMNTSTLHCVKV-QT---IVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVF 252 (524)
T ss_dssp -----CEEEEEEEEETTTCCEEEE-EE---EEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEE
T ss_pred ccCCCCceEEEEEccCCCCCceEE-EE---EEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccc
Confidence 999999999999998765432111 00 1134468999999996 579999999999999999876422
Q ss_pred -------eeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeC
Q psy988 153 -------CKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAP 225 (408)
Q Consensus 153 -------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 225 (408)
..+.+|. ..+.+++|++++ .|++|+.||+|++||++++. .+...+..|...|.++++
T Consensus 253 ~~~~~p~~~l~~h~--~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~-----------~~~~~~~~H~~~V~sv~~-- 316 (524)
T 2j04_B 253 KMCEKPSLTLSLAD--SLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPE-----------VPSFYDQVHDSYILSVST-- 316 (524)
T ss_dssp ECCCSCSEEECCTT--TCEEEEEESSSS-EEEEEETTSEEEEEETTBCS-----------SCSEEEECSSSCEEEEEE--
T ss_pred eeecCceEEEEcCC--CCEEEEEecCCC-eEEEEeCCCEEEEEECCCCC-----------CceEEeecccccEEEEEE--
Confidence 2344444 458899999864 89999999999999996431 111223444444444411
Q ss_pred CcceeeeecCCCCCCCceeeecCCCceeeeeccCCCC-CeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcC
Q psy988 226 CPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGE-DKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSH 304 (408)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~ 304 (408)
+|+|++ .+|++++.|++|+|||++++++...+.+|.....+.+++|+|
T Consensus 317 -------------------------------~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp 365 (524)
T 2j04_B 317 -------------------------------AYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCP 365 (524)
T ss_dssp -------------------------------ECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEET
T ss_pred -------------------------------EcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCC
Confidence 345565 678999999999999999988887877765434577899999
Q ss_pred CCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEec
Q psy988 305 DGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADF 384 (408)
Q Consensus 305 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~ 384 (408)
+++.+++++.|++|++||+..+ .++..+.+|.+.|++++|+| +|++|++|+.
T Consensus 366 ~~~~l~s~~~d~tv~lwd~~~~------------~~~~~l~gH~~~V~sva~Sp----------------~g~~l~Sgs~ 417 (524)
T 2j04_B 366 QIYSYIYSDGASSLRAVPSRAA------------FAVHPLVSRETTITAIGVSR----------------LHPMVLAGSA 417 (524)
T ss_dssp TTTEEEEECSSSEEEEEETTCT------------TCCEEEEECSSCEEEEECCS----------------SCCBCEEEET
T ss_pred CcCeEEEeCCCCcEEEEECccc------------ccceeeecCCCceEEEEeCC----------------CCCeEEEEEC
Confidence 9999999999999999999876 45567889999999999999 9999999999
Q ss_pred CCeEEEEeCCCC
Q psy988 385 NGVIRVFLNKTK 396 (408)
Q Consensus 385 dg~v~iw~~~~~ 396 (408)
||+|++|++..+
T Consensus 418 Dgtv~lwd~~~~ 429 (524)
T 2j04_B 418 DGSLIITNAARR 429 (524)
T ss_dssp TTEEECCBSCSS
T ss_pred CCEEEEEechHh
Confidence 999999998654
No 94
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-39 Score=284.80 Aligned_cols=287 Identities=15% Similarity=0.167 Sum_probs=226.3
Q ss_pred CCceEEEEeccC---Ce---eEeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecC---CCCceeeeeec-------
Q psy988 1 MDKTVRLWHISR---KE---CLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIP---DKKVAVWNEVE------- 64 (408)
Q Consensus 1 ~Dg~i~vwd~~~---~~---~~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~---~~~~~~~~~~~------- 64 (408)
.||+|+|||+.+ +. ....+.|.+.|.+++|+| ++++|++|+.||.|++||+. .++.. ....
T Consensus 84 ~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~dg~i~vwd~~~~~~~~~~--~~~~~~~i~~~ 160 (437)
T 3gre_A 84 DQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIP-NFDAFAVSSKDGQIIVLKVNHYQQESEV--KFLNCECIRKI 160 (437)
T ss_dssp TTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECT-TSSEEEEEETTSEEEEEEEEEEEETTEE--EEEEEEEEEEE
T ss_pred CCceEEEeECcccccCcccceeeeccCCCCEEEEEEeC-CCCEEEEEeCCCEEEEEEeccccCCcee--eccccceeEEE
Confidence 389999999977 43 455567999999999999 99999999999999999995 44433 1111
Q ss_pred ---C--CceeeEEEE--EecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeC
Q psy988 65 ---G--QTKLITAAN--FCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSN 137 (408)
Q Consensus 65 ---~--~~~~v~~~~--~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 137 (408)
. +...+.++. +++++.+|++++.||.|++||+++.+....+... .|...|.+++|+|++++|++++.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~------~h~~~v~~~~~s~~~~~l~s~~~ 234 (437)
T 3gre_A 161 NLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENS------PRHGAVSSICIDEECCVLILGTT 234 (437)
T ss_dssp EGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECC------GGGCCEEEEEECTTSCEEEEEET
T ss_pred EccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccC------CCCCceEEEEECCCCCEEEEEcC
Confidence 1 445566666 4578999999999999999999988765544321 14568999999999999999999
Q ss_pred CCeEEEEEccCcccceeec-CccccccceEEEE----ecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccc
Q psy988 138 DSRIRLYDLRDLNLSCKYK-GYVNVSSQIKASF----SHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIK 212 (408)
Q Consensus 138 dg~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 212 (408)
||.|++||+++++.+..+. .+. ..+.++++ ++++.+|++++.||.|++||++++. ....+.
T Consensus 235 dg~i~iwd~~~~~~~~~~~~~~~--~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~------------~~~~~~ 300 (437)
T 3gre_A 235 RGIIDIWDIRFNVLIRSWSFGDH--APITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGH------------CQYAFI 300 (437)
T ss_dssp TSCEEEEETTTTEEEEEEBCTTC--EEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTE------------EEEEEE
T ss_pred CCeEEEEEcCCccEEEEEecCCC--CceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCc------------EEEEEE
Confidence 9999999999988887765 333 34778854 4578899999999999999997653 334456
Q ss_pred cccceEEEEEEeCCcceeeeecCCCCCCCceeeec--CCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEee
Q psy988 213 AHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLN--ATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKG 290 (408)
Q Consensus 213 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 290 (408)
.|...+..+.|+|+++.+.. ..+. .+...|.+++|+ ++++|++++.|+.|++||+.+++....+.+
T Consensus 301 ~~~~~~~~~~~~~~~~~l~~-----------~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~ 368 (437)
T 3gre_A 301 NSDEQPSMEHFLPIEKGLEE-----------LNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVIS 368 (437)
T ss_dssp SSSSCCCGGGGSCBCSSGGG-----------CCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEEC
T ss_pred cCCCCCccceeccccccccc-----------ceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEec
Confidence 66667777777777665511 1122 377889999999 789999999999999999999988877765
Q ss_pred cc-----------------------------------ceeceeEEEEcCC--CCEEEEecCCceEEEee
Q psy988 291 YV-----------------------------------NVSSQIKASFSHD--GKYIVSGSENQCIYIWK 322 (408)
Q Consensus 291 ~~-----------------------------------~~~~v~~~~~s~~--~~~l~~~~~dg~i~iw~ 322 (408)
+. +...|.+++|+++ +.+|++|+.||.|+||+
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 369 PSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp C--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 31 3457889999998 78999999999999995
No 95
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.6e-38 Score=271.45 Aligned_cols=270 Identities=15% Similarity=0.151 Sum_probs=200.0
Q ss_pred CceEEEEeccCCee--------EeE--EE-eCCceEEEEEcCCCCCEEEEE-----------eCCCcEEEEecCCCCcee
Q psy988 2 DKTVRLWHISRKEC--------LCC--FQ-HIDFVTAICFHPRDDRYFLSG-----------SLDGKLRLWNIPDKKVAV 59 (408)
Q Consensus 2 Dg~i~vwd~~~~~~--------~~~--~~-h~~~v~~~~~sp~~~~~l~t~-----------~~dg~i~iw~~~~~~~~~ 59 (408)
|+.|++|++..+.. ... +. |.+.|.+++++ ++.+++| +.|+.+++|++.+.....
T Consensus 42 ~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~---~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~ 118 (365)
T 4h5i_A 42 PNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS---KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQL 118 (365)
T ss_dssp CEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE---TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEE
T ss_pred CCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC---CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceE
Confidence 56799999876532 122 22 78889888775 4456655 457889999987654321
Q ss_pred --ee-----eecCCceeeEEEEEecCCCEEEEEe--cCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCC
Q psy988 60 --WN-----EVEGQTKLITAANFCENGKFAVVGS--YDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGED 130 (408)
Q Consensus 60 --~~-----~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 130 (408)
.. ....+...+.+++|+|||+++++++ .|++|++||+++.+....+. |...|.+++|+|+++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~---------~~~~V~~v~fspdg~ 189 (365)
T 4h5i_A 119 EFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE---------TRGEVKDLHFSTDGK 189 (365)
T ss_dssp EEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE---------CSSCCCEEEECTTSS
T ss_pred EEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC---------CCCceEEEEEccCCc
Confidence 11 1223445689999999999987554 78999999999987655432 345799999999999
Q ss_pred eEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecCc----eEEEeeeccceeeeeecccCCCc
Q psy988 131 KILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQ----CIYIWKTHHDYAKFSSVRRDRND 206 (408)
Q Consensus 131 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~ 206 (408)
++++++. +.+++|+..+++.........+...+.+++|+|+++++++++.|+ .+++|++.........
T Consensus 190 ~l~s~s~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~------- 261 (365)
T 4h5i_A 190 VVAYITG-SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLR------- 261 (365)
T ss_dssp EEEEECS-SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEE-------
T ss_pred eEEeccc-eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceeccee-------
Confidence 9999885 457778777777655444333445588999999999999999887 6788887543221100
Q ss_pred cccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeee
Q psy988 207 FWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSC 286 (408)
Q Consensus 207 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 286 (408)
. ..+..+...|++++|+|+|++|++|+.|++|+|||+++++++.
T Consensus 262 -~-----------------------------------~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~ 305 (365)
T 4h5i_A 262 -S-----------------------------------KQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSK 305 (365)
T ss_dssp -E-----------------------------------EEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEE
T ss_pred -e-----------------------------------eeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEE
Confidence 0 1122455567777778888889999999999999999999988
Q ss_pred EE-eeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCcc
Q psy988 287 KY-KGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAK 329 (408)
Q Consensus 287 ~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 329 (408)
.+ .+|.. .|++++|||||++||+|+.|++|+||++......
T Consensus 306 ~~~~gH~~--~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~~~~ 347 (365)
T 4h5i_A 306 IFKQAHSF--AITEVTISPDSTYVASVSAANTIHIIKLPLNYAN 347 (365)
T ss_dssp EETTSSSS--CEEEEEECTTSCEEEEEETTSEEEEEECCTTTTC
T ss_pred EecCcccC--CEEEEEECCCCCEEEEEeCCCeEEEEEcCCCCcC
Confidence 76 56655 8999999999999999999999999999765433
No 96
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.4e-38 Score=276.58 Aligned_cols=296 Identities=11% Similarity=0.131 Sum_probs=221.1
Q ss_pred ceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCc--eeeeeecCCceeeEEEEEec-CCCEEEEEecCCEEEEEeccCCe
Q psy988 24 FVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKV--AVWNEVEGQTKLITAANFCE-NGKFAVVGSYDGRCIFYTTDQLK 100 (408)
Q Consensus 24 ~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~--~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~ 100 (408)
....++++|+...++++++.||.|+||++..... .....+.+|...|.+++|+| ++++|++++.||.|++|++.+..
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~ 115 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG 115 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence 4456888883333445678899999999966422 12246789999999999999 99999999999999999998864
Q ss_pred eeEEEEEeeccccccCCCCeEEEeeCCCC-CeEEEeeCCCeEEEEEccCcccceee--cCccccccceEEEEecCCCEEE
Q psy988 101 YHTQIHVRSTRGKNATGRKISGIEPMPGE-DKILVTSNDSRIRLYDLRDLNLSCKY--KGYVNVSSQIKASFSHDGKYIV 177 (408)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~ 177 (408)
...... ........|...|.+++|+|++ +.|++++.||.|++||+++++....+ ..|. ..+.+++|+|++++|+
T Consensus 116 ~~~~~~-~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~ 192 (402)
T 2aq5_A 116 LVLPLR-EPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHP--DTIYSVDWSRDGALIC 192 (402)
T ss_dssp CSSCBC-SCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCC--SCEEEEEECTTSSCEE
T ss_pred CccccC-CceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCC--CceEEEEECCCCCEEE
Confidence 211000 0111123566899999999998 68999999999999999999888887 4554 4588999999999999
Q ss_pred EeecCceEEEeeeccceeeeeecccCCCcccccc-ccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeee
Q psy988 178 SGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGI-KAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGI 256 (408)
Q Consensus 178 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 256 (408)
+++.||.|++||++++... ..+ ..|.. ..+.++
T Consensus 193 ~~~~d~~i~iwd~~~~~~~------------~~~~~~~~~----------------------------------~~~~~~ 226 (402)
T 2aq5_A 193 TSCRDKRVRVIEPRKGTVV------------AEKDRPHEG----------------------------------TRPVHA 226 (402)
T ss_dssp EEETTSEEEEEETTTTEEE------------EEEECSSCS----------------------------------SSCCEE
T ss_pred EEecCCcEEEEeCCCCcee------------eeeccCCCC----------------------------------CcceEE
Confidence 9999999999999764322 111 12211 125566
Q ss_pred ccCCCCCeEEEe---cCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEE-EecCCceEEEeeccccCccccc
Q psy988 257 EPMPGEDKILVT---SNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIV-SGSENQCIYIWKTHHDYAKFSS 332 (408)
Q Consensus 257 ~~~~~~~~l~~~---~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~ 332 (408)
.|+|++++|+++ +.|+.|++||+++++.........+...+.+++|+|++++|+ +|+.||.|++|++.++..
T Consensus 227 ~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~---- 302 (402)
T 2aq5_A 227 VFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAP---- 302 (402)
T ss_dssp EECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTT----
T ss_pred EEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCc----
Confidence 677777778888 799999999999876533333323344788999999999996 566899999999987621
Q ss_pred cccCccccceeeee--eccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCC
Q psy988 333 VRRDRNDFWEGIKA--HNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKP 397 (408)
Q Consensus 333 ~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 397 (408)
.+..+.. |...|.+++|+| ++.++++ .|+.+++|++.+++
T Consensus 303 -------~~~~l~~~~~~~~v~~~~~sp----------------~~~~~~s--~~~~~~~~~l~~~~ 344 (402)
T 2aq5_A 303 -------FLHYLSMFSSKESQRGMGYMP----------------KRGLEVN--KCEIARFYKLHERK 344 (402)
T ss_dssp -------CEEEEEEECCSSCCSEEEECC----------------GGGSCGG--GTEEEEEEEEETTE
T ss_pred -------ceEeecccccCCcccceEEec----------------cccccee--cceeEEEEEcCCCc
Confidence 1334444 458999999999 7877764 46799999988754
No 97
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1e-37 Score=272.01 Aligned_cols=311 Identities=15% Similarity=0.187 Sum_probs=209.3
Q ss_pred CCceEEEEeccCCeeEeEEE--------------eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCC
Q psy988 1 MDKTVRLWHISRKECLCCFQ--------------HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQ 66 (408)
Q Consensus 1 ~Dg~i~vwd~~~~~~~~~~~--------------h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~ 66 (408)
.||.|++||+.+++....+. |...|.+++|+|.++.+|++++.||.|++||+.+++.. ..+. +
T Consensus 64 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~~-~ 140 (408)
T 4a11_B 64 SDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTA--DVFN-F 140 (408)
T ss_dssp TTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEE--EEEE-C
T ss_pred CCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccc--eecc-C
Confidence 38999999999887766654 99999999999977789999999999999999988765 3333 6
Q ss_pred ceeeEEEEEecC---CCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCe-EEEeeCCCeEE
Q psy988 67 TKLITAANFCEN---GKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDK-ILVTSNDSRIR 142 (408)
Q Consensus 67 ~~~v~~~~~~~~---~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~ 142 (408)
...+.++.|++. +.++++++.||.|++||+++.+....+. .|...|.+++|+|+++. +++++.||.|+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~ll~~~~~dg~i~ 212 (408)
T 4a11_B 141 EETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQ--------GHRQEILAVSWSPRYDYILATASADSRVK 212 (408)
T ss_dssp SSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEEC--------CCCSCEEEEEECSSCTTEEEEEETTSCEE
T ss_pred CCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeec--------CCCCcEEEEEECCCCCcEEEEEcCCCcEE
Confidence 678899999884 4599999999999999999876544332 45679999999999985 88999999999
Q ss_pred EEEccCcc-cceeecC-------------ccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccc
Q psy988 143 LYDLRDLN-LSCKYKG-------------YVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFW 208 (408)
Q Consensus 143 i~d~~~~~-~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 208 (408)
+||++++. ....+.. ..+...+.+++|+|++++|++++.||.|++||+.++.....
T Consensus 213 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~---------- 282 (408)
T 4a11_B 213 LWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLV---------- 282 (408)
T ss_dssp EEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCC----------
T ss_pred EEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCcccee----------
Confidence 99998765 2222211 12334588999999999999999999999999976532211
Q ss_pred cccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEE
Q psy988 209 EGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKY 288 (408)
Q Consensus 209 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 288 (408)
...+.. ......+........+..+++++.++.|++||+.+++++..+
T Consensus 283 --~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~ 330 (408)
T 4a11_B 283 --NYGKVC------------------------------NNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITML 330 (408)
T ss_dssp --CCCCCC------------------------------CCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEE
T ss_pred --cccccc------------------------------ccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeee
Confidence 000000 000001111112223455677788999999999999999999
Q ss_pred eeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccC
Q psy988 289 KGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQME 368 (408)
Q Consensus 289 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~ 368 (408)
.+|.. .|.+++|+|++++|++|+.||.|++|++.+.. .+.....+. ....+.|.
T Consensus 331 ~~~~~--~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~------------~~~~~~~~~---~~~~~~~~--------- 384 (408)
T 4a11_B 331 KGHYK--TVDCCVFQSNFQELYSGSRDCNILAWVPSLYE------------PVPDDDETT---TKSQLNPA--------- 384 (408)
T ss_dssp CCCSS--CEEEEEEETTTTEEEEEETTSCEEEEEECC-------------------------------------------
T ss_pred ccCCC--eEEEEEEcCCCCEEEEECCCCeEEEEeCCCCC------------ccCCCCceE---eccccccc---------
Confidence 88765 88999999999999999999999999998862 222222221 22334442
Q ss_pred CCCCCCcccEEEEEecCCeEEEEeCCCC
Q psy988 369 PDKSESTGYVLVSADFNGVIRVFLNKTK 396 (408)
Q Consensus 369 ~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 396 (408)
....+.+++.|+.+++|+.+..
T Consensus 385 ------~~~~~~~~~~~~~~~~W~~~~~ 406 (408)
T 4a11_B 385 ------FEDAWSSSDEEGGTSAWSHPQF 406 (408)
T ss_dssp ----------------------------
T ss_pred ------cceeecccCccCceeecCCccc
Confidence 3445667778999999987754
No 98
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=4.3e-38 Score=273.43 Aligned_cols=271 Identities=16% Similarity=0.213 Sum_probs=213.0
Q ss_pred CceEEEEeccCCe----eEeEE-EeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCc-----eeeeeecCCceeeE
Q psy988 2 DKTVRLWHISRKE----CLCCF-QHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKV-----AVWNEVEGQTKLIT 71 (408)
Q Consensus 2 Dg~i~vwd~~~~~----~~~~~-~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~-----~~~~~~~~~~~~v~ 71 (408)
||.|+||++.... .+..+ +|.+.|++++|+|.++++|++|+.||.|++||+.++.. .....+.+|...|.
T Consensus 56 ~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~ 135 (402)
T 2aq5_A 56 GGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVG 135 (402)
T ss_dssp SCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEE
T ss_pred CCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEE
Confidence 7999999996642 23334 49999999999997788999999999999999988743 22367889999999
Q ss_pred EEEEecCC-CEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcc
Q psy988 72 AANFCENG-KFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLN 150 (408)
Q Consensus 72 ~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 150 (408)
+++|+|++ .+|++++.||.|++||+++++....+. ...|...|.+++|+|++++|++++.||.|++||+++++
T Consensus 136 ~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 209 (402)
T 2aq5_A 136 IVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLG------PDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGT 209 (402)
T ss_dssp EEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEEC------TTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE
T ss_pred EEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEe------cCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCc
Confidence 99999998 699999999999999999876543321 12456799999999999999999999999999999998
Q ss_pred cceee-cCccccccceEEEEecCCCEEEEe---ecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCC
Q psy988 151 LSCKY-KGYVNVSSQIKASFSHDGKYIVSG---SENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPC 226 (408)
Q Consensus 151 ~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 226 (408)
.+..+ ..+.. ..+..+.|+|++++|++| +.|+.|++||+++...... .....+..
T Consensus 210 ~~~~~~~~~~~-~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~----------~~~~~~~~---------- 268 (402)
T 2aq5_A 210 VVAEKDRPHEG-TRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLS----------LQELDTSS---------- 268 (402)
T ss_dssp EEEEEECSSCS-SSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSE----------EEECCCCS----------
T ss_pred eeeeeccCCCC-CcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCce----------EEeccCCC----------
Confidence 88877 45543 346789999999999999 7899999999975321100 00011223
Q ss_pred cceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEE-EecCCCeEEEEEcCCCee-eeEEeeccceeceeEEEEcC
Q psy988 227 PELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKIL-VTSNDSRIRLYDLRDLNL-SCKYKGYVNVSSQIKASFSH 304 (408)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~-~~~~~~~~~~~~v~~~~~s~ 304 (408)
.+.+++|+|++++|+ +++.|+.|++||+.+++. +..+..+.+...+.+++|+|
T Consensus 269 -------------------------~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp 323 (402)
T 2aq5_A 269 -------------------------GVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMP 323 (402)
T ss_dssp -------------------------SCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECC
T ss_pred -------------------------ceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEec
Confidence 344555555566665 566899999999998874 56666665556899999999
Q ss_pred CCCEEEEecCCceEEEeecccc
Q psy988 305 DGKYIVSGSENQCIYIWKTHHD 326 (408)
Q Consensus 305 ~~~~l~~~~~dg~i~iw~~~~~ 326 (408)
++.++++ .++.+++|++.++
T Consensus 324 ~~~~~~s--~~~~~~~~~l~~~ 343 (402)
T 2aq5_A 324 KRGLEVN--KCEIARFYKLHER 343 (402)
T ss_dssp GGGSCGG--GTEEEEEEEEETT
T ss_pred cccccee--cceeEEEEEcCCC
Confidence 9998875 4669999999875
No 99
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=3.3e-36 Score=264.49 Aligned_cols=300 Identities=16% Similarity=0.129 Sum_probs=232.9
Q ss_pred eEEEEeccCC--eeEeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeee---eecCCceeeEEEEEecC
Q psy988 4 TVRLWHISRK--ECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWN---EVEGQTKLITAANFCEN 78 (408)
Q Consensus 4 ~i~vwd~~~~--~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~---~~~~~~~~v~~~~~~~~ 78 (408)
.|.+||..++ +.+..+.+...+.+++|+| ++.++++++.++.|++||+.+++..... .+.+|...|.+++|+++
T Consensus 102 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~ 180 (433)
T 3bws_A 102 KLIALDKEGITHRFISRFKTGFQPKSVRFID-NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEH 180 (433)
T ss_dssp CEEECCBTTCSEEEEEEEECSSCBCCCEESS-SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGG
T ss_pred EEEEECCCCCcceEEEEEcCCCCceEEEEeC-CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCC
Confidence 4555555445 5666666667788999999 9999999999999999999988766311 34578899999999999
Q ss_pred CCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEee-CCCeEEEEEccCcccceeecC
Q psy988 79 GKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTS-NDSRIRLYDLRDLNLSCKYKG 157 (408)
Q Consensus 79 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~ 157 (408)
++++++++.|+.|++||+++.+...... .+...+.+++|+|+++.+++++ .++.|++||+++++....+..
T Consensus 181 ~~~~~s~~~d~~v~~~d~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~ 252 (433)
T 3bws_A 181 NELWVSQMQANAVHVFDLKTLAYKATVD--------LTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK 252 (433)
T ss_dssp TEEEEEEGGGTEEEEEETTTCCEEEEEE--------CSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC
T ss_pred CEEEEEECCCCEEEEEECCCceEEEEEc--------CCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC
Confidence 9999999999999999999876654433 3456899999999999886655 789999999999887776665
Q ss_pred ccccccceEEEEecCCCEEEEee--------cCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcce
Q psy988 158 YVNVSSQIKASFSHDGKYIVSGS--------ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPEL 229 (408)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~l~~~~--------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 229 (408)
+. .+.+++|+|+++++++++ .||.|++||+.++.... ...+...+.+
T Consensus 253 ~~---~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~-------------~~~~~~~~~~--------- 307 (433)
T 3bws_A 253 IG---LPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLID-------------TIGPPGNKRH--------- 307 (433)
T ss_dssp CS---EEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEE-------------EEEEEECEEE---------
T ss_pred CC---CceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEe-------------eccCCCCcce---------
Confidence 33 377899999999999888 48899999987543211 1112223344
Q ss_pred eeeecCCCCCCCceeeecCCCceeeeeccCCCCCe-EEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCE
Q psy988 230 IIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDK-ILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKY 308 (408)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 308 (408)
++|+|+++. +++++.++.|++||+.+++....+.. ...+.+++|+|+|++
T Consensus 308 --------------------------~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~ 358 (433)
T 3bws_A 308 --------------------------IVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPV---FDKPNTIALSPDGKY 358 (433)
T ss_dssp --------------------------EEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEEC---SSSEEEEEECTTSSE
T ss_pred --------------------------EEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecC---CCCCCeEEEcCCCCE
Confidence 445555543 45668999999999999988877753 235779999999999
Q ss_pred EEEecC---------------CceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCC
Q psy988 309 IVSGSE---------------NQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSE 373 (408)
Q Consensus 309 l~~~~~---------------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s 373 (408)
|++++. ||.|++||+.++ +.+..+.. ...+.+++|+|
T Consensus 359 l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~------------~~~~~~~~-~~~~~~~~~s~--------------- 410 (433)
T 3bws_A 359 LYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTD------------TVKEFWEA-GNQPTGLDVSP--------------- 410 (433)
T ss_dssp EEEEECCCCCTTTCTTSCCSSCCEEEEEETTTT------------EEEEEEEC-SSSEEEEEECT---------------
T ss_pred EEEEecCCCccccccccccccceEEEEEECCCC------------cEEEEecC-CCCCceEEEcC---------------
Confidence 988776 579999999876 44444544 45789999999
Q ss_pred CcccEEEEEec-CCeEEEEeCCC
Q psy988 374 STGYVLVSADF-NGVIRVFLNKT 395 (408)
Q Consensus 374 ~~~~~l~s~~~-dg~v~iw~~~~ 395 (408)
+|++|++++. |+.|++|++..
T Consensus 411 -dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 411 -DNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp -TSCEEEEEETTTTEEEEEEETT
T ss_pred -CCCEEEEEECCCCeEEEEEecC
Confidence 8999988775 99999999864
No 100
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=4.4e-37 Score=261.74 Aligned_cols=317 Identities=13% Similarity=0.110 Sum_probs=211.8
Q ss_pred EEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEE-EE
Q psy988 7 LWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFA-VV 84 (408)
Q Consensus 7 vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~ 84 (408)
||++.+.+++.... |.+.|++++|+| ++++|++|+.++ +++|++.+++... .... ..+..+++.++++.+ ++
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v~fs~-dg~~la~g~~~~-~~iw~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~ 76 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDYEFNQ-DQSCLILSTLKS-FEIYNVHPVAHIM--SQEM--RHLSKVRMLHRTNYVAFV 76 (355)
T ss_dssp ----------------CCCCCEEEECT-TSSEEEEECSSE-EEEEEETTEEEEE--EEEC--SCCCEEEECTTSSEEEEE
T ss_pred cccccccCCccccccCCCceEEEEECC-CCCEEEEEcCCE-EEEEecCCcceee--eeec--CCeEEEEEcCCCCEEEEE
Confidence 57777788876666 999999999999 999999998765 7899988765442 2221 247788888888877 56
Q ss_pred EecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCc-ccceeecCcccccc
Q psy988 85 GSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDL-NLSCKYKGYVNVSS 163 (408)
Q Consensus 85 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~ 163 (408)
++.|+.|++||..+++....+. +...|.++.++++. ++++ .++.|++||+.++ +.+..+.. .
T Consensus 77 ~~~d~~v~iWd~~~~~~~~~~~---------~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~---~-- 139 (355)
T 3vu4_A 77 TGVKEVVHIWDDVKKQDVSRIK---------VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR---F-- 139 (355)
T ss_dssp CSSTTEEEEEETTTTEEEEEEE---------CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE---E--
T ss_pred ECCccEEEEEECCCCcEEEEEE---------CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc---C--
Confidence 7788999999999987665443 23489999998753 4444 4789999999987 66655544 1
Q ss_pred ceEEEEecCCCEEEE--eecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCC
Q psy988 164 QIKASFSHDGKYIVS--GSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSES 241 (408)
Q Consensus 164 ~~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 241 (408)
...+++++ .++++ |+.+|.|++||+.++........ .... ....
T Consensus 140 ~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~---------------~~~~-----------------~~~~ 185 (355)
T 3vu4_A 140 GGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQ---------------GVQQ-----------------KAIL 185 (355)
T ss_dssp EEEEEEET--TEEEEEESSCTTCEEEEECCC-------------------------------------------------
T ss_pred CceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccc---------------cccc-----------------cccC
Confidence 22356666 56665 68899999999976421100000 0000 0001
Q ss_pred c-eeeecCCCceeeeeccCCCCCeEEEecCCCe-EEEEEcCCCeeeeEEe-e-ccceeceeEEEEcCCCCEEEEecCCce
Q psy988 242 T-GYVLNATGRKISGIEPMPGEDKILVTSNDSR-IRLYDLRDLNLSCKYK-G-YVNVSSQIKASFSHDGKYIVSGSENQC 317 (408)
Q Consensus 242 ~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~-i~i~d~~~~~~~~~~~-~-~~~~~~v~~~~~s~~~~~l~~~~~dg~ 317 (408)
. ...+..|...|.+++|+|++++|++++.|++ |++||+++++++..+. + |. ..|.+++|+|++++|++++.|+.
T Consensus 186 p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~--~~v~~~~~s~~~~~l~s~s~d~~ 263 (355)
T 3vu4_A 186 GKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDR--ADVVDMKWSTDGSKLAVVSDKWT 263 (355)
T ss_dssp -CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCC--SCEEEEEECTTSCEEEEEETTCE
T ss_pred cccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCC--CcEEEEEECCCCCEEEEEECCCE
Confidence 1 2344567777888888888889999999998 9999999999999988 3 44 48999999999999999999999
Q ss_pred EEEeeccccCccccc-ccc--------Ccccccee---eeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecC
Q psy988 318 IYIWKTHHDYAKFSS-VRR--------DRNDFWEG---IKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFN 385 (408)
Q Consensus 318 i~iw~~~~~~~~~~~-~~~--------~~~~~~~~---~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d 385 (408)
|++||+......... +.. ..+ .... ...+......++|++ +++.|++++.|
T Consensus 264 v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~----------------d~~~l~~~~~d 326 (355)
T 3vu4_A 264 LHVFEIFNDQDNKRHALKGWINMKYFQSEW-SLCNFKLSVDKHVRGCKIAWIS----------------ESSLVVVWPHT 326 (355)
T ss_dssp EEEEESSCCSCCCSEETTTTEECCCCCCSS-CSEEEECCCCTTCCCCEEEESS----------------SSEEEEEETTT
T ss_pred EEEEEccCCCCcccccccceeecccccccc-ceeEEEeccCCCCCceEEEEeC----------------CCCEEEEEeCC
Confidence 999999765321100 000 000 0000 011122346789999 99999999999
Q ss_pred CeEEEEeCCCCCCc
Q psy988 386 GVIRVFLNKTKPKH 399 (408)
Q Consensus 386 g~v~iw~~~~~~~~ 399 (408)
|.+++|++..++..
T Consensus 327 g~~~~~~~~~~~~~ 340 (355)
T 3vu4_A 327 RMIETFKVVFDDEM 340 (355)
T ss_dssp TEEEEEEEEEETTT
T ss_pred CeEEEEEEEcCCCC
Confidence 99999998776543
No 101
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-37 Score=267.14 Aligned_cols=271 Identities=13% Similarity=0.100 Sum_probs=207.3
Q ss_pred eeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCC--CCeEEEeeCC
Q psy988 61 NEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPG--EDKILVTSND 138 (408)
Q Consensus 61 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d 138 (408)
..+.+|...|++++|+|++++|++++.||.|++|++.......... ...|...|.+++|+++ +++|++++.|
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~------~~~h~~~v~~~~~~~~~~~~~l~s~~~d 78 (379)
T 3jrp_A 5 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDT------LTGHEGPVWRVDWAHPKFGTILASCSYD 78 (379)
T ss_dssp CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEE------ECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred EEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeE------ecCCCCcEEEEEeCCCCCCCEEEEeccC
Confidence 5788999999999999999999999999999999998543222111 2346679999999987 8999999999
Q ss_pred CeEEEEEccCcc--cceeecCccccccceEEEEecC--CCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccc
Q psy988 139 SRIRLYDLRDLN--LSCKYKGYVNVSSQIKASFSHD--GKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAH 214 (408)
Q Consensus 139 g~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (408)
|.|++||+++++ ....+..+. ..+.+++|+|+ +++|++++.|+.|++||+...... ....+..|
T Consensus 79 g~v~iwd~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~----------~~~~~~~~ 146 (379)
T 3jrp_A 79 GKVLIWKEENGRWSQIAVHAVHS--ASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT----------SPIIIDAH 146 (379)
T ss_dssp SCEEEEEEETTEEEEEEEECCCS--SCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCC----------CEEEEECC
T ss_pred CEEEEEEcCCCceeEeeeecCCC--cceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCce----------eeEEecCC
Confidence 999999999887 455555544 44889999999 999999999999999999754211 11234456
Q ss_pred cceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCe----eeeEEee
Q psy988 215 NAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLN----LSCKYKG 290 (408)
Q Consensus 215 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~----~~~~~~~ 290 (408)
...+.+++|+|...... ......+++.+|++++.|+.|++||+++++ ....+.+
T Consensus 147 ~~~v~~~~~~~~~~~~~----------------------~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 204 (379)
T 3jrp_A 147 AIGVNSASWAPATIEED----------------------GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG 204 (379)
T ss_dssp TTCEEEEEECCCC--------------------------------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECC
T ss_pred CCceEEEEEcCcccccc----------------------ccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEec
Confidence 66677777766432110 011114478899999999999999998764 3344555
Q ss_pred ccceeceeEEEEcCC---CCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhcc
Q psy988 291 YVNVSSQIKASFSHD---GKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQM 367 (408)
Q Consensus 291 ~~~~~~v~~~~~s~~---~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~ 367 (408)
|.. .+.+++|+|+ +++|++++.||.|++||+..+.... ...+.....|...|.+++|+|
T Consensus 205 h~~--~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-------~~~~~~~~~~~~~v~~~~~s~--------- 266 (379)
T 3jrp_A 205 HSD--WVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPW-------KKTLLKEEKFPDVLWRASWSL--------- 266 (379)
T ss_dssp CSS--CEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCC-------EEEESSSSCCSSCEEEEEECS---------
T ss_pred ccC--cEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccc-------eeeeeccccCCCcEEEEEEcC---------
Confidence 544 8899999999 8999999999999999998753211 012233345889999999999
Q ss_pred CCCCCCCcccEEEEEecCCeEEEEeCCCC
Q psy988 368 EPDKSESTGYVLVSADFNGVIRVFLNKTK 396 (408)
Q Consensus 368 ~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 396 (408)
++++|++++.||.|++|++...
T Consensus 267 -------~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 267 -------SGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp -------SSCCEEEEESSSSEEEEEEEET
T ss_pred -------CCCEEEEecCCCcEEEEeCCCC
Confidence 9999999999999999999853
No 102
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-36 Score=252.30 Aligned_cols=258 Identities=17% Similarity=0.266 Sum_probs=207.4
Q ss_pred CCceEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCC-ceeeeeecCCceeeEEEEEecC
Q psy988 1 MDKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKK-VAVWNEVEGQTKLITAANFCEN 78 (408)
Q Consensus 1 ~Dg~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~-~~~~~~~~~~~~~v~~~~~~~~ 78 (408)
.||.|++||+.+++....+. |...|.+++|+| ++++|++++.||.|++|++.... ......+.+|...|.++.| +
T Consensus 37 ~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~ 113 (313)
T 3odt_A 37 RDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDS-EKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--Q 113 (313)
T ss_dssp TTSEEEEEEESSSEEEEEEEECSSCEEEEEEET-TTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--E
T ss_pred cCCcEEEEECCCCEEEEEeecCCccEEEEEECC-CCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--c
Confidence 38999999999999888776 999999999999 99999999999999999987653 1223577899999999999 6
Q ss_pred CCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCC-CCCeEEEeeCCCeEEEEEccCcccceeecC
Q psy988 79 GKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMP-GEDKILVTSNDSRIRLYDLRDLNLSCKYKG 157 (408)
Q Consensus 79 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 157 (408)
++++++++.||.|++|| ..+..... ..|...+.++.|.| +++.+++++.||.|++||. .+....+..
T Consensus 114 ~~~l~~~~~d~~i~~~d--~~~~~~~~--------~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~--~~~~~~~~~ 181 (313)
T 3odt_A 114 DGVVISGSWDKTAKVWK--EGSLVYNL--------QAHNASVWDAKVVSFSENKFLTASADKTIKLWQN--DKVIKTFSG 181 (313)
T ss_dssp TTEEEEEETTSEEEEEE--TTEEEEEE--------ECCSSCEEEEEEEETTTTEEEEEETTSCEEEEET--TEEEEEECS
T ss_pred CCEEEEEeCCCCEEEEc--CCcEEEec--------ccCCCceeEEEEccCCCCEEEEEECCCCEEEEec--CceEEEEec
Confidence 78999999999999999 33322222 23557899999988 8999999999999999994 344455554
Q ss_pred ccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCC
Q psy988 158 YVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPD 237 (408)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 237 (408)
. ....+.+++|+|++. +++++.||.|++||++++. .+..+..|...
T Consensus 182 ~-~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~------------~~~~~~~~~~~-------------------- 227 (313)
T 3odt_A 182 I-HNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGD------------VLRTYEGHESF-------------------- 227 (313)
T ss_dssp S-CSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCC------------EEEEEECCSSC--------------------
T ss_pred c-CcccEEEEEEcCCCe-EEEccCCCeEEEEECCchh------------hhhhhhcCCce--------------------
Confidence 1 224488899999998 9999999999999996532 22333344444
Q ss_pred CCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCce
Q psy988 238 KSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQC 317 (408)
Q Consensus 238 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 317 (408)
|.+++|+|++ .|++++.||.|++||+++++....+..+.. .+.+++|+|+++ +++++.||.
T Consensus 228 ---------------i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~--~i~~~~~~~~~~-~~~~~~dg~ 288 (313)
T 3odt_A 228 ---------------VYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAI--SIWSVDCMSNGD-IIVGSSDNL 288 (313)
T ss_dssp ---------------EEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSS--CEEEEEECTTSC-EEEEETTSC
T ss_pred ---------------EEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCc--eEEEEEEccCCC-EEEEeCCCc
Confidence 4455555555 478899999999999999999999887755 789999999998 556889999
Q ss_pred EEEeecccc
Q psy988 318 IYIWKTHHD 326 (408)
Q Consensus 318 i~iw~~~~~ 326 (408)
|++|++.++
T Consensus 289 i~iw~~~~~ 297 (313)
T 3odt_A 289 VRIFSQEKS 297 (313)
T ss_dssp EEEEESCGG
T ss_pred EEEEeCCCC
Confidence 999999876
No 103
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.3e-36 Score=263.95 Aligned_cols=290 Identities=10% Similarity=0.067 Sum_probs=220.4
Q ss_pred CCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCC---ceeeeeec----------------------------------
Q psy988 22 IDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKK---VAVWNEVE---------------------------------- 64 (408)
Q Consensus 22 ~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~---~~~~~~~~---------------------------------- 64 (408)
..++.+++|+| +|++|+++ .++.|++||+.+++ .. ..+.
T Consensus 4 ~~p~~~v~~s~-dg~~l~~~-~~~~i~v~d~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (450)
T 2vdu_B 4 IHPLQNLLTSR-DGSLVFAI-IKNCILSFKYQSPNHWEFA--GKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSN 79 (450)
T ss_dssp ECCCCEEEECS-SSSEEEEE-ETTEEEEEEEETTTEEEEE--EEEECCC-------------------------------
T ss_pred cccEEEEEecC-CCCEEEEE-eCCeEEEEECCCCCcceee--eecCCccccccccccccchhhccccccccccccccccC
Confidence 45789999999 88866665 57899999998887 32 1222
Q ss_pred --------------------CCceeeEEEEEecCCCEE-EEEecCCEEEEEecc--CCeeeEEEEEeeccccccCCCCeE
Q psy988 65 --------------------GQTKLITAANFCENGKFA-VVGSYDGRCIFYTTD--QLKYHTQIHVRSTRGKNATGRKIS 121 (408)
Q Consensus 65 --------------------~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~v~ 121 (408)
+|...|.+++|+|++++| ++++.||.|++||+. +++....+... .+...|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~------~~~~~v~ 153 (450)
T 2vdu_B 80 KGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRF------CFSKRPN 153 (450)
T ss_dssp --------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEE------ECSSCEE
T ss_pred cCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecc------cCCCCce
Confidence 344479999999999996 889999999999998 66655444321 2346899
Q ss_pred EEeeCCCCCeEEEeeCCCeEEEEEccCcccce----eecCccccccceEEEEecC---CCEEEEeecCceEEEeeeccce
Q psy988 122 GIEPMPGEDKILVTSNDSRIRLYDLRDLNLSC----KYKGYVNVSSQIKASFSHD---GKYIVSGSENQCIYIWKTHHDY 194 (408)
Q Consensus 122 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~----~~~~~~~~~~~~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~ 194 (408)
+++|+|++++|++++.+|.|++|++.+++... .+.+|. ..+.+++|+|+ +++|++++.|+.|++||+.++.
T Consensus 154 ~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~ 231 (450)
T 2vdu_B 154 AISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHV--SMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCF 231 (450)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECS--SCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTT
T ss_pred EEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeeccc--CceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCc
Confidence 99999999999999999999999998877554 455544 45889999999 9999999999999999986532
Q ss_pred eeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeE
Q psy988 195 AKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRI 274 (408)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i 274 (408)
.. ..+ ...|...|.+++|+ ++++|++++.|+.|
T Consensus 232 ~~------------~~~----------------------------------~~~h~~~v~~~~~s-d~~~l~s~~~d~~v 264 (450)
T 2vdu_B 232 IV------------DKW----------------------------------LFGHKHFVSSICCG-KDYLLLSAGGDDKI 264 (450)
T ss_dssp CE------------EEE----------------------------------CCCCSSCEEEEEEC-STTEEEEEESSSEE
T ss_pred ee------------eee----------------------------------ecCCCCceEEEEEC-CCCEEEEEeCCCeE
Confidence 11 110 11344556666667 77788999999999
Q ss_pred EEEEcCCCeeeeEEeec-----------------------cceeceeEEEEcCCCCEEEEec-CCceEEEeec--cccCc
Q psy988 275 RLYDLRDLNLSCKYKGY-----------------------VNVSSQIKASFSHDGKYIVSGS-ENQCIYIWKT--HHDYA 328 (408)
Q Consensus 275 ~i~d~~~~~~~~~~~~~-----------------------~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~--~~~~~ 328 (408)
++||+.+++++..+..+ .....+.+++|+|++++|++++ .|+.|++|++ ..+.
T Consensus 265 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~- 343 (450)
T 2vdu_B 265 FAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKG- 343 (450)
T ss_dssp EEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTT-
T ss_pred EEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCC-
Confidence 99999999988887643 1234678999999999999988 8999999999 3321
Q ss_pred cccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEec------CCeEEEEeCCCC
Q psy988 329 KFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADF------NGVIRVFLNKTK 396 (408)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~------dg~v~iw~~~~~ 396 (408)
....+..+..| ..|.+++|+| ++.+++.++. +..|++|.+...
T Consensus 344 --------~l~~~~~~~~~-~~v~~~~~~~----------------~~~~v~~~~~~~~~~~~~~i~v~~~~~~ 392 (450)
T 2vdu_B 344 --------DLALKQIITFP-YNVISLSAHN----------------DEFQVTLDNKESSGVQKNFAKFIEYNLN 392 (450)
T ss_dssp --------CEEEEEEEECS-SCEEEEEEET----------------TEEEEEECCTTCCSSCCCSEEEEEEETT
T ss_pred --------ceeeccEeccC-CceEEEEecC----------------CcEEEEEecccCCCCCCcceEEEEEEcC
Confidence 01345566677 8899999999 6544444443 556888887544
No 104
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=2.8e-35 Score=255.10 Aligned_cols=318 Identities=11% Similarity=0.074 Sum_probs=233.2
Q ss_pred CceEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEE-EEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCC
Q psy988 2 DKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYF-LSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGK 80 (408)
Q Consensus 2 Dg~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l-~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 80 (408)
|+.|++||+.+++++..+.+...+.+++|+| ++++| ++++.|+.|++||+.+++.. ..+..+. .+.+++|+|+++
T Consensus 11 d~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~d~~i~v~d~~~~~~~--~~~~~~~-~v~~~~~spdg~ 86 (391)
T 1l0q_A 11 SDNISVIDVTSNKVTATIPVGSNPMGAVISP-DGTKVYVANAHSNDVSIIDTATNNVI--ATVPAGS-SPQGVAVSPDGK 86 (391)
T ss_dssp TTEEEEEETTTTEEEEEEECSSSEEEEEECT-TSSEEEEEEGGGTEEEEEETTTTEEE--EEEECSS-SEEEEEECTTSS
T ss_pred CCEEEEEECCCCeEEEEeecCCCcceEEECC-CCCEEEEECCCCCeEEEEECCCCeEE--EEEECCC-CccceEECCCCC
Confidence 7999999999999999998767799999999 88876 67778999999999988766 4555444 899999999999
Q ss_pred EEEEEe-cCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeE-EEeeCCCeEEEEEccCcccceeecCc
Q psy988 81 FAVVGS-YDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKI-LVTSNDSRIRLYDLRDLNLSCKYKGY 158 (408)
Q Consensus 81 ~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~ 158 (408)
+|++++ .++.|++||+.+++...... +...+.+++|+|+++.+ ++++.++.|++||+++++....+..+
T Consensus 87 ~l~~~~~~~~~v~v~d~~~~~~~~~~~---------~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~ 157 (391)
T 1l0q_A 87 QVYVTNMASSTLSVIDTTSNTVAGTVK---------TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG 157 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEE---------CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC
T ss_pred EEEEEECCCCEEEEEECCCCeEEEEEe---------CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC
Confidence 886554 66999999999887654433 12368999999999988 56777999999999998887777654
Q ss_pred cccccceEEEEecCCCEE-EEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCC
Q psy988 159 VNVSSQIKASFSHDGKYI-VSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPD 237 (408)
Q Consensus 159 ~~~~~~~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 237 (408)
.. +..++|+|+++++ ++++.++.|++||++++..... +
T Consensus 158 ~~---~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~------------~-------------------------- 196 (391)
T 1l0q_A 158 RS---PKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDT------------V-------------------------- 196 (391)
T ss_dssp SS---EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE------------E--------------------------
T ss_pred CC---cceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEE------------E--------------------------
Confidence 33 5689999999987 5677889999999875422110 0
Q ss_pred CCCCceeeecCCCceeeeeccCCCCCeEEEec---CCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEE-EEec
Q psy988 238 KSESTGYVLNATGRKISGIEPMPGEDKILVTS---NDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYI-VSGS 313 (408)
Q Consensus 238 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~ 313 (408)
.+...+.+++|+|+++++++++ .++.|++||+.+++.+..+..+. .+.+++|+|++++| ++++
T Consensus 197 ----------~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~s~~ 263 (391)
T 1l0q_A 197 ----------KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP---DPAGIAVTPDGKKVYVALS 263 (391)
T ss_dssp ----------ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEEET
T ss_pred ----------ecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC---CccEEEEccCCCEEEEEcC
Confidence 1122345566666677677776 68999999999999888877643 46789999999988 5778
Q ss_pred CCceEEEeeccccCccccccccCccccceeeeeeccceE---EEEecCCchhhhhccCCC----CCCC--cccEEEEEec
Q psy988 314 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVT---CAVFAPCPELIIAQMEPD----KSES--TGYVLVSADF 384 (408)
Q Consensus 314 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~---~~~~~~~~~~~~~~~~~~----~~s~--~~~~l~s~~~ 384 (408)
.|+.|++||+.++ +.+..+..|..+.. .+.+.|++..+..+.-.. ...+ +...+...+.
T Consensus 264 ~d~~v~v~d~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~ 331 (391)
T 1l0q_A 264 FXNTVSVIDTATN------------TITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSK 331 (391)
T ss_dssp TTTEEEEEETTTT------------EEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCB
T ss_pred CCCEEEEEECCCC------------cEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCC
Confidence 8999999999886 34444444443321 244444332221100000 0000 1145677778
Q ss_pred CCeEEEEeCCCCCC
Q psy988 385 NGVIRVFLNKTKPK 398 (408)
Q Consensus 385 dg~v~iw~~~~~~~ 398 (408)
|..+++|++..+..
T Consensus 332 ~~~~~~W~~~~g~~ 345 (391)
T 1l0q_A 332 DATEWKWDFGDGSS 345 (391)
T ss_dssp SCSEEEEECSSSCE
T ss_pred CceEEEEECCCCcc
Confidence 99999999987653
No 105
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.7e-38 Score=270.60 Aligned_cols=215 Identities=13% Similarity=0.062 Sum_probs=162.5
Q ss_pred CceEEEEeccCC--eeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCC-ceeeeeecCCceeeEEEEEec
Q psy988 2 DKTVRLWHISRK--ECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKK-VAVWNEVEGQTKLITAANFCE 77 (408)
Q Consensus 2 Dg~i~vwd~~~~--~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~-~~~~~~~~~~~~~v~~~~~~~ 77 (408)
||.|+|||+.++ +++..+. |.+.|.+++|+| ++++|++++.|+.|++||+.+++ ......+..|...|.+++|+|
T Consensus 32 d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 110 (377)
T 3dwl_C 32 TNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAP-KSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSP 110 (377)
T ss_dssp SSCBCEEEEETTEEEECCCBCCCSSCEEEEEECT-TTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCT
T ss_pred CCEEEEEEccCCceEEEEEEecCCceEEEEEEeC-CCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECC
Confidence 899999999998 6777776 999999999999 89999999999999999999877 333367788999999999999
Q ss_pred CCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccC---------
Q psy988 78 NGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRD--------- 148 (408)
Q Consensus 78 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~--------- 148 (408)
++++|++++.|+.|++||+++.+...... .. ...|...|.+++|+|++++|++++.|+.|++||++.
T Consensus 111 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~--~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 186 (377)
T 3dwl_C 111 NEDKFAVGSGARVISVCYFEQENDWWVSK--HL--KRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEA 186 (377)
T ss_dssp TSSCCEEEESSSCEEECCC-----CCCCE--EE--CSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCS
T ss_pred CCCEEEEEecCCeEEEEEECCcccceeee--Ee--ecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccc
Confidence 99999999999999999998765311000 11 112667999999999999999999999999999953
Q ss_pred ---------cccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEE
Q psy988 149 ---------LNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVT 219 (408)
Q Consensus 149 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 219 (408)
+++...+ .| ...+.+++|+|++++|++++.||.|++||+.++.... ..+..+..|...+.
T Consensus 187 ~~~~~~~~~~~~~~~~-~~--~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~--------~~~~~~~~~~~~v~ 255 (377)
T 3dwl_C 187 SVWGSRLPFNTVCAEY-PS--GGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPP--------RALITVKLSQLPLR 255 (377)
T ss_dssp CSSCSCCCEEEEEECC-CC--SSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCE--------EECCCEECSSSCEE
T ss_pred cccccccchhhhhhcc-cC--CceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcc--------eeeEeecCCCCceE
Confidence 3334444 33 3458899999999999999999999999997643210 11355667777778
Q ss_pred EEEEeCCcceeee
Q psy988 220 CAVFAPCPELIIA 232 (408)
Q Consensus 220 ~~~~~~~~~~~~~ 232 (408)
+++|+|+++++++
T Consensus 256 ~~~~s~~~~~l~~ 268 (377)
T 3dwl_C 256 SLLWANESAIVAA 268 (377)
T ss_dssp EEEEEETTEEEEE
T ss_pred EEEEcCCCCEEEE
Confidence 8888777766544
No 106
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=6.5e-36 Score=261.58 Aligned_cols=311 Identities=14% Similarity=0.193 Sum_probs=222.3
Q ss_pred eCCceEEEEEcCCCC----------CEEEEEeC----CCcEEEEecC--------------------------CCCceee
Q psy988 21 HIDFVTAICFHPRDD----------RYFLSGSL----DGKLRLWNIP--------------------------DKKVAVW 60 (408)
Q Consensus 21 h~~~v~~~~~sp~~~----------~~l~t~~~----dg~i~iw~~~--------------------------~~~~~~~ 60 (408)
-.-+..++.|.| +. .+++.|+. ...|.++++. +++. ..
T Consensus 44 l~wp~l~~~~~p-~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~ 121 (430)
T 2xyi_A 44 LEWPSLTAQWLP-DVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKI-EI 121 (430)
T ss_dssp CSSCCSCEEECS-CCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC--------------------------CE-EE
T ss_pred CCCCceEEEECc-ccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCccccccccccccccccccccCCCCce-EE
Confidence 446778899999 43 46777765 3457777543 1111 12
Q ss_pred eeecCCceeeEEEEEecC-CCEEEEEecCCEEEEEeccCCeeeEE--EEEeeccccccCCCCeEEEeeCCCCC-eEEEee
Q psy988 61 NEVEGQTKLITAANFCEN-GKFAVVGSYDGRCIFYTTDQLKYHTQ--IHVRSTRGKNATGRKISGIEPMPGED-KILVTS 136 (408)
Q Consensus 61 ~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~ 136 (408)
.....|.+.|++++|+|+ +.+|++++.+|.|++|++........ ...........|...+.+++|+|++. +|++++
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 455678999999999997 78999999999999999986210000 00001111225667899999999988 999999
Q ss_pred CCCeEEEEEccCccc-------ceeecCccccccceEEEEec-CCCEEEEeecCceEEEeeeccceeeeeecccCCCccc
Q psy988 137 NDSRIRLYDLRDLNL-------SCKYKGYVNVSSQIKASFSH-DGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFW 208 (408)
Q Consensus 137 ~dg~i~i~d~~~~~~-------~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 208 (408)
.||.|++||+.++.. ...+..|. ..+.+++|+| ++.+|++++.||.|++||+++... ....
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~--~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~---------~~~~ 270 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHT--AVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT---------SKPS 270 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCS--SCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS---------SSCS
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCC--CCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC---------Ccce
Confidence 999999999987432 23344443 4488999999 678899999999999999975310 1122
Q ss_pred cccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCC-CeeeeE
Q psy988 209 EGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRD-LNLSCK 287 (408)
Q Consensus 209 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~ 287 (408)
..+..|...+.+++|+|++.. ++++++.||.|++||+++ ...+..
T Consensus 271 ~~~~~~~~~v~~i~~~p~~~~----------------------------------~l~tg~~dg~v~vwd~~~~~~~~~~ 316 (430)
T 2xyi_A 271 HTVDAHTAEVNCLSFNPYSEF----------------------------------ILATGSADKTVALWDLRNLKLKLHS 316 (430)
T ss_dssp EEEECCSSCEEEEEECSSCTT----------------------------------EEEEEETTSEEEEEETTCTTSCSEE
T ss_pred eEeecCCCCeEEEEeCCCCCC----------------------------------EEEEEeCCCeEEEEeCCCCCCCeEE
Confidence 233344555555555554332 478899999999999998 566777
Q ss_pred EeeccceeceeEEEEcCCCC-EEEEecCCceEEEeeccccCcccccc--ccCccccceeeeeeccceEEEEecCCchhhh
Q psy988 288 YKGYVNVSSQIKASFSHDGK-YIVSGSENQCIYIWKTHHDYAKFSSV--RRDRNDFWEGIKAHNAVVTCAVFAPCPELII 364 (408)
Q Consensus 288 ~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~--~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 364 (408)
+..|.. .+.+++|+|+++ +|++++.||.|++||+.......... ......++..+.+|...|++++|+|
T Consensus 317 ~~~h~~--~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p------ 388 (430)
T 2xyi_A 317 FESHKD--EIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP------ 388 (430)
T ss_dssp EECCSS--CEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECS------
T ss_pred eecCCC--CEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECC------
Confidence 777655 889999999995 68999999999999998732111000 0011245666778999999999999
Q ss_pred hccCCCCCCCccc-EEEEEecCCeEEEEeCCCC
Q psy988 365 AQMEPDKSESTGY-VLVSADFNGVIRVFLNKTK 396 (408)
Q Consensus 365 ~~~~~~~~s~~~~-~l~s~~~dg~v~iw~~~~~ 396 (408)
++. +|++++.||.|++|++...
T Consensus 389 ----------~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 389 ----------NEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp ----------SSTTEEEEEETTSEEEEEEECHH
T ss_pred ----------CCCCEEEEEECCCCEEEeEcccc
Confidence 787 9999999999999998753
No 107
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=6.4e-36 Score=263.85 Aligned_cols=287 Identities=16% Similarity=0.202 Sum_probs=206.7
Q ss_pred CCceEEEEeccCCe-----------eEeEEE-eC------------CceEEEEEcCCCC--CEEEEEeCCCcEEEEecCC
Q psy988 1 MDKTVRLWHISRKE-----------CLCCFQ-HI------------DFVTAICFHPRDD--RYFLSGSLDGKLRLWNIPD 54 (408)
Q Consensus 1 ~Dg~i~vwd~~~~~-----------~~~~~~-h~------------~~v~~~~~sp~~~--~~l~t~~~dg~i~iw~~~~ 54 (408)
.||.|+|||+.+++ +...+. |. +.|++++|+| ++ .+|++++.|+.|++|++.+
T Consensus 48 ~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~-~~~~~~l~s~s~d~~i~iw~~~~ 126 (447)
T 3dw8_B 48 KGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLP-QKNAAQFLLSTNDKTIKLWKISE 126 (447)
T ss_dssp TTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECC-CCSSSEEEEEECSSCEEEEEEEE
T ss_pred CCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcC-CCCcceEEEeCCCCeEEEEeccc
Confidence 38999999999877 455665 88 8899999999 76 7999999999999999876
Q ss_pred CCcee-------------------------------------e-eeecCCceeeEEEEEecCCCEEEEEecCCEEEEEec
Q psy988 55 KKVAV-------------------------------------W-NEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTT 96 (408)
Q Consensus 55 ~~~~~-------------------------------------~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~ 96 (408)
+.... . ....+|...|.+++|+|++++|+++ .|+.|++||+
T Consensus 127 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~ 205 (447)
T 3dw8_B 127 RDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHL 205 (447)
T ss_dssp EEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEET
T ss_pred ccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEEC
Confidence 43210 0 1146799999999999999999998 7999999999
Q ss_pred cCCeeeEEEEEeeccccccCCCCeEEEeeCCCC-CeEEEeeCCCeEEEEEccCccc----ceeecCcccc----------
Q psy988 97 DQLKYHTQIHVRSTRGKNATGRKISGIEPMPGE-DKILVTSNDSRIRLYDLRDLNL----SCKYKGYVNV---------- 161 (408)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~---------- 161 (408)
+..................|...|.+++|+|++ +.|++++.||.|++||+++++. ...+..+...
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (447)
T 3dw8_B 206 EITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEII 285 (447)
T ss_dssp TEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHT
T ss_pred CCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccC
Confidence 854322221111122345677899999999998 8999999999999999998886 5666665431
Q ss_pred ccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCC
Q psy988 162 SSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSES 241 (408)
Q Consensus 162 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 241 (408)
..+.+++|+|++++|++++. +.|++||++... ..+..+..|...+..+..
T Consensus 286 ~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~-----------~~~~~~~~~~~~~~~l~~------------------ 335 (447)
T 3dw8_B 286 SSISDVKFSHSGRYMMTRDY-LSVKVWDLNMEN-----------RPVETYQVHEYLRSKLCS------------------ 335 (447)
T ss_dssp TCEEEEEECTTSSEEEEEES-SEEEEEETTCCS-----------SCSCCEESCGGGTTTHHH------------------
T ss_pred ceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCc-----------cccceeeccccccccccc------------------
Confidence 25889999999999999998 999999996421 122222222211000000
Q ss_pred ceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeec------------------------------
Q psy988 242 TGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGY------------------------------ 291 (408)
Q Consensus 242 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~------------------------------ 291 (408)
......-..+..++|+|++++|++++.||.|++||+.+++.+. +..+
T Consensus 336 --~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (447)
T 3dw8_B 336 --LYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRKKDEISVDS 412 (447)
T ss_dssp --HHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGG
T ss_pred --cccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eeecccccccccccCCccccccCCcccccccccc
Confidence 0000000113347888999999999999999999999887653 2222
Q ss_pred -cceeceeEEEEcCCCCEEEEecCCceEEEeec
Q psy988 292 -VNVSSQIKASFSHDGKYIVSGSENQCIYIWKT 323 (408)
Q Consensus 292 -~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 323 (408)
.....+..++|+|++++||+++.++ +++|..
T Consensus 413 ~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 413 LDFNKKILHTAWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp CCTTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred cccCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence 1123577899999999999998775 778764
No 108
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.4e-37 Score=285.49 Aligned_cols=257 Identities=12% Similarity=0.245 Sum_probs=202.1
Q ss_pred EeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecC--CCEEEEEecCCEEEEEecc
Q psy988 20 QHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCEN--GKFAVVGSYDGRCIFYTTD 97 (408)
Q Consensus 20 ~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iw~~~ 97 (408)
+|.+.|++++|+| ++++|++|+.||.|++||+.++.......+.+|...|.+++|+|+ +++|++++.||.|++||+.
T Consensus 7 gH~~~V~~l~~s~-dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~ 85 (753)
T 3jro_A 7 AHNELIHDAVLDY-YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEE 85 (753)
T ss_dssp -CCCCEEEECCCS-SSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEE
T ss_pred cCcceeEEEEECC-CCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECC
Confidence 4999999999999 999999999999999999986655555788999999999999988 9999999999999999999
Q ss_pred CCeeeEEEEEeeccccccCCCCeEEEeeCCC--CCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEec----
Q psy988 98 QLKYHTQIHVRSTRGKNATGRKISGIEPMPG--EDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSH---- 171 (408)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~---- 171 (408)
+++...... ...|...|.+++|+|+ ++.+++++.||.|++||++++..........+...+.+++|+|
T Consensus 86 ~~~~~~~~~------~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~ 159 (753)
T 3jro_A 86 NGRWSQIAV------HAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE 159 (753)
T ss_dssp TTEEEEEEE------ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC--
T ss_pred CCccccccc------ccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccc
Confidence 875322221 2346679999999999 9999999999999999999875433333233345588999999
Q ss_pred ---------CCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCc
Q psy988 172 ---------DGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSEST 242 (408)
Q Consensus 172 ---------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 242 (408)
++++|++|+.||.|++||++++.... .....+.
T Consensus 160 ~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~--------~~~~~~~------------------------------ 201 (753)
T 3jro_A 160 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY--------VLESTLE------------------------------ 201 (753)
T ss_dssp -------CGGGCCEEEEETTSCEEEEEEETTTTEE--------EEEEEEC------------------------------
T ss_pred cccccccCCCCCEEEEEECCCeEEEEeccCCcccc--------eeeeeec------------------------------
Confidence 58999999999999999997532110 1112223
Q ss_pred eeeecCCCceeeeeccCCC---CCeEEEecCCCeEEEEEcCCCeeee---EEeeccceeceeEEEEcCCCCEEEEecCCc
Q psy988 243 GYVLNATGRKISGIEPMPG---EDKILVTSNDSRIRLYDLRDLNLSC---KYKGYVNVSSQIKASFSHDGKYIVSGSENQ 316 (408)
Q Consensus 243 ~~~~~~~~~~i~~~~~~~~---~~~l~~~~~d~~i~i~d~~~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 316 (408)
.|...|.+++|+|+ ++++++++.||.|++||+++++... ......+...+.+++|+|+|++|++|+.||
T Consensus 202 -----~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg 276 (753)
T 3jro_A 202 -----GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN 276 (753)
T ss_dssp -----CCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSS
T ss_pred -----CCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCC
Confidence 44455566666666 6778999999999999999864211 111222344788999999999999999999
Q ss_pred eEEEeecccc
Q psy988 317 CIYIWKTHHD 326 (408)
Q Consensus 317 ~i~iw~~~~~ 326 (408)
.|++|++..+
T Consensus 277 ~I~vwd~~~~ 286 (753)
T 3jro_A 277 KVTLWKENLE 286 (753)
T ss_dssp CEECCBCCSS
T ss_pred EEEEEecCCC
Confidence 9999999854
No 109
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.7e-37 Score=264.54 Aligned_cols=270 Identities=10% Similarity=0.059 Sum_probs=201.3
Q ss_pred eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCe
Q psy988 21 HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLK 100 (408)
Q Consensus 21 h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 100 (408)
....|.+++|+| ||+++||++.|++|+ |...++ .+.+|...|.+++|+|+| .++.+.+|+.+...
T Consensus 14 ~~~~v~sv~~Sp-DG~~iASas~D~TV~--d~~~~~-----~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~ 78 (588)
T 2j04_A 14 FEDWKNNLTWAR-DGTLYLTTFPDISIG--QPKYAK-----DINCNSKNLFHVKEFPLE-------FENKLDFELAQQNG 78 (588)
T ss_dssp CSSSSCCEEECT-TSCEEEECSSSEEEE--EECCCS-----CCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSSC
T ss_pred hhccEEEEEECC-CCCEEEEEcCCceee--cccccc-----eecCCCccEEEEEECCCC-------CcceEEEEeCCCce
Confidence 568999999999 999999999999999 644443 447999999999999999 45655565544222
Q ss_pred eeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccc---cccceEEEEecCCCEEE
Q psy988 101 YHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVN---VSSQIKASFSHDGKYIV 177 (408)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~ 177 (408)
.. . ..+...|.+++|+|+|..|++++.||.|++||.+. ++..+. +.. ...+.+++|+|||++|+
T Consensus 79 ~~------~----~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LA 145 (588)
T 2j04_A 79 LL------N----SQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIV 145 (588)
T ss_dssp SS------T----TSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEE
T ss_pred Ee------e----cCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEE
Confidence 10 0 12246899999999999999999999999999644 444444 332 23478999999999999
Q ss_pred EeecCceEEEeeeccceeeeeecccCCCcccccc----ccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCcee
Q psy988 178 SGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGI----KAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKI 253 (408)
Q Consensus 178 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 253 (408)
+|+.||+|++||+..+.... ..--.+..+ .+|...|.+++|+|
T Consensus 146 sgs~DGtVkIWd~~~~~l~~-----~~~i~l~ti~~~~~gh~~~V~sVawSP---------------------------- 192 (588)
T 2j04_A 146 VGNEDGELQFFSIRKNSENT-----PEFYFESSIRLSDAGSKDWVTHIVWYE---------------------------- 192 (588)
T ss_dssp EEETTSEEEEEECCCCTTTC-----CCCEEEEEEECSCTTCCCCEEEEEEET----------------------------
T ss_pred EEcCCCEEEEEECCCCcccc-----ccceeeeeeecccccccccEEEEEEcC----------------------------
Confidence 99999999999997532100 000001222 33444555555555
Q ss_pred eeeccCCCCCeEEEecCCCeEEEEEcCCCeee---eEEe-eccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCcc
Q psy988 254 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLS---CKYK-GYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAK 329 (408)
Q Consensus 254 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~---~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 329 (408)
+| +++++.|++|++||+.+++.. .++. +|. ..|.+++|+ |+.||+++ ++.|++||+.++
T Consensus 193 -------dg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~--~~V~svaFs--g~~LASa~-~~tIkLWd~~~~--- 255 (588)
T 2j04_A 193 -------DV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASR--RKITDLKIV--DYKVVLTC-PGYVHKIDLKNY--- 255 (588)
T ss_dssp -------TE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCS--SCCCCEEEE--TTEEEEEC-SSEEEEEETTTT---
T ss_pred -------Cc--EEEEeCCCeEEEEECCCCccccceeeeccccc--CcEEEEEEE--CCEEEEEe-CCeEEEEECCCC---
Confidence 55 567788999999999887742 4553 443 478899999 68999987 699999999875
Q ss_pred ccccccCccccceeeeeeccceEEEEe--cCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCC
Q psy988 330 FSSVRRDRNDFWEGIKAHNAVVTCAVF--APCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNK 394 (408)
Q Consensus 330 ~~~~~~~~~~~~~~~~~h~~~v~~~~~--~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~ 394 (408)
.......+|.+.|..++| +| ++..|++++.||+ ++|...
T Consensus 256 ---------~~~~~~~gh~~~V~~va~~~s~----------------d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 256 ---------SISSLKTGSLENFHIIPLNHEK----------------ESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp ---------EEEEEECSCCSCCCEEEETTCS----------------SCEEEEECSSCEE-EEEESS
T ss_pred ---------eEEEEEcCCCceEEEEEeeeCC----------------CCCEEEEEcCCCC-EEEeec
Confidence 232223389999999999 99 8999999999999 999976
No 110
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=7e-36 Score=262.14 Aligned_cols=254 Identities=20% Similarity=0.342 Sum_probs=207.5
Q ss_pred CceEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCC
Q psy988 2 DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGK 80 (408)
Q Consensus 2 Dg~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 80 (408)
||+|++||+.+++.+..+. |.+.|.+++| ++++|++|+.||.|++||+.+++.. ..+.+|...|.+++|+ +.
T Consensus 152 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~---~~~~l~sg~~dg~i~vwd~~~~~~~--~~~~~h~~~v~~l~~~--~~ 224 (435)
T 1p22_A 152 DNTIKIWDKNTLECKRILTGHTGSVLCLQY---DERVIITGSSDSTVRVWDVNTGEML--NTLIHHCEAVLHLRFN--NG 224 (435)
T ss_dssp SSCEEEEESSSCCEEEEECCCSSCEEEEEC---CSSEEEEEETTSCEEEEESSSCCEE--EEECCCCSCEEEEECC--TT
T ss_pred CCeEEEEeCCCCeEEEEEcCCCCcEEEEEE---CCCEEEEEcCCCeEEEEECCCCcEE--EEEcCCCCcEEEEEEc--CC
Confidence 8999999999999999887 9999999998 5679999999999999999998876 6888999999999996 45
Q ss_pred EEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccc
Q psy988 81 FAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVN 160 (408)
Q Consensus 81 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 160 (408)
++++++.||.|++||+.+......... ..+|...|.++.| +++++++++.||.|++||+++++.+..+..+..
T Consensus 225 ~l~s~s~dg~i~vwd~~~~~~~~~~~~-----~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 297 (435)
T 1p22_A 225 MMVTCSKDRSIAVWDMASPTDITLRRV-----LVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKR 297 (435)
T ss_dssp EEEEEETTSCEEEEECSSSSCCEEEEE-----ECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred EEEEeeCCCcEEEEeCCCCCCceeeeE-----ecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCC
Confidence 999999999999999988765432211 2356678999999 688999999999999999999999888887665
Q ss_pred cccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCC
Q psy988 161 VSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSE 240 (408)
Q Consensus 161 ~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 240 (408)
. +.++.+ +++++++|+.||.|++||++++. .+..+.+|...+.++
T Consensus 298 ~--v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~------------~~~~~~~h~~~v~~~------------------- 342 (435)
T 1p22_A 298 G--IACLQY--RDRLVVSGSSDNTIRLWDIECGA------------CLRVLEGHEELVRCI------------------- 342 (435)
T ss_dssp C--EEEEEE--ETTEEEEEETTSCEEEEETTTCC------------EEEEECCCSSCEEEE-------------------
T ss_pred c--EEEEEe--CCCEEEEEeCCCeEEEEECCCCC------------EEEEEeCCcCcEEEE-------------------
Confidence 4 666666 57899999999999999997542 223344444444444
Q ss_pred CceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCe---------eeeEEeeccceeceeEEEEcCCCCEEEE
Q psy988 241 STGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLN---------LSCKYKGYVNVSSQIKASFSHDGKYIVS 311 (408)
Q Consensus 241 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~---------~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 311 (408)
++ ++.+|++|+.||.|++||+.+++ .+..+.+|.. .|.+++| ++++|++
T Consensus 343 ----------------~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~--~~~~l~s 400 (435)
T 1p22_A 343 ----------------RF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSG--RVFRLQF--DEFQIVS 400 (435)
T ss_dssp ----------------EC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSS--CCCCEEE--CSSCEEE
T ss_pred ----------------Ee--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCC--CeEEEEe--CCCEEEE
Confidence 44 45678999999999999997765 6777777655 7888888 7889999
Q ss_pred ecCCceEEEeecccc
Q psy988 312 GSENQCIYIWKTHHD 326 (408)
Q Consensus 312 ~~~dg~i~iw~~~~~ 326 (408)
|+.||.|++||+.+.
T Consensus 401 ~s~Dg~i~iwd~~~~ 415 (435)
T 1p22_A 401 SSHDDTILIWDFLND 415 (435)
T ss_dssp CCSSSEEEEEC----
T ss_pred EeCCCEEEEEECCCC
Confidence 999999999999875
No 111
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=4.1e-36 Score=262.88 Aligned_cols=261 Identities=13% Similarity=0.178 Sum_probs=201.1
Q ss_pred EeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCC--------CCceeeeeecCCceeeEEEEEecCCC-EEEEEe
Q psy988 16 LCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPD--------KKVAVWNEVEGQTKLITAANFCENGK-FAVVGS 86 (408)
Q Consensus 16 ~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~ 86 (408)
...+.|.+.|++++|+|+++.+|++++.||.|++|++.. +.......+.+|...|.+++|+|++. +|++++
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 344569999999999994378999999999999999986 22333467889999999999999988 999999
Q ss_pred cCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCC-CCCeEEEeeCCCeEEEEEccCc---ccceeecCccccc
Q psy988 87 YDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMP-GEDKILVTSNDSRIRLYDLRDL---NLSCKYKGYVNVS 162 (408)
Q Consensus 87 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~ 162 (408)
.||.|++|++......... .........|...|.+++|+| ++..|++++.||.|++||++++ +....+..+. .
T Consensus 202 ~dg~i~vwd~~~~~~~~~~-~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~--~ 278 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRV-IDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHT--A 278 (430)
T ss_dssp TTSCEEEEETTSCCBGGGE-EECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCS--S
T ss_pred CCCeEEEEeCCCCCCCCce-eccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCC--C
Confidence 9999999999874321110 111112235677899999999 6778889999999999999987 4555555554 4
Q ss_pred cceEEEEecCCC-EEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCC
Q psy988 163 SQIKASFSHDGK-YIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSES 241 (408)
Q Consensus 163 ~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 241 (408)
.+.+++|+|++. .|++|+.||.|++||++... ..+..+..|...|.+++|+|+++.
T Consensus 279 ~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~-----------~~~~~~~~h~~~v~~i~~sp~~~~------------ 335 (430)
T 2xyi_A 279 EVNCLSFNPYSEFILATGSADKTVALWDLRNLK-----------LKLHSFESHKDEIFQVQWSPHNET------------ 335 (430)
T ss_dssp CEEEEEECSSCTTEEEEEETTSEEEEEETTCTT-----------SCSEEEECCSSCEEEEEECSSCTT------------
T ss_pred CeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC-----------CCeEEeecCCCCEEEEEECCCCCC------------
Confidence 488999999987 68899999999999997521 223344455555666655555433
Q ss_pred ceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCC--------------eeeeEEeeccceeceeEEEEcCCCC
Q psy988 242 TGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDL--------------NLSCKYKGYVNVSSQIKASFSHDGK 307 (408)
Q Consensus 242 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--------------~~~~~~~~~~~~~~v~~~~~s~~~~ 307 (408)
+|++++.|+.|++||+... +++..+.+|.. .+.+++|+|+++
T Consensus 336 ----------------------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~~p~~~ 391 (430)
T 2xyi_A 336 ----------------------ILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA--KISDFSWNPNEP 391 (430)
T ss_dssp ----------------------EEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSS--CEEEEEECSSST
T ss_pred ----------------------EEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCC--CceEEEECCCCC
Confidence 3788999999999999862 44444445443 789999999999
Q ss_pred -EEEEecCCceEEEeecccc
Q psy988 308 -YIVSGSENQCIYIWKTHHD 326 (408)
Q Consensus 308 -~l~~~~~dg~i~iw~~~~~ 326 (408)
+|++++.||.|++|++...
T Consensus 392 ~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 392 WIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp TEEEEEETTSEEEEEEECHH
T ss_pred CEEEEEECCCCEEEeEcccc
Confidence 8999999999999999764
No 112
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=2.9e-35 Score=250.32 Aligned_cols=280 Identities=9% Similarity=0.057 Sum_probs=210.7
Q ss_pred CCceEEEEeccCCe----eEeEEEeCCceEEEEEcCCCCC-EEEEEeCCCcEEEEec-CCCCceeeeeecC--CceeeEE
Q psy988 1 MDKTVRLWHISRKE----CLCCFQHIDFVTAICFHPRDDR-YFLSGSLDGKLRLWNI-PDKKVAVWNEVEG--QTKLITA 72 (408)
Q Consensus 1 ~Dg~i~vwd~~~~~----~~~~~~h~~~v~~~~~sp~~~~-~l~t~~~dg~i~iw~~-~~~~~~~~~~~~~--~~~~v~~ 72 (408)
.||.|+|||+.+++ ......|...|.+++|+| +++ +|++|+.||.|++||+ .+++. ..+.+ |...|.+
T Consensus 31 ~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~~wd~~~~~~~---~~~~~~~~~~~v~~ 106 (342)
T 1yfq_A 31 WDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID-NTDLQIYVGTVQGEILKVDLIGSPSF---QALTNNEANLGICR 106 (342)
T ss_dssp TTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEE-SSSEEEEEEETTSCEEEECSSSSSSE---EECBSCCCCSCEEE
T ss_pred CCCeEEEEEeCCCCccccceeeeecCCceEEEEECC-CCCcEEEEEcCCCeEEEEEeccCCce---EeccccCCCCceEE
Confidence 38999999999888 666667999999999999 899 9999999999999999 87765 46778 9999999
Q ss_pred EEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccC-ccc
Q psy988 73 ANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRD-LNL 151 (408)
Q Consensus 73 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~ 151 (408)
++|+| +++|++++.|+.|++||+++.................+...+.+++|+|++ +++++.++.|++||+++ +..
T Consensus 107 l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~ 183 (342)
T 1yfq_A 107 ICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDD 183 (342)
T ss_dssp EEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTC
T ss_pred EEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc--EEEEeCCCeEEEEECCccccc
Confidence 99999 999999999999999998751100000001111112256789999999877 99999999999999998 554
Q ss_pred ceeecCccccccceEEEEec-CCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCccee
Q psy988 152 SCKYKGYVNVSSQIKASFSH-DGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELI 230 (408)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 230 (408)
............+.+++|+| +++++++++.||.|++|+++..... ........+..|....
T Consensus 184 ~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~------~~~~~~~~~~~~~~~~------------ 245 (342)
T 1yfq_A 184 NGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDD------YNSSKRFAFRCHRLNL------------ 245 (342)
T ss_dssp CCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCS------TTCTTCEEEECCCCCT------------
T ss_pred cceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcc------cccccceeeecccccc------------
Confidence 32222222334588999999 9999999999999999998653000 0001111122221100
Q ss_pred eeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeec-cceeceeEEEEcCCCCEE
Q psy988 231 IAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGY-VNVSSQIKASFSHDGKYI 309 (408)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l 309 (408)
.-..+...|.+++|+|++++|++++.||.|++||+.+++.+..+..| .. .|.+++ |++++|
T Consensus 246 --------------~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~--~v~~~~--~~~~~l 307 (342)
T 1yfq_A 246 --------------KDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNED--SVVKIA--CSDNIL 307 (342)
T ss_dssp --------------TCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSS--EEEEEE--ECSSEE
T ss_pred --------------cccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCC--CceEec--CCCCeE
Confidence 00133457778888888888999999999999999999999888876 54 678888 999999
Q ss_pred EEecCCce-EEEeec
Q psy988 310 VSGSENQC-IYIWKT 323 (408)
Q Consensus 310 ~~~~~dg~-i~iw~~ 323 (408)
++++.||. .+.|..
T Consensus 308 ~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 308 CLATSDDTFKTNAAI 322 (342)
T ss_dssp EEEEECTHHHHCSSS
T ss_pred EEEecCCcccccccc
Confidence 99999998 555553
No 113
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-35 Score=276.60 Aligned_cols=272 Identities=13% Similarity=0.095 Sum_probs=207.2
Q ss_pred eeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCC--CCeEEEeeCC
Q psy988 61 NEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPG--EDKILVTSND 138 (408)
Q Consensus 61 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d 138 (408)
..+.+|.+.|++++|+|++++|++|+.||.|++||+.+........ ..+|...|.+++|+|+ +++|++++.|
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~------l~~h~~~V~~l~~s~~~~~~~l~s~s~D 76 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDT------LTGHEGPVWRVDWAHPKFGTILASCSYD 76 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEE------ECCCSSCEEEEEECCTTSCSEEEEEETT
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCcccee------ccCCcCceEEEEecCCCCCCEEEEEeCC
Confidence 4678999999999999999999999999999999998543222111 2356789999999988 8999999999
Q ss_pred CeEEEEEccCcc--cceeecCccccccceEEEEecC--CCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccc
Q psy988 139 SRIRLYDLRDLN--LSCKYKGYVNVSSQIKASFSHD--GKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAH 214 (408)
Q Consensus 139 g~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (408)
|.|++||+++++ ....+..|. ..+.+++|+|+ ++++++++.||.|++||++.+.. .....+..|
T Consensus 77 g~I~vwd~~~~~~~~~~~~~~h~--~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~----------~~~~~~~~~ 144 (753)
T 3jro_A 77 GKVLIWKEENGRWSQIAVHAVHS--ASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT----------TSPIIIDAH 144 (753)
T ss_dssp SCEEEEEEETTEEEEEEEECCCS--SCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSC----------CCCEEEECC
T ss_pred CeEEEEECCCCcccccccccCCC--CCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCC----------cceeEeecC
Confidence 999999999886 445555554 44889999999 99999999999999999976421 112234566
Q ss_pred cceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCC----eeeeEEee
Q psy988 215 NAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDL----NLSCKYKG 290 (408)
Q Consensus 215 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~----~~~~~~~~ 290 (408)
...|.++.|+|..... .......+++.++++++.||.|++||++++ .....+.+
T Consensus 145 ~~~v~~l~~~p~~~~~----------------------~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~ 202 (753)
T 3jro_A 145 AIGVNSASWAPATIEE----------------------DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG 202 (753)
T ss_dssp SSCEEEEEECCCC-------------------------------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECC
T ss_pred CCceEEEEecCccccc----------------------ccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecC
Confidence 6777777777642110 000111346788999999999999999877 44555666
Q ss_pred ccceeceeEEEEcCC---CCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhcc
Q psy988 291 YVNVSSQIKASFSHD---GKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQM 367 (408)
Q Consensus 291 ~~~~~~v~~~~~s~~---~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~ 367 (408)
|.. .|.+++|+|+ +++|++|+.||.|++||+.++.... .........|...|++++|+|
T Consensus 203 h~~--~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~-------~~~~~~~~~~~~~v~~l~~sp--------- 264 (753)
T 3jro_A 203 HSD--WVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPW-------KKTLLKEEKFPDVLWRASWSL--------- 264 (753)
T ss_dssp CSS--CEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCC-------BCCBSSSSCCSSCCCCEEECT---------
T ss_pred CCC--cEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcc-------eeEEeccCCCCCceEEEEEcC---------
Confidence 554 8999999999 8999999999999999998763211 123334456889999999999
Q ss_pred CCCCCCCcccEEEEEecCCeEEEEeCCCCC
Q psy988 368 EPDKSESTGYVLVSADFNGVIRVFLNKTKP 397 (408)
Q Consensus 368 ~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 397 (408)
+|++|++++.||.|++|++.+..
T Consensus 265 -------dg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 265 -------SGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp -------TTCCEEEECSSSCEECCBCCSSS
T ss_pred -------CCCEEEEEcCCCEEEEEecCCCC
Confidence 99999999999999999998644
No 114
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=4e-35 Score=253.23 Aligned_cols=284 Identities=11% Similarity=0.081 Sum_probs=194.8
Q ss_pred CceEEEEeccCC----------eeEeEEEeCCceEEEEEcC-------------------CCCCEEEEEeCCCcEEEEec
Q psy988 2 DKTVRLWHISRK----------ECLCCFQHIDFVTAICFHP-------------------RDDRYFLSGSLDGKLRLWNI 52 (408)
Q Consensus 2 Dg~i~vwd~~~~----------~~~~~~~h~~~v~~~~~sp-------------------~~~~~l~t~~~dg~i~iw~~ 52 (408)
|+.|.+|+.... ..+..+.|...+..+.|++ .++.+|++++.|++|+|||.
T Consensus 39 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~ 118 (393)
T 4gq1_A 39 DTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNVNSSPVYSLFLACVCQDNTVRLIIT 118 (393)
T ss_dssp SSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC----------CCEEEEEEEEEETTSCEEEEEE
T ss_pred CCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcceeecCCCCCEEEEEeCCCcEEEEEC
Confidence 678888876321 1223334556666666543 15568999999999999999
Q ss_pred CCCCcee---eeeecCCceeeEEEEEec--------CCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeE
Q psy988 53 PDKKVAV---WNEVEGQTKLITAANFCE--------NGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKIS 121 (408)
Q Consensus 53 ~~~~~~~---~~~~~~~~~~v~~~~~~~--------~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~ 121 (408)
.+++... ...+.+|.+.|.+++|+| ++++|++++.|++|+|||+.+........ .|...+.
T Consensus 119 ~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~--------~~~~~v~ 190 (393)
T 4gq1_A 119 KNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGY--------PLSSPGI 190 (393)
T ss_dssp ETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEE--------ECSSCEE
T ss_pred CCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeec--------CCCCCcE
Confidence 9886542 235789999999999998 88999999999999999998776543332 3456899
Q ss_pred EEeeCCCCC-eEEEeeCCCeEEEEEccCcccceeecCc-----------------------cccccceEEEEe-cCCCEE
Q psy988 122 GIEPMPGED-KILVTSNDSRIRLYDLRDLNLSCKYKGY-----------------------VNVSSQIKASFS-HDGKYI 176 (408)
Q Consensus 122 ~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~-~~~~~l 176 (408)
+++|+|++. +|++++.|+.|++||+++++.......+ .+...+.++.|. ++++.|
T Consensus 191 ~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l 270 (393)
T 4gq1_A 191 SVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGI 270 (393)
T ss_dssp EEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEE
T ss_pred EEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEE
Confidence 999999875 7899999999999999887644322111 122335567776 799999
Q ss_pred EEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeee
Q psy988 177 VSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGI 256 (408)
Q Consensus 177 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 256 (408)
++++.|+.+++||+..+. ....+..+...+..+.+.|+.+... .....+..+
T Consensus 271 ~s~s~d~~i~vwd~~~~~------------~~~~l~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~ 322 (393)
T 4gq1_A 271 LAMCKSGAWLRWNLFANN------------DYNEISDSTMKLGPKNLLPNVQGIS----------------LFPSLLGAC 322 (393)
T ss_dssp EEECTTSEEEEEEC-------------------------------CCSCSEEEEC----------------SSCCSSCCE
T ss_pred EEEeCCCCEEEEECccCC------------CCceEeeecCccccEEEcccccccc----------------ccCcceeEE
Confidence 999999999999997542 2234556667777777877766542 112222222
Q ss_pred ccCC-CCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeecc
Q psy988 257 EPMP-GEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTH 324 (408)
Q Consensus 257 ~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 324 (408)
.+.+ ++.++++|+.||+|++||+.+++....+..+.. .|.+++|+|||++||+++.+| +.+|.+.
T Consensus 323 ~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~--~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 323 PHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGM--PIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp ECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSS--CEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred EccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCC--cEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 2333 445667789999999999999988888777655 899999999999999998766 6666554
No 115
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=3e-35 Score=254.06 Aligned_cols=266 Identities=13% Similarity=0.037 Sum_probs=179.1
Q ss_pred EEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCC--------CCCeEEEeeCCCeEEEE
Q psy988 73 ANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMP--------GEDKILVTSNDSRIRLY 144 (408)
Q Consensus 73 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--------~~~~l~~~~~dg~i~i~ 144 (408)
..+.+++.+|++++.|++|++||.++.+....... ....+|.+.|.+++|+| ++++|++++.|++|++|
T Consensus 95 ~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~---~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~W 171 (393)
T 4gq1_A 95 NSSPVYSLFLACVCQDNTVRLIITKNETIITQHVL---GGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIW 171 (393)
T ss_dssp --CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEE---CTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEE
T ss_pred eecCCCCCEEEEEeCCCcEEEEECCCCccceeeee---cccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEE
Confidence 34445677899999999999999998766544333 33456788999999997 78899999999999999
Q ss_pred EccCcccceeecCccccccceEEEEecCCC-EEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEE
Q psy988 145 DLRDLNLSCKYKGYVNVSSQIKASFSHDGK-YIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVF 223 (408)
Q Consensus 145 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 223 (408)
|++++.....+..+.. .+.+++|+|++. +|++++.||.|++||++++....... .....+...+.....
T Consensus 172 d~~~~~~~~~~~~~~~--~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~--------~~~~~~~~~~~s~~~ 241 (393)
T 4gq1_A 172 RLTDEGPILAGYPLSS--PGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENS--------QTELVKNPWLLTLNT 241 (393)
T ss_dssp EEETTEEEEEEEECSS--CEEEEEEETTEEEEEEEEETTSEEEEEETTCCC------------------CSCCCSEEEES
T ss_pred ECCCCceeeeecCCCC--CcEEEEECCCCCceEEecCCCCEEEEEECCCCccccccc--------ccCCcccceEEeccc
Confidence 9998877766666554 478999999874 79999999999999998754332111 001111111222222
Q ss_pred eCCcceeeeecCCCCCCCceeeecCCCceeeeeccC-CCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccce--------
Q psy988 224 APCPELIIAQMEPDKSESTGYVLNATGRKISGIEPM-PGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNV-------- 294 (408)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-------- 294 (408)
.+... ......+...+.++.|+ |+++.|++++.|+++++||+..++....+..+...
T Consensus 242 ~~~~~--------------~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~ 307 (393)
T 4gq1_A 242 LPLVN--------------TCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLP 307 (393)
T ss_dssp GGGC--------------------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSC
T ss_pred cccee--------------eeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcc
Confidence 21111 11123566778888875 89999999999999999999887765555433221
Q ss_pred --------eceeEEEEcC--CCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhh
Q psy988 295 --------SSQIKASFSH--DGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELII 364 (408)
Q Consensus 295 --------~~v~~~~~s~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 364 (408)
.......|+| ++.++++|+.||.|++||+.++ .....+.+|..+|.+++|+|
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~------------~~~~~~~~~~~~V~svafsp------ 369 (393)
T 4gq1_A 308 NVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEK------------DSNSIPIQLGMPIVDFCWHQ------ 369 (393)
T ss_dssp SEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCT------------TCCEEEEECSSCEEEEEECT------
T ss_pred ccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCC------------cEEEEecCCCCcEEEEEEcC------
Confidence 1112234444 4457788999999999999887 45566778999999999999
Q ss_pred hccCCCCCCCcccEEEEEecCCeEEEEeCC
Q psy988 365 AQMEPDKSESTGYVLVSADFNGVIRVFLNK 394 (408)
Q Consensus 365 ~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~ 394 (408)
||++||+++.|| +.+|++.
T Consensus 370 ----------dG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 370 ----------DGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp ----------TSSEEEEEESSE-EEEEEEG
T ss_pred ----------CCCEEEEEeCCC-eEEEEEe
Confidence 999999998766 6666553
No 116
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-35 Score=251.78 Aligned_cols=282 Identities=11% Similarity=0.045 Sum_probs=198.4
Q ss_pred EEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEe
Q psy988 29 CFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVR 108 (408)
Q Consensus 29 ~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 108 (408)
.+.+ ++.+|++|+.||.|++||+.+++.. ..+. ...|.++.|+|+ +++++.|++|++|+.............
T Consensus 43 ~~~~-d~~~l~sg~~Dg~v~iwd~~~~~~~--~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~ 114 (343)
T 3lrv_A 43 SMYY-DKWVCMCRCEDGALHFTQLKDSKTI--TTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTN 114 (343)
T ss_dssp SSSE-EEEEEEEEEETTEEEEEEESSSSCE--EEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTC
T ss_pred hhcC-CCCEEEEECCCCcEEEEECCCCcEE--EEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCc
Confidence 3445 7889999999999999999998866 3343 567888889888 999999999999987743211110000
Q ss_pred e-c-cccccCCCCeEEEeeCC--CCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecCce
Q psy988 109 S-T-RGKNATGRKISGIEPMP--GEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQC 184 (408)
Q Consensus 109 ~-~-~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 184 (408)
. . .....|...|.+++|+| +++++++++.||.|++||+++++.......+.. ..+.+++|+|++.+|++|+.||.
T Consensus 115 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~-~~i~~~~~~pdg~~lasg~~dg~ 193 (343)
T 3lrv_A 115 KVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSD-VEYSSGVLHKDSLLLALYSPDGI 193 (343)
T ss_dssp CEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSS-CCCCEEEECTTSCEEEEECTTSC
T ss_pred ceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCC-CceEEEEECCCCCEEEEEcCCCE
Confidence 0 0 00123456899999999 999999999999999999999887655544322 34789999999999999999999
Q ss_pred EEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCe
Q psy988 185 IYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDK 264 (408)
Q Consensus 185 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 264 (408)
|++||++++... ...+.. .|...|.+++|+|++.+
T Consensus 194 i~iwd~~~~~~~-----------~~~~~~----------------------------------~h~~~v~~l~fs~~g~~ 228 (343)
T 3lrv_A 194 LDVYNLSSPDQA-----------SSRFPV----------------------------------DEEAKIKEVKFADNGYW 228 (343)
T ss_dssp EEEEESSCTTSC-----------CEECCC----------------------------------CTTSCEEEEEECTTSSE
T ss_pred EEEEECCCCCCC-----------ccEEec----------------------------------cCCCCEEEEEEeCCCCE
Confidence 999999754211 012222 13445555555666677
Q ss_pred EEEecCCCeEEEEEcCCCeeeeEEee---ccceeceeEEEEcCCCCEEEEecC-CceEEEeeccccCccccccccCcccc
Q psy988 265 ILVTSNDSRIRLYDLRDLNLSCKYKG---YVNVSSQIKASFSHDGKYIVSGSE-NQCIYIWKTHHDYAKFSSVRRDRNDF 340 (408)
Q Consensus 265 l~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~ 340 (408)
|++++ ++.|++||+++++....+.. +.......+++|+|+|++|++++. |+.|++|++......
T Consensus 229 l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~----------- 296 (343)
T 3lrv_A 229 MVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKN----------- 296 (343)
T ss_dssp EEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCS-----------
T ss_pred EEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccc-----------
Confidence 78888 55999999998876554443 111111146999999999999888 999999999764211
Q ss_pred ceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCC
Q psy988 341 WEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNK 394 (408)
Q Consensus 341 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~ 394 (408)
+.. .++..++|.|... +.+.|++++.||.++++-..
T Consensus 297 ---~~~--~~~~~~~~~~~~~-------------~~~~l~~~~~d~~~~~~~~~ 332 (343)
T 3lrv_A 297 ---WTK--DEESALCLQSDTA-------------DFTDMDVVCGDGGIAAILKT 332 (343)
T ss_dssp ---EEE--EEEEECCC----C-------------CCCEEEEEEETTEEEEEEEC
T ss_pred ---eEe--cCceeEecCcccc-------------ccceeEEEecCCceEEEEec
Confidence 111 5577788876211 56788888889988887543
No 117
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=1.1e-33 Score=244.95 Aligned_cols=274 Identities=14% Similarity=0.165 Sum_probs=211.6
Q ss_pred CCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEE-EEEecCCEEEEEeccCCeeeEEEEEeecccc
Q psy988 35 DRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFA-VVGSYDGRCIFYTTDQLKYHTQIHVRSTRGK 113 (408)
Q Consensus 35 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 113 (408)
+.++++++.|+.|++||+.+++.. ..+..|. .+.+++|+|+++++ ++++.|+.|++||+.+++.......
T Consensus 2 ~~l~vs~~~d~~v~v~d~~~~~~~--~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~------ 72 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVTSNKVT--ATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPA------ 72 (391)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEE--EEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEEC------
T ss_pred CEEEEEcCCCCEEEEEECCCCeEE--EEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEEC------
Confidence 346888999999999999988766 4566664 48999999999987 5677899999999998876554431
Q ss_pred ccCCCCeEEEeeCCCCCeEEEee-CCCeEEEEEccCcccceeecCccccccceEEEEecCCCEE-EEeecCceEEEeeec
Q psy988 114 NATGRKISGIEPMPGEDKILVTS-NDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYI-VSGSENQCIYIWKTH 191 (408)
Q Consensus 114 ~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~i~d~~ 191 (408)
...+.+++|+|++++|++++ .++.|++||+.+++....+..+. .+.+++|+|+++++ ++++.++.|++||+.
T Consensus 73 ---~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~ 146 (391)
T 1l0q_A 73 ---GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK---SPLGLALSPDGKKLYVTNNGDKTVSVINTV 146 (391)
T ss_dssp ---SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS---SEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred ---CCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCC---CcceEEECCCCCEEEEEeCCCCEEEEEECC
Confidence 23899999999999886655 57999999999988877766543 36789999999987 677789999999987
Q ss_pred cceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeE-EEecC
Q psy988 192 HDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKI-LVTSN 270 (408)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~ 270 (408)
++.... .+..+ ..+..++|+|+++++ ++++.
T Consensus 147 ~~~~~~------------~~~~~------------------------------------~~~~~~~~~~dg~~l~~~~~~ 178 (391)
T 1l0q_A 147 TKAVIN------------TVSVG------------------------------------RSPKGIAVTPDGTKVYVANFD 178 (391)
T ss_dssp TTEEEE------------EEECC------------------------------------SSEEEEEECTTSSEEEEEETT
T ss_pred CCcEEE------------EEecC------------------------------------CCcceEEECCCCCEEEEEeCC
Confidence 543221 11111 123455556666655 56788
Q ss_pred CCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEec---CCceEEEeeccccCccccccccCccccceeeeee
Q psy988 271 DSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS---ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAH 347 (408)
Q Consensus 271 d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h 347 (408)
++.|++||+++++....+..+ ..+.+++|+|++++|++++ .++.|++||+.++ +.+..+..|
T Consensus 179 ~~~v~~~d~~~~~~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~------------~~~~~~~~~ 243 (391)
T 1l0q_A 179 SMSISVIDTVTNSVIDTVKVE---AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN------------KITARIPVG 243 (391)
T ss_dssp TTEEEEEETTTTEEEEEEECS---SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT------------EEEEEEECC
T ss_pred CCEEEEEECCCCeEEEEEecC---CCccceEECCCCCEEEEEecCcCCCcEEEEECCCC------------eEEEEEecC
Confidence 999999999999887776643 2567899999999999887 6899999999876 445556555
Q ss_pred ccceEEEEecCCchhhhhccCCCCCCCcccEE-EEEecCCeEEEEeCCCCCCccccc
Q psy988 348 NAVVTCAVFAPCPELIIAQMEPDKSESTGYVL-VSADFNGVIRVFLNKTKPKHSSLP 403 (408)
Q Consensus 348 ~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l-~s~~~dg~v~iw~~~~~~~~~~~~ 403 (408)
. .+.+++|+| ++++| ++++.|+.|++||+.+++....++
T Consensus 244 ~-~~~~~~~s~----------------dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~ 283 (391)
T 1l0q_A 244 P-DPAGIAVTP----------------DGKKVYVALSFXNTVSVIDTATNTITATMA 283 (391)
T ss_dssp S-SEEEEEECT----------------TSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred C-CccEEEEcc----------------CCCEEEEEcCCCCEEEEEECCCCcEEEEEE
Confidence 4 478999999 88766 677889999999999877655543
No 118
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.8e-34 Score=247.99 Aligned_cols=276 Identities=13% Similarity=0.173 Sum_probs=208.1
Q ss_pred CCceEEEEeccC-CeeE-eEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEE--
Q psy988 1 MDKTVRLWHISR-KECL-CCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANF-- 75 (408)
Q Consensus 1 ~Dg~i~vwd~~~-~~~~-~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~-- 75 (408)
.||.|+|||+.+ ++.+ ..+. |.+.|++++|+| ++++|++++.||.|++||+.+++.. .+..|...|.+++|
T Consensus 62 ~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~---~~~~~~~~v~~~~~~~ 137 (368)
T 3mmy_A 62 WANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSD-DGSKVFTASCDKTAKMWDLSSNQAI---QIAQHDAPVKTIHWIK 137 (368)
T ss_dssp TTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEE---EEEECSSCEEEEEEEE
T ss_pred CCCcEEEEEcCCCCceeEEEeccccCCEEEEEECc-CCCEEEEEcCCCcEEEEEcCCCCce---eeccccCceEEEEEEe
Confidence 389999999997 5554 4454 999999999999 9999999999999999999988765 46679999999999
Q ss_pred ecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceee
Q psy988 76 CENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKY 155 (408)
Q Consensus 76 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 155 (408)
+|++++|++++.||.|++||+++.+........ ..+.++.+. ...+++++.++.+++|+++........
T Consensus 138 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~---------~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~ 206 (368)
T 3mmy_A 138 APNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLP---------ERCYCADVI--YPMAVVATAERGLIVYQLENQPSEFRR 206 (368)
T ss_dssp CSSCEEEEEEETTSEEEEECSSCSSCSEEEECS---------SCEEEEEEE--TTEEEEEEGGGCEEEEECSSSCEEEEE
T ss_pred CCCCCEEEEccCCCcEEEEECCCCcEEEEEecC---------CCceEEEec--CCeeEEEeCCCcEEEEEeccccchhhh
Confidence 899999999999999999999988765554321 256666665 458888999999999999876544333
Q ss_pred cCccccccceEEEEecCCCE----EEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceee
Q psy988 156 KGYVNVSSQIKASFSHDGKY----IVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELII 231 (408)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~----l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 231 (408)
...........+.+.++... +++++.||.|++||++..... .....+..|.....
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~---------~~~~~~~~~~~~~~------------ 265 (368)
T 3mmy_A 207 IESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPA---------KDNFTFKCHRSNGT------------ 265 (368)
T ss_dssp CCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHH---------HHSEEEECSEEC--------------
T ss_pred ccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCcc---------ccceeeeeeecccc------------
Confidence 32222233445666655544 999999999999999753210 11112222221100
Q ss_pred eecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEE
Q psy988 232 AQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVS 311 (408)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 311 (408)
......+...|.+++|+|++++|++++.||.|++||+++++++..+..|.. .+.+++|+|+|++|++
T Consensus 266 -----------~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~s~~g~~l~~ 332 (368)
T 3mmy_A 266 -----------NTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQ--PISACCFNHNGNIFAY 332 (368)
T ss_dssp -------------CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSS--CEEEEEECTTSSCEEE
T ss_pred -----------cccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCC--CceEEEECCCCCeEEE
Confidence 000112334677888888888999999999999999999999988887655 8999999999999999
Q ss_pred ecCCceEEEeeccc
Q psy988 312 GSENQCIYIWKTHH 325 (408)
Q Consensus 312 ~~~dg~i~iw~~~~ 325 (408)
++.|+..+.|++..
T Consensus 333 ~s~d~~~~~~~~~~ 346 (368)
T 3mmy_A 333 ASSYDWSKGHEFYN 346 (368)
T ss_dssp EECCCSTTCGGGCC
T ss_pred EecccccccccccC
Confidence 99998766666543
No 119
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=3.3e-34 Score=244.49 Aligned_cols=279 Identities=14% Similarity=0.147 Sum_probs=197.0
Q ss_pred CCceEEEEeccCC----eeEeEEE-eCCceEEEEEcCC-CCCEEEEEeCCCcEEEEecCCCCc-------eeeeeecCCc
Q psy988 1 MDKTVRLWHISRK----ECLCCFQ-HIDFVTAICFHPR-DDRYFLSGSLDGKLRLWNIPDKKV-------AVWNEVEGQT 67 (408)
Q Consensus 1 ~Dg~i~vwd~~~~----~~~~~~~-h~~~v~~~~~sp~-~~~~l~t~~~dg~i~iw~~~~~~~-------~~~~~~~~~~ 67 (408)
.||.|+|||+.++ +....+. |...|++++|+|. ++++|++|+.||.|++||+.++.. .....+..|.
T Consensus 31 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 110 (351)
T 3f3f_A 31 SDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSK 110 (351)
T ss_dssp TTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCS
T ss_pred CCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccC
Confidence 3899999999876 4555555 9999999999994 389999999999999999988642 2346788999
Q ss_pred eeeEEEEEecC--CCEEEEEecCCEEEEEeccCCeeeEEEEEe-----eccccccCCCCeEEEeeCCC---CCeEEEeeC
Q psy988 68 KLITAANFCEN--GKFAVVGSYDGRCIFYTTDQLKYHTQIHVR-----STRGKNATGRKISGIEPMPG---EDKILVTSN 137 (408)
Q Consensus 68 ~~v~~~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-----~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~ 137 (408)
..|.+++|+|+ +++|++++.||.|++||+++.+........ .......+...+.+++|+|+ +..+++++.
T Consensus 111 ~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 190 (351)
T 3f3f_A 111 GSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSAL 190 (351)
T ss_dssp SCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEET
T ss_pred CceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecC
Confidence 99999999999 999999999999999999876643322211 11112356678999999997 899999999
Q ss_pred CCeEEEEEccCccc--ceeecCccccccceEEEEecCC----CEEEEeecCceEEEeeeccceeeeeecccCCCcccccc
Q psy988 138 DSRIRLYDLRDLNL--SCKYKGYVNVSSQIKASFSHDG----KYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGI 211 (408)
Q Consensus 138 dg~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 211 (408)
++.+.+|+...++. ...+..|. ..+.+++|+|++ ++|++++.||.|++||++.+..... .
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~h~--~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~------------~ 256 (351)
T 3f3f_A 191 EQAIIYQRGKDGKLHVAAKLPGHK--SLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLA------------S 256 (351)
T ss_dssp TEEEEEEECTTSCEEEEEECCCCC--SCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-----------------
T ss_pred CCcEEEEccCCCceeeeeecCCCC--cceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccc------------c
Confidence 99998888877765 44445544 458899999998 8999999999999999975422111 0
Q ss_pred ccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeec
Q psy988 212 KAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGY 291 (408)
Q Consensus 212 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 291 (408)
.............+..... ......+.....+.+|+....+.+..+.+|
T Consensus 257 ~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 305 (351)
T 3f3f_A 257 EESLTNSNMFDNSADVDMD-------------------------------AQGRSDSNTEEKAELQSNLQVELLSEHDDH 305 (351)
T ss_dssp -----------------------------------------------------------------CCSEEEEEEEEECTT
T ss_pred CCcccceeccCCCcccccc-------------------------------cccccccccceeeeecccccccEEEEEecc
Confidence 1111111111111111111 011122344556677777777777778776
Q ss_pred cceeceeEEEEcCCCCEEEEecCCceEEEeecccc
Q psy988 292 VNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHD 326 (408)
Q Consensus 292 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 326 (408)
.. .|.+++|+|++++|++|+.||.|++|++.++
T Consensus 306 ~~--~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 306 NG--EVWSVSWNLTGTILSSAGDDGKVRLWKATYS 338 (351)
T ss_dssp SS--CEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred cc--cEEEEEEcCCCCEEEEecCCCcEEEEecCcC
Confidence 55 7999999999999999999999999999875
No 120
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-34 Score=249.05 Aligned_cols=288 Identities=11% Similarity=0.134 Sum_probs=202.5
Q ss_pred CceEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCE
Q psy988 2 DKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKF 81 (408)
Q Consensus 2 Dg~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 81 (408)
|++|+ |.+.++.+ -+|...|.+++|+| +| .++.+.+|+.+.... ..+ .|...|.+++|+|+|++
T Consensus 36 D~TV~--d~~~~~~l--~gh~~~v~~V~FsP-dg-------~~~~~~~~~~~~~~~---~~~-~~~~~V~~vawSPdG~~ 99 (588)
T 2j04_A 36 DISIG--QPKYAKDI--NCNSKNLFHVKEFP-LE-------FENKLDFELAQQNGL---LNS-QPVCYPRVCKPSPIDDW 99 (588)
T ss_dssp SEEEE--EECCCSCC--SSBGGGTEEEEEEC-CC-------CCCTTTTSCCCSSCS---STT-SCSCCEEEEEECSSSSC
T ss_pred Cceee--ccccccee--cCCCccEEEEEECC-CC-------CcceEEEEeCCCceE---eec-CCCCcEEEEEECCCCCE
Confidence 78888 76666655 25999999999999 77 466666665433322 222 45788999999999999
Q ss_pred EEEEecCCEEEEEeccCCeeeEEEEEeecccccc--CCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCccc-------c
Q psy988 82 AVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNA--TGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNL-------S 152 (408)
Q Consensus 82 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-------~ 152 (408)
||+++.||.|++||.++ . ..... +.. ....+.+++|+|+|++|++|+.||+|++||+.++.. +
T Consensus 100 LAs~s~dg~V~iwd~~~--~-----l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l 171 (588)
T 2j04_A 100 MAVLSNNGNVSVFKDNK--M-----LTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFE 171 (588)
T ss_dssp EEEEETTSCEEEEETTE--E-----EEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEE
T ss_pred EEEEeCCCcEEEEeCCc--e-----eeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceee
Confidence 99999999999999654 1 11111 111 123699999999999999999999999999998753 3
Q ss_pred eee----cCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCcccccc-ccccceEEEEEEeCCc
Q psy988 153 CKY----KGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGI-KAHNAVVTCAVFAPCP 227 (408)
Q Consensus 153 ~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~ 227 (408)
..+ .+| ...|.+++|+|+| +++++.|+.|++||+..+... ...+.+ ..|...|
T Consensus 172 ~ti~~~~~gh--~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~---------~~~~tL~~~h~~~V--------- 229 (588)
T 2j04_A 172 SSIRLSDAGS--KDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQ---------PVSRMIQNASRRKI--------- 229 (588)
T ss_dssp EEEECSCTTC--CCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSC---------CCEEEEECCCSSCC---------
T ss_pred eeeecccccc--cccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccc---------cceeeecccccCcE---------
Confidence 444 333 3569999999999 888899999999998653210 001122 1344444
Q ss_pred ceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEE--cCC
Q psy988 228 ELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASF--SHD 305 (408)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~--s~~ 305 (408)
.+++|+ ++.|++++ +++|++||+.+++......+|.. .+..++| +||
T Consensus 230 --------------------------~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~--~V~~va~~~s~d 278 (588)
T 2j04_A 230 --------------------------TDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLE--NFHIIPLNHEKE 278 (588)
T ss_dssp --------------------------CCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCS--CCCEEEETTCSS
T ss_pred --------------------------EEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCc--eEEEEEeeeCCC
Confidence 444554 35567776 69999999998877444435544 7889999 999
Q ss_pred CCEEEEecCCceEEEeeccccC-----ccccccc------cCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCC
Q psy988 306 GKYIVSGSENQCIYIWKTHHDY-----AKFSSVR------RDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSES 374 (408)
Q Consensus 306 ~~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~ 374 (408)
+..|+++++||+ ++|..+.-. ....... ......+..+.+ ...|.+++|+|
T Consensus 279 ~~~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~-~~~I~~va~SP---------------- 340 (588)
T 2j04_A 279 STILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYET-TLVIHGISLSP---------------- 340 (588)
T ss_dssp CEEEEECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSCC-EEEEEEEEECT----------------
T ss_pred CCEEEEEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeecc-ceEEEEEEECC----------------
Confidence 999999999999 999975211 0000000 001112333443 66799999999
Q ss_pred cccEEEEEec
Q psy988 375 TGYVLVSADF 384 (408)
Q Consensus 375 ~~~~l~s~~~ 384 (408)
||+.+|+++.
T Consensus 341 dG~~lA~~~~ 350 (588)
T 2j04_A 341 DGYSIAIVYD 350 (588)
T ss_dssp TSSEEEEEEE
T ss_pred CCCEEEEEEe
Confidence 8889988874
No 121
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=2.7e-33 Score=227.07 Aligned_cols=272 Identities=12% Similarity=0.026 Sum_probs=185.3
Q ss_pred CceEEEEeccCC---eeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcE-EEEec--CCC--CceeeeeecCCceeeEE
Q psy988 2 DKTVRLWHISRK---ECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKL-RLWNI--PDK--KVAVWNEVEGQTKLITA 72 (408)
Q Consensus 2 Dg~i~vwd~~~~---~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i-~iw~~--~~~--~~~~~~~~~~~~~~v~~ 72 (408)
+..|++|+..++ +.++++. |+.+|..+.+.|+.-+++..+-.+=++ .++-+ ... .........+|...|..
T Consensus 62 ~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~ 141 (356)
T 2w18_A 62 EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLG 141 (356)
T ss_dssp SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEE
T ss_pred cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCCeEEEEe
Confidence 468999999998 8888888 888999999999433433333222111 11111 111 11111222345545544
Q ss_pred EEEecCCCEEEEEe--cCCEEEEEeccC-CeeeEEEEEeeccccccCCCCeEEEeeCC---CCCeEEEeeCCCeEEEEEc
Q psy988 73 ANFCENGKFAVVGS--YDGRCIFYTTDQ-LKYHTQIHVRSTRGKNATGRKISGIEPMP---GEDKILVTSNDSRIRLYDL 146 (408)
Q Consensus 73 ~~~~~~~~~l~~~~--~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~i~d~ 146 (408)
+ ++++++.++. .|+.|++|++.. ++...... .|...+..++|+| ++..|++++.|++|++||+
T Consensus 142 l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~--------~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl 210 (356)
T 2w18_A 142 L---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQF--------LMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNL 210 (356)
T ss_dssp E---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEE--------ECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEET
T ss_pred c---CCCcEEEecccCCCCcEEEEEECCCCceeeeec--------cCCCceeeEEeeccCCCCceEEEecCCCcEEEEEC
Confidence 3 5566555533 588999999844 44433322 3445788888888 7799999999999999999
Q ss_pred cCcccceeecCccc-cccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeC
Q psy988 147 RDLNLSCKYKGYVN-VSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAP 225 (408)
Q Consensus 147 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 225 (408)
++++++.++.++.. ...+.+++|+|+|+++++++.+.. +|+
T Consensus 211 ~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~--~w~------------------------------------ 252 (356)
T 2w18_A 211 KTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCA--KES------------------------------------ 252 (356)
T ss_dssp TTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC---------------------------------------------
T ss_pred CCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCC--cce------------------------------------
Confidence 99999999875432 345667899999999988876433 354
Q ss_pred CcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEe-----eccceeceeEE
Q psy988 226 CPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYK-----GYVNVSSQIKA 300 (408)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-----~~~~~~~v~~~ 300 (408)
+++|+.|++|++||..+++.+..+. +|.. ...+.
T Consensus 253 ---------------------------------------laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~--~~lsg 291 (356)
T 2w18_A 253 ---------------------------------------ESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAG--RFLEG 291 (356)
T ss_dssp --------------------------------------------CCEEEEEEETTTTEEEEEEEECCCTTCCC--CEEEE
T ss_pred ---------------------------------------eeccCCCcEEEEEECCCCEEEEEEEeeccCCCcc--eeEcc
Confidence 4678999999999999998876652 3322 23333
Q ss_pred EEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceE-EEEecCCchhhhhccCCCCCCCcccEE
Q psy988 301 SFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVT-CAVFAPCPELIIAQMEPDKSESTGYVL 379 (408)
Q Consensus 301 ~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~~~~~~~~~~s~~~~~l 379 (408)
.+ ++.++|+|+.|++|+|||+.++ +++.++.+|...+. +++|+| ||++|
T Consensus 292 ~~--sg~~lASgS~DgTIkIWDl~tG------------k~l~tL~gH~~~vvs~vafSP----------------DG~~L 341 (356)
T 2w18_A 292 DV--KDHCAAAILTSGTIAIWDLLLG------------QCTALLPPVSDQHWSFVKWSG----------------TDSHL 341 (356)
T ss_dssp EE--ETTEEEEEETTSCEEEEETTTC------------SEEEEECCC--CCCCEEEECS----------------SSSEE
T ss_pred cc--CCCEEEEEcCCCcEEEEECCCC------------cEEEEecCCCCCeEEEEEECC----------------CCCEE
Confidence 33 4889999999999999999987 67888888987655 689999 99999
Q ss_pred EEEecCCeEEEEeC
Q psy988 380 VSADFNGVIRVFLN 393 (408)
Q Consensus 380 ~s~~~dg~v~iw~~ 393 (408)
++|+.|++|||||+
T Consensus 342 aSGS~D~TIklWd~ 355 (356)
T 2w18_A 342 LAGQKDGNIFVYHY 355 (356)
T ss_dssp EEECTTSCEEEEEE
T ss_pred EEEECCCcEEEecC
Confidence 99999999999995
No 122
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=100.00 E-value=2.7e-32 Score=243.54 Aligned_cols=331 Identities=10% Similarity=0.114 Sum_probs=236.8
Q ss_pred CceEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEec--CCCCceeeeeecCCceeeEEEEEec--
Q psy988 2 DKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNI--PDKKVAVWNEVEGQTKLITAANFCE-- 77 (408)
Q Consensus 2 Dg~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~--~~~~~~~~~~~~~~~~~v~~~~~~~-- 77 (408)
|++|.+||..+++++..+.....+..++|+| ++++|++++.|++|.+||+ .+++.. ..+.. ...+..++|+|
T Consensus 158 d~~V~v~D~~t~~~~~~i~~g~~~~~v~~sp-dg~~l~v~~~d~~V~v~D~~~~t~~~~--~~i~~-g~~p~~va~sp~~ 233 (543)
T 1nir_A 158 AGQIALVDGDSKKIVKVIDTGYAVHISRMSA-SGRYLLVIGRDARIDMIDLWAKEPTKV--AEIKI-GIEARSVESSKFK 233 (543)
T ss_dssp GTEEEEEETTTCCEEEEEECSTTEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCEEE--EEEEC-CSEEEEEEECCST
T ss_pred CCeEEEEECCCceEEEEEecCcccceEEECC-CCCEEEEECCCCeEEEEECcCCCCcEE--EEEec-CCCcceEEeCCCc
Confidence 7899999999999999998333499999999 9999999999999999999 666554 45553 45679999999
Q ss_pred --CCCEEEEEec-CCEEEEEeccCCeeeEEEEEeecccc--c-cCCCCeEEEeeCCCCCeEEE-eeCCCeEEEEEccCcc
Q psy988 78 --NGKFAVVGSY-DGRCIFYTTDQLKYHTQIHVRSTRGK--N-ATGRKISGIEPMPGEDKILV-TSNDSRIRLYDLRDLN 150 (408)
Q Consensus 78 --~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~--~-~~~~~v~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~ 150 (408)
+|+++++++. +++|.+||..+.+....+........ . .....+..+.++|++..+++ ...++.|.+||..+.+
T Consensus 234 ~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~ 313 (543)
T 1nir_A 234 GYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDID 313 (543)
T ss_dssp TCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSS
T ss_pred CCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCC
Confidence 9999999885 89999999999887666543221100 0 11237889999998776655 4668999999998876
Q ss_pred cce--eecCccccccceEEEEecCCCEEEEee-cCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCc
Q psy988 151 LSC--KYKGYVNVSSQIKASFSHDGKYIVSGS-ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCP 227 (408)
Q Consensus 151 ~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 227 (408)
.+. .+. ....+..+.|+|+|++|++++ .+++|.+||..++........ ....|......+ ++|++
T Consensus 314 ~l~~~~i~---~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~--------g~~ph~g~g~~~-~~p~~ 381 (543)
T 1nir_A 314 NLTVTSIG---AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDV--------GKTPHPGRGANF-VHPKY 381 (543)
T ss_dssp SCEEEEEE---CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEEC--------SSSBCCTTCEEE-EETTT
T ss_pred cceeEEec---cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeecc--------CCCCCCCCCccc-CCCCC
Confidence 544 222 123356789999999877655 588999999987543221100 000121111111 23331
Q ss_pred ceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEec-CCCeEEEEEcCC-------CeeeeEEeeccceeceeE
Q psy988 228 ELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTS-NDSRIRLYDLRD-------LNLSCKYKGYVNVSSQIK 299 (408)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~i~d~~~-------~~~~~~~~~~~~~~~v~~ 299 (408)
+..++++. .|++|.+||+.+ +++++++..+.. .+..
T Consensus 382 ----------------------------------g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~--~~~~ 425 (543)
T 1nir_A 382 ----------------------------------GPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGG--GSLF 425 (543)
T ss_dssp ----------------------------------EEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS--CCCC
T ss_pred ----------------------------------ccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCC--CceE
Confidence 33456664 689999999998 888999988654 5567
Q ss_pred EEEcCCCCEEEEec-------CCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCC
Q psy988 300 ASFSHDGKYIVSGS-------ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKS 372 (408)
Q Consensus 300 ~~~s~~~~~l~~~~-------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~ 372 (408)
++++|+|++|++++ .+++|.+||+.+....+..+.- .....+..+...+..++|+|
T Consensus 426 v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v---~~~~~~~~~~~~~~~~~~~~-------------- 488 (543)
T 1nir_A 426 IKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPI---AEWADLGEGAKRVVQPEYNK-------------- 488 (543)
T ss_dssp EECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECH---HHHHCCCSSCCEEEEEEECS--------------
T ss_pred EEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeec---hhhcccCCCCCceEeccCCC--------------
Confidence 89999999999987 2679999999987422110000 00001235677899999999
Q ss_pred CCcccEEEEEe-----cCCeEEEEeCCCCCCccccc
Q psy988 373 ESTGYVLVSAD-----FNGVIRVFLNKTKPKHSSLP 403 (408)
Q Consensus 373 s~~~~~l~s~~-----~dg~v~iw~~~~~~~~~~~~ 403 (408)
+|+.|..+. .|+.|.|||.++++....++
T Consensus 489 --~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 489 --RGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp --SSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred --CCCEEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence 888877652 47999999999999877776
No 123
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-33 Score=246.20 Aligned_cols=270 Identities=10% Similarity=0.052 Sum_probs=193.3
Q ss_pred ceEEEEEcCCCCCEE-EEEeCCCcEEEEecC--CCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCe
Q psy988 24 FVTAICFHPRDDRYF-LSGSLDGKLRLWNIP--DKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLK 100 (408)
Q Consensus 24 ~v~~~~~sp~~~~~l-~t~~~dg~i~iw~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 100 (408)
.|++++|+| ++++| ++++.||.|++||+. +++.........|...|.+++|+|++++|++++.+|.+++|++.+..
T Consensus 104 ~v~~~~~s~-d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~ 182 (450)
T 2vdu_B 104 YIRNLRLTS-DESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIP 182 (450)
T ss_dssp CEEEEEECT-TSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCC
T ss_pred ceEEEEEcC-CCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcc
Confidence 699999999 88886 899999999999998 77665322223667889999999999999999999999999998765
Q ss_pred eeEEEEEeeccccccCCCCeEEEeeCCC---CCeEEEeeCCCeEEEEEccCccccee-ecCccccccceEEEEecCCCEE
Q psy988 101 YHTQIHVRSTRGKNATGRKISGIEPMPG---EDKILVTSNDSRIRLYDLRDLNLSCK-YKGYVNVSSQIKASFSHDGKYI 176 (408)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l 176 (408)
.... .......|...|.+++|+|+ +++|++++.|+.|++||+++++.+.. +.+|. ..+.+++|+ ++++|
T Consensus 183 ~~~~----~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~--~~v~~~~~s-d~~~l 255 (450)
T 2vdu_B 183 EEKF----TQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHK--HFVSSICCG-KDYLL 255 (450)
T ss_dssp CSSC----CCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCS--SCEEEEEEC-STTEE
T ss_pred cccc----cceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCC--CceEEEEEC-CCCEE
Confidence 4210 11122346679999999999 88999999999999999999887766 44554 448899999 99999
Q ss_pred EEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeee
Q psy988 177 VSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGI 256 (408)
Q Consensus 177 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 256 (408)
++++.|+.|++||++++..............+. ...+..+ ..|.+ .........+.++
T Consensus 256 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~------------------~~~~~~~~~v~~i 313 (450)
T 2vdu_B 256 LSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYL-NDQHLAP---PRFQN------------------ENNDIIEFAVSKI 313 (450)
T ss_dssp EEEESSSEEEEEETTTCCEEEEEECHHHHGGGC-CTTSBC-------------------------------CBCCCEEEE
T ss_pred EEEeCCCeEEEEECCCCcEeeeecchhhhhhhh-hhccccc---ccccc------------------cccccceEEEEEE
Confidence 999999999999998754322111000000000 0000000 00000 0001234567888
Q ss_pred ccCCCCCeEEEec-CCCeEEEEEc--CCC---eeeeEEeeccceeceeEEEEcCCCCEEEEecC------CceEEEeecc
Q psy988 257 EPMPGEDKILVTS-NDSRIRLYDL--RDL---NLSCKYKGYVNVSSQIKASFSHDGKYIVSGSE------NQCIYIWKTH 324 (408)
Q Consensus 257 ~~~~~~~~l~~~~-~d~~i~i~d~--~~~---~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------dg~i~iw~~~ 324 (408)
+++|++++|++++ .++.|++|++ .++ +.+..+..+ ..+.+++|+|++.++++++. +..|.+|.+.
T Consensus 314 ~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~---~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 314 IKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP---YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYN 390 (450)
T ss_dssp EECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS---SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred EEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC---CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEE
Confidence 9999999999988 8999999999 555 566666654 47889999996555555443 4568999876
Q ss_pred cc
Q psy988 325 HD 326 (408)
Q Consensus 325 ~~ 326 (408)
..
T Consensus 391 ~~ 392 (450)
T 2vdu_B 391 LN 392 (450)
T ss_dssp TT
T ss_pred cC
Confidence 53
No 124
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-33 Score=239.71 Aligned_cols=260 Identities=10% Similarity=0.072 Sum_probs=195.7
Q ss_pred CceEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecC---------CCCceeeeeecCCceeeEE
Q psy988 2 DKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIP---------DKKVAVWNEVEGQTKLITA 72 (408)
Q Consensus 2 Dg~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~---------~~~~~~~~~~~~~~~~v~~ 72 (408)
||+|++||+.+++.+..+. ...|.++.|+| + +++++.|++|++|+.. +++... ....+|...|.+
T Consensus 57 Dg~v~iwd~~~~~~~~~~~-~~~v~~~~~~~-~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~ 130 (343)
T 3lrv_A 57 DGALHFTQLKDSKTITTIT-TPNPRTGGEHP-A---IISRGPCNRLLLLYPGNQITILDSKTNKVLR-EIEVDSANEIIY 130 (343)
T ss_dssp TTEEEEEEESSSSCEEEEE-EECCCTTCCCC-S---EEEECSTTEEEEEETTTEEEEEETTTCCEEE-EEECCCSSCEEE
T ss_pred CCcEEEEECCCCcEEEEEe-cCCceeeeeCC-c---eEEecCCCeEEEEEccCceEEeecCCcceeE-EeecCCCCCEEE
Confidence 8999999999999988887 56788999999 5 9999999999999765 333221 223367788999
Q ss_pred EEEec--CCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcc
Q psy988 73 ANFCE--NGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLN 150 (408)
Q Consensus 73 ~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 150 (408)
++|+| +++++++++.||.|++||+++++...... ..+...+.+++|+|++.+|++|+.||.|++||+++++
T Consensus 131 ~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~-------~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~ 203 (343)
T 3lrv_A 131 MYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHS-------AKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPD 203 (343)
T ss_dssp EECCC---CCEEEEEETTCCEEEEESSSSCEEEEEC-------CCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTT
T ss_pred EEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-------cCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCC
Confidence 99999 99999999999999999999877632211 1234579999999999999999999999999999998
Q ss_pred cc-eeecC-ccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcc
Q psy988 151 LS-CKYKG-YVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPE 228 (408)
Q Consensus 151 ~~-~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 228 (408)
.. ..+.. |. ..+.+++|+|++.+|++++ ++.|++||+++...... +..+..+...+.
T Consensus 204 ~~~~~~~~~h~--~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~---------~~~~~~~~~~~~--------- 262 (343)
T 3lrv_A 204 QASSRFPVDEE--AKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLA---------YPTYTIPEFKTG--------- 262 (343)
T ss_dssp SCCEECCCCTT--SCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBS---------SCCCBC-----C---------
T ss_pred CCccEEeccCC--CCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCccee---------eccccccccccc---------
Confidence 77 66766 54 4588999999999999999 55999999976421100 011111111110
Q ss_pred eeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecC-CCeEEEEEcCCCeeeeEEeeccceeceeEEEEcC---
Q psy988 229 LIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSN-DSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSH--- 304 (408)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~--- 304 (408)
. .+++|+|++++|++++. |+.+++|++......... ..+..++|+|
T Consensus 263 ----------------------~--~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~------~~~~~~~~~~~~~ 312 (343)
T 3lrv_A 263 ----------------------T--VTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK------DEESALCLQSDTA 312 (343)
T ss_dssp ----------------------C--EEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE------EEEEECCC----C
T ss_pred ----------------------c--eEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe------cCceeEecCcccc
Confidence 0 35777778888898887 999999999765433222 2566788998
Q ss_pred CCCEEEEecCCceEEEeeccc
Q psy988 305 DGKYIVSGSENQCIYIWKTHH 325 (408)
Q Consensus 305 ~~~~l~~~~~dg~i~iw~~~~ 325 (408)
+.+.+++++.||.+.++-...
T Consensus 313 ~~~~l~~~~~d~~~~~~~~~~ 333 (343)
T 3lrv_A 313 DFTDMDVVCGDGGIAAILKTN 333 (343)
T ss_dssp CCCEEEEEEETTEEEEEEECS
T ss_pred ccceeEEEecCCceEEEEecC
Confidence 899999999999999886443
No 125
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=1.5e-32 Score=233.79 Aligned_cols=249 Identities=12% Similarity=0.115 Sum_probs=177.9
Q ss_pred EEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCC
Q psy988 49 LWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPG 128 (408)
Q Consensus 49 iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 128 (408)
||++.+.+.. .....|...|.+++|+|+|++|++|+.++ +++|++++.+....... ..+..+.+.++
T Consensus 3 i~s~~~~~~~--~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~----------~~~~~~~~~~~ 69 (355)
T 3vu4_A 3 LGSMITRNPI--VPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM----------RHLSKVRMLHR 69 (355)
T ss_dssp ------------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC----------SCCCEEEECTT
T ss_pred cccccccCCc--cccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec----------CCeEEEEEcCC
Confidence 4555555443 46688999999999999999999988775 78999887654332211 14677788888
Q ss_pred CCeE-EEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCcc
Q psy988 129 EDKI-LVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDF 207 (408)
Q Consensus 129 ~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 207 (408)
++.+ ++++.|+.|++||+.+++.+..+..+ ..+.++.++++. ++++ .++.|++||+.+.. ..
T Consensus 70 ~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~---~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~-----------~~ 132 (355)
T 3vu4_A 70 TNYVAFVTGVKEVVHIWDDVKKQDVSRIKVD---APVKDLFLSREF--IVVS-YGDVISVFKFGNPW-----------KR 132 (355)
T ss_dssp SSEEEEECSSTTEEEEEETTTTEEEEEEECS---SCEEEEEECSSE--EEEE-ETTEEEEEESSTTC-----------CB
T ss_pred CCEEEEEECCccEEEEEECCCCcEEEEEECC---CceEEEEEcCCE--EEEE-EcCEEEEEECCCCc-----------ee
Confidence 8877 45677899999999999888877633 347788888764 4444 47899999997541 11
Q ss_pred ccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEE--ecCCCeEEEEEcCCCe--
Q psy988 208 WEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILV--TSNDSRIRLYDLRDLN-- 283 (408)
Q Consensus 208 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--~~~d~~i~i~d~~~~~-- 283 (408)
+..+.. +...+++++ .++++ |+.||.|++||+.+++
T Consensus 133 ~~~~~~---~~~~~~~s~-------------------------------------~~la~~sg~~~g~v~iwd~~~~~~~ 172 (355)
T 3vu4_A 133 ITDDIR---FGGVCEFSN-------------------------------------GLLVYSNEFNLGQIHITKLQSSGSA 172 (355)
T ss_dssp SSCCEE---EEEEEEEET-------------------------------------TEEEEEESSCTTCEEEEECCC----
T ss_pred eEEecc---CCceEEEEc-------------------------------------cEEEEeCCCcCcEEEEEECCCCCcc
Confidence 122222 222333333 23444 6899999999999865
Q ss_pred --------------eeeEEeeccceeceeEEEEcCCCCEEEEecCCce-EEEeeccccCccccccccCccccceeee-e-
Q psy988 284 --------------LSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQC-IYIWKTHHDYAKFSSVRRDRNDFWEGIK-A- 346 (408)
Q Consensus 284 --------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-i~iw~~~~~~~~~~~~~~~~~~~~~~~~-~- 346 (408)
....+.+|.. .|.+++|+|+|++||+|+.|++ |++||+.++ +++..+. +
T Consensus 173 ~~~~~~~~~~~~~p~~~~~~~h~~--~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~------------~~~~~~~~g~ 238 (355)
T 3vu4_A 173 TTQDQGVQQKAILGKGVLIKAHTN--PIKMVRLNRKSDMVATCSQDGTIIRVFKTEDG------------VLVREFRRGL 238 (355)
T ss_dssp --------------CCEEECCCSS--CEEEEEECTTSSEEEEEETTCSEEEEEETTTC------------CEEEEEECTT
T ss_pred ccccccccccccCcccEEEEccCC--ceEEEEECCCCCEEEEEeCCCCEEEEEECCCC------------cEEEEEEcCC
Confidence 2566777655 8999999999999999999998 999999987 5667777 5
Q ss_pred eccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCC
Q psy988 347 HNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKP 397 (408)
Q Consensus 347 h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 397 (408)
|...|.+++|+| ++++|++++.||+|++||+....
T Consensus 239 h~~~v~~~~~s~----------------~~~~l~s~s~d~~v~iw~~~~~~ 273 (355)
T 3vu4_A 239 DRADVVDMKWST----------------DGSKLAVVSDKWTLHVFEIFNDQ 273 (355)
T ss_dssp CCSCEEEEEECT----------------TSCEEEEEETTCEEEEEESSCCS
T ss_pred CCCcEEEEEECC----------------CCCEEEEEECCCEEEEEEccCCC
Confidence 999999999999 99999999999999999998764
No 126
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=3.8e-32 Score=238.70 Aligned_cols=273 Identities=9% Similarity=0.080 Sum_probs=211.7
Q ss_pred CceEEEEeccCCeeEeEE------EeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEE
Q psy988 2 DKTVRLWHISRKECLCCF------QHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANF 75 (408)
Q Consensus 2 Dg~i~vwd~~~~~~~~~~------~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~ 75 (408)
|+.|++||+.+++.+... .|.+.|.+++|+| ++.++++++.|+.|++||+++++.. ..+..|...+.+++|
T Consensus 143 ~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~s~~~d~~v~~~d~~~~~~~--~~~~~~~~~~~~~~~ 219 (433)
T 3bws_A 143 DEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPE-HNELWVSQMQANAVHVFDLKTLAYK--ATVDLTGKWSKILLY 219 (433)
T ss_dssp SSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGG-GTEEEEEEGGGTEEEEEETTTCCEE--EEEECSSSSEEEEEE
T ss_pred CCeEEEEECCCCeEeeecCcccccccCCceeEEEEcC-CCEEEEEECCCCEEEEEECCCceEE--EEEcCCCCCeeEEEE
Confidence 678999999999888743 2888999999999 9999999999999999999988766 567788889999999
Q ss_pred ecCCCEEEEEe-cCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEee--------CCCeEEEEEc
Q psy988 76 CENGKFAVVGS-YDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTS--------NDSRIRLYDL 146 (408)
Q Consensus 76 ~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--------~dg~i~i~d~ 146 (408)
+|+++++++++ .++.|++||+++++...... ....+.+++|+|+++.+++++ .|+.|++||+
T Consensus 220 ~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~---------~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~ 290 (433)
T 3bws_A 220 DPIRDLVYCSNWISEDISVIDRKTKLEIRKTD---------KIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSM 290 (433)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTTTEEEEECC---------CCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEET
T ss_pred cCCCCEEEEEecCCCcEEEEECCCCcEEEEec---------CCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEEC
Confidence 99999885554 79999999999876533321 123589999999999999987 4889999999
Q ss_pred cCcccceeecCccccccceEEEEecCCCEE-EEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeC
Q psy988 147 RDLNLSCKYKGYVNVSSQIKASFSHDGKYI-VSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAP 225 (408)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 225 (408)
++++....+.. ...+..++|+|+++.+ ++++.++.|++||+.++.... .+ .+...+.+++|+|
T Consensus 291 ~~~~~~~~~~~---~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~------------~~-~~~~~~~~~~~s~ 354 (433)
T 3bws_A 291 DKEKLIDTIGP---PGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQK------------SI-PVFDKPNTIALSP 354 (433)
T ss_dssp TTTEEEEEEEE---EECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEE------------EE-ECSSSEEEEEECT
T ss_pred CCCcEEeeccC---CCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEE------------Ee-cCCCCCCeEEEcC
Confidence 98877665432 2246789999999765 556889999999997643221 11 2345567788888
Q ss_pred CcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCC
Q psy988 226 CPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHD 305 (408)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~ 305 (408)
+++.+++........ ...++++++.||.|++||+.+++....+..+ ..+.+++|+|+
T Consensus 355 dg~~l~~~~~~~~~~--------------------~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~---~~~~~~~~s~d 411 (433)
T 3bws_A 355 DGKYLYVSCRGPNHP--------------------TEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG---NQPTGLDVSPD 411 (433)
T ss_dssp TSSEEEEEECCCCCT--------------------TTCTTSCCSSCCEEEEEETTTTEEEEEEECS---SSEEEEEECTT
T ss_pred CCCEEEEEecCCCcc--------------------ccccccccccceEEEEEECCCCcEEEEecCC---CCCceEEEcCC
Confidence 877665443221110 2234556677899999999999988887763 25789999999
Q ss_pred CCEEEEecC-CceEEEeeccc
Q psy988 306 GKYIVSGSE-NQCIYIWKTHH 325 (408)
Q Consensus 306 ~~~l~~~~~-dg~i~iw~~~~ 325 (408)
|++|++++. |+.|++|+++.
T Consensus 412 g~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 412 NRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp SCEEEEEETTTTEEEEEEETT
T ss_pred CCEEEEEECCCCeEEEEEecC
Confidence 999988764 99999999863
No 127
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=6.1e-31 Score=254.20 Aligned_cols=352 Identities=11% Similarity=0.068 Sum_probs=253.7
Q ss_pred ceEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEEeCC------CcEEEEecCCCCceeeeeecCCceee------
Q psy988 3 KTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLD------GKLRLWNIPDKKVAVWNEVEGQTKLI------ 70 (408)
Q Consensus 3 g~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~d------g~i~iw~~~~~~~~~~~~~~~~~~~v------ 70 (408)
+.|++|++.+++......|...+.+++||| ||++||+++.+ ..|++|++.+++. ..+..|...+
T Consensus 33 ~~l~~~~~~gg~~~~lt~~~~~v~~~~~SP-DG~~la~~s~~~~~~~~~~i~~~d~~~g~~---~~lt~~~~~~~~~~~~ 108 (1045)
T 1k32_A 33 DDLWEHDLKSGSTRKIVSNLGVINNARFFP-DGRKIAIRVMRGSSLNTADLYFYNGENGEI---KRITYFSGKSTGRRMF 108 (1045)
T ss_dssp TEEEEEETTTCCEEEEECSSSEEEEEEECT-TSSEEEEEEEESTTCCEEEEEEEETTTTEE---EECCCCCEEEETTEEC
T ss_pred CcEEEEECCCCcEEEeeeCCCcccCeEECC-CCCEEEEEEeeccCCCCCeEEEEECCCCCe---EEcccCCCcccccccc
Confidence 579999999998887777999999999999 99999988654 3799999988763 4778888888
Q ss_pred -EEEEEecCCCEEEEEecC------CEEEEEeccCCeeeEEEEE------------------------------------
Q psy988 71 -TAANFCENGKFAVVGSYD------GRCIFYTTDQLKYHTQIHV------------------------------------ 107 (408)
Q Consensus 71 -~~~~~~~~~~~l~~~~~d------g~i~iw~~~~~~~~~~~~~------------------------------------ 107 (408)
..++|+|||+.+++++.+ ..|.+|++.++........
T Consensus 109 ~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw 188 (1045)
T 1k32_A 109 TDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIW 188 (1045)
T ss_dssp SEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEE
T ss_pred cccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEE
Confidence 999999999977777644 4688888776543210000
Q ss_pred -e----eccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccC-cccceeecCccccccceEEEEecCCCEEEEeec
Q psy988 108 -R----STRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRD-LNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSE 181 (408)
Q Consensus 108 -~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 181 (408)
. .......|...+.++.|+++ ..+++++.++.+.+|.+.. +.....+..+.. +...+|+|+|++|+.+ .
T Consensus 189 ~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~---~~~~~~SpDG~~la~~-~ 263 (1045)
T 1k32_A 189 IEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTD---YYPRHLNTDGRRILFS-K 263 (1045)
T ss_dssp EEEETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCCS---SCEEEEEESSSCEEEE-E
T ss_pred EECCCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCCC---cceeeEcCCCCEEEEE-e
Confidence 0 00011345667888899887 5566677788899998763 333444444332 4457999999999887 5
Q ss_pred CceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEe-CCcceeeeecCCC-----CCCCceeeecCCCc-eee
Q psy988 182 NQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFA-PCPELIIAQMEPD-----KSESTGYVLNATGR-KIS 254 (408)
Q Consensus 182 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-~i~ 254 (408)
++.|++||+...... ...............+...+.+++|+ |+|+.+++..... ........+..+.. .+.
T Consensus 264 ~~~i~~~d~~~~~l~--~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 341 (1045)
T 1k32_A 264 GGSIYIFNPDTEKIE--KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKVPEPLRIRYV 341 (1045)
T ss_dssp TTEEEEECTTTCCEE--ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETTEEEEECTTSSBEEECSCCSCEEEE
T ss_pred CCEEEEecCCceEee--eeccCcccccccccccccccceeeecCCCCCEEEEEEcCEEEEEcCCCCceEEccCCCcceEE
Confidence 889999998432111 11111111111122345568899999 9999988765220 01122223445555 899
Q ss_pred eeccCCCCCeEEEecCCCeEE-EEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCcccccc
Q psy988 255 GIEPMPGEDKILVTSNDSRIR-LYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSV 333 (408)
Q Consensus 255 ~~~~~~~~~~l~~~~~d~~i~-i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 333 (408)
.++|+ ||+.|++++.++.+. +||+.+++... +..+ ...+..++|+|||++|++++.++.|++||+.++
T Consensus 342 ~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~--~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg------- 410 (1045)
T 1k32_A 342 RRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK-FEEN--LGNVFAMGVDRNGKFAVVANDRFEIMTVDLETG------- 410 (1045)
T ss_dssp EECSS-SEEEEEEEETTEEEEEEEETTTCCEEE-CCCC--CCSEEEEEECTTSSEEEEEETTSEEEEEETTTC-------
T ss_pred eeeEc-CCCeEEEEECCCceEEEEECCCCCceE-ecCC--ccceeeeEECCCCCEEEEECCCCeEEEEECCCC-------
Confidence 99999 999999988888898 99998776543 3333 346789999999999999999999999999886
Q ss_pred ccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCC----------eEEEEeCCCCC
Q psy988 334 RRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNG----------VIRVFLNKTKP 397 (408)
Q Consensus 334 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg----------~v~iw~~~~~~ 397 (408)
+......+|...+.+++|+| ||++|++++.++ .|++||+.+++
T Consensus 411 -----~~~~~~~~~~~~v~~~~~Sp----------------DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~ 463 (1045)
T 1k32_A 411 -----KPTVIERSREAMITDFTISD----------------NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK 463 (1045)
T ss_dssp -----CEEEEEECSSSCCCCEEECT----------------TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred -----ceEEeccCCCCCccceEECC----------------CCCeEEEEecCccccccCCCCCeEEEEECCCCc
Confidence 34444557888999999999 899998887654 89999998765
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=100.00 E-value=1.1e-31 Score=232.97 Aligned_cols=275 Identities=11% Similarity=0.104 Sum_probs=203.1
Q ss_pred eEEEEec--cCCeeEeE--EE-eCCceEEEEEcCC-------------CCCEEEEEeCC------CcEEEEecCCCCcee
Q psy988 4 TVRLWHI--SRKECLCC--FQ-HIDFVTAICFHPR-------------DDRYFLSGSLD------GKLRLWNIPDKKVAV 59 (408)
Q Consensus 4 ~i~vwd~--~~~~~~~~--~~-h~~~v~~~~~sp~-------------~~~~l~t~~~d------g~i~iw~~~~~~~~~ 59 (408)
+|+|||+ .+++++.. +. |...+..+++++. .+..++.++.+ +.|++||++++..
T Consensus 94 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~-- 171 (415)
T 2hqs_A 94 AYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQ-- 171 (415)
T ss_dssp EEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCSC--
T ss_pred EEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCCC--
Confidence 8999999 88887733 44 8888888887741 15667776654 7999999986543
Q ss_pred eeeecCCceeeEEEEEecCCCEEEEEecCC---EEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEE-Ee
Q psy988 60 WNEVEGQTKLITAANFCENGKFAVVGSYDG---RCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKIL-VT 135 (408)
Q Consensus 60 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~ 135 (408)
..+..|...+.+++|+|+|++|++++.++ .|++||+.+++... + . .+...+.+++|+|+++.|+ ++
T Consensus 172 -~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~-l--~------~~~~~~~~~~~spdg~~la~~~ 241 (415)
T 2hqs_A 172 -FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-V--A------SFPRHNGAPAFSPDGSKLAFAL 241 (415)
T ss_dssp -EEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE-E--E------CCSSCEEEEEECTTSSEEEEEE
T ss_pred -EEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEE-e--e------cCCCcccCEEEcCCCCEEEEEE
Confidence 46777889999999999999999999885 99999999876532 1 1 2345799999999999888 55
Q ss_pred eCCC--eEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeec-Cc--eEEEeeeccceeeeeecccCCCccccc
Q psy988 136 SNDS--RIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSE-NQ--CIYIWKTHHDYAKFSSVRRDRNDFWEG 210 (408)
Q Consensus 136 ~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~ 210 (408)
+.++ .|++||+++++. ..+..+. ..+.+++|+|+|++|++++. ++ .|++||+.++.. ..
T Consensus 242 ~~~g~~~i~~~d~~~~~~-~~l~~~~--~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-------------~~ 305 (415)
T 2hqs_A 242 SKTGSLNLYVMDLASGQI-RQVTDGR--SNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-------------QR 305 (415)
T ss_dssp CTTSSCEEEEEETTTCCE-EECCCCS--SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-------------EE
T ss_pred ecCCCceEEEEECCCCCE-EeCcCCC--CcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-------------EE
Confidence 5554 499999988765 3444443 34778999999999988876 45 677777754321 11
Q ss_pred cccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecC---CCeEEEEEcCCCeeeeE
Q psy988 211 IKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSN---DSRIRLYDLRDLNLSCK 287 (408)
Q Consensus 211 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---d~~i~i~d~~~~~~~~~ 287 (408)
+..+...+ ..++|+|+|++|++++. +..|++||+.+++.. .
T Consensus 306 l~~~~~~~-----------------------------------~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~ 349 (415)
T 2hqs_A 306 ITWEGSQN-----------------------------------QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-V 349 (415)
T ss_dssp CCCSSSEE-----------------------------------EEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-E
T ss_pred EecCCCcc-----------------------------------cCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-E
Confidence 12222333 44555555666666554 368999999988763 3
Q ss_pred EeeccceeceeEEEEcCCCCEEEEecCCc---eEEEeeccccCccccccccCccccceeeeeeccceEEEEecC
Q psy988 288 YKGYVNVSSQIKASFSHDGKYIVSGSENQ---CIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAP 358 (408)
Q Consensus 288 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 358 (408)
+..+ . .+.+++|+|||++|++++.++ .|++||+.. .....+..|.+.|.+++|+|
T Consensus 350 l~~~-~--~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g-------------~~~~~l~~~~~~v~~~~~~~ 407 (415)
T 2hqs_A 350 LSST-F--LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDG-------------RFKARLPATDGQVKFPAWSP 407 (415)
T ss_dssp CCCS-S--SCEEEEECTTSSEEEEEEEETTEEEEEEEETTS-------------CCEEECCCSSSEEEEEEECC
T ss_pred ecCC-C--CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCC-------------CcEEEeeCCCCCCcCCcccc
Confidence 4333 2 678899999999999888776 799999875 35667888999999999999
No 129
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.97 E-value=1.9e-29 Score=225.24 Aligned_cols=294 Identities=12% Similarity=0.082 Sum_probs=218.6
Q ss_pred EEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeec-CCceeeEEEEEecCCCEEEEEecCCEEEEEec--cCCeeeEEE
Q psy988 29 CFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVE-GQTKLITAANFCENGKFAVVGSYDGRCIFYTT--DQLKYHTQI 105 (408)
Q Consensus 29 ~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~--~~~~~~~~~ 105 (408)
.|+| ++.++++++.|++|.+||..++++. ..+. ++. +..++|+|+|++|++++.|+.|.+||+ .+.+....+
T Consensus 144 ~~~p-~~~~~vs~~~d~~V~v~D~~t~~~~--~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i 218 (543)
T 1nir_A 144 DLDL-PNLFSVTLRDAGQIALVDGDSKKIV--KVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEI 218 (543)
T ss_dssp CCCG-GGEEEEEEGGGTEEEEEETTTCCEE--EEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred ccCC-CCEEEEEEcCCCeEEEEECCCceEE--EEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEE
Confidence 4889 8899999999999999999998876 5565 443 889999999999999999999999999 676654433
Q ss_pred EEeeccccccCCCCeEEEeeCC----CCCeEEEeeC-CCeEEEEEccCcccceeecCcc---------ccccceEEEEec
Q psy988 106 HVRSTRGKNATGRKISGIEPMP----GEDKILVTSN-DSRIRLYDLRDLNLSCKYKGYV---------NVSSQIKASFSH 171 (408)
Q Consensus 106 ~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~---------~~~~~~~~~~~~ 171 (408)
. +...+..++|+| +++++++++. ++.|.+||..+++++..+.... ....+..+.++|
T Consensus 219 ~---------~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~ 289 (543)
T 1nir_A 219 K---------IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASH 289 (543)
T ss_dssp E---------CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECS
T ss_pred e---------cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECC
Confidence 2 124678999999 9999999874 8999999999998887775432 112467889999
Q ss_pred CCCE-EEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCC
Q psy988 172 DGKY-IVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATG 250 (408)
Q Consensus 172 ~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (408)
++.. +++...++.|.+||..+.... .+..+ .+.
T Consensus 290 ~~~~~~vs~~~~g~i~vvd~~~~~~l--------------------~~~~i--------------------------~~~ 323 (543)
T 1nir_A 290 EHPEFIVNVKETGKVLLVNYKDIDNL--------------------TVTSI--------------------------GAA 323 (543)
T ss_dssp SSSEEEEEETTTTEEEEEECTTSSSC--------------------EEEEE--------------------------ECC
T ss_pred CCCEEEEEECCCCeEEEEEecCCCcc--------------------eeEEe--------------------------ccC
Confidence 7765 556667899999998643110 00000 122
Q ss_pred ceeeeeccCCCCCeEEEe-cCCCeEEEEEcCCCeeeeEEeecc--ceeceeEEEEcCC-CCEEEEec-CCceEEEeeccc
Q psy988 251 RKISGIEPMPGEDKILVT-SNDSRIRLYDLRDLNLSCKYKGYV--NVSSQIKASFSHD-GKYIVSGS-ENQCIYIWKTHH 325 (408)
Q Consensus 251 ~~i~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~--~~~~v~~~~~s~~-~~~l~~~~-~dg~i~iw~~~~ 325 (408)
..+..+.|+|++++++++ ..+++|.+||+.++++...+.... +......+ ++|+ +..++++. .|++|.+||+.+
T Consensus 324 ~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~ 402 (543)
T 1nir_A 324 PFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDP 402 (543)
T ss_dssp SSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred cCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCC
Confidence 345567778888876654 568999999999999988887421 11122222 4677 66667765 689999999987
Q ss_pred cCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEe-------cCCeEEEEeCCCCCC
Q psy988 326 DYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSAD-------FNGVIRVFLNKTKPK 398 (408)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~-------~dg~v~iw~~~~~~~ 398 (408)
... +...+++++++.+|.+.+..++|+| ++++|++++ .+++|.+||+.+++.
T Consensus 403 ~~~-----~~~~~~~v~~l~~~g~~~~~v~~~p----------------dg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~ 461 (543)
T 1nir_A 403 KNH-----PQYAWKKVAELQGQGGGSLFIKTHP----------------KSSHLYVDTTFNPDARISQSVAVFDLKNLDA 461 (543)
T ss_dssp TTC-----TTTBTSEEEEEECSCSCCCCEECCT----------------TCCEEEECCTTCSSHHHHTCEEEEETTCTTS
T ss_pred CCC-----chhcCeEEEEEEcCCCCceEEEcCC----------------CCCcEEEecCCCCCcccCceEEEEECCCCCC
Confidence 311 1122378888999988899999999 899999987 378999999999987
Q ss_pred c-ccccc
Q psy988 399 H-SSLPV 404 (408)
Q Consensus 399 ~-~~~~~ 404 (408)
. ..+++
T Consensus 462 ~~~~~~v 468 (543)
T 1nir_A 462 KYQVLPI 468 (543)
T ss_dssp CCEEECH
T ss_pred CeEEeec
Confidence 6 55543
No 130
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.97 E-value=1.2e-29 Score=220.08 Aligned_cols=282 Identities=14% Similarity=0.111 Sum_probs=201.7
Q ss_pred CceEEEEEcCCCCCEEEEEe----CCC----cEEEEec--CCCCceeeeeecCCceeeEEEEEec--------------C
Q psy988 23 DFVTAICFHPRDDRYFLSGS----LDG----KLRLWNI--PDKKVAVWNEVEGQTKLITAANFCE--------------N 78 (408)
Q Consensus 23 ~~v~~~~~sp~~~~~l~t~~----~dg----~i~iw~~--~~~~~~~~~~~~~~~~~v~~~~~~~--------------~ 78 (408)
..+...+|.+.+.+++++|+ .|| +|+|||+ .+++.+....+.+|...+..+++++ .
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~ 142 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAF 142 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcC
Confidence 46677788885556777886 467 8999999 8888665456888888888777765 1
Q ss_pred CCEEEEEecC------CEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCC---eEEEEEccCc
Q psy988 79 GKFAVVGSYD------GRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDS---RIRLYDLRDL 149 (408)
Q Consensus 79 ~~~l~~~~~d------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~ 149 (408)
+..++.++.+ +.|++||++.... ..+. .|...+.+++|+|+++.|++++.++ .|++||++++
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~-~~l~--------~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg 213 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQ-FVVH--------RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG 213 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSCSC-EEEE--------EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCCCC-EEEe--------CCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCC
Confidence 5667766664 7999999986442 2221 2346899999999999999998875 9999999988
Q ss_pred ccceeecCccccccceEEEEecCCCEEE-EeecCc--eEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCC
Q psy988 150 NLSCKYKGYVNVSSQIKASFSHDGKYIV-SGSENQ--CIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPC 226 (408)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 226 (408)
+... +..+. ..+.+++|+|||++|+ +++.++ .|++||+.++.. ..+..+...+.+
T Consensus 214 ~~~~-l~~~~--~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-------------~~l~~~~~~~~~------ 271 (415)
T 2hqs_A 214 AVRQ-VASFP--RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-------------RQVTDGRSNNTE------ 271 (415)
T ss_dssp CEEE-EECCS--SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-------------EECCCCSSCEEE------
T ss_pred cEEE-eecCC--CcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-------------EeCcCCCCcccc------
Confidence 7653 44333 3477899999999888 555555 499999865321 122233334444
Q ss_pred cceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecC-CC--eEEEEEcCCCeeeeEEeeccceeceeEEEEc
Q psy988 227 PELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSN-DS--RIRLYDLRDLNLSCKYKGYVNVSSQIKASFS 303 (408)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s 303 (408)
++|+|||++|++++. ++ .|++||+.+++.. .+..+. ..+.+++|+
T Consensus 272 -----------------------------~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~-~l~~~~--~~~~~~~~s 319 (415)
T 2hqs_A 272 -----------------------------PTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEG--SQNQDADVS 319 (415)
T ss_dssp -----------------------------EEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCCSS--SEEEEEEEC
T ss_pred -----------------------------eEECCCCCEEEEEECCCCCcEEEEEECCCCCEE-EEecCC--CcccCeEEC
Confidence 455555555666554 44 6888899887643 333332 367789999
Q ss_pred CCCCEEEEecCC---ceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEE
Q psy988 304 HDGKYIVSGSEN---QCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLV 380 (408)
Q Consensus 304 ~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 380 (408)
|||++|++++.+ ..|++||+.++. . ..+..|. .+.+++|+| +|++|+
T Consensus 320 pdG~~l~~~~~~~g~~~i~~~d~~~~~------------~-~~l~~~~-~~~~~~~sp----------------dg~~l~ 369 (415)
T 2hqs_A 320 SDGKFMVMVSSNGGQQHIAKQDLATGG------------V-QVLSSTF-LDETPSLAP----------------NGTMVI 369 (415)
T ss_dssp TTSSEEEEEEECSSCEEEEEEETTTCC------------E-EECCCSS-SCEEEEECT----------------TSSEEE
T ss_pred CCCCEEEEEECcCCceEEEEEECCCCC------------E-EEecCCC-CcCCeEEcC----------------CCCEEE
Confidence 999999988764 689999998752 2 3344454 789999999 999999
Q ss_pred EEecCC---eEEEEeCCCCC
Q psy988 381 SADFNG---VIRVFLNKTKP 397 (408)
Q Consensus 381 s~~~dg---~v~iw~~~~~~ 397 (408)
+++.|+ .|++||+..+.
T Consensus 370 ~~s~~~~~~~l~~~d~~g~~ 389 (415)
T 2hqs_A 370 YSSSQGMGSVLNLVSTDGRF 389 (415)
T ss_dssp EEEEETTEEEEEEEETTSCC
T ss_pred EEEcCCCccEEEEEECCCCc
Confidence 888877 79999987543
No 131
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.97 E-value=2.3e-28 Score=229.03 Aligned_cols=320 Identities=10% Similarity=0.002 Sum_probs=223.0
Q ss_pred CCceEEEEEcCCCCCEEEEEeC-CC-----cEEEEecCCCCceeeeeecCCc----------------------eeeEEE
Q psy988 22 IDFVTAICFHPRDDRYFLSGSL-DG-----KLRLWNIPDKKVAVWNEVEGQT----------------------KLITAA 73 (408)
Q Consensus 22 ~~~v~~~~~sp~~~~~l~t~~~-dg-----~i~iw~~~~~~~~~~~~~~~~~----------------------~~v~~~ 73 (408)
...|.+++||| ||++|++++. |+ .|++||+.+++.........+. ..+.++
T Consensus 36 ~~~~~~~~~Sp-dG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 36 GPTLMKPKVAP-DGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCCEEEEECT-TSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred CCCCCCceEec-CCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence 45699999999 9999999998 88 8999999998765322222222 348899
Q ss_pred EEecCCCEEEEEecCCEEEEEeccCC---eeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcc
Q psy988 74 NFCENGKFAVVGSYDGRCIFYTTDQL---KYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLN 150 (408)
Q Consensus 74 ~~~~~~~~l~~~~~dg~i~iw~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 150 (408)
+|+|||++|++++. +.|.+||+.++ ... ....+...+..++|+|||++|++++. +.|++||+.+++
T Consensus 115 ~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~---------~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~ 183 (741)
T 2ecf_A 115 QWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR---------QLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGR 183 (741)
T ss_dssp EECTTSSEEEEEET-TEEEEEESSSCSTTSCC---------BCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTE
T ss_pred EECCCCCEEEEEeC-CcEEEEECCCCCcceEE---------EcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCC
Confidence 99999999999886 99999999876 321 11233467999999999999999875 689999999877
Q ss_pred cceeecCcccc--------------ccceEEEEecCCCEEEEeecCc---------------------------------
Q psy988 151 LSCKYKGYVNV--------------SSQIKASFSHDGKYIVSGSENQ--------------------------------- 183 (408)
Q Consensus 151 ~~~~~~~~~~~--------------~~~~~~~~~~~~~~l~~~~~dg--------------------------------- 183 (408)
........... ..+..+.|+|||++|++++.|+
T Consensus 184 ~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~ 263 (741)
T 2ecf_A 184 QMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQV 263 (741)
T ss_dssp EEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEE
T ss_pred EEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCee
Confidence 65443332210 0135689999999999987765
Q ss_pred eEEEeeecc-ceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCC------------CCCceeeecCCC
Q psy988 184 CIYIWKTHH-DYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDK------------SESTGYVLNATG 250 (408)
Q Consensus 184 ~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~ 250 (408)
.|++||+.+ +..... .....+...+..++| |||+.+++...... ......+...+.
T Consensus 264 ~l~~~d~~~~~~~~~~----------~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~ 332 (741)
T 2ecf_A 264 KLGVISPAEQAQTQWI----------DLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETS 332 (741)
T ss_dssp EEEEECSSTTCCCEEE----------CCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEEC
T ss_pred EEEEEECCCCCceEEe----------cCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCC
Confidence 788888765 432111 001246778999999 99999986543111 111122222222
Q ss_pred c----eeeeeccCCCCCeEEEecCCCeEEEEEcC-CCeeeeEEeeccceeceeEE-EEcCCCCEEEE-ecCCc--eEEEe
Q psy988 251 R----KISGIEPMPGEDKILVTSNDSRIRLYDLR-DLNLSCKYKGYVNVSSQIKA-SFSHDGKYIVS-GSENQ--CIYIW 321 (408)
Q Consensus 251 ~----~i~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~v~~~-~~s~~~~~l~~-~~~dg--~i~iw 321 (408)
. .+..++|+|||+++++++.++.++||.+. +++ ...+..+.. .+..+ .|+|+|+.|+. ++.++ .++||
T Consensus 333 ~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~--~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~ 409 (741)
T 2ecf_A 333 PTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNW--SVDELLAVDEKAGLAYFRAGIESARESQIY 409 (741)
T ss_dssp SSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSS--CEEEEEEEETTTTEEEEEECSSCTTCBEEE
T ss_pred CCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecce--EEEeEeEEeCCCCEEEEEEeCCCCceEEEE
Confidence 1 34689999999999999999988888765 344 555554433 56666 59999997764 55555 89999
Q ss_pred eccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecC----CeEEEEeCCC
Q psy988 322 KTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFN----GVIRVFLNKT 395 (408)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d----g~v~iw~~~~ 395 (408)
++.... .....+.. ...+..++|+| ||++|+....+ +.+.+|+...
T Consensus 410 ~~~~~g-----------~~~~~l~~-~~~~~~~~~sp----------------dg~~l~~~~~~~~~p~~~~l~~~~~ 459 (741)
T 2ecf_A 410 AVPLQG-----------GQPQRLSK-APGMHSASFAR----------------NASVYVDSWSNNSTPPQIELFRANG 459 (741)
T ss_dssp EEETTC-----------CCCEECCC-SCSEEEEEECT----------------TSSEEEEEEEETTEEEEEEEEETTS
T ss_pred EEEcCC-----------CCeeeccc-CCCceEEEECC----------------CCCEEEEEecCCCCCCeEEEEEcCC
Confidence 987521 22333443 55678999999 78777765433 5688888754
No 132
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.97 E-value=7.7e-29 Score=230.92 Aligned_cols=313 Identities=10% Similarity=0.018 Sum_probs=209.1
Q ss_pred CceEEEEeccCCee--EeEEEeC-----------------CceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeee
Q psy988 2 DKTVRLWHISRKEC--LCCFQHI-----------------DFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNE 62 (408)
Q Consensus 2 Dg~i~vwd~~~~~~--~~~~~h~-----------------~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~ 62 (408)
|+ | +||+.+++. ...+.|. ..|.+++||| + ..++.+. ++.|++||+.+++.. .
T Consensus 44 ~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~sp-d-~~~~~~~-~~~i~~~d~~~~~~~---~ 115 (706)
T 2z3z_A 44 DD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAG-R-GLVVLFT-QGGLVGFDMLARKVT---Y 115 (706)
T ss_dssp TE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETT-T-TEEEEEE-TTEEEEEETTTTEEE---E
T ss_pred Cc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECC-C-CeEEEEE-CCEEEEEECCCCceE---E
Confidence 45 8 999999988 5555544 5699999999 7 5555553 599999999887654 4
Q ss_pred ecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccC-----CeeeEEEEEeecc------ccccCCCCeEEEeeCCCCCe
Q psy988 63 VEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQ-----LKYHTQIHVRSTR------GKNATGRKISGIEPMPGEDK 131 (408)
Q Consensus 63 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~-----~~~~~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~ 131 (408)
+..+...+.+++|+|||++|+++ .++.|++|++.+ ++........... ....+...+.++.|+||+++
T Consensus 116 l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~ 194 (706)
T 2z3z_A 116 LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSC 194 (706)
T ss_dssp EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSE
T ss_pred ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCE
Confidence 45566778899999999999985 789999999987 5532211100000 00001123588999999999
Q ss_pred EEEee---------------------------------CCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEE
Q psy988 132 ILVTS---------------------------------NDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVS 178 (408)
Q Consensus 132 l~~~~---------------------------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 178 (408)
|++++ .+..|++||+.+++.............+..++|+|||++|++
T Consensus 195 la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~ 274 (706)
T 2z3z_A 195 LAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYV 274 (706)
T ss_dssp EEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEE
T ss_pred EEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEE
Confidence 99987 446799999998876544433223344778999999999999
Q ss_pred eecCc-----eEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCcee
Q psy988 179 GSENQ-----CIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKI 253 (408)
Q Consensus 179 ~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 253 (408)
++.++ .|++||+.++..... +.-.... .....+
T Consensus 275 ~~~~~~~~~~~v~~~d~~~g~~~~~----------------------~~~~~~~--------------------~~~~~~ 312 (706)
T 2z3z_A 275 AEVNRAQNECKVNAYDAETGRFVRT----------------------LFVETDK--------------------HYVEPL 312 (706)
T ss_dssp EEECTTSCEEEEEEEETTTCCEEEE----------------------EEEEECS--------------------SCCCCC
T ss_pred EEeCCCCCeeEEEEEECCCCceeeE----------------------EEEccCC--------------------CeECcc
Confidence 87765 899999875411100 0000000 000123
Q ss_pred eeeccCC--CCCeEEEecCCCeEEEEEcC-CCeeeeEEeeccceeceeE-EEEcCCCCEEEEec-CCc----eEEEeecc
Q psy988 254 SGIEPMP--GEDKILVTSNDSRIRLYDLR-DLNLSCKYKGYVNVSSQIK-ASFSHDGKYIVSGS-ENQ----CIYIWKTH 324 (408)
Q Consensus 254 ~~~~~~~--~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~-~dg----~i~iw~~~ 324 (408)
..++|+| ||++++++..++.+++|++. +++....+..+.. .+.. ++|+|+|+.|+.++ .++ .|+.|++.
T Consensus 313 ~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~--~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~ 390 (706)
T 2z3z_A 313 HPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEW--EVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIK 390 (706)
T ss_dssp SCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSS--CEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETT
T ss_pred CCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCe--EEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcC
Confidence 4577888 88888889999999999876 5666666655432 4555 79999999886554 444 56666665
Q ss_pred ccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecC----CeEEEEeCCCCC
Q psy988 325 HDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFN----GVIRVFLNKTKP 397 (408)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d----g~v~iw~~~~~~ 397 (408)
++. ...+. |...+.+++|+| ||++|+....+ +.|++||+.+++
T Consensus 391 ~~~-------------~~~l~-~~~~~~~~~~sp----------------dg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 391 GGK-------------TKDLT-PESGMHRTQLSP----------------DGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp CCC-------------CEESC-CSSSEEEEEECT----------------TSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred CCC-------------ceecc-CCCceEEEEECC----------------CCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 541 22222 566789999999 88888766443 569999998765
No 133
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.97 E-value=1.4e-28 Score=237.77 Aligned_cols=334 Identities=11% Similarity=0.040 Sum_probs=241.7
Q ss_pred ceEEEEeccCCeeEeEEEeCCce-------EEEEEcCCCCCEEEEEeCC------CcEEEEecCCCCcee----------
Q psy988 3 KTVRLWHISRKECLCCFQHIDFV-------TAICFHPRDDRYFLSGSLD------GKLRLWNIPDKKVAV---------- 59 (408)
Q Consensus 3 g~i~vwd~~~~~~~~~~~h~~~v-------~~~~~sp~~~~~l~t~~~d------g~i~iw~~~~~~~~~---------- 59 (408)
..|++||+.+++......|...+ .+++|+| |++++++++.+ ..|.+|++.++....
T Consensus 80 ~~i~~~d~~~g~~~~lt~~~~~~~~~~~~~~~~~~Sp-Dg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~ 158 (1045)
T 1k32_A 80 ADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDP-DGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHIL 158 (1045)
T ss_dssp EEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECT-TCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEE
T ss_pred CeEEEEECCCCCeEEcccCCCcccccccccccccCCC-CCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceee
Confidence 47999999998866555688888 9999999 88877777754 357788876554221
Q ss_pred -------------------------------------eeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCe-e
Q psy988 60 -------------------------------------WNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLK-Y 101 (408)
Q Consensus 60 -------------------------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-~ 101 (408)
...+.+|...+.++.|+++ .++++++.++.+.+|.+.... .
T Consensus 159 ~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~ 237 (1045)
T 1k32_A 159 FADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKD 237 (1045)
T ss_dssp EETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCS
T ss_pred eCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCc
Confidence 0123456677888889887 666777788888888765321 1
Q ss_pred eEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCcc---------ccccceEEEEe-c
Q psy988 102 HTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV---------NVSSQIKASFS-H 171 (408)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---------~~~~~~~~~~~-~ 171 (408)
...+ . .+ ..+...+|+|+++.++++. ++.|++||+.... +..+..+. ....+..++|+ |
T Consensus 238 ~~~l-----~---~~-~~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~p 306 (1045)
T 1k32_A 238 LRKH-----T---SF-TDYYPRHLNTDGRRILFSK-GGSIYIFNPDTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPL 306 (1045)
T ss_dssp CEEC-----C---CC-CSSCEEEEEESSSCEEEEE-TTEEEEECTTTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEEC
T ss_pred ceEe-----c---CC-CCcceeeEcCCCCEEEEEe-CCEEEEecCCceE-eeeeccCcccccccccccccccceeeecCC
Confidence 1111 1 11 1356679999999998884 7899999995433 33433321 11246789999 9
Q ss_pred CCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccc-eEEEEEEeCCcceeeeecCCCC-------CCCce
Q psy988 172 DGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNA-VVTCAVFAPCPELIIAQMEPDK-------SESTG 243 (408)
Q Consensus 172 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~-------~~~~~ 243 (408)
+|++|++++ ++.+++|+...+.. ..+..+.. .+..++|+ +++.++....... .....
T Consensus 307 dG~~la~~~-~~~i~~~~~~~~~~-------------~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~ 371 (1045)
T 1k32_A 307 DGDLIAFVS-RGQAFIQDVSGTYV-------------LKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKA 371 (1045)
T ss_dssp GGGCEEEEE-TTEEEEECTTSSBE-------------EECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCE
T ss_pred CCCEEEEEE-cCEEEEEcCCCCce-------------EEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCc
Confidence 999999887 78999999865421 12344555 78899999 9988776433110 01111
Q ss_pred eeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCC--------
Q psy988 244 YVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSEN-------- 315 (408)
Q Consensus 244 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-------- 315 (408)
..+..+...+..++|+|||++|++++.++.|++||+.+++.......+.. .+..++|||||++|++++.+
T Consensus 372 ~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~--~v~~~~~SpDG~~la~~~~~~~~~~~~~ 449 (1045)
T 1k32_A 372 EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREA--MITDFTISDNSRFIAYGFPLKHGETDGY 449 (1045)
T ss_dssp EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSS--CCCCEEECTTSCEEEEEEEECSSTTCSC
T ss_pred eEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCC--CccceEECCCCCeEEEEecCccccccCC
Confidence 22235567889999999999999999999999999999988777766544 66789999999999987664
Q ss_pred --ceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeC
Q psy988 316 --QCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLN 393 (408)
Q Consensus 316 --g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~ 393 (408)
+.|++||+.++ + ...+..|...+.+++|+| ||+.|+.++.++..++|+.
T Consensus 450 ~~~~i~l~d~~~g------------~-~~~l~~~~~~~~~~~~sp----------------dG~~l~~~s~~~~~~~~~~ 500 (1045)
T 1k32_A 450 VMQAIHVYDMEGR------------K-IFAATTENSHDYAPAFDA----------------DSKNLYYLSYRSLDPSPDR 500 (1045)
T ss_dssp CEEEEEEEETTTT------------E-EEECSCSSSBEEEEEECT----------------TSCEEEEEESCCCCCEECS
T ss_pred CCCeEEEEECCCC------------c-EEEeeCCCcccCCceEcC----------------CCCEEEEEecccCCcCcch
Confidence 48999999875 2 455667888889999999 8999999998888888876
Q ss_pred CC
Q psy988 394 KT 395 (408)
Q Consensus 394 ~~ 395 (408)
..
T Consensus 501 ~~ 502 (1045)
T 1k32_A 501 VV 502 (1045)
T ss_dssp SS
T ss_pred hc
Confidence 53
No 134
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.97 E-value=1.2e-27 Score=203.32 Aligned_cols=275 Identities=15% Similarity=0.217 Sum_probs=187.5
Q ss_pred CceEEEEecc-CC--eeEeEEEeCCceEEEEEcCCCCCEEEEEeCC-CcEEEEecC--CCCceeeeeecCCceeeEEEEE
Q psy988 2 DKTVRLWHIS-RK--ECLCCFQHIDFVTAICFHPRDDRYFLSGSLD-GKLRLWNIP--DKKVAVWNEVEGQTKLITAANF 75 (408)
Q Consensus 2 Dg~i~vwd~~-~~--~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~d-g~i~iw~~~--~~~~~~~~~~~~~~~~v~~~~~ 75 (408)
|+.|++||+. ++ +.+..+.|...+.+++|+| ++++|++++.+ +.|.+|++. ++.......+..+. .+..++|
T Consensus 14 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 91 (343)
T 1ri6_A 14 SQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSP-DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHIST 91 (343)
T ss_dssp GTEEEEEEECTTSCEEEEEEEECSSCCCCEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEE
T ss_pred CCeEEEEEECCCCcEEEeeeEecCCCCceEEECC-CCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEE
Confidence 7899999995 33 4455566889999999999 99988888886 999999998 56654444555444 7889999
Q ss_pred ecCCCEEEEEec-CCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEee-CCCeEEEEEccC-cccc
Q psy988 76 CENGKFAVVGSY-DGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTS-NDSRIRLYDLRD-LNLS 152 (408)
Q Consensus 76 ~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~-~~~~ 152 (408)
+|+|++|++++. ++.|.+||+..+....... ... ....+.+++|+|+++++++++ .++.|++||+.+ ++..
T Consensus 92 s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~--~~~----~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~ 165 (343)
T 1ri6_A 92 DHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVD--VVE----GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLV 165 (343)
T ss_dssp CTTSSEEEEEETTTTEEEEEEEETTEEEEEEE--EEC----CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEE
T ss_pred cCCCCEEEEEecCCCeEEEEECCCCccccccc--ccc----CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCcee
Confidence 999998877765 8899999995332211111 111 123588899999999888887 789999999987 5433
Q ss_pred e----eecCccccccceEEEEecCCCEEEEee-cCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCc
Q psy988 153 C----KYKGYVNVSSQIKASFSHDGKYIVSGS-ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCP 227 (408)
Q Consensus 153 ~----~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 227 (408)
. .+.... ...+..++|+|+++++++++ .++.|.+|++........ ....+...|.+
T Consensus 166 ~~~~~~~~~~~-~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~------------------~~~~~~~~~~~ 226 (343)
T 1ri6_A 166 AQDPAEVTTVE-GAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIE------------------CVQTLDMMPEN 226 (343)
T ss_dssp EEEEEEEECST-TCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCE------------------EEEEEECSCTT
T ss_pred eecccccccCC-CCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEE------------------EEeeccccCcc
Confidence 2 122211 23466799999999876655 789999999853110000 00000000000
Q ss_pred ceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEE-EecCCCeEEEEEcC--CC--eeeeEEeeccceeceeEEEE
Q psy988 228 ELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKIL-VTSNDSRIRLYDLR--DL--NLSCKYKGYVNVSSQIKASF 302 (408)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~i~i~d~~--~~--~~~~~~~~~~~~~~v~~~~~ 302 (408)
......+..++|+|++++|+ +...++.|.+||+. ++ +.+..+..+. .+..++|
T Consensus 227 -------------------~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~---~~~~~~~ 284 (343)
T 1ri6_A 227 -------------------FSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTET---QPRGFNV 284 (343)
T ss_dssp -------------------CCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSS---SCCCEEE
T ss_pred -------------------ccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCC---ccceEEE
Confidence 01123455677777777666 45578999999998 32 3333343322 3678999
Q ss_pred cCCCCEEEEec-CCceEEEeeccc
Q psy988 303 SHDGKYIVSGS-ENQCIYIWKTHH 325 (408)
Q Consensus 303 s~~~~~l~~~~-~dg~i~iw~~~~ 325 (408)
+|+|++|++++ .++.|.+|+++.
T Consensus 285 s~dg~~l~~~~~~~~~v~v~~~d~ 308 (343)
T 1ri6_A 285 DHSGKYLIAAGQKSHHISVYEIVG 308 (343)
T ss_dssp CTTSSEEEEECTTTCEEEEEEEET
T ss_pred CCCCCEEEEecCCCCeEEEEEEcC
Confidence 99999888877 689999997653
No 135
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.97 E-value=2.1e-27 Score=200.83 Aligned_cols=284 Identities=10% Similarity=0.083 Sum_probs=192.9
Q ss_pred EEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEec-CCEEEEEeccCCee-eEEE
Q psy988 28 ICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSY-DGRCIFYTTDQLKY-HTQI 105 (408)
Q Consensus 28 ~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iw~~~~~~~-~~~~ 105 (408)
..|.++.+..+++++.++.|.+||..+++.. ..+..+...+ .++|+|+|+++++++. ++.|.+||..+++. ....
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~--~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~ 79 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEIL--NQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAI 79 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEE--EEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCccccee--eeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEec
Confidence 3456634555778888999999999998876 3444455566 9999999997777666 88999999998875 3222
Q ss_pred EEeeccccccCCCCeEEEeeCCCCCeEEEeeCCC---eEEEEEccCcccceeecCccccccceEEEEecCCCEEEEee-c
Q psy988 106 HVRSTRGKNATGRKISGIEPMPGEDKILVTSNDS---RIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS-E 181 (408)
Q Consensus 106 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~ 181 (408)
.. +..+..+++|+|++++++++..++ .|.+||+.+++.+..+.... .+..++|+|+|+++++++ .
T Consensus 80 ~~--------~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~---~~~~~~~spdg~~l~~~~~~ 148 (331)
T 3u4y_A 80 QE--------GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPY---DAVGIAISPNGNGLILIDRS 148 (331)
T ss_dssp EE--------CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCT---TEEEEEECTTSSCEEEEEET
T ss_pred cc--------CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCC---CccceEECCCCCEEEEEecC
Confidence 21 123444499999999999655553 89999999988777665433 256899999998766654 4
Q ss_pred Cce-EEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCC
Q psy988 182 NQC-IYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMP 260 (408)
Q Consensus 182 dg~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 260 (408)
++. |.+|++........ .. ... . .....+..++|+|
T Consensus 149 ~~~~i~~~~~~~~g~~~~----------------------~~----~~~----------------~-~~~~~~~~~~~sp 185 (331)
T 3u4y_A 149 SANTVRRFKIDADGVLFD----------------------TG----QEF----------------I-SGGTRPFNITFTP 185 (331)
T ss_dssp TTTEEEEEEECTTCCEEE----------------------EE----EEE----------------E-CSSSSEEEEEECT
T ss_pred CCceEEEEEECCCCcEee----------------------cC----Ccc----------------c-cCCCCccceEECC
Confidence 577 99999864211100 00 000 0 1223356677778
Q ss_pred CCCeEEE-ecCCCeEEEEEcCCCee---eeEEeeccceeceeEEEEcCCCCEEEEec-CCceEEEeeccccCcccccccc
Q psy988 261 GEDKILV-TSNDSRIRLYDLRDLNL---SCKYKGYVNVSSQIKASFSHDGKYIVSGS-ENQCIYIWKTHHDYAKFSSVRR 335 (408)
Q Consensus 261 ~~~~l~~-~~~d~~i~i~d~~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~ 335 (408)
+++++++ +..++.|++||+.+++. +..+... ..+..++|+|||++|++++ .++.|.+||+.++....
T Consensus 186 dg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~---~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~----- 257 (331)
T 3u4y_A 186 DGNFAFVANLIGNSIGILETQNPENITLLNAVGTN---NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSF----- 257 (331)
T ss_dssp TSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS---SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEE-----
T ss_pred CCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC---CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceee-----
Confidence 8875544 55789999999999887 6666543 3566899999999776654 57889999998763210
Q ss_pred Cccccceeeee----ec---cceEEEEecCCchhhhhccCCCCCCCcccEEEEE-ecCCeEEEEeCCCCC
Q psy988 336 DRNDFWEGIKA----HN---AVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSA-DFNGVIRVFLNKTKP 397 (408)
Q Consensus 336 ~~~~~~~~~~~----h~---~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~-~~dg~v~iw~~~~~~ 397 (408)
+..+.. +. .....++|+| ||++|+.+ ..++.|++|++....
T Consensus 258 -----~~~~~~~~~~~~~~~~~~~~~~~sp----------------dg~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 258 -----VKSFGHGLLIDPRPLFGANQMALNK----------------TETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp -----EEEEECCCCCCCGGGTTCCCEEECT----------------TSSEEEEEETTTTEEEEEETTSCE
T ss_pred -----ecccccccccCCCCcccccceEECC----------------CCCEEEEecCCCCcEEEEEecCCc
Confidence 111111 11 2235689999 88877655 456799999998754
No 136
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.97 E-value=1.2e-27 Score=202.80 Aligned_cols=290 Identities=9% Similarity=0.023 Sum_probs=207.8
Q ss_pred CceEEEEeccCCeeEeEEEeCC---ceEEEEEcCCCCCEE-EEEeCCCcEEEEecCCCCceeeeeecC---CceeeEEEE
Q psy988 2 DKTVRLWHISRKECLCCFQHID---FVTAICFHPRDDRYF-LSGSLDGKLRLWNIPDKKVAVWNEVEG---QTKLITAAN 74 (408)
Q Consensus 2 Dg~i~vwd~~~~~~~~~~~h~~---~v~~~~~sp~~~~~l-~t~~~dg~i~iw~~~~~~~~~~~~~~~---~~~~v~~~~ 74 (408)
|++|.+||+.+++.+..+.+.. .+..++|+| +++++ ++++.++.|.+||+.+++......... |...+..++
T Consensus 10 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (337)
T 1pby_B 10 PDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAP-GGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAA 88 (337)
T ss_dssp TTEEEEEETTTTEEEEEEECTTCTTCCCCEEECT-TSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEE
T ss_pred CCeEEEEECCCCcEEEEEEcCCCCCCccceEEcC-CCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceE
Confidence 7899999999999999888665 689999999 88665 555667899999999887653222221 233677899
Q ss_pred EecCCCEEEEEe------------cCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEE
Q psy988 75 FCENGKFAVVGS------------YDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIR 142 (408)
Q Consensus 75 ~~~~~~~l~~~~------------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 142 (408)
|+|+|+++++++ .++.|.+||+.+.+....... ...+.+++|+|++++++++ ++.|.
T Consensus 89 ~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~---------~~~~~~~~~s~dg~~l~~~--~~~i~ 157 (337)
T 1pby_B 89 LSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA---------PRQITMLAWARDGSKLYGL--GRDLH 157 (337)
T ss_dssp ECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC---------CSSCCCEEECTTSSCEEEE--SSSEE
T ss_pred ECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC---------CCCcceeEECCCCCEEEEe--CCeEE
Confidence 999999998886 579999999988775544321 1357788999999988888 58899
Q ss_pred EEEccCcccceeecCccccccceEEEEecCCCEEEEeecCceEE--EeeeccceeeeeecccCCCccccccccccceEEE
Q psy988 143 LYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIY--IWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTC 220 (408)
Q Consensus 143 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~--i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 220 (408)
+||+.+++....+....... .+.|+|++++++..+..+... +|....
T Consensus 158 ~~d~~~~~~~~~~~~~~~~~---~~~~s~dg~~l~~~~~~~~~~~~~~~~~~---------------------------- 206 (337)
T 1pby_B 158 VMDPEAGTLVEDKPIQSWEA---ETYAQPDVLAVWNQHESSGVMATPFYTAR---------------------------- 206 (337)
T ss_dssp EEETTTTEEEEEECSTTTTT---TTBCCCBCCCCCCCCTTTTEEEEEEEEEB----------------------------
T ss_pred EEECCCCcEeeeeeccccCC---CceeCCCccEEeeeccCCCceeeeeeccc----------------------------
Confidence 99999988776665443212 236899998877665444332 222110
Q ss_pred EEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEE
Q psy988 221 AVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKA 300 (408)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~ 300 (408)
...+... | ......|.+||+.+++.. .+........+..+
T Consensus 207 ---~~~~~~~-----------------------------~-------~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~ 246 (337)
T 1pby_B 207 ---KDIDPAD-----------------------------P-------TAYRTGLLTMDLETGEMA-MREVRIMDVFYFST 246 (337)
T ss_dssp ---TTSCTTS-----------------------------G-------GGEEEEEEEEETTTCCEE-EEEEEECSSCEEEE
T ss_pred ---ccccccc-----------------------------c-------cccccceEEEeCCCCCce-EeecCCCCCceeeE
Confidence 0000000 0 011126899999988775 33332333456789
Q ss_pred EEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEE
Q psy988 301 SFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLV 380 (408)
Q Consensus 301 ~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 380 (408)
+|+|+|++++++ ++.|++||+.++ +.+..+. ....+.+++|+| +|++|+
T Consensus 247 ~~s~dg~~l~~~--~~~v~~~d~~~~------------~~~~~~~-~~~~~~~~~~s~----------------dg~~l~ 295 (337)
T 1pby_B 247 AVNPAKTRAFGA--YNVLESFDLEKN------------ASIKRVP-LPHSYYSVNVST----------------DGSTVW 295 (337)
T ss_dssp EECTTSSEEEEE--ESEEEEEETTTT------------EEEEEEE-CSSCCCEEEECT----------------TSCEEE
T ss_pred EECCCCCEEEEe--CCeEEEEECCCC------------cCcceec-CCCceeeEEECC----------------CCCEEE
Confidence 999999999988 799999999875 3333333 234578999999 899999
Q ss_pred EEecCCeEEEEeCCCCCCccccccc
Q psy988 381 SADFNGVIRVFLNKTKPKHSSLPVS 405 (408)
Q Consensus 381 s~~~dg~v~iw~~~~~~~~~~~~~s 405 (408)
+++.|+.|++||+.+++....+++.
T Consensus 296 ~~~~~~~i~v~d~~~~~~~~~~~~~ 320 (337)
T 1pby_B 296 LGGALGDLAAYDAETLEKKGQVDLP 320 (337)
T ss_dssp EESBSSEEEEEETTTCCEEEEEECG
T ss_pred EEcCCCcEEEEECcCCcEEEEEEcC
Confidence 8899999999999999877766553
No 137
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.96 E-value=5.7e-27 Score=199.18 Aligned_cols=281 Identities=12% Similarity=0.121 Sum_probs=185.6
Q ss_pred CEEEEEeCCCcEEEEecCC-CCceeeeeecCCceeeEEEEEecCCCEEEEEecC-CEEEEEecc--CCeeeEEEEEeecc
Q psy988 36 RYFLSGSLDGKLRLWNIPD-KKVAVWNEVEGQTKLITAANFCENGKFAVVGSYD-GRCIFYTTD--QLKYHTQIHVRSTR 111 (408)
Q Consensus 36 ~~l~t~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~iw~~~--~~~~~~~~~~~~~~ 111 (408)
.++++++.|+.|++|++.. +..... ....+...+.+++|+|+|++|++++.+ +.|.+|+++ +++.........
T Consensus 6 ~l~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-- 82 (343)
T 1ri6_A 6 TVYIASPESQQIHVWNLNHEGALTLT-QVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL-- 82 (343)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEEE-EEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC--
T ss_pred EEEEeCCCCCeEEEEEECCCCcEEEe-eeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecccccc--
Confidence 3444557799999999963 333322 233466788999999999999998887 999999998 444322111111
Q ss_pred ccccCCCCeEEEeeCCCCCeEEEeeC-CCeEEEEEcc---CcccceeecCccccccceEEEEecCCCEEEEee-cCceEE
Q psy988 112 GKNATGRKISGIEPMPGEDKILVTSN-DSRIRLYDLR---DLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS-ENQCIY 186 (408)
Q Consensus 112 ~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~ 186 (408)
...+..++|+|+++++++++. ++.|.+||+. ..+....+... ..+..++|+|+++++++++ .++.|+
T Consensus 83 -----~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~~v~ 154 (343)
T 1ri6_A 83 -----PGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL---DGCHSANISPDNRTLWVPALKQDRIC 154 (343)
T ss_dssp -----SSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC---TTBCCCEECTTSSEEEEEEGGGTEEE
T ss_pred -----CCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC---CCceEEEECCCCCEEEEecCCCCEEE
Confidence 126788999999998877765 8899999994 33344444332 2366789999999888887 889999
Q ss_pred Eeeecc-ceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeE
Q psy988 187 IWKTHH-DYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKI 265 (408)
Q Consensus 187 i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 265 (408)
+||+.+ +..... ....+ .......+..++|+|+++++
T Consensus 155 ~~d~~~~~~~~~~--------------------~~~~~----------------------~~~~~~~~~~~~~~pdg~~l 192 (343)
T 1ri6_A 155 LFTVSDDGHLVAQ--------------------DPAEV----------------------TTVEGAGPRHMVFHPNEQYA 192 (343)
T ss_dssp EEEECTTSCEEEE--------------------EEEEE----------------------ECSTTCCEEEEEECTTSSEE
T ss_pred EEEecCCCceeee--------------------ccccc----------------------ccCCCCCcceEEECCCCCEE
Confidence 999965 211100 00000 00112244556677777765
Q ss_pred EE-ecCCCeEEEEEcCC--Cee--eeEEee----ccceeceeEEEEcCCCCEEE-EecCCceEEEeeccccCcccccccc
Q psy988 266 LV-TSNDSRIRLYDLRD--LNL--SCKYKG----YVNVSSQIKASFSHDGKYIV-SGSENQCIYIWKTHHDYAKFSSVRR 335 (408)
Q Consensus 266 ~~-~~~d~~i~i~d~~~--~~~--~~~~~~----~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~ 335 (408)
++ +..++.|.+||+.. ++. ...+.. +.....+..++|+|+|++|+ ++..++.|.+|++......
T Consensus 193 ~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~------ 266 (343)
T 1ri6_A 193 YCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSV------ 266 (343)
T ss_dssp EEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCC------
T ss_pred EEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCc------
Confidence 54 45889999999953 433 222221 11123456799999999887 4557899999999732110
Q ss_pred CccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEe-cCCeEEEEeCC
Q psy988 336 DRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSAD-FNGVIRVFLNK 394 (408)
Q Consensus 336 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~-~dg~v~iw~~~ 394 (408)
.+.+..+..+.. +.+++|+| +|++|++++ .|+.|.+|++.
T Consensus 267 --~~~~~~~~~~~~-~~~~~~s~----------------dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 267 --LSKEGFQPTETQ-PRGFNVDH----------------SGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp --EEEEEEEECSSS-CCCEEECT----------------TSSEEEEECTTTCEEEEEEEE
T ss_pred --eEEeeeecCCCc-cceEEECC----------------CCCEEEEecCCCCeEEEEEEc
Confidence 123333443444 88999999 888888777 68999999554
No 138
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=6.2e-28 Score=195.79 Aligned_cols=182 Identities=9% Similarity=0.056 Sum_probs=140.3
Q ss_pred CCceEEEEec-cCCeeEeEEE-eCCceEEEEEcC--CCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCc---eeeEEE
Q psy988 1 MDKTVRLWHI-SRKECLCCFQ-HIDFVTAICFHP--RDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQT---KLITAA 73 (408)
Q Consensus 1 ~Dg~i~vwd~-~~~~~~~~~~-h~~~v~~~~~sp--~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~v~~~ 73 (408)
+|+.|++|++ .+++.+..+. |...++.++|+| .++.+||+++.|++|+|||+++++.. +.+.+|. ..+.++
T Consensus 155 ~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l--~tL~g~~~~v~~v~~v 232 (356)
T 2w18_A 155 SDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLL--KKMHIDDSYQASVCHK 232 (356)
T ss_dssp TTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEE--EEEECCC---CCCEEE
T ss_pred CCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEE--EEEcCCCcceeeeEEE
Confidence 5899999999 4577777665 888888888887 36789999999999999999999876 5676543 467888
Q ss_pred EEecCCCEE------------EEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeE
Q psy988 74 NFCENGKFA------------VVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRI 141 (408)
Q Consensus 74 ~~~~~~~~l------------~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 141 (408)
+|+|+|.++ ++|+.|++|++||..+++......... ..+|...+.+..++ +..+++++.|++|
T Consensus 233 afSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~---p~Gh~~~~lsg~~s--g~~lASgS~DgTI 307 (356)
T 2w18_A 233 AYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCL---PPGQAGRFLEGDVK--DHCAAAILTSGTI 307 (356)
T ss_dssp EEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECC---CTTCCCCEEEEEEE--TTEEEEEETTSCE
T ss_pred EECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeec---cCCCcceeEccccC--CCEEEEEcCCCcE
Confidence 999999986 567889999999999887654332211 12333344444443 7789999999999
Q ss_pred EEEEccCcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeee
Q psy988 142 RLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKT 190 (408)
Q Consensus 142 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~ 190 (408)
+|||+.+++++.++.+|.... +..++|+|||++|++|+.|++|++||+
T Consensus 308 kIWDl~tGk~l~tL~gH~~~v-vs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 308 AIWDLLLGQCTALLPPVSDQH-WSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEETTTCSEEEEECCC--CC-CCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEEECCCCcEEEEecCCCCCe-EEEEEECCCCCEEEEEECCCcEEEecC
Confidence 999999999999998776532 335899999999999999999999986
No 139
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.96 E-value=1.9e-27 Score=197.81 Aligned_cols=254 Identities=17% Similarity=0.197 Sum_probs=178.0
Q ss_pred CCceEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCC-CCceeeeeecCC-ceeeEEEEEecC
Q psy988 1 MDKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPD-KKVAVWNEVEGQ-TKLITAANFCEN 78 (408)
Q Consensus 1 ~Dg~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~-~~~~~~~~~~~~-~~~v~~~~~~~~ 78 (408)
.|++|++||+.+++......|...|.+++|+| ++++|++++ ++.|++||+.+ ++.. .....+ ...+.+++|+|+
T Consensus 20 ~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~sp-dg~~l~~~~-~~~i~~~d~~~~~~~~--~~~~~~~~~~~~~~~~spd 95 (297)
T 2ojh_A 20 MRSSIEIFNIRTRKMRVVWQTPELFEAPNWSP-DGKYLLLNS-EGLLYRLSLAGDPSPE--KVDTGFATICNNDHGISPD 95 (297)
T ss_dssp CCEEEEEEETTTTEEEEEEEESSCCEEEEECT-TSSEEEEEE-TTEEEEEESSSCCSCE--ECCCTTCCCBCSCCEECTT
T ss_pred cceeEEEEeCCCCceeeeccCCcceEeeEECC-CCCEEEEEc-CCeEEEEeCCCCCCce--EeccccccccccceEECCC
Confidence 37899999999999988888999999999999 999999987 78999999998 7665 334444 467899999999
Q ss_pred CCEEEEEe--cCCEEEEEec--cCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEE-EeeCCCeEEEEEccCc-ccc
Q psy988 79 GKFAVVGS--YDGRCIFYTT--DQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKIL-VTSNDSRIRLYDLRDL-NLS 152 (408)
Q Consensus 79 ~~~l~~~~--~dg~i~iw~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~-~~~ 152 (408)
|++|++++ .++...+|.+ .+... . ... ....+..++|+|+++.|+ ++..++.+++|+++.. ...
T Consensus 96 g~~l~~~~~~~~~~~~l~~~~~~~~~~-~-----~~~----~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~ 165 (297)
T 2ojh_A 96 GALYAISDKVEFGKSAIYLLPSTGGTP-R-----LMT----KNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVE 165 (297)
T ss_dssp SSEEEEEECTTTSSCEEEEEETTCCCC-E-----ECC----SSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCE
T ss_pred CCEEEEEEeCCCCcceEEEEECCCCce-E-----Eee----cCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcc
Confidence 99999998 3345555544 44331 1 111 112588899999999887 6678899999986432 222
Q ss_pred eeecCccccccceEEEEecCCCEEEEee-cCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceee
Q psy988 153 CKYKGYVNVSSQIKASFSHDGKYIVSGS-ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELII 231 (408)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 231 (408)
..+..+. ..+.+++|+|++++|++++ .++.+++|++.... .....+..+...+..+.
T Consensus 166 ~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~-----------~~~~~~~~~~~~~~~~~--------- 223 (297)
T 2ojh_A 166 TRLTHGE--GRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG-----------SSVERITDSAYGDWFPH--------- 223 (297)
T ss_dssp EECCCSS--SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS-----------SCEEECCCCSEEEEEEE---------
T ss_pred eEcccCC--CccccceECCCCCEEEEEecCCCCccEEEECCCC-----------CCcEEEecCCcccCCeE---------
Confidence 3333332 3467899999999888766 58899999875211 11122233333444444
Q ss_pred eecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCC-----------CeEEEEEcCCCeeeeEEeeccceeceeEE
Q psy988 232 AQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSND-----------SRIRLYDLRDLNLSCKYKGYVNVSSQIKA 300 (408)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----------~~i~i~d~~~~~~~~~~~~~~~~~~v~~~ 300 (408)
|+|++++|++++.+ +.|++||+.+++.........+...+..+
T Consensus 224 --------------------------~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 277 (297)
T 2ojh_A 224 --------------------------PSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSP 277 (297)
T ss_dssp --------------------------ECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSC
T ss_pred --------------------------ECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccc
Confidence 45555555555443 57999999988764444322223367789
Q ss_pred EEcCCCCEEEEecCCc
Q psy988 301 SFSHDGKYIVSGSENQ 316 (408)
Q Consensus 301 ~~s~~~~~l~~~~~dg 316 (408)
+|+|++++|++++.+.
T Consensus 278 ~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 278 NWSPDGDEFAYVRYFP 293 (297)
T ss_dssp CBCTTSSEEEEEEECC
T ss_pred eECCCCCEEEEEEecc
Confidence 9999999998877653
No 140
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.96 E-value=1.8e-27 Score=222.49 Aligned_cols=314 Identities=10% Similarity=0.055 Sum_probs=206.6
Q ss_pred CceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCce---eeEEEEEecCCCEEEEEecC---------CE
Q psy988 23 DFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTK---LITAANFCENGKFAVVGSYD---------GR 90 (408)
Q Consensus 23 ~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~d---------g~ 90 (408)
..+.+++|+| +|+++++ +.||+|++||+.+++.. ..+..|.. .|.+++|+|||++|++++.+ +.
T Consensus 17 ~~~~~~~~sp-dg~~~~~-~~dg~i~~~d~~~g~~~--~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~ 92 (723)
T 1xfd_A 17 IHDPEAKWIS-DTEFIYR-EQKGTVRLWNVETNTST--VLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGY 92 (723)
T ss_dssp CCCCCCCBSS-SSCBCCC-CSSSCEEEBCGGGCCCE--EEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSE
T ss_pred ccccccEEcC-CCcEEEE-eCCCCEEEEECCCCcEE--EEeccccccccccceEEECCCCCEEEEEecCccceeecceee
Confidence 3467899999 8987776 78999999999998876 45555554 48999999999999999764 78
Q ss_pred EEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccc--------
Q psy988 91 CIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVS-------- 162 (408)
Q Consensus 91 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-------- 162 (408)
+.+||+.+++.. .......+...+..++|+|||+.|++++. +.|++||+.+++.......+....
T Consensus 93 i~~~d~~~~~~~------~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~ 165 (723)
T 1xfd_A 93 YVLSKIPHGDPQ------SLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDW 165 (723)
T ss_dssp EEEEESSSCCCE------ECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCH
T ss_pred EEEEECCCCceE------eccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccce
Confidence 899999987641 11112233445888999999999999886 799999999887665544322211
Q ss_pred --------cceEEEEecCCCEEEEeecCc----------------------------------eEEEeeeccceeeeeec
Q psy988 163 --------SQIKASFSHDGKYIVSGSENQ----------------------------------CIYIWKTHHDYAKFSSV 200 (408)
Q Consensus 163 --------~~~~~~~~~~~~~l~~~~~dg----------------------------------~i~i~d~~~~~~~~~~~ 200 (408)
.+..++|+|||++|++++.++ .|++||+.++.......
T Consensus 166 v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~ 245 (723)
T 1xfd_A 166 LYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMM 245 (723)
T ss_dssp HHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECC
T ss_pred eEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEee
Confidence 236799999999999887553 68888876543211000
Q ss_pred ccCCCccccccccccceEEEEEEeCCcceeeeecCCCCC-----------CCceeeec-CCCcee----eeeccCCCCCe
Q psy988 201 RRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKS-----------ESTGYVLN-ATGRKI----SGIEPMPGEDK 264 (408)
Q Consensus 201 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~-~~~~~i----~~~~~~~~~~~ 264 (408)
.......+...+..++|+|||+.++........ ........ .+...+ ..++|+|||+.
T Consensus 246 ------~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~ 319 (723)
T 1xfd_A 246 ------PPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRK 319 (723)
T ss_dssp ------CCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCS
T ss_pred ------CCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCe
Confidence 001122346788999999999988654332211 11111111 122223 37899999998
Q ss_pred EEEe--cCCC------eEEEEE-cCCCee--eeEEeeccceeceeE-EEEcCCCCEEEEecCC---ceEEEeeccccCcc
Q psy988 265 ILVT--SNDS------RIRLYD-LRDLNL--SCKYKGYVNVSSQIK-ASFSHDGKYIVSGSEN---QCIYIWKTHHDYAK 329 (408)
Q Consensus 265 l~~~--~~d~------~i~i~d-~~~~~~--~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~d---g~i~iw~~~~~~~~ 329 (408)
|+.. ..++ .|.+|| ..+++. ...+.... ..+.. ++|+|||+.|+..+.+ +.+++|++.....
T Consensus 320 l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~- 396 (723)
T 1xfd_A 320 FFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGD--WDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGN- 396 (723)
T ss_dssp EEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSS--SCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTT-
T ss_pred EEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCC--eEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCC-
Confidence 8754 4566 577777 344441 33333211 12333 6899999999765544 7899999875321
Q ss_pred ccccccCccccceeeee---eccceEEEEecCCchhhhh
Q psy988 330 FSSVRRDRNDFWEGIKA---HNAVVTCAVFAPCPELIIA 365 (408)
Q Consensus 330 ~~~~~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~~~~ 365 (408)
.....+.. |...+..++|+|+|++++.
T Consensus 397 ---------~~~~~l~~~~~~~~~~~~~~~spdg~~l~~ 426 (723)
T 1xfd_A 397 ---------FNRQCLSCDLVENCTYFSASFSHSMDFFLL 426 (723)
T ss_dssp ---------CCCBCSSTTSSSSCCCCEEEECTTSSEEEE
T ss_pred ---------CCcceecccccCCCCeEEEEECCCCCEEEE
Confidence 01112222 5667889999995444443
No 141
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.96 E-value=1.8e-26 Score=195.09 Aligned_cols=268 Identities=10% Similarity=0.101 Sum_probs=185.5
Q ss_pred CceEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeC-CCcEEEEecCCCCceeeeeecCCceeeEEEEEecCC
Q psy988 2 DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSL-DGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENG 79 (408)
Q Consensus 2 Dg~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 79 (408)
|+.|.+||+.+++.+..+. +...+ .++|+| +++++++++. ++.|.+||+.+++.. ...+..+..+..+++|+|+|
T Consensus 19 ~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~-dg~~l~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~dg 95 (331)
T 3u4y_A 19 LRRISFFSTDTLEILNQITLGYDFV-DTAITS-DCSNVVVTSDFCQTLVQIETQLEPPK-VVAIQEGQSSMADVDITPDD 95 (331)
T ss_dssp GTEEEEEETTTCCEEEEEECCCCEE-EEEECS-SSCEEEEEESTTCEEEEEECSSSSCE-EEEEEECSSCCCCEEECTTS
T ss_pred CCeEEEEeCcccceeeeEEccCCcc-eEEEcC-CCCEEEEEeCCCCeEEEEECCCCcee-EEecccCCCCccceEECCCC
Confidence 6899999999999988887 55666 999999 8886666655 889999999988862 14555555555559999999
Q ss_pred CEEEEEecCC---EEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEe-eCCCe-EEEEEccCccccee
Q psy988 80 KFAVVGSYDG---RCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVT-SNDSR-IRLYDLRDLNLSCK 154 (408)
Q Consensus 80 ~~l~~~~~dg---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~-i~i~d~~~~~~~~~ 154 (408)
++++++..++ .|.+||+.+++....... .....+++|+|++++++++ ..++. |.+|++.....+..
T Consensus 96 ~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~---------~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~ 166 (331)
T 3u4y_A 96 QFAVTVTGLNHPFNMQSYSFLKNKFISTIPI---------PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFD 166 (331)
T ss_dssp SEEEECCCSSSSCEEEEEETTTTEEEEEEEC---------CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEE
T ss_pred CEEEEecCCCCcccEEEEECCCCCeEEEEEC---------CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEee
Confidence 9999655553 999999998876544321 2356899999999877666 44577 99999875433211
Q ss_pred e--cCccccccceEEEEecCCCEEEEee-cCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceee
Q psy988 155 Y--KGYVNVSSQIKASFSHDGKYIVSGS-ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELII 231 (408)
Q Consensus 155 ~--~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 231 (408)
. ........+..++|+|+|+++++++ .++.|++||+.++... ..+..+
T Consensus 167 ~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~-------------------~~~~~~---------- 217 (331)
T 3u4y_A 167 TGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENI-------------------TLLNAV---------- 217 (331)
T ss_dssp EEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSC-------------------EEEEEE----------
T ss_pred cCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCccc-------------------ceeeec----------
Confidence 1 0001123366899999999766554 5889999998653210 000000
Q ss_pred eecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEe-cCCCeEEEEEcCCCee--eeEEeec----cc-eeceeEEEEc
Q psy988 232 AQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVT-SNDSRIRLYDLRDLNL--SCKYKGY----VN-VSSQIKASFS 303 (408)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~--~~~~~~~----~~-~~~v~~~~~s 303 (408)
.....+..++|+|+|++++++ ..++.|.+||+.+++. +..+... .. ......++|+
T Consensus 218 ----------------~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 281 (331)
T 3u4y_A 218 ----------------GTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALN 281 (331)
T ss_dssp ----------------ECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEEC
T ss_pred ----------------cCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEEC
Confidence 012344567777888866655 4578899999999877 3333322 11 1112457999
Q ss_pred CCCCEEEEe-cCCceEEEeecccc
Q psy988 304 HDGKYIVSG-SENQCIYIWKTHHD 326 (408)
Q Consensus 304 ~~~~~l~~~-~~dg~i~iw~~~~~ 326 (408)
|||++|+++ ..++.|.+||+...
T Consensus 282 pdg~~l~v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 282 KTETKLFISANISRELKVFTISGK 305 (331)
T ss_dssp TTSSEEEEEETTTTEEEEEETTSC
T ss_pred CCCCEEEEecCCCCcEEEEEecCC
Confidence 999988655 45679999999764
No 142
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.96 E-value=2.7e-25 Score=189.03 Aligned_cols=282 Identities=11% Similarity=0.091 Sum_probs=182.1
Q ss_pred CceEEEEecc--CCeeEe--EEEeCCceEEEEEcCCCCCEEEEEeC---CCcEEEEecCCCCceeeeeecCCceeeEEEE
Q psy988 2 DKTVRLWHIS--RKECLC--CFQHIDFVTAICFHPRDDRYFLSGSL---DGKLRLWNIPDKKVAVWNEVEGQTKLITAAN 74 (408)
Q Consensus 2 Dg~i~vwd~~--~~~~~~--~~~h~~~v~~~~~sp~~~~~l~t~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~ 74 (408)
++.|.+|+++ +++... ...+...+..++|+| +++ |++++. ++.|.+|++.++.......+..+...+..++
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~sp-dg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a 92 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSA-KDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVA 92 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECT-TCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEE
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEcc-CCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEE
Confidence 3457777664 565543 345778899999999 888 555544 6899999998877554455556677889999
Q ss_pred EecCCCEEEEEe-cCCEEEEEeccCCeeeEEEEEeecccc----ccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEcc-C
Q psy988 75 FCENGKFAVVGS-YDGRCIFYTTDQLKYHTQIHVRSTRGK----NATGRKISGIEPMPGEDKILVTSNDSRIRLYDLR-D 148 (408)
Q Consensus 75 ~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~-~ 148 (408)
|+|+|++|++++ .++.+.+|++...............+. ......+.+++|+|+++.+++...++.|++|++. +
T Consensus 93 ~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~ 172 (347)
T 3hfq_A 93 VDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDA 172 (347)
T ss_dssp EETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTT
T ss_pred ECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCC
Confidence 999999998888 679999999963222222211111111 0122358899999999955555668899999998 4
Q ss_pred ccccee--ecCccccccceEEEEecCCCEEEEe-ecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeC
Q psy988 149 LNLSCK--YKGYVNVSSQIKASFSHDGKYIVSG-SENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAP 225 (408)
Q Consensus 149 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 225 (408)
++.... +.... ...+..++|+|+|++++++ ..++.|.+|++........ .+..+...|
T Consensus 173 g~~~~~~~~~~~~-g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~------------------~~~~~~~~~ 233 (347)
T 3hfq_A 173 GQLSEQSVLTMEA-GFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFT------------------QLGIVKTIP 233 (347)
T ss_dssp SCEEEEEEEECCT-TCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEE------------------EEEEEESSC
T ss_pred CcEEEeeeEEcCC-CCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceE------------------EeeeeeecC
Confidence 443221 11111 1235679999999976664 5678999999863111000 000111001
Q ss_pred CcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEE-EecCCCeEEEEEcCCC---eeeeEEeeccceeceeEEE
Q psy988 226 CPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKIL-VTSNDSRIRLYDLRDL---NLSCKYKGYVNVSSQIKAS 301 (408)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~---~~~~~~~~~~~~~~v~~~~ 301 (408)
.+ ......+..++|+|||++|+ +...++.|.+|++... +.+..+..+ ...+..++
T Consensus 234 ~~-------------------~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~--~~~~~~~~ 292 (347)
T 3hfq_A 234 AD-------------------YTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTE--GDFPRDFD 292 (347)
T ss_dssp TT-------------------CCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECS--SSCCCEEE
T ss_pred CC-------------------CCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecC--CCCcCeEE
Confidence 00 01113466777888888764 4566899999999732 333344332 22567899
Q ss_pred EcCCCCEEEEecC-CceEEEeeccc
Q psy988 302 FSHDGKYIVSGSE-NQCIYIWKTHH 325 (408)
Q Consensus 302 ~s~~~~~l~~~~~-dg~i~iw~~~~ 325 (408)
|+|||++|++++. ++.|.+|+++.
T Consensus 293 ~spdg~~l~v~~~~~~~v~v~~~d~ 317 (347)
T 3hfq_A 293 LDPTEAFVVVVNQNTDNATLYARDL 317 (347)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEECT
T ss_pred ECCCCCEEEEEEcCCCcEEEEEEeC
Confidence 9999999888765 48999996643
No 143
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.96 E-value=9.4e-27 Score=193.58 Aligned_cols=258 Identities=14% Similarity=0.139 Sum_probs=179.9
Q ss_pred EEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccC-CeeeEEEEEeeccccccCCC
Q psy988 40 SGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQ-LKYHTQIHVRSTRGKNATGR 118 (408)
Q Consensus 40 t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~ 118 (408)
.++.|+.|++||+.+++.. .+..|...|.+++|+|+|++|++++ ++.|.+||+.+ .+..... . ..+..
T Consensus 17 ~~~~~~~i~~~d~~~~~~~---~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~-----~--~~~~~ 85 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMR---VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVD-----T--GFATI 85 (297)
T ss_dssp -CCCCEEEEEEETTTTEEE---EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECC-----C--TTCCC
T ss_pred CCCcceeEEEEeCCCCcee---eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEec-----c--ccccc
Confidence 3457899999999988754 4556788999999999999999976 88999999988 6542211 1 11235
Q ss_pred CeEEEeeCCCCCeEEEee--CCCeEEEE--EccCcccceeecCccccccceEEEEecCCCEEE-EeecCceEEEeeeccc
Q psy988 119 KISGIEPMPGEDKILVTS--NDSRIRLY--DLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIV-SGSENQCIYIWKTHHD 193 (408)
Q Consensus 119 ~v~~~~~~~~~~~l~~~~--~dg~i~i~--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~ 193 (408)
.+.+++|+|++++|++++ .++...+| ++.+++ ...+..+. .+..++|+|++++|+ ++..++.+++|++...
T Consensus 86 ~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~---~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~ 161 (297)
T 2ojh_A 86 CNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL---PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDID 161 (297)
T ss_dssp BCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSS---SEEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred cccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCC---CccceEECCCCCEEEEEECCCCceEEEEEECC
Confidence 788999999999999998 33445555 545444 33333322 266789999999887 6778999999987432
Q ss_pred eeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEec-CCC
Q psy988 194 YAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTS-NDS 272 (408)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~ 272 (408)
... ...+..+ ...+.+++|+|++++|++++ .++
T Consensus 162 ~~~-----------~~~~~~~-----------------------------------~~~~~~~~~s~dg~~l~~~~~~~~ 195 (297)
T 2ojh_A 162 SGV-----------ETRLTHG-----------------------------------EGRNDGPDYSPDGRWIYFNSSRTG 195 (297)
T ss_dssp TCC-----------EEECCCS-----------------------------------SSCEEEEEECTTSSEEEEEECTTS
T ss_pred CCc-----------ceEcccC-----------------------------------CCccccceECCCCCEEEEEecCCC
Confidence 100 1112222 23445555666666566554 588
Q ss_pred eEEEEEcC-CCeeeeEEeeccceeceeEEEEcCCCCEEEEecCC-----------ceEEEeeccccCccccccccCcccc
Q psy988 273 RIRLYDLR-DLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSEN-----------QCIYIWKTHHDYAKFSSVRRDRNDF 340 (408)
Q Consensus 273 ~i~i~d~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----------g~i~iw~~~~~~~~~~~~~~~~~~~ 340 (408)
.+++|++. .+.....+..+. ..+..++|+|+|++|++++.+ +.|++||+.++.. ..
T Consensus 196 ~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~----------~~ 263 (297)
T 2ojh_A 196 QMQIWRVRVDGSSVERITDSA--YGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV----------ET 263 (297)
T ss_dssp SCEEEEEETTSSCEEECCCCS--EEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC----------EE
T ss_pred CccEEEECCCCCCcEEEecCC--cccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCc----------ee
Confidence 89999886 455555555543 367789999999999988765 5799999987521 22
Q ss_pred ceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCC
Q psy988 341 WEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNG 386 (408)
Q Consensus 341 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg 386 (408)
+..+.+|...+.+++|+| +++.|++++.|.
T Consensus 264 ~~~~~~~~~~~~~~~~sp----------------dg~~l~~~~~~~ 293 (297)
T 2ojh_A 264 LFDLFGGQGTMNSPNWSP----------------DGDEFAYVRYFP 293 (297)
T ss_dssp EEEEEESTTTSCSCCBCT----------------TSSEEEEEEECC
T ss_pred eeccCCCCcccccceECC----------------CCCEEEEEEecc
Confidence 344557888999999999 888888877653
No 144
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.96 E-value=3.6e-25 Score=188.84 Aligned_cols=287 Identities=7% Similarity=0.031 Sum_probs=200.8
Q ss_pred eEEEeCCceEEEEEcCCCCCEEEEEeC-------CCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEE-ecC
Q psy988 17 CCFQHIDFVTAICFHPRDDRYFLSGSL-------DGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVG-SYD 88 (408)
Q Consensus 17 ~~~~h~~~v~~~~~sp~~~~~l~t~~~-------dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d 88 (408)
........+..++|+| +++++++++. ++.|.+||..+++... .+.. ...+..++|+|+|++++++ ..+
T Consensus 35 ~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~--~~~~-~~~~~~~~~s~dg~~l~v~~~~~ 110 (353)
T 3vgz_A 35 LRKAVGKGAYEMAYSQ-QENALWLATSQSRKLDKGGVVYRLDPVTLEVTQ--AIHN-DLKPFGATINNTTQTLWFGNTVN 110 (353)
T ss_dssp EEEEEESSEEEEEEET-TTTEEEEEECCCTTTEESEEEEEECTTTCCEEE--EEEE-SSCCCSEEEETTTTEEEEEETTT
T ss_pred hhhhhccCccceEECC-CCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEE--EEec-CCCcceEEECCCCCEEEEEecCC
Confidence 3445677899999999 8888887774 5689999999987663 3332 3347789999999966555 457
Q ss_pred CEEEEEeccCCeeeEEEEEeecccc-ccCCCCeEEEeeCCCCCeEEEee--CCCeEEEEEccCcccceeecCccccccce
Q psy988 89 GRCIFYTTDQLKYHTQIHVRSTRGK-NATGRKISGIEPMPGEDKILVTS--NDSRIRLYDLRDLNLSCKYKGYVNVSSQI 165 (408)
Q Consensus 89 g~i~iw~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 165 (408)
+.|.+||..+++............. ......+.+++|+|+++++++++ .++.|.+||+++++....+..... .+.
T Consensus 111 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~--~~~ 188 (353)
T 3vgz_A 111 SAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGK--MST 188 (353)
T ss_dssp TEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCT--TCC
T ss_pred CEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCC--ccc
Confidence 9999999998876555443211100 00011368899999999888876 478999999999888777663322 255
Q ss_pred EEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceee
Q psy988 166 KASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYV 245 (408)
Q Consensus 166 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (408)
.++|+|+++++++++.++.|.+||..++......... ..
T Consensus 189 ~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~--------~~--------------------------------- 227 (353)
T 3vgz_A 189 GLALDSEGKRLYTTNADGELITIDTADNKILSRKKLL--------DD--------------------------------- 227 (353)
T ss_dssp CCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECC--------CS---------------------------------
T ss_pred eEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcC--------CC---------------------------------
Confidence 6899999999999999999999998765332110000 00
Q ss_pred ecCCCceeeeeccCCCCCeEEEe-cCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEec-CCceEEEeec
Q psy988 246 LNATGRKISGIEPMPGEDKILVT-SNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS-ENQCIYIWKT 323 (408)
Q Consensus 246 ~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~ 323 (408)
.+...+..++|+|++++++++ ..++.|.+||..+++....+.... ...++|+|+|+++++++ .++.|.+||.
T Consensus 228 --~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~----~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 301 (353)
T 3vgz_A 228 --GKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE----SLAVLFNPARNEAYVTHRQAGKVSVIDA 301 (353)
T ss_dssp --SSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS----CCCEEEETTTTEEEEEETTTTEEEEEET
T ss_pred --CCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC----CceEEECCCCCEEEEEECCCCeEEEEEC
Confidence 112234445556666655554 455999999999999887776532 24689999999666554 6899999999
Q ss_pred cccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecC
Q psy988 324 HHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFN 385 (408)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d 385 (408)
.++ +.+..+.. ...+.+++|+| +|++|+.+..+
T Consensus 302 ~~~------------~~~~~~~~-~~~~~~~~~s~----------------dg~~l~v~~~~ 334 (353)
T 3vgz_A 302 KSY------------KVVKTFDT-PTHPNSLALSA----------------DGKTLYVSVKQ 334 (353)
T ss_dssp TTT------------EEEEEEEC-CSEEEEEEECT----------------TSCEEEEEEEC
T ss_pred CCC------------eEEEEEec-CCCCCeEEEcC----------------CCCEEEEEEcc
Confidence 876 34444443 34678999999 78766666554
No 145
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.95 E-value=1.3e-25 Score=209.29 Aligned_cols=266 Identities=9% Similarity=0.044 Sum_probs=184.5
Q ss_pred CceEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCC-----CCceeeeeecCCcee-------
Q psy988 2 DKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPD-----KKVAVWNEVEGQTKL------- 69 (408)
Q Consensus 2 Dg~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~-----~~~~~~~~~~~~~~~------- 69 (408)
|+.|++||+.+++......+...+.+++||| +|++|+++ .|+.|++|++.+ ++... ....+...
T Consensus 100 ~~~i~~~d~~~~~~~~l~~~~~~~~~~~~Sp-dG~~la~~-~~~~i~v~~~~~~~~~~g~~~~--~~~~~~~~~~~g~~~ 175 (706)
T 2z3z_A 100 QGGLVGFDMLARKVTYLFDTNEETASLDFSP-VGDRVAYV-RNHNLYIARGGKLGEGMSRAIA--VTIDGTETLVYGQAV 175 (706)
T ss_dssp TTEEEEEETTTTEEEEEECCTTCCTTCEECT-TSSEEEEE-ETTEEEEEECBCTTSCCCCCEE--SCSCCBTTEEESSCC
T ss_pred CCEEEEEECCCCceEEccCCcccccCCcCCC-CCCEEEEE-ECCeEEEEecCcccccCCCcEE--eccCCCCCeEcccch
Confidence 5789999999998888777888999999999 99999985 679999999998 76542 22222222
Q ss_pred -------eEEEEEecCCCEEEEEe---------------------------------cCCEEEEEeccCCeeeEEEEEee
Q psy988 70 -------ITAANFCENGKFAVVGS---------------------------------YDGRCIFYTTDQLKYHTQIHVRS 109 (408)
Q Consensus 70 -------v~~~~~~~~~~~l~~~~---------------------------------~dg~i~iw~~~~~~~~~~~~~~~ 109 (408)
+.++.|+|||++|++++ .+..|.+||+.+++....
T Consensus 176 ~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~----- 250 (706)
T 2z3z_A 176 HQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYL----- 250 (706)
T ss_dssp GGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEEC-----
T ss_pred hhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEee-----
Confidence 48899999999999987 346899999988764211
Q ss_pred ccccccCCCCeEEEeeCCCCCeEEEeeCCC-----eEEEEEccCcccceeecCccccc---cceEEEEec--CCCEEEEe
Q psy988 110 TRGKNATGRKISGIEPMPGEDKILVTSNDS-----RIRLYDLRDLNLSCKYKGYVNVS---SQIKASFSH--DGKYIVSG 179 (408)
Q Consensus 110 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~l~~~ 179 (408)
.....+...+..++|+|+++.|++++.++ .|++||+.+++....+....... .+..+.|+| +|++++++
T Consensus 251 -~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~ 329 (706)
T 2z3z_A 251 -QTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQS 329 (706)
T ss_dssp -CCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEE
T ss_pred -ccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEE
Confidence 11123445789999999999999987665 89999999883333332111111 134578999 99999999
Q ss_pred ecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccC
Q psy988 180 SENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPM 259 (408)
Q Consensus 180 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 259 (408)
..++.+++|++.... .....+..+...+.. .++|+
T Consensus 330 ~~~g~~~l~~~~~~~-----------~~~~~l~~~~~~v~~----------------------------------~~~~s 364 (706)
T 2z3z_A 330 RRDGWNHLYLYDTTG-----------RLIRQVTKGEWEVTN----------------------------------FAGFD 364 (706)
T ss_dssp CTTSSCEEEEEETTS-----------CEEEECCCSSSCEEE----------------------------------EEEEC
T ss_pred ccCCccEEEEEECCC-----------CEEEecCCCCeEEEe----------------------------------eeEEc
Confidence 999999999875211 111222233333333 13445
Q ss_pred CCCCeEEE-ecCCC----eEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCC----ceEEEeecccc
Q psy988 260 PGEDKILV-TSNDS----RIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSEN----QCIYIWKTHHD 326 (408)
Q Consensus 260 ~~~~~l~~-~~~d~----~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~iw~~~~~ 326 (408)
|+++.|+. +..++ .|..||+.+++. ..+. + ...+.+++|+|||++|+....+ +.|++||+.++
T Consensus 365 pdg~~l~~~~~~~~~~~~~l~~~d~~~~~~-~~l~-~--~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~ 436 (706)
T 2z3z_A 365 PKGTRLYFESTEASPLERHFYCIDIKGGKT-KDLT-P--ESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKG 436 (706)
T ss_dssp TTSSEEEEEESSSCTTCBEEEEEETTCCCC-EESC-C--SSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSC
T ss_pred CCCCEEEEEecCCCCceEEEEEEEcCCCCc-eecc-C--CCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCC
Confidence 55554444 44444 677778777653 2332 2 2357789999999998876433 56999999875
No 146
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.95 E-value=6.7e-26 Score=212.38 Aligned_cols=299 Identities=10% Similarity=0.071 Sum_probs=207.7
Q ss_pred eEEEEeccCCeeEeEEE-eCC------------------------ceEEEEEcCCCCCEEEEEeCCCcEEEEecCCC---
Q psy988 4 TVRLWHISRKECLCCFQ-HID------------------------FVTAICFHPRDDRYFLSGSLDGKLRLWNIPDK--- 55 (408)
Q Consensus 4 ~i~vwd~~~~~~~~~~~-h~~------------------------~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~--- 55 (408)
+|++||+.+++....+. +.. .|.+++||| ||++|++++. +.|++||+.++
T Consensus 65 ~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Sp-Dg~~l~~~~~-~~i~~~d~~~~~~~ 142 (741)
T 2ecf_A 65 DLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSP-DAQRLLFPLG-GELYLYDLKQEGKA 142 (741)
T ss_dssp EEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECT-TSSEEEEEET-TEEEEEESSSCSTT
T ss_pred EEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECC-CCCEEEEEeC-CcEEEEECCCCCcc
Confidence 89999999999888776 322 388999999 9999999986 99999999988
Q ss_pred CceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeecccccc--------CCCCeEEEeeCC
Q psy988 56 KVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNA--------TGRKISGIEPMP 127 (408)
Q Consensus 56 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~--------~~~~v~~~~~~~ 127 (408)
.. ..+..|...+..++|+|||++|+.++ ++.|.+||+.+++..............+ ....+..+.|+|
T Consensus 143 ~~---~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp 218 (741)
T 2ecf_A 143 AV---RQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAP 218 (741)
T ss_dssp SC---CBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECT
T ss_pred eE---EEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECC
Confidence 44 35677788899999999999999887 5699999998865432111000000000 001257899999
Q ss_pred CCCeEEEeeCCC---------------------------------eEEEEEccC-cccceeecCccccccceEEEEecCC
Q psy988 128 GEDKILVTSNDS---------------------------------RIRLYDLRD-LNLSCKYKGYVNVSSQIKASFSHDG 173 (408)
Q Consensus 128 ~~~~l~~~~~dg---------------------------------~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (408)
||++|++++.|+ .|++||+.+ ++.............+..++| |||
T Consensus 219 Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg 297 (741)
T 2ecf_A 219 DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDP 297 (741)
T ss_dssp TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EET
T ss_pred CCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCC
Confidence 999999987665 789999988 775544332123345778999 999
Q ss_pred CEEEEeec-----CceEEEeeeccceeeeeecccCCCccccccccccc----eEEEEEEeCCcceeeeecCCCC------
Q psy988 174 KYIVSGSE-----NQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNA----VVTCAVFAPCPELIIAQMEPDK------ 238 (408)
Q Consensus 174 ~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~~~~~~~~~~------ 238 (408)
++|+++.. +..|++||+.++..... +..+.. .+..++|+|+|+.++.......
T Consensus 298 ~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~------------~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 365 (741)
T 2ecf_A 298 QHLSFQRQSRDQKKLDLVEVTLASNQQRVL------------AHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRI 365 (741)
T ss_dssp TEEEEEEEETTSSEEEEEEEETTTCCEEEE------------EEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEE
T ss_pred CEEEEEEecccCCeEEEEEEECCCCceEEE------------EEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEE
Confidence 99987754 56899999876543221 111111 3457889999996655433221
Q ss_pred --CCCceeeecCCCceeeee-ccCCCCCeEEEe-cCCC--eEEEEEcCC-CeeeeEEeeccceeceeEEEEcCCCCEEEE
Q psy988 239 --SESTGYVLNATGRKISGI-EPMPGEDKILVT-SNDS--RIRLYDLRD-LNLSCKYKGYVNVSSQIKASFSHDGKYIVS 311 (408)
Q Consensus 239 --~~~~~~~~~~~~~~i~~~-~~~~~~~~l~~~-~~d~--~i~i~d~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 311 (408)
... ...+..+...+..+ .|+|+++.|+.. +.++ .++||++.. ++....+.. ...+..++|||||++|+.
T Consensus 366 ~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~---~~~~~~~~~spdg~~l~~ 441 (741)
T 2ecf_A 366 DSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK---APGMHSASFARNASVYVD 441 (741)
T ss_dssp CSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC---SCSEEEEEECTTSSEEEE
T ss_pred cCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc---CCCceEEEECCCCCEEEE
Confidence 112 33444556667776 599999987654 4455 899999864 554555544 225678999999999886
Q ss_pred ecCC----ceEEEeeccc
Q psy988 312 GSEN----QCIYIWKTHH 325 (408)
Q Consensus 312 ~~~d----g~i~iw~~~~ 325 (408)
...+ ..+++|+...
T Consensus 442 ~~~~~~~p~~~~l~~~~~ 459 (741)
T 2ecf_A 442 SWSNNSTPPQIELFRANG 459 (741)
T ss_dssp EEEETTEEEEEEEEETTS
T ss_pred EecCCCCCCeEEEEEcCC
Confidence 5433 5788888754
No 147
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.95 E-value=1.8e-23 Score=178.79 Aligned_cols=297 Identities=11% Similarity=0.111 Sum_probs=189.5
Q ss_pred CceEEEEec--cCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCC----CcEEEEecCC--CCceeeeeecCCceeeEE
Q psy988 2 DKTVRLWHI--SRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLD----GKLRLWNIPD--KKVAVWNEVEGQTKLITA 72 (408)
Q Consensus 2 Dg~i~vwd~--~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~d----g~i~iw~~~~--~~~~~~~~~~~~~~~v~~ 72 (408)
++.|.+|.+ ++++...... +...+..++|+| ++++|++++.+ +.|.+|++.. +..........+......
T Consensus 26 ~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~sp-dg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~ 104 (361)
T 3scy_A 26 SKGIYTFRFNEETGESLPLSDAEVANPSYLIPSA-DGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCY 104 (361)
T ss_dssp CCEEEEEEEETTTCCEEEEEEEECSCCCSEEECT-TSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEE
T ss_pred CCCEEEEEEeCCCCCEEEeecccCCCCceEEECC-CCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEE
Confidence 467888876 4555443322 788899999999 99999999885 7999999876 444433444445556777
Q ss_pred EEEecCCCEEEEEe-cCCEEEEEeccCCeeeEEEE-Eeeccc-----cccCCCCeEEEeeCCCCCeEEEeeC-CCeEEEE
Q psy988 73 ANFCENGKFAVVGS-YDGRCIFYTTDQLKYHTQIH-VRSTRG-----KNATGRKISGIEPMPGEDKILVTSN-DSRIRLY 144 (408)
Q Consensus 73 ~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~-~~~~~~-----~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~ 144 (408)
+++ ++++|++++ .++.+.+|++.......... .....+ ...+...+.+++|+|+++++++++. ++.|.+|
T Consensus 105 ~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~ 182 (361)
T 3scy_A 105 LTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKF 182 (361)
T ss_dssp EEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred EEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEE
Confidence 777 888887776 57899999997543221110 000000 1112335688999999998777654 7899999
Q ss_pred EccCccc------c------eeecCccccccceEEEEecCCCEEEEee-cCceEEEeeeccceeeeeecccCCCcccccc
Q psy988 145 DLRDLNL------S------CKYKGYVNVSSQIKASFSHDGKYIVSGS-ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGI 211 (408)
Q Consensus 145 d~~~~~~------~------~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 211 (408)
++..... + ..... .....+..++|+|+|+++++++ .++.|.+|++.++....
T Consensus 183 ~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~-------------- 247 (361)
T 3scy_A 183 NINPNANADNKEKFLTKGTPEAFKV-APGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDE-------------- 247 (361)
T ss_dssp EECTTCCTTTCCCCEEEEEEEEEEC-CTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEE--------------
T ss_pred EEcCCCCcccccceeecccccceec-CCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEE--------------
Confidence 9875432 1 11111 1123356799999999888777 58899999986432110
Q ss_pred ccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecC--CCeEEEEEcC--CCee--e
Q psy988 212 KAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSN--DSRIRLYDLR--DLNL--S 285 (408)
Q Consensus 212 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--d~~i~i~d~~--~~~~--~ 285 (408)
+..+...+ .+...+..++|+|||++|+++.. ++.|.+|++. +++. +
T Consensus 248 ------~~~~~~~~----------------------~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~ 299 (361)
T 3scy_A 248 ------IQTVAADT----------------------VNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKV 299 (361)
T ss_dssp ------EEEEESCS----------------------SCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEE
T ss_pred ------eEEEecCC----------------------CCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEe
Confidence 00000000 11223456777778887766554 5899999996 4443 3
Q ss_pred eEEeeccceeceeEEEEcCCCCEEEEec-CCceEEEeeccccCccccccccCccccceee-eeeccceEEEEec
Q psy988 286 CKYKGYVNVSSQIKASFSHDGKYIVSGS-ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGI-KAHNAVVTCAVFA 357 (408)
Q Consensus 286 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~ 357 (408)
..+.. ...+..++|+|||++|++++ .++.|.+|+++.... ++.... ..+...+.|+.|.
T Consensus 300 ~~~~~---g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g----------~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 300 GYQLT---GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATG----------LLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp EEEEC---SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTC----------CEEECSCCEECSSEEEEEEE
T ss_pred eEecC---CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCC----------cEeecceeeeCCCCeEEEEc
Confidence 33332 23567899999999988877 678999977653211 111111 2244568888885
No 148
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.95 E-value=5.1e-24 Score=181.16 Aligned_cols=277 Identities=10% Similarity=0.060 Sum_probs=177.6
Q ss_pred CCcEEEEecCC--CCceeeeeecCCceeeEEEEEecCCCEEEEEec---CCEEEEEeccCCeeeEEEEEeeccccccCCC
Q psy988 44 DGKLRLWNIPD--KKVAVWNEVEGQTKLITAANFCENGKFAVVGSY---DGRCIFYTTDQLKYHTQIHVRSTRGKNATGR 118 (408)
Q Consensus 44 dg~i~iw~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 118 (408)
++.|.+|+++. ++.... ....+...+..++|+|+|+ |++++. ++.|.+|++.++......... .+..
T Consensus 15 ~~~i~v~~~d~~tg~~~~~-~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~------~~~~ 86 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTND-GLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVV------APGT 86 (347)
T ss_dssp CCEEEEEEEETTTTEEEEE-EEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEE------EESC
T ss_pred CCCEEEEEEcCCCCeEEEe-eeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeee------cCCC
Confidence 45677877754 444322 2334456678899999999 665554 589999999776532222111 1234
Q ss_pred CeEEEeeCCCCCeEEEee-CCCeEEEEEccC-cc--cceeecCcc-------ccccceEEEEecCCCEEEEeecCceEEE
Q psy988 119 KISGIEPMPGEDKILVTS-NDSRIRLYDLRD-LN--LSCKYKGYV-------NVSSQIKASFSHDGKYIVSGSENQCIYI 187 (408)
Q Consensus 119 ~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~-~~--~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~~dg~i~i 187 (408)
.+..++|+|++++|++++ .++.|.+|++.. +. .+..+.... ....+.+++|+|+|+.+++...++.|++
T Consensus 87 ~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~ 166 (347)
T 3hfq_A 87 PPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYV 166 (347)
T ss_dssp CCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred CCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEE
Confidence 678899999999998887 679999999963 22 222221111 1123567999999996666666889999
Q ss_pred eeecc-ceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEE
Q psy988 188 WKTHH-DYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKIL 266 (408)
Q Consensus 188 ~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 266 (408)
|++.. +.... +..+.. .....+..++|+|||++++
T Consensus 167 ~~~~~~g~~~~--------------------~~~~~~------------------------~~g~~p~~~~~spdg~~l~ 202 (347)
T 3hfq_A 167 YNVSDAGQLSE--------------------QSVLTM------------------------EAGFGPRHLVFSPDGQYAF 202 (347)
T ss_dssp EEECTTSCEEE--------------------EEEEEC------------------------CTTCCEEEEEECTTSSEEE
T ss_pred EEECCCCcEEE--------------------eeeEEc------------------------CCCCCCceEEECCCCCEEE
Confidence 99862 11000 000000 1112344567777777555
Q ss_pred E-ecCCCeEEEEEcCC--Ceeee--EEeeccc----eeceeEEEEcCCCCEEE-EecCCceEEEeeccccCccccccccC
Q psy988 267 V-TSNDSRIRLYDLRD--LNLSC--KYKGYVN----VSSQIKASFSHDGKYIV-SGSENQCIYIWKTHHDYAKFSSVRRD 336 (408)
Q Consensus 267 ~-~~~d~~i~i~d~~~--~~~~~--~~~~~~~----~~~v~~~~~s~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~ 336 (408)
+ ...++.|.+|++.. ++... .+..... ...+..++|+|||++|+ +...++.|.+|++.....
T Consensus 203 v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~-------- 274 (347)
T 3hfq_A 203 LAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGH-------- 274 (347)
T ss_dssp EEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGC--------
T ss_pred EEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCc--------
Confidence 5 56789999999874 54322 2222111 13467899999999885 455689999999974210
Q ss_pred ccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEec-CCeEEEEeC--CCCC
Q psy988 337 RNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADF-NGVIRVFLN--KTKP 397 (408)
Q Consensus 337 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~-dg~v~iw~~--~~~~ 397 (408)
...+..+..+...+..++|+| ||++|++++. ++.|.+|++ .+++
T Consensus 275 -~~~~~~~~~~~~~~~~~~~sp----------------dg~~l~v~~~~~~~v~v~~~d~~tg~ 321 (347)
T 3hfq_A 275 -LTLIQQISTEGDFPRDFDLDP----------------TEAFVVVVNQNTDNATLYARDLTSGK 321 (347)
T ss_dssp -EEEEEEEECSSSCCCEEEECT----------------TSSEEEEEETTTTEEEEEEECTTTCC
T ss_pred -EEEeEEEecCCCCcCeEEECC----------------CCCEEEEEEcCCCcEEEEEEeCCCCe
Confidence 133444555566789999999 8998888776 489999954 4554
No 149
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.94 E-value=1.2e-25 Score=210.08 Aligned_cols=298 Identities=13% Similarity=0.074 Sum_probs=198.8
Q ss_pred CceEEEEeccCCeeEeEEE-eCC---ceEEEEEcCCCCCEEEEEeCC---------CcEEEEecCCCCceeeeeecCCce
Q psy988 2 DKTVRLWHISRKECLCCFQ-HID---FVTAICFHPRDDRYFLSGSLD---------GKLRLWNIPDKKVAVWNEVEGQTK 68 (408)
Q Consensus 2 Dg~i~vwd~~~~~~~~~~~-h~~---~v~~~~~sp~~~~~l~t~~~d---------g~i~iw~~~~~~~~~~~~~~~~~~ 68 (408)
||+|++||+.+++....+. |.. .|.+++||| ||++|++++.+ +.|.+||+.+++...+.....|..
T Consensus 36 dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~Sp-Dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~ 114 (723)
T 1xfd_A 36 KGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISP-DREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNA 114 (723)
T ss_dssp SSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECT-TSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSC
T ss_pred CCCEEEEECCCCcEEEEeccccccccccceEEECC-CCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccc
Confidence 7899999999999888887 443 499999999 99999999874 778899999987643344445666
Q ss_pred eeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccc-ccc---------CCCCeEEEeeCCCCCeEEEeeCC
Q psy988 69 LITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRG-KNA---------TGRKISGIEPMPGEDKILVTSND 138 (408)
Q Consensus 69 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~-~~~---------~~~~v~~~~~~~~~~~l~~~~~d 138 (408)
.+..++|+|||++|+.++. +.|++|++.+++............ ..+ ....+.+++|+|||+.|++++.+
T Consensus 115 ~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~ 193 (723)
T 1xfd_A 115 KLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAIN 193 (723)
T ss_dssp CCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEE
T ss_pred cccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEEC
Confidence 6889999999999999876 799999998876543221100000 000 01134789999999999998654
Q ss_pred C----------------------------------eEEEEEccCcccceeecCcc----ccccceEEEEecCCCEEEEee
Q psy988 139 S----------------------------------RIRLYDLRDLNLSCKYKGYV----NVSSQIKASFSHDGKYIVSGS 180 (408)
Q Consensus 139 g----------------------------------~i~i~d~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~ 180 (408)
+ .|++||+.+++....+..+. ....+..++|+|||+++++..
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~ 273 (723)
T 1xfd_A 194 DSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWL 273 (723)
T ss_dssp CTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEE
T ss_pred CCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEE
Confidence 3 79999999887655554431 123467899999999887764
Q ss_pred c----CceEEEeeeccceeeeeecccCCCccccccccccceE----EEEEEeCCcceeeee-cCCCC-------------
Q psy988 181 E----NQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVV----TCAVFAPCPELIIAQ-MEPDK------------- 238 (408)
Q Consensus 181 ~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v----~~~~~~~~~~~~~~~-~~~~~------------- 238 (408)
. +..|++||+.++....... ..+...+ ..++|+|+|+.++.. .....
T Consensus 274 ~~~~~~~~i~~~d~~~g~~~~~~~-----------~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~ 342 (723)
T 1xfd_A 274 NRAQNVSILTLCDATTGVCTKKHE-----------DESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSS 342 (723)
T ss_dssp ETTSCEEEEEEEETTTCCEEEEEE-----------EECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECS
T ss_pred cCCCCeEEEEEEeCCCCcceEEEE-----------eccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEec
Confidence 3 3579999987654321100 1111222 367899999987754 21111
Q ss_pred -CCCc---eeeecCCCceeee-eccCCCCCeEEEecCC---CeEEEEEcCCCe--eeeEEeec-cceeceeEEEEcCCCC
Q psy988 239 -SEST---GYVLNATGRKISG-IEPMPGEDKILVTSND---SRIRLYDLRDLN--LSCKYKGY-VNVSSQIKASFSHDGK 307 (408)
Q Consensus 239 -~~~~---~~~~~~~~~~i~~-~~~~~~~~~l~~~~~d---~~i~i~d~~~~~--~~~~~~~~-~~~~~v~~~~~s~~~~ 307 (408)
.... ...+......+.. ++|+||++.|+..+.+ +.+++|++.... ....+... .+...+..++|+|||+
T Consensus 343 ~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~ 422 (723)
T 1xfd_A 343 QPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMD 422 (723)
T ss_dssp SCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSS
T ss_pred cCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCC
Confidence 0111 1222222233443 6899999999766544 789999986432 22223221 0223567899999999
Q ss_pred EEEEe
Q psy988 308 YIVSG 312 (408)
Q Consensus 308 ~l~~~ 312 (408)
+|+..
T Consensus 423 ~l~~~ 427 (723)
T 1xfd_A 423 FFLLK 427 (723)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88864
No 150
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.94 E-value=3.9e-24 Score=182.44 Aligned_cols=252 Identities=10% Similarity=0.073 Sum_probs=187.4
Q ss_pred CceEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEE-EEEeCCCcEEEEecCCCCceeeeeecCCce---------eeE
Q psy988 2 DKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYF-LSGSLDGKLRLWNIPDKKVAVWNEVEGQTK---------LIT 71 (408)
Q Consensus 2 Dg~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l-~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~---------~v~ 71 (408)
++.|.+||..+++.+..+.....+..++|+| +++++ ++...++.|.+||..+++... .+..+.. .+.
T Consensus 68 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~v~~~~~~~v~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 144 (353)
T 3vgz_A 68 GGVVYRLDPVTLEVTQAIHNDLKPFGATINN-TTQTLWFGNTVNSAVTAIDAKTGEVKG--RLVLDDRKRTEEVRPLQPR 144 (353)
T ss_dssp SEEEEEECTTTCCEEEEEEESSCCCSEEEET-TTTEEEEEETTTTEEEEEETTTCCEEE--EEESCCCCCCSSCCCCEEE
T ss_pred CccEEEEcCCCCeEEEEEecCCCcceEEECC-CCCEEEEEecCCCEEEEEeCCCCeeEE--EEecCCCccccccCCCCCc
Confidence 5789999999999999998777899999999 88755 455557999999999988753 3433321 278
Q ss_pred EEEEecCCCEEEEEe--cCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCc
Q psy988 72 AANFCENGKFAVVGS--YDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDL 149 (408)
Q Consensus 72 ~~~~~~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 149 (408)
++.|+|+|+++++++ .++.|.+||..+.+...... .+...+.+++|+|+++.+++++.++.|.+||+.++
T Consensus 145 ~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~--------~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~ 216 (353)
T 3vgz_A 145 ELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQ--------NTGKMSTGLALDSEGKRLYTTNADGELITIDTADN 216 (353)
T ss_dssp EEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEEC--------CCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTT
T ss_pred eEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEec--------CCCCccceEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence 899999999888776 47899999999887654432 11235778999999999999999999999999998
Q ss_pred ccceeecCcc--ccccceEEEEecCCCEEEEeec-CceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCC
Q psy988 150 NLSCKYKGYV--NVSSQIKASFSHDGKYIVSGSE-NQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPC 226 (408)
Q Consensus 150 ~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 226 (408)
+....+.... ....+..++|+|+++++++++. ++.|.+||..++..... +...
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~------------~~~~------------ 272 (353)
T 3vgz_A 217 KILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAK------------VAAP------------ 272 (353)
T ss_dssp EEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEE------------EECS------------
T ss_pred eEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE------------EEcC------------
Confidence 8776655421 1233567899999998777665 48999999865432211 1000
Q ss_pred cceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEE-ecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCC
Q psy988 227 PELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILV-TSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHD 305 (408)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~ 305 (408)
....++|+|+++++++ ...++.|.+||..+++.+..+.... .+..++|+|+
T Consensus 273 -------------------------~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~d 324 (353)
T 3vgz_A 273 -------------------------ESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT---HPNSLALSAD 324 (353)
T ss_dssp -------------------------SCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS---EEEEEEECTT
T ss_pred -------------------------CCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC---CCCeEEEcCC
Confidence 0123555666664444 4578999999999999888776533 4578999999
Q ss_pred CCEEEEecCCc
Q psy988 306 GKYIVSGSENQ 316 (408)
Q Consensus 306 ~~~l~~~~~dg 316 (408)
|++|+++..++
T Consensus 325 g~~l~v~~~~~ 335 (353)
T 3vgz_A 325 GKTLYVSVKQK 335 (353)
T ss_dssp SCEEEEEEECC
T ss_pred CCEEEEEEccc
Confidence 99887766553
No 151
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.94 E-value=2e-25 Score=203.07 Aligned_cols=271 Identities=10% Similarity=0.050 Sum_probs=185.8
Q ss_pred eCCceEEEEEcCCCCCEEEEEeC-CCcEEEEecCCCCceeeeeecCCc-eeeEEEEEecCCCEEEEEec---CCEEEEEe
Q psy988 21 HIDFVTAICFHPRDDRYFLSGSL-DGKLRLWNIPDKKVAVWNEVEGQT-KLITAANFCENGKFAVVGSY---DGRCIFYT 95 (408)
Q Consensus 21 h~~~v~~~~~sp~~~~~l~t~~~-dg~i~iw~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~---dg~i~iw~ 95 (408)
+..+|++++|+| ||++||+++. ||+++||++++++.. .+..|. ..+..+.|+|| +.+++++. +....+|.
T Consensus 20 ~~~~~~~~~~~~-DG~~la~~s~~~g~~~lw~~~~g~~~---~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~ 94 (582)
T 3o4h_A 20 IAVEKYSLQGVV-DGDKLLVVGFSEGSVNAYLYDGGETV---KLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFK 94 (582)
T ss_dssp HHSCEEEEEEEE-TTTEEEEEEEETTEEEEEEEETTEEE---ECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEE
T ss_pred hccchheeecCC-CCCeEEEEEccCCceeEEEEcCCCcE---eeecccccccccccCCCC-eEEEEeccCCCCcceEEEE
Confidence 466899999999 9999999887 999999999776544 455555 68999999999 77777765 45556665
Q ss_pred ccC--CeeeEEEEEeeccccccCCCCeEEEeeCCCCCeE-EEeeCCCeEEEEEccCcccceeecCccccccceEEEEecC
Q psy988 96 TDQ--LKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKI-LVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHD 172 (408)
Q Consensus 96 ~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (408)
+.. ..... ... . .......+|+|+++.+ ++.+.++.+.+||+.+++.......+. .+++|+||
T Consensus 95 ~~~~~~g~~~--~l~---~----~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~-----~~~~~spD 160 (582)
T 3o4h_A 95 VNTSRPGEEQ--RLE---A----VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG-----FGFVSDIR 160 (582)
T ss_dssp EETTSTTCCE--ECT---T----SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS-----CEEEEEEE
T ss_pred EeccCCCccc--ccc---C----CCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC-----ceEEECCC
Confidence 543 22111 111 1 1134456888888643 344445556699999887654443221 57899999
Q ss_pred CCEEEEeecC----ceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecC
Q psy988 173 GKYIVSGSEN----QCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNA 248 (408)
Q Consensus 173 ~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (408)
|++|++++.+ +.|++||+.++.. ..+..+.
T Consensus 161 G~~la~~~~~~~~~~~i~~~d~~~g~~-------------~~l~~~~--------------------------------- 194 (582)
T 3o4h_A 161 GDLIAGLGFFGGGRVSLFTSNLSSGGL-------------RVFDSGE--------------------------------- 194 (582)
T ss_dssp TTEEEEEEEEETTEEEEEEEETTTCCC-------------EEECCSS---------------------------------
T ss_pred CCEEEEEEEcCCCCeEEEEEcCCCCCc-------------eEeecCC---------------------------------
Confidence 9999988877 7899999865321 1222333
Q ss_pred CCceeeeeccCCCCCeEEEecCCC--eEEEEEcCCCeeeeEEeeccceeceeEEE--------EcCCCCEEEEecCCceE
Q psy988 249 TGRKISGIEPMPGEDKILVTSNDS--RIRLYDLRDLNLSCKYKGYVNVSSQIKAS--------FSHDGKYIVSGSENQCI 318 (408)
Q Consensus 249 ~~~~i~~~~~~~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~v~~~~--------~s~~~~~l~~~~~dg~i 318 (408)
..+..++|+|||+.|+++..++ .|++||+.+++.. .+..+.. .+..++ |+|||.++++++.|+.+
T Consensus 195 --~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~ 269 (582)
T 3o4h_A 195 --GSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSK--DFSSYRPTAITWLGYLPDGRLAVVARREGRS 269 (582)
T ss_dssp --CEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCS--HHHHHCCSEEEEEEECTTSCEEEEEEETTEE
T ss_pred --CccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCc--ChhhhhhccccceeEcCCCcEEEEEEcCCcE
Confidence 3344555666666777777788 8999999988876 5554433 334455 99999889999999999
Q ss_pred EEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCC---eEEEEeCCC
Q psy988 319 YIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNG---VIRVFLNKT 395 (408)
Q Consensus 319 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg---~v~iw~~~~ 395 (408)
++|++ + +... .+.+.|.+++|+ +++++++++.+. .+.+|+...
T Consensus 270 ~l~~~--g------------~~~~---~~~~~v~~~~~s-----------------dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 270 AVFID--G------------ERVE---APQGNHGRVVLW-----------------RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp EEEET--T------------EEEC---CCSSEEEEEEEE-----------------TTEEEEEEEETTEEEEEEEETTCC
T ss_pred EEEEE--C------------Ceec---cCCCceEEEEec-----------------CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 99999 3 1221 233568889998 356777777664 466676653
No 152
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.94 E-value=1.6e-24 Score=184.61 Aligned_cols=305 Identities=12% Similarity=0.100 Sum_probs=188.1
Q ss_pred EEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCc-eeeEEEEEecCCCEEE-EEecCCEEEEEeccCCeeeEE
Q psy988 27 AICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQT-KLITAANFCENGKFAV-VGSYDGRCIFYTTDQLKYHTQ 104 (408)
Q Consensus 27 ~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~-~~~~dg~i~iw~~~~~~~~~~ 104 (408)
.+++++ ++.++++++.++.|.+||+.+++.. ..+..+. ..+..++|+|+|++++ +...++.|.+||+.+++....
T Consensus 4 g~~~~~-~~~~~v~~~~~~~v~~~d~~~~~~~--~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~ 80 (349)
T 1jmx_B 4 GPALKA-GHEYMIVTNYPNNLHVVDVASDTVY--KSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFH 80 (349)
T ss_dssp CCCCCT-TCEEEEEEETTTEEEEEETTTTEEE--EEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred cccccC-CCEEEEEeCCCCeEEEEECCCCcEE--EEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEE
Confidence 356788 8899999999999999999988765 3443332 2577899999998665 445689999999998876544
Q ss_pred EEEeeccccccCCCCeEEEeeCCCCCeEEEeeCC------------CeEEEEEccCcccceeecCccccccceEEEEecC
Q psy988 105 IHVRSTRGKNATGRKISGIEPMPGEDKILVTSND------------SRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHD 172 (408)
Q Consensus 105 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (408)
....... ......+..++|+|+++++++++.+ +.|.+||+.+++.............+.+++|+|+
T Consensus 81 ~~~~~~~--~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~d 158 (349)
T 1jmx_B 81 ANLSSVP--GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADD 158 (349)
T ss_dssp EESCCST--TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTT
T ss_pred EEccccc--ccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCC
Confidence 4321100 0001247789999999999998865 8999999998654332222222234667889999
Q ss_pred CCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCce
Q psy988 173 GKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRK 252 (408)
Q Consensus 173 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (408)
|+ +++++ +.|++||..++............. .. ...|+...+ +.. .... .....
T Consensus 159 g~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~--------~~-----~~~~~~~~~---~~~-~~~~------~~~~~ 212 (349)
T 1jmx_B 159 GS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNR--------KG-----YSAPDVLYF---WPH-QSPR------HEFSM 212 (349)
T ss_dssp SC-EEEES--SSEEEECTTTCCEEEEECSTTCCC--------TT-----BCCCBCCCC---CCC-CCTT------CEEEE
T ss_pred Cc-EEEcc--CcEEEEeCCCCceeccccccccCC--------cc-----ccCccceee---ecC-CCcc------eeEEe
Confidence 99 66654 349999987654322111000000 00 000000000 000 0000 00001
Q ss_pred eeeeccCCCCCe-----------EEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcC-CCCEEEEecCCceEEE
Q psy988 253 ISGIEPMPGEDK-----------ILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSH-DGKYIVSGSENQCIYI 320 (408)
Q Consensus 253 i~~~~~~~~~~~-----------l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i 320 (408)
+..+++++++.. +......+.+++|++. .....+..++|+| ++++++++ ++.|.+
T Consensus 213 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~sp~dg~~l~~~--~~~v~~ 279 (349)
T 1jmx_B 213 LYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFA-----------DLTELYFTGLRSPKDPNQIYGV--LNRLAK 279 (349)
T ss_dssp EEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEE-----------ECSSCEEEEEECSSCTTEEEEE--ESEEEE
T ss_pred eeeeeecCCCcCCccccccceeEEEEeccCCcEEecccc-----------cCCCcceeeEecCCCCCEEEEE--cCeEEE
Confidence 223444433321 1122333444444431 1223567899999 99999988 889999
Q ss_pred eeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCCCcc
Q psy988 321 WKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKPKHS 400 (408)
Q Consensus 321 w~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~ 400 (408)
||+.++ +.+..+. ....+.+++|+| +|++|++++.++.|++||+.+++...
T Consensus 280 ~d~~~~------------~~~~~~~-~~~~~~~~~~s~----------------dg~~l~~~~~~~~v~v~d~~~~~~~~ 330 (349)
T 1jmx_B 280 YDLKQR------------KLIKAAN-LDHTYYCVAFDK----------------KGDKLYLGGTFNDLAVFNPDTLEKVK 330 (349)
T ss_dssp EETTTT------------EEEEEEE-CSSCCCEEEECS----------------SSSCEEEESBSSEEEEEETTTTEEEE
T ss_pred EECccC------------eEEEEEc-CCCCccceEECC----------------CCCEEEEecCCCeEEEEeccccceee
Confidence 999876 3333333 234578999999 88888888889999999999988776
Q ss_pred cccc
Q psy988 401 SLPV 404 (408)
Q Consensus 401 ~~~~ 404 (408)
.+++
T Consensus 331 ~~~~ 334 (349)
T 1jmx_B 331 NIKL 334 (349)
T ss_dssp EEEC
T ss_pred eeec
Confidence 6654
No 153
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.94 E-value=5.4e-25 Score=205.41 Aligned_cols=328 Identities=11% Similarity=0.008 Sum_probs=209.9
Q ss_pred EEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCce---eeEEEEEecCCCEEEEEec---------CCEEEE
Q psy988 26 TAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTK---LITAANFCENGKFAVVGSY---------DGRCIF 93 (408)
Q Consensus 26 ~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~---------dg~i~i 93 (408)
.+++|+| +++++++ +.|++|++||+.+++.. ..+.+|.. .+.+++|||||++|++++. ++.|++
T Consensus 19 ~~~~~s~-dg~~~~~-~~d~~i~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~ 94 (719)
T 1z68_A 19 FFPNWIS-GQEYLHQ-SADNNIVLYNIETGQSY--TILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYI 94 (719)
T ss_dssp CCCEESS-SSEEEEE-CTTSCEEEEESSSCCEE--EEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred CccEECC-CCeEEEE-cCCCCEEEEEcCCCcEE--EEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEE
Confidence 3689999 8865555 46999999999998865 34444433 3899999999999998876 789999
Q ss_pred EeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeec-Ccccc-----------
Q psy988 94 YTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYK-GYVNV----------- 161 (408)
Q Consensus 94 w~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~----------- 161 (408)
||+.+++.... ... ...+..++|+|||+.|+++. ++.|++||+.+++...... ++...
T Consensus 95 ~d~~~g~~~~~---~~l------~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ 164 (719)
T 1z68_A 95 YDLSNGEFVRG---NEL------PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYE 164 (719)
T ss_dssp EETTTTEECCS---SCC------CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHH
T ss_pred EECCCCccccc---eec------CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceee
Confidence 99998764110 010 13688899999999999986 6899999998877644321 11110
Q ss_pred ----ccceEEEEecCCCEEEEeecCc----------------------------------eEEEeeeccceee-eeeccc
Q psy988 162 ----SSQIKASFSHDGKYIVSGSENQ----------------------------------CIYIWKTHHDYAK-FSSVRR 202 (408)
Q Consensus 162 ----~~~~~~~~~~~~~~l~~~~~dg----------------------------------~i~i~d~~~~~~~-~~~~~~ 202 (408)
.....++|+|||++|++++.|. .|++||+.++... ....
T Consensus 165 ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~-- 242 (719)
T 1z68_A 165 EEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEV-- 242 (719)
T ss_dssp HHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEEC--
T ss_pred eecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEc--
Confidence 1113689999999999987652 6788888764321 0000
Q ss_pred CCCccccccccccceEEEEEEeCCcceeeeecCCCC---------------CCCceeee----cCCCceee-----eecc
Q psy988 203 DRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDK---------------SESTGYVL----NATGRKIS-----GIEP 258 (408)
Q Consensus 203 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~----~~~~~~i~-----~~~~ 258 (408)
.....+..+...+..++|+||++.++....... ......+. ..+...+. .+.|
T Consensus 243 ---~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (719)
T 1z68_A 243 ---PVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVF 319 (719)
T ss_dssp ---CCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEE
T ss_pred ---cCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEE
Confidence 000224467888999999999876655322111 11111122 23445555 7899
Q ss_pred CCCCCeEEE--ecCCC--eEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCC-----ceEEEeeccccCcc
Q psy988 259 MPGEDKILV--TSNDS--RIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSEN-----QCIYIWKTHHDYAK 329 (408)
Q Consensus 259 ~~~~~~l~~--~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iw~~~~~~~~ 329 (408)
+|||+.++. ...+| .|.+||+.+++ ...+..+. ..+..+.++ +++.|+..+.+ +.+++|.+......
T Consensus 320 spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~--~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~ 395 (719)
T 1z68_A 320 SYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGK--WEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYP 395 (719)
T ss_dssp CTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSS--SCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSS
T ss_pred CCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCc--eEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCC
Confidence 999997654 44444 57777877665 33443322 245566666 77777765544 78899988652100
Q ss_pred ccccccCccccce-eeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEE-EecC--CeEEEEeCCCCCC
Q psy988 330 FSSVRRDRNDFWE-GIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVS-ADFN--GVIRVFLNKTKPK 398 (408)
Q Consensus 330 ~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s-~~~d--g~v~iw~~~~~~~ 398 (408)
. ....+. .+.+|...+..+.|+| ++++++. ++.+ ..+.+|++.+++.
T Consensus 396 ~------~~~~l~~~~~~~~~~~~~~~~s~----------------dg~~l~~~~s~~~~p~~~l~d~~~g~~ 446 (719)
T 1z68_A 396 P------SKKCVTCHLRKERCQYYTASFSD----------------YAKYYALVCYGPGIPISTLHDGRTDQE 446 (719)
T ss_dssp C------CEEESSTTTTTTTBCBEEEEECG----------------GGSSEEEEECCBSSCEEEEECSSSCCE
T ss_pred C------CceeccCccCCCCCceEEEEECC----------------CCCEEEEEcCCCCCCeEEEEECCCCCE
Confidence 0 001111 1223566788899999 6766553 3333 4688888877664
No 154
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.93 E-value=3e-23 Score=176.68 Aligned_cols=262 Identities=11% Similarity=0.027 Sum_probs=173.6
Q ss_pred CceEEEEeccCCeeEeEEEeCC--ceEEEEEcCCCCCEEE-EEeCCCcEEEEecCCCCceeeeeec-CC-----ceeeEE
Q psy988 2 DKTVRLWHISRKECLCCFQHID--FVTAICFHPRDDRYFL-SGSLDGKLRLWNIPDKKVAVWNEVE-GQ-----TKLITA 72 (408)
Q Consensus 2 Dg~i~vwd~~~~~~~~~~~h~~--~v~~~~~sp~~~~~l~-t~~~dg~i~iw~~~~~~~~~~~~~~-~~-----~~~v~~ 72 (408)
|++|++||+.+++.+..+.... .+..++|+| ++++++ ++..++.|.+||+.+++... .+. .+ ...+..
T Consensus 20 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~~~~~i~~~d~~t~~~~~--~~~~~~~~~~~~~~~~~ 96 (349)
T 1jmx_B 20 PNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDTCKNTF--HANLSSVPGEVGRSMYS 96 (349)
T ss_dssp TTEEEEEETTTTEEEEEEECSSCCSSCEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEE--EEESCCSTTEEEECSSC
T ss_pred CCeEEEEECCCCcEEEEEecCCCCCCceeEECC-CCCEEEEEeCCCCcEEEEeCCCCcEEE--EEEcccccccccccccc
Confidence 7899999999999998887545 789999999 887654 55568999999999887653 332 22 344788
Q ss_pred EEEecCCCEEEEEecC------------CEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCe
Q psy988 73 ANFCENGKFAVVGSYD------------GRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSR 140 (408)
Q Consensus 73 ~~~~~~~~~l~~~~~d------------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 140 (408)
++|+|+|++|++++.+ +.|.+||+.+++......... +...+.+++|+|+++ +++++. .
T Consensus 97 ~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~------~~~~~~~~~~s~dg~-l~~~~~--~ 167 (349)
T 1jmx_B 97 FAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP------MPRQVYLMRAADDGS-LYVAGP--D 167 (349)
T ss_dssp EEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE------CCSSCCCEEECTTSC-EEEESS--S
T ss_pred eEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc------CCCcccceeECCCCc-EEEccC--c
Confidence 9999999999998865 899999998754322111111 123578899999999 666543 4
Q ss_pred EEEEEccCcccceeecCccccc----------------------cceEEEEecCCCEEEEeecCc-eEEEeeeccceeee
Q psy988 141 IRLYDLRDLNLSCKYKGYVNVS----------------------SQIKASFSHDGKYIVSGSENQ-CIYIWKTHHDYAKF 197 (408)
Q Consensus 141 i~i~d~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~ 197 (408)
|.+||+.+++....+....... ....+++++++.......... .+..+|..++
T Consensus 168 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~---- 243 (349)
T 1jmx_B 168 IYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTG---- 243 (349)
T ss_dssp EEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTC----
T ss_pred EEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCC----
Confidence 9999999888766554322000 112233333321110000000 1111222211
Q ss_pred eecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCC-CCCeEEEecCCCeEEE
Q psy988 198 SSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMP-GEDKILVTSNDSRIRL 276 (408)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i 276 (408)
.+..+.+. .....+..++++| ++++++++ ++.|.+
T Consensus 244 -------------------~~~~~~~~-----------------------~~~~~~~~~~~sp~dg~~l~~~--~~~v~~ 279 (349)
T 1jmx_B 244 -------------------KTHTQEFA-----------------------DLTELYFTGLRSPKDPNQIYGV--LNRLAK 279 (349)
T ss_dssp -------------------CEEEEEEE-----------------------ECSSCEEEEEECSSCTTEEEEE--ESEEEE
T ss_pred -------------------cEEecccc-----------------------cCCCcceeeEecCCCCCEEEEE--cCeEEE
Confidence 11111111 1234566777888 88888887 889999
Q ss_pred EEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeecccc
Q psy988 277 YDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHD 326 (408)
Q Consensus 277 ~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 326 (408)
||+.+++....+.... .+..++|+|+|++|++++.++.|.+||+.++
T Consensus 280 ~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~ 326 (349)
T 1jmx_B 280 YDLKQRKLIKAANLDH---TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL 326 (349)
T ss_dssp EETTTTEEEEEEECSS---CCCEEEECSSSSCEEEESBSSEEEEEETTTT
T ss_pred EECccCeEEEEEcCCC---CccceEECCCCCEEEEecCCCeEEEEecccc
Confidence 9999998887776432 4568999999999998888999999999875
No 155
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.93 E-value=4e-22 Score=170.39 Aligned_cols=295 Identities=12% Similarity=0.102 Sum_probs=182.9
Q ss_pred CCCEEEEEeC----CCcEEEEecC--CCCceeeeeecCCceeeEEEEEecCCCEEEEEecC----CEEEEEeccCC--ee
Q psy988 34 DDRYFLSGSL----DGKLRLWNIP--DKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYD----GRCIFYTTDQL--KY 101 (408)
Q Consensus 34 ~~~~l~t~~~----dg~i~iw~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iw~~~~~--~~ 101 (408)
...+++.|+. ++.|.+|.++ +++....... +...+..++|+|+|++|++++.+ +.+.+|+++.. +.
T Consensus 12 ~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~ 89 (361)
T 3scy_A 12 SELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTL 89 (361)
T ss_dssp GEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEE
T ss_pred CceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcE
Confidence 4456666643 5689999774 4555543333 66778889999999999999886 79999998763 32
Q ss_pred eEEEEEeeccccccCCCCeEEEeeCCCCCeEEEee-CCCeEEEEEccCcccceeecC---cc---------ccccceEEE
Q psy988 102 HTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTS-NDSRIRLYDLRDLNLSCKYKG---YV---------NVSSQIKAS 168 (408)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~---~~---------~~~~~~~~~ 168 (408)
....... .+......+++ ++++|++++ .++.|.+|++.....+..+.. +. ....+.+++
T Consensus 90 ~~~~~~~------~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 161 (361)
T 3scy_A 90 HLLNTQK------TMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVR 161 (361)
T ss_dssp EEEEEEE------CSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEE
T ss_pred EEeeEec------cCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEE
Confidence 2111111 12235667777 788887776 578999999975433322111 10 011235689
Q ss_pred EecCCCEEEEee-cCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeec
Q psy988 169 FSHDGKYIVSGS-ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLN 247 (408)
Q Consensus 169 ~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (408)
|+|+|+++++++ .++.|++|++........ .. .+... ...... ..
T Consensus 162 ~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~------~~---~l~~~-~~~~~~------------------------~~ 207 (361)
T 3scy_A 162 ITPDGKYLLADDLGTDQIHKFNINPNANADN------KE---KFLTK-GTPEAF------------------------KV 207 (361)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEECTTCCTTT------CC---CCEEE-EEEEEE------------------------EC
T ss_pred ECCCCCEEEEEeCCCCEEEEEEEcCCCCccc------cc---ceeec-ccccce------------------------ec
Confidence 999999776655 478999999864321000 00 00000 000000 00
Q ss_pred CCCceeeeeccCCCCCeEEEec-CCCeEEEEEcCCCeeeeE--Eeec-cceeceeEEEEcCCCCEEEEecC--CceEEEe
Q psy988 248 ATGRKISGIEPMPGEDKILVTS-NDSRIRLYDLRDLNLSCK--YKGY-VNVSSQIKASFSHDGKYIVSGSE--NQCIYIW 321 (408)
Q Consensus 248 ~~~~~i~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~--~~~~-~~~~~v~~~~~s~~~~~l~~~~~--dg~i~iw 321 (408)
.....+..++|+|+|+++++++ .++.|.+||+.+++.... +... .+......++|+|||++|+++.. ++.|.+|
T Consensus 208 ~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~ 287 (361)
T 3scy_A 208 APGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIF 287 (361)
T ss_dssp CTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEE
T ss_pred CCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEE
Confidence 1223455677778887776665 689999999987765322 2221 11223568999999999877655 4899999
Q ss_pred eccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEe-cCCeEEEEeCC--CCC
Q psy988 322 KTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSAD-FNGVIRVFLNK--TKP 397 (408)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~-~dg~v~iw~~~--~~~ 397 (408)
++...... ...+..+.. ...+.+++|+| ||++|++++ .++.|.+|++. +++
T Consensus 288 ~~~~~~g~--------~~~~~~~~~-g~~~~~~~~sp----------------dg~~l~~~~~~~~~v~v~~~d~~~g~ 341 (361)
T 3scy_A 288 KVDETNGT--------LTKVGYQLT-GIHPRNFIITP----------------NGKYLLVACRDTNVIQIFERDQATGL 341 (361)
T ss_dssp EECTTTCC--------EEEEEEEEC-SSCCCEEEECT----------------TSCEEEEEETTTTEEEEEEECTTTCC
T ss_pred EEcCCCCc--------EEEeeEecC-CCCCceEEECC----------------CCCEEEEEECCCCCEEEEEEECCCCc
Confidence 99632110 012333333 45678999999 899888877 67999996554 554
No 156
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.93 E-value=2.9e-23 Score=179.46 Aligned_cols=299 Identities=12% Similarity=0.104 Sum_probs=191.3
Q ss_pred EEeccCCeeEeEEE-eCCceEE-----EEEcCCCCCEEEEEeC-CCc--EEEEecCCCCceeeeeecCCceeeEEEEEec
Q psy988 7 LWHISRKECLCCFQ-HIDFVTA-----ICFHPRDDRYFLSGSL-DGK--LRLWNIPDKKVAVWNEVEGQTKLITAANFCE 77 (408)
Q Consensus 7 vwd~~~~~~~~~~~-h~~~v~~-----~~~sp~~~~~l~t~~~-dg~--i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~ 77 (408)
.+|..++..+..+. |...... .+|+| ||++|+.++. +|. |.+||+.+++.. ....++...+..+.|+|
T Consensus 14 ~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~g~~~l~~~d~~~g~~~--~lt~~~~~~~~~~~~sp 90 (388)
T 3pe7_A 14 YQDASTGAQVTRLTPPDVTCHRNYFYQKCFTR-DGSKLLFGGAFDGPWNYYLLDLNTQVAT--QLTEGRGDNTFGGFLSP 90 (388)
T ss_dssp EECTTTCCEEEECSCTTSCEECCCTTSCCBCT-TSCEEEEEECTTSSCEEEEEETTTCEEE--ECCCSSCBCSSSCEECT
T ss_pred EecCCCCcceEEecCCcccccchhhcCccCCC-CCCEEEEEEcCCCCceEEEEeCCCCceE--EeeeCCCCCccceEEcC
Confidence 35777777777765 6655665 89999 9999998887 664 888898888765 34455555555678999
Q ss_pred CCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEE--EeeCCCCCeEEEe--------------------
Q psy988 78 NGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISG--IEPMPGEDKILVT-------------------- 135 (408)
Q Consensus 78 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~l~~~-------------------- 135 (408)
||+.|+.++.++.|++||+.+++....... +...+.. ..++|++..++..
T Consensus 91 dg~~l~~~~~~~~l~~~d~~~g~~~~~~~~--------~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~ 162 (388)
T 3pe7_A 91 DDDALFYVKDGRNLMRVDLATLEENVVYQV--------PAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFY 162 (388)
T ss_dssp TSSEEEEEETTTEEEEEETTTCCEEEEEEC--------CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHG
T ss_pred CCCEEEEEeCCCeEEEEECCCCcceeeeec--------hhhcccccceeECCCCCeeccccccCcccccccccchhhhhh
Confidence 999999999999999999998775443221 1122322 3348888887742
Q ss_pred --eCCCeEEEEEccCcccceeecCccccccceEEEEec-CCCEEEEeecC------ceEEEeeeccceeeeeecccCCCc
Q psy988 136 --SNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSH-DGKYIVSGSEN------QCIYIWKTHHDYAKFSSVRRDRND 206 (408)
Q Consensus 136 --~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~ 206 (408)
..+..|++||+.+++...... +. ..+..+.|+| +|+.|+....+ ..|.++|......
T Consensus 163 ~~~~~~~l~~~d~~~g~~~~l~~-~~--~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~----------- 228 (388)
T 3pe7_A 163 FTKPCCRLMRVDLKTGESTVILQ-EN--QWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM----------- 228 (388)
T ss_dssp GGCCCEEEEEEETTTCCEEEEEE-ES--SCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-----------
T ss_pred ccCCcceEEEEECCCCceEEeec-CC--ccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-----------
Confidence 234689999999886544332 22 2356789999 99998877653 2677776643211
Q ss_pred ccccccccc--ceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecC-----CCeEEEEEc
Q psy988 207 FWEGIKAHN--AVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSN-----DSRIRLYDL 279 (408)
Q Consensus 207 ~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----d~~i~i~d~ 279 (408)
..+..+. ..+....|+|+|+. |+..+. +..|++||+
T Consensus 229 --~~l~~~~~~~~~~~~~~spdg~~-----------------------------------l~~~~~~~~~~~~~l~~~d~ 271 (388)
T 3pe7_A 229 --RKVKTHAEGESCTHEFWVPDGSA-----------------------------------LVYVSYLKGSPDRFIYSADP 271 (388)
T ss_dssp --EESCCCCTTEEEEEEEECTTSSC-----------------------------------EEEEEEETTCCCEEEEEECT
T ss_pred --EEeeeCCCCcccccceECCCCCE-----------------------------------EEEEecCCCCCcceEEEEec
Confidence 1111111 23444455555444 433221 224999999
Q ss_pred CCCeeeeE--Eeeccce-eceeEEEEcCCCCEEEEe---------cCCceEEEeeccccCccccccccCccccceeeeee
Q psy988 280 RDLNLSCK--YKGYVNV-SSQIKASFSHDGKYIVSG---------SENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAH 347 (408)
Q Consensus 280 ~~~~~~~~--~~~~~~~-~~v~~~~~s~~~~~l~~~---------~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h 347 (408)
.+++.... +..+.+. .......|+|||+.|+.. ..+..|++||+.++ .+..+..|
T Consensus 272 ~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~-------------~~~~l~~~ 338 (388)
T 3pe7_A 272 ETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNG-------------TQHRVARH 338 (388)
T ss_dssp TTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTT-------------EEEEEEEC
T ss_pred CCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCC-------------ceEEeccc
Confidence 98875433 2221110 001124799999988854 45678999999875 22345555
Q ss_pred cc-----------ceEEEEecCCchhhhhccCCCCCCCcccEEEEEe-cCCeEEEEeCCCC
Q psy988 348 NA-----------VVTCAVFAPCPELIIAQMEPDKSESTGYVLVSAD-FNGVIRVFLNKTK 396 (408)
Q Consensus 348 ~~-----------~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~-~dg~v~iw~~~~~ 396 (408)
.. .+.+++|+| ||+.|+.++ .+|...||.+.-.
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~sp----------------Dg~~l~~~s~~~g~~~l~~~~l~ 383 (388)
T 3pe7_A 339 DTSWKVFEGDRQVTHPHPSFTP----------------DDKQILFTSDVHGKPALYLATLP 383 (388)
T ss_dssp CCCCCCBTTBSSTTCCCCEECT----------------TSSEEEEEECTTSSCEEEEEECC
T ss_pred cCcccccccccccCCCCccCCC----------------CCCEEEEEecCCCceeEEEEECC
Confidence 54 578899999 888777555 5787777766543
No 157
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.92 E-value=2.7e-22 Score=174.45 Aligned_cols=197 Identities=10% Similarity=0.061 Sum_probs=136.5
Q ss_pred CCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCC-----------cee--eeeecCCceeeEEEEEecCCCEEE----E
Q psy988 22 IDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKK-----------VAV--WNEVEGQTKLITAANFCENGKFAV----V 84 (408)
Q Consensus 22 ~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~-----------~~~--~~~~~~~~~~v~~~~~~~~~~~l~----~ 84 (408)
...++.+++++ ++.++++++.|+ +++|+..... ... ......+...|.+++|+|+|++|+ +
T Consensus 36 ~~~~n~lavs~-~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~s 113 (434)
T 2oit_A 36 KERSSLLAVSN-KYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMS 113 (434)
T ss_dssp CSCCBCEEEET-TTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEE
T ss_pred CCCccEEEEec-CCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEec
Confidence 34689999999 888999999887 9998763210 000 001123456799999999999999 7
Q ss_pred EecCCEEEEEeccCC-----eeeEEEEEeeccccccCCCCeEEEeeCCC-CCeEEEeeCCCeEEEEEccCcccceeecCc
Q psy988 85 GSYDGRCIFYTTDQL-----KYHTQIHVRSTRGKNATGRKISGIEPMPG-EDKILVTSNDSRIRLYDLRDLNLSCKYKGY 158 (408)
Q Consensus 85 ~~~dg~i~iw~~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 158 (408)
++.|+.|++||+.+. +.... ........+|...|.+++|+|+ +..|++++.||.|++||++++........|
T Consensus 114 gs~d~~v~iwd~~~~~~~~~~~~~~--~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~ 191 (434)
T 2oit_A 114 SEYGSIIAFFDVRTFSNEAKQQKRP--FAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPS 191 (434)
T ss_dssp TTTEEEEEEEEHHHHHCTTCSSCCC--SEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECG
T ss_pred cCCCceEEEEEccccccCCcCCcce--eeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCC
Confidence 888999999998764 11000 0011122346679999999998 788999999999999999988655444444
Q ss_pred cccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCccee
Q psy988 159 VNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELI 230 (408)
Q Consensus 159 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 230 (408)
. ..+.+++|+|+|++|++|+.||.|++||.+ +......... ......|...+.++.|++++.++
T Consensus 192 ~--~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~-----~~~~~~~~~~v~~v~w~~~~~~l 255 (434)
T 2oit_A 192 T--VAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCP-----PFYESDHPVRVLDVLWIGTYVFA 255 (434)
T ss_dssp G--GCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCC-----TTCCTTSCEEEEEEEEEETTEEE
T ss_pred C--CceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCC-----cccCCCCceeEEEEEEecCceEE
Confidence 3 458899999999999999999999999987 2211110000 00001233467777777765554
No 158
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.92 E-value=1.4e-22 Score=172.12 Aligned_cols=292 Identities=10% Similarity=0.098 Sum_probs=190.5
Q ss_pred CceEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeC----------CCcEEEEecCCCCceeeeeecC----C
Q psy988 2 DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSL----------DGKLRLWNIPDKKVAVWNEVEG----Q 66 (408)
Q Consensus 2 Dg~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~----------dg~i~iw~~~~~~~~~~~~~~~----~ 66 (408)
|+.|.+||..+++.+..+. +..+ .++|+| ++++|+++.. ++.|.+||..+.+......+.. +
T Consensus 30 d~~v~v~D~~t~~~~~~i~~g~~p--~i~~sp-dg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~ 106 (361)
T 2oiz_A 30 ESRVHVYDYTNGKFLGMVPTAFNG--HVQVSN-DGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQG 106 (361)
T ss_dssp GCEEEEEETTTCCEEEEEECCEEE--EEEECT-TSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCB
T ss_pred cCeEEEEECCCCeEEEEecCCCCC--ceEECC-CCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccccc
Confidence 6799999999999988876 4444 899999 9999988863 6779999998877653222211 2
Q ss_pred ceeeEEEEEecCCCEEEEEec--CCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCC-CeEEEeeCCCeEEE
Q psy988 67 TKLITAANFCENGKFAVVGSY--DGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGE-DKILVTSNDSRIRL 143 (408)
Q Consensus 67 ~~~v~~~~~~~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i 143 (408)
......++|+|+|++|+++.. ++.|.+||+.+.+....+ ... .....+.+.|++ ..+++.+.||.+.+
T Consensus 107 g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~----i~~-----~~~~~v~~~p~~~~~~~~~~~dg~~~~ 177 (361)
T 2oiz_A 107 LNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDV----TAA-----AGCWSVIPQPNRPRSFMTICGDGGLLT 177 (361)
T ss_dssp CCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEE----GGG-----TTEEEEEECTTSSSEEEEEETTSSEEE
T ss_pred CCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEE----ecC-----CCcceeEEcCCCCeeEEEECCCCcEEE
Confidence 245677899999999999875 579999999988654320 110 112224566765 56777788999999
Q ss_pred EEccC-ccccee------ecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccc
Q psy988 144 YDLRD-LNLSCK------YKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNA 216 (408)
Q Consensus 144 ~d~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (408)
|+... ++.... +..... ...+.+++++..++..+.++.++++|+..+...... .+.....
T Consensus 178 v~~~~~g~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~----------~~~~~~~ 244 (361)
T 2oiz_A 178 INLGEDGKVASQSRSKQMFSVKDD---PIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDG----------PWSLLND 244 (361)
T ss_dssp EEECTTSSEEEEEECCCCSCTTTS---CBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEE----------EEESCCH
T ss_pred EEECCCCcEeeeccccceEcCCCC---ceEEEecccCCEEEEEeCCCeEEEEEecCCCceecc----------cccccCc
Confidence 99865 443311 111111 123445778877777778899999998643211100 0000000
Q ss_pred eEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecC-----------CCeEEEEEcCCCeee
Q psy988 217 VVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSN-----------DSRIRLYDLRDLNLS 285 (408)
Q Consensus 217 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----------d~~i~i~d~~~~~~~ 285 (408)
......|.|.+ ...++++|+++.++++.. .+.|.+||+.+++.+
T Consensus 245 ~~~~~~~~p~g-------------------------~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v 299 (361)
T 2oiz_A 245 EDKAKNWVPGG-------------------------YNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRV 299 (361)
T ss_dssp HHHHTTCEECC-------------------------SSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEE
T ss_pred cccccccccCC-------------------------eeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEE
Confidence 00000000110 111445666555555432 358999999999999
Q ss_pred eEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecC
Q psy988 286 CKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAP 358 (408)
Q Consensus 286 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 358 (408)
..+..+. +..++|+|||++|++++. +.|.+||..++.. +.+..+..+......++++|
T Consensus 300 ~~i~~~~----p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l----------~~~~~i~~~G~~P~~~~~~p 357 (361)
T 2oiz_A 300 ARIPGRD----ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEP----------KLLRTIEGAAEASLQVQFHP 357 (361)
T ss_dssp EEEECTT----CCEEEEETTTTEEEEECS-SCEEEEECSSSSC----------EEEEEETTSCSSEEEEEECC
T ss_pred EEEecCC----eeEEEECCCCCEEEEeCC-CeEEEEECCCCcc----------eeeEEeccCCCCcEEEEecC
Confidence 9888754 678999999999999887 9999999987511 23344444566678899999
No 159
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.92 E-value=5.9e-22 Score=169.31 Aligned_cols=280 Identities=8% Similarity=0.062 Sum_probs=176.1
Q ss_pred ceEEEEec--cCCeeEeEEE----eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecC-CCCceeeeeecCCceeeEEEEE
Q psy988 3 KTVRLWHI--SRKECLCCFQ----HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIP-DKKVAVWNEVEGQTKLITAANF 75 (408)
Q Consensus 3 g~i~vwd~--~~~~~~~~~~----h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~-~~~~~~~~~~~~~~~~v~~~~~ 75 (408)
+.|.+|++ .+++...... ....+..++|+| ++++|++++.+ .|.+|++. +++.........+ +.+..++|
T Consensus 14 ~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~sp-dg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~-g~~~~~~~ 90 (365)
T 1jof_A 14 GAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDH-ERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG-GHPRANDA 90 (365)
T ss_dssp CEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECT-TSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC-SSGGGGCT
T ss_pred CcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECC-CCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC-CCCccEEE
Confidence 45777665 4665533222 334788999999 99999999887 99999997 6655422222211 22556889
Q ss_pred ecCCCE--EEEEe-------------cCCEEEEEeccC-CeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeC-C
Q psy988 76 CENGKF--AVVGS-------------YDGRCIFYTTDQ-LKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSN-D 138 (408)
Q Consensus 76 ~~~~~~--l~~~~-------------~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d 138 (408)
+|+|++ ++++. .+|.+.+|++.. ++......... ..+...+.+++|+|++++++++.. +
T Consensus 91 spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~----~~~~~~~~~~~~spdG~~l~~~~~~~ 166 (365)
T 1jof_A 91 DTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYE----YQENTGIHGMVFDPTETYLYSADLTA 166 (365)
T ss_dssp TSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEE----CCTTCCEEEEEECTTSSEEEEEETTT
T ss_pred CCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEE----eCCCCcceEEEECCCCCEEEEEcCCC
Confidence 999994 45553 689999999974 44332222111 112357899999999998888754 6
Q ss_pred CeEEEEEcc-Ccccce--eecCccccccceEEEEecCCCEEEEeec-CceEEEeeecc--ceeeeeecccCCCccccccc
Q psy988 139 SRIRLYDLR-DLNLSC--KYKGYVNVSSQIKASFSHDGKYIVSGSE-NQCIYIWKTHH--DYAKFSSVRRDRNDFWEGIK 212 (408)
Q Consensus 139 g~i~i~d~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~--~~~~~~~~~~~~~~~~~~~~ 212 (408)
+.|++||+. +++... .+....+...+..++|+|+|+++++++. ++.|.+|++.. +.....
T Consensus 167 ~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~-------------- 232 (365)
T 1jof_A 167 NKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYT-------------- 232 (365)
T ss_dssp TEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEE--------------
T ss_pred CEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEc--------------
Confidence 799999998 665432 2221111234678999999999888765 68999998753 211000
Q ss_pred cccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCC------ceeeeec-cCCCCCeEEEecCC-C-----eEEEEEc
Q psy988 213 AHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATG------RKISGIE-PMPGEDKILVTSND-S-----RIRLYDL 279 (408)
Q Consensus 213 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~i~~~~-~~~~~~~l~~~~~d-~-----~i~i~d~ 279 (408)
...+...|.+ ...+. ..+..++ |+|||++|+++..+ + .|.+|++
T Consensus 233 -----~~~~~~~~~~------------------~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~ 289 (365)
T 1jof_A 233 -----HHSFPLIPPG------------------IPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKL 289 (365)
T ss_dssp -----EEEEESSCTT------------------CCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEE
T ss_pred -----cceEEcCCCC------------------cCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEE
Confidence 0000000000 00001 1456677 77777777765432 2 8999999
Q ss_pred C-CCeeeeEEe-eccceeceeEEEEcC---CCCEEEEecCC-ceEEEeecccc
Q psy988 280 R-DLNLSCKYK-GYVNVSSQIKASFSH---DGKYIVSGSEN-QCIYIWKTHHD 326 (408)
Q Consensus 280 ~-~~~~~~~~~-~~~~~~~v~~~~~s~---~~~~l~~~~~d-g~i~iw~~~~~ 326 (408)
. +++...... ..........++|+| ||++|++++.+ +.|.+|++...
T Consensus 290 ~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 290 RDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp CTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 6 566543211 111122345789999 89999998864 89999998764
No 160
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.91 E-value=2.8e-23 Score=193.89 Aligned_cols=308 Identities=11% Similarity=0.026 Sum_probs=195.9
Q ss_pred CceEEEEeccCCeeEeEEEeCC----ceEEEEEcCCCCCEEEEEeC---------CCcEEEEecCCCCceeeeeecCCce
Q psy988 2 DKTVRLWHISRKECLCCFQHID----FVTAICFHPRDDRYFLSGSL---------DGKLRLWNIPDKKVAVWNEVEGQTK 68 (408)
Q Consensus 2 Dg~i~vwd~~~~~~~~~~~h~~----~v~~~~~sp~~~~~l~t~~~---------dg~i~iw~~~~~~~~~~~~~~~~~~ 68 (408)
|++|++||+.+++....+.+.. .|.+++||| ||++|++++. ++.|++||+.+++......+ ..
T Consensus 35 d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~ 110 (719)
T 1z68_A 35 DNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSP-DRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PR 110 (719)
T ss_dssp TSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECT-TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CS
T ss_pred CCCEEEEEcCCCcEEEEEccccccccceeeEEECC-CCCeEEEEecCceeEEeecceEEEEEECCCCccccceec---Cc
Confidence 7899999999999988887433 399999999 9999998876 78999999998876211122 24
Q ss_pred eeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeecc-ccccCC---------CCeEEEeeCCCCCeEEEeeCC
Q psy988 69 LITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTR-GKNATG---------RKISGIEPMPGEDKILVTSND 138 (408)
Q Consensus 69 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~~~---------~~v~~~~~~~~~~~l~~~~~d 138 (408)
.+..++|||||+.|+.+. ++.|++|++.+++........... ...++. ....+++|+|||+.|++++.|
T Consensus 111 ~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d 189 (719)
T 1z68_A 111 PIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFN 189 (719)
T ss_dssp SBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEE
T ss_pred ccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEEC
Confidence 588899999999999885 789999999887643211000000 000111 122589999999999998754
Q ss_pred C----------------------------------eEEEEEccCcccc--eeecC----ccccccceEEEEecCCCEEEE
Q psy988 139 S----------------------------------RIRLYDLRDLNLS--CKYKG----YVNVSSQIKASFSHDGKYIVS 178 (408)
Q Consensus 139 g----------------------------------~i~i~d~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~l~~ 178 (408)
. .|++||+.+++.. ..+.. ..+...+..++|+||++.+++
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~ 269 (719)
T 1z68_A 190 DTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQ 269 (719)
T ss_dssp CTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEE
T ss_pred CCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEE
Confidence 2 7889999887653 11111 012234678999999877766
Q ss_pred eecC----ceEEEee----eccceeeeeecccCCCcccccc----ccccceEE-----EEEEeCCcceeeee-cCCCC--
Q psy988 179 GSEN----QCIYIWK----THHDYAKFSSVRRDRNDFWEGI----KAHNAVVT-----CAVFAPCPELIIAQ-MEPDK-- 238 (408)
Q Consensus 179 ~~~d----g~i~i~d----~~~~~~~~~~~~~~~~~~~~~~----~~~~~~v~-----~~~~~~~~~~~~~~-~~~~~-- 238 (408)
.... ..|.+|| ..++... ..+ ..+...+. .+.|+|+|+.++.. .....
T Consensus 270 ~~~~~~~~~~l~~~d~~~~~~~g~~~------------~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~ 337 (719)
T 1z68_A 270 WLKRVQNVSVLSICDFREDWQTWDCP------------KTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYK 337 (719)
T ss_dssp EEESSTTEEEEEEEEECSSSSSEECC------------GGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCE
T ss_pred EeccccCeEEEEEEcccCCCCCCceE------------EEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCce
Confidence 4432 3588888 5543211 112 23444444 67899999977652 11111
Q ss_pred -------CCCceeeecCCCceeeeeccCCCCCeEEEecCC-----CeEEEEEcCC--Cee-eeEEeec-c-ceeceeEEE
Q psy988 239 -------SESTGYVLNATGRKISGIEPMPGEDKILVTSND-----SRIRLYDLRD--LNL-SCKYKGY-V-NVSSQIKAS 301 (408)
Q Consensus 239 -------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~--~~~-~~~~~~~-~-~~~~v~~~~ 301 (408)
.......+..+...+..+.++ +++.|+..+.+ +..++|.+.. +.. ...+... . +...+..+.
T Consensus 338 ~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~ 416 (719)
T 1z68_A 338 HIHYIKDTVENAIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTAS 416 (719)
T ss_dssp EEEEESSCSTTCEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEE
T ss_pred EEEEEECCCCceEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEE
Confidence 111122233334456666666 77777766554 7888888754 321 2222210 0 122456789
Q ss_pred EcCCCCEEEE-ecCC--ceEEEeeccccC
Q psy988 302 FSHDGKYIVS-GSEN--QCIYIWKTHHDY 327 (408)
Q Consensus 302 ~s~~~~~l~~-~~~d--g~i~iw~~~~~~ 327 (408)
|+|++++++. ++.. ..+.+||+.++.
T Consensus 417 ~s~dg~~l~~~~s~~~~p~~~l~d~~~g~ 445 (719)
T 1z68_A 417 FSDYAKYYALVCYGPGIPISTLHDGRTDQ 445 (719)
T ss_dssp ECGGGSSEEEEECCBSSCEEEEECSSSCC
T ss_pred ECCCCCEEEEEcCCCCCCeEEEEECCCCC
Confidence 9999998774 3333 468899887654
No 161
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.91 E-value=2.5e-21 Score=165.48 Aligned_cols=284 Identities=11% Similarity=0.109 Sum_probs=175.8
Q ss_pred EEEEEeCC--CcEEEEecC--CCCceeeeeec-CCceeeEEEEEecCCCEEEEEecCCEEEEEecc-CCeeeEEEEEeec
Q psy988 37 YFLSGSLD--GKLRLWNIP--DKKVAVWNEVE-GQTKLITAANFCENGKFAVVGSYDGRCIFYTTD-QLKYHTQIHVRST 110 (408)
Q Consensus 37 ~l~t~~~d--g~i~iw~~~--~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~~~ 110 (408)
+++.|+.. +.|.+|+++ +++........ .....+..++|+|+|++|++++.+ .|.+|++. +++........ .
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~-~ 81 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHP-I 81 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEE-C
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEee-c
Confidence 45666653 568887763 45443222221 233467889999999999999888 99999997 65543221111 0
Q ss_pred cccccCCCCeEEEeeCCCCCe--EEEee-------------CCCeEEEEEcc-CcccceeecC--ccccccceEEEEecC
Q psy988 111 RGKNATGRKISGIEPMPGEDK--ILVTS-------------NDSRIRLYDLR-DLNLSCKYKG--YVNVSSQIKASFSHD 172 (408)
Q Consensus 111 ~~~~~~~~~v~~~~~~~~~~~--l~~~~-------------~dg~i~i~d~~-~~~~~~~~~~--~~~~~~~~~~~~~~~ 172 (408)
. +.+.+++|+|++++ ++++. .++.+.+|++. +++....+.. +.....+..++|+|+
T Consensus 82 -----~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spd 155 (365)
T 1jof_A 82 -----G-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPT 155 (365)
T ss_dssp -----C-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTT
T ss_pred -----C-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCC
Confidence 0 12456899999995 44543 68999999997 4554433321 112234678999999
Q ss_pred CCEEEEeec-CceEEEeeec-cceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCC
Q psy988 173 GKYIVSGSE-NQCIYIWKTH-HDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATG 250 (408)
Q Consensus 173 ~~~l~~~~~-dg~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (408)
|++++++.. ++.|++||+. ++.... +..+.+ ..+.
T Consensus 156 G~~l~~~~~~~~~v~~~~~~~~g~~~~--------------------~~~~~~-----------------------~~~g 192 (365)
T 1jof_A 156 ETYLYSADLTANKLWTHRKLASGEVEL--------------------VGSVDA-----------------------PDPG 192 (365)
T ss_dssp SSEEEEEETTTTEEEEEEECTTSCEEE--------------------EEEEEC-----------------------SSTT
T ss_pred CCEEEEEcCCCCEEEEEEECCCCCEEE--------------------eeeEec-----------------------CCCC
Confidence 998887754 6799999986 332110 000000 0112
Q ss_pred ceeeeeccCCCCCeEEEec-CCCeEEEEEcC--CCeeee---EEeecc----cee-------ceeEEE-EcCCCCEEEEe
Q psy988 251 RKISGIEPMPGEDKILVTS-NDSRIRLYDLR--DLNLSC---KYKGYV----NVS-------SQIKAS-FSHDGKYIVSG 312 (408)
Q Consensus 251 ~~i~~~~~~~~~~~l~~~~-~d~~i~i~d~~--~~~~~~---~~~~~~----~~~-------~v~~~~-~s~~~~~l~~~ 312 (408)
..+..++|+|+|+++++++ .++.|.+|++. +++... .+.... ... .+..++ |+|||++|+++
T Consensus 193 ~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~ 272 (365)
T 1jof_A 193 DHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFAS 272 (365)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEE
T ss_pred CCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEE
Confidence 3456667777777777665 47899999875 455432 222111 111 367899 99999998876
Q ss_pred cCCc------eEEEeecc-ccCccccccccCccccce---eeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEE
Q psy988 313 SENQ------CIYIWKTH-HDYAKFSSVRRDRNDFWE---GIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSA 382 (408)
Q Consensus 313 ~~dg------~i~iw~~~-~~~~~~~~~~~~~~~~~~---~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~ 382 (408)
+.+. .|.+|++. ++ +... ....+...+..++|+|.. | ||++|+++
T Consensus 273 ~~~~~~~~~~~i~v~~~~~~g------------~~~~~~~~~~~~~~~~~~~a~sp~~-----------~--dg~~l~v~ 327 (365)
T 1jof_A 273 SRANKFELQGYIAGFKLRDCG------------SIEKQLFLSPTPTSGGHSNAVSPCP-----------W--SDEWMAIT 327 (365)
T ss_dssp EEESSTTSCCEEEEEEECTTS------------CEEEEEEEEECSSCCTTCCCEEECT-----------T--CTTEEEEE
T ss_pred CCCCCCCCCCeEEEEEECCCC------------CEEEeeeeeecCCCCcccceecCCC-----------c--CCCEEEEE
Confidence 5432 89999996 33 1111 122234456678888810 0 27788888
Q ss_pred ec-CCeEEEEeCCCC
Q psy988 383 DF-NGVIRVFLNKTK 396 (408)
Q Consensus 383 ~~-dg~v~iw~~~~~ 396 (408)
+. ++.|++|++...
T Consensus 328 ~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 328 DDQEGWLEIYRWKDE 342 (365)
T ss_dssp CSSSCEEEEEEEETT
T ss_pred EcCCCeEEEEEEchh
Confidence 76 489999998754
No 162
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.90 E-value=2.7e-22 Score=174.51 Aligned_cols=211 Identities=12% Similarity=0.084 Sum_probs=143.5
Q ss_pred CeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccc----------eeecC---ccccccceEEEEecCCCEEE----Eeec
Q psy988 119 KISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLS----------CKYKG---YVNVSSQIKASFSHDGKYIV----SGSE 181 (408)
Q Consensus 119 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----------~~~~~---~~~~~~~~~~~~~~~~~~l~----~~~~ 181 (408)
.+..+++++++..+++++.++ +++|+....... ..... ......+.+++|+|++++|+ +++.
T Consensus 38 ~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~ 116 (434)
T 2oit_A 38 RSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEY 116 (434)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTT
T ss_pred CccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCC
Confidence 578899999999999998887 999886432110 00000 01123488999999999999 7888
Q ss_pred CceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCC
Q psy988 182 NQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPG 261 (408)
Q Consensus 182 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 261 (408)
|+.|++||+.+........ .........+. .|...|.+++|+|+
T Consensus 117 d~~v~iwd~~~~~~~~~~~-~~~~~~~~~~~-----------------------------------~h~~~V~~v~~~p~ 160 (434)
T 2oit_A 117 GSIIAFFDVRTFSNEAKQQ-KRPFAYHKLLK-----------------------------------DAGGMVIDMKWNPT 160 (434)
T ss_dssp EEEEEEEEHHHHHCTTCSS-CCCSEEEECCC-----------------------------------SGGGSEEEEEECSS
T ss_pred CceEEEEEccccccCCcCC-cceeeeeeccC-----------------------------------CCCCceEEEEECCC
Confidence 9999999986531000000 00000012222 34445555555665
Q ss_pred -CCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCcccc
Q psy988 262 -EDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDF 340 (408)
Q Consensus 262 -~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 340 (408)
+.+|++++.||+|++||++++.......+|. ..+.+++|+|+|++|++|+.||.|++||++ +. .
T Consensus 161 ~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~--~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~------------~ 225 (434)
T 2oit_A 161 VPSMVAVCLADGSIAVLQVTETVKVCATLPST--VAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQ------------E 225 (434)
T ss_dssp CTTEEEEEETTSCEEEEEESSSEEEEEEECGG--GCEEEEEECTTSSCEEEEETTSCEEEECTT-CC------------E
T ss_pred CCCEEEEEECCCeEEEEEcCCCcceeeccCCC--CceeEEEEcCCCCEEEEEcCCCcEEEEccC-Cc------------c
Confidence 5678999999999999999987665555544 378999999999999999999999999987 21 1
Q ss_pred ceeee-------eeccceEEEEecCCchhhhhccCCCCCCCcccEEEEE-ecCC------eEEEEeCCCCC
Q psy988 341 WEGIK-------AHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSA-DFNG------VIRVFLNKTKP 397 (408)
Q Consensus 341 ~~~~~-------~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~-~~dg------~v~iw~~~~~~ 397 (408)
...+. .|...|.+++|++ ++.++++. ..|| .+++|++...+
T Consensus 226 ~~~~~~~~~~~~~~~~~v~~v~w~~----------------~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~ 280 (434)
T 2oit_A 226 KKVIPCPPFYESDHPVRVLDVLWIG----------------TYVFAIVYAAADGTLETSPDVVMALLPKKE 280 (434)
T ss_dssp EEEECCCTTCCTTSCEEEEEEEEEE----------------TTEEEEEEEETTCCSSSCCEEEEEECCCTT
T ss_pred cccccCCcccCCCCceeEEEEEEec----------------CceEEEEEccCCCccCCCCceEEEEeccCC
Confidence 11111 2345899999999 77776543 3443 38999998754
No 163
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.89 E-value=1.4e-21 Score=169.44 Aligned_cols=300 Identities=11% Similarity=0.080 Sum_probs=184.6
Q ss_pred EEeccCCeeEeEEE-eC-----CceEEEEEcCCCCCEEEEEeCC---CcEEEEecCCCCceeeeeecCCcee-eEEEEEe
Q psy988 7 LWHISRKECLCCFQ-HI-----DFVTAICFHPRDDRYFLSGSLD---GKLRLWNIPDKKVAVWNEVEGQTKL-ITAANFC 76 (408)
Q Consensus 7 vwd~~~~~~~~~~~-h~-----~~v~~~~~sp~~~~~l~t~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~-v~~~~~~ 76 (408)
..|..+++.+..+. +. ..+..++|+| +|++|+..... ..|.+||+.+++.. .+..+... ...+.|+
T Consensus 14 ~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~Sp-dG~~l~~~~~~~g~~~l~~~d~~~~~~~---~l~~~~~~~~~~~~~s 89 (396)
T 3c5m_A 14 FVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQ-DGKKLLFAGDFDGNRNYYLLNLETQQAV---QLTEGKGDNTFGGFIS 89 (396)
T ss_dssp EECTTTCCEEEECSCTTSCEECCCTTSCCBCT-TSCEEEEEECTTSSCEEEEEETTTTEEE---ECCCSSCBCTTTCEEC
T ss_pred eecCCCCcceEEEecCCCCccceeeecCcCCC-CCCEEEEEEecCCCceEEEEECCCCcEE---EeecCCCCccccceEC
Confidence 34778887776664 32 3378899999 99988877543 36888898887654 23333333 3347899
Q ss_pred cCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCe-------------EEEeeCCCCCeEEEe-----eCC
Q psy988 77 ENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKI-------------SGIEPMPGEDKILVT-----SND 138 (408)
Q Consensus 77 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v-------------~~~~~~~~~~~l~~~-----~~d 138 (408)
|+|++|+.++.++.|.+|++.+++......... ........+ ..+.|+|+++.++.. ..+
T Consensus 90 pdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~--~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~ 167 (396)
T 3c5m_A 90 TDERAFFYVKNELNLMKVDLETLEEQVIYTVDE--EWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPT 167 (396)
T ss_dssp TTSSEEEEEETTTEEEEEETTTCCEEEEEECCT--TEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCC
T ss_pred CCCCEEEEEEcCCcEEEEECCCCCcEEEEeccc--ccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCc
Confidence 999999999999999999998876433222111 000000000 004678888877665 356
Q ss_pred CeEEEEEccCcccceeecCccccccceEEEEec-CCCEEEEeecC------ceEEEeeeccceeeeeecccCCCcccccc
Q psy988 139 SRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSH-DGKYIVSGSEN------QCIYIWKTHHDYAKFSSVRRDRNDFWEGI 211 (408)
Q Consensus 139 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 211 (408)
..|++||+.+++...... ....+..+.|+| +++.|+..+.+ ..|.+||+..+.. ..+
T Consensus 168 ~~l~~~d~~~g~~~~~~~---~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-------------~~l 231 (396)
T 3c5m_A 168 CRLIKVDIETGELEVIHQ---DTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV-------------RKI 231 (396)
T ss_dssp EEEEEEETTTCCEEEEEE---ESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC-------------EES
T ss_pred ceEEEEECCCCcEEeecc---CCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce-------------eEe
Confidence 789999998877554432 223366789999 78877766543 3577777643211 001
Q ss_pred ccc--cceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCC-----CeEEEEEcCCCee
Q psy988 212 KAH--NAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSND-----SRIRLYDLRDLNL 284 (408)
Q Consensus 212 ~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~ 284 (408)
..+ ...+..+.| +|+|++|+..+.+ +.|++||+.+++.
T Consensus 232 ~~~~~~~~~~~~~~-----------------------------------spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~ 276 (396)
T 3c5m_A 232 KEHAEGESCTHEFW-----------------------------------IPDGSAMAYVSYFKGQTDRVIYKANPETLEN 276 (396)
T ss_dssp SCCCTTEEEEEEEE-----------------------------------CTTSSCEEEEEEETTTCCEEEEEECTTTCCE
T ss_pred eccCCCccccceEE-----------------------------------CCCCCEEEEEecCCCCccceEEEEECCCCCe
Confidence 111 122344444 5555544444322 4599999988875
Q ss_pred eeEEeeccceeceeEEEEcC-CCCEEEEec----------------CCceEEEeeccccCccccccccCccccceeeeee
Q psy988 285 SCKYKGYVNVSSQIKASFSH-DGKYIVSGS----------------ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAH 347 (408)
Q Consensus 285 ~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~----------------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h 347 (408)
....... . .. +.|+| ||+++++++ .++.|++||+.++. ...+..+
T Consensus 277 ~~l~~~~-~---~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~-------------~~~l~~~ 338 (396)
T 3c5m_A 277 EEVMVMP-P---CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKS-------------AQKLCKH 338 (396)
T ss_dssp EEEEECC-S---EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTB-------------CCEEEEC
T ss_pred EEeeeCC-C---CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCc-------------eEEccCC
Confidence 4433221 1 22 78999 999888754 34789999988752 2234444
Q ss_pred cc-----------ceEEEEecCCchhhhhccCCCCCCCcccEEEEEec-CCeEEEEe--CCCCC
Q psy988 348 NA-----------VVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADF-NGVIRVFL--NKTKP 397 (408)
Q Consensus 348 ~~-----------~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~-dg~v~iw~--~~~~~ 397 (408)
.. .+..++|+| ||+.|+.++. ++...+|. +.+++
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~s~----------------dg~~l~~~s~~~~~~~l~~~~~~~~~ 386 (396)
T 3c5m_A 339 STSWDVLDGDRQITHPHPSFTP----------------NDDGVLFTSDFEGVPAIYIADVPESY 386 (396)
T ss_dssp CCCCCCBTTBSSTTCCCCEECT----------------TSSEEEEEECTTSSCEEEEEECCTTC
T ss_pred CCccccccccccCCCCCceEcc----------------CCCeEEEEecCCCCceEEEEEEcccc
Confidence 43 256788999 8887776654 56555554 44444
No 164
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.89 E-value=5.5e-21 Score=178.40 Aligned_cols=301 Identities=11% Similarity=0.060 Sum_probs=183.1
Q ss_pred CceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCcee-----eEEEEEecCCCEEEEEecC---------
Q psy988 23 DFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKL-----ITAANFCENGKFAVVGSYD--------- 88 (408)
Q Consensus 23 ~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~~~~~d--------- 88 (408)
....++.|+| ++++++++ |++|++||+.+++.. ..+.+|... ...++|||||++|+.++.+
T Consensus 17 ~~~~~~~w~~-dg~~~~~~--~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~ 91 (740)
T 4a5s_A 17 LKLYSLRWIS-DHEYLYKQ--ENNILVFNAEYGNSS--VFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYT 91 (740)
T ss_dssp CCCCCEEECS-SSEEEEEE--TTEEEEEETTTCCEE--EEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEE
T ss_pred ccccccEECC-CCcEEEEc--CCcEEEEECCCCceE--EEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccc
Confidence 4467899999 89988886 899999999999865 445555432 2447899999999998876
Q ss_pred CEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeec-Ccccc------
Q psy988 89 GRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYK-GYVNV------ 161 (408)
Q Consensus 89 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~------ 161 (408)
+.+.+||+.+++... ...+...+...+|+|||+.|+.+. ++.|++||+.+++..+... +....
T Consensus 92 ~~~~~~d~~~~~~~~---------l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~ 161 (740)
T 4a5s_A 92 ASYDIYDLNKRQLIT---------EERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGIT 161 (740)
T ss_dssp EEEEEEETTTTEECC---------SSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBC
T ss_pred eEEEEEECCCCcEEE---------cccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcc
Confidence 567799999876421 122345789999999999999885 5899999998877543221 11110
Q ss_pred ---------ccceEEEEecCCCEEEEeecCc------------------------------------eEEEeeecc---c
Q psy988 162 ---------SSQIKASFSHDGKYIVSGSENQ------------------------------------CIYIWKTHH---D 193 (408)
Q Consensus 162 ---------~~~~~~~~~~~~~~l~~~~~dg------------------------------------~i~i~d~~~---~ 193 (408)
.....+.|||||++|+.++.|. .|++||+.+ +
T Consensus 162 ~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~ 241 (740)
T 4a5s_A 162 DWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSV 241 (740)
T ss_dssp CHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSS
T ss_pred cccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCC
Confidence 1123478999999999876433 244444443 2
Q ss_pred eeeeeecccCCCcccccc------ccccceEEEEEEeCCcceeeeecCCCCCCCceee-------------------ecC
Q psy988 194 YAKFSSVRRDRNDFWEGI------KAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYV-------------------LNA 248 (408)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~ 248 (408)
... ....+ .++...+..++|+|||+.++.............+ ...
T Consensus 242 ~~~----------~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~ 311 (740)
T 4a5s_A 242 TNA----------TSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMS 311 (740)
T ss_dssp SCC----------CEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEEC
T ss_pred Ccc----------eEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeecc
Confidence 100 01111 1367789999999999966654332211111111 123
Q ss_pred CCceee-----eeccCCCCCeEE-Eec-CC--CeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEE-EecC----
Q psy988 249 TGRKIS-----GIEPMPGEDKIL-VTS-ND--SRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIV-SGSE---- 314 (408)
Q Consensus 249 ~~~~i~-----~~~~~~~~~~l~-~~~-~d--~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~---- 314 (408)
+...+. .+.|+|||+.|+ ..+ .+ ..|++||+.+++......+. ..+..+. .+|++.|+ +++.
T Consensus 312 ~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~---~~v~~~~-~~d~~~i~f~~~~~~~~ 387 (740)
T 4a5s_A 312 TTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGT---WEVIGIE-ALTSDYLYYISNEYKGM 387 (740)
T ss_dssp SSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCCSS---SCEEEEE-EECSSEEEEEESCGGGC
T ss_pred CCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecccCC---EEEEEEE-EEeCCEEEEEEecCCCC
Confidence 343333 788999999877 554 33 46888998876654433332 1333332 24466555 4443
Q ss_pred CceEEEeeccccCccccccccCccccce-eeeeeccceEEEEecCC
Q psy988 315 NQCIYIWKTHHDYAKFSSVRRDRNDFWE-GIKAHNAVVTCAVFAPC 359 (408)
Q Consensus 315 dg~i~iw~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~ 359 (408)
.+...||.+....... ...+. .+.+....+..+.|+|+
T Consensus 388 ~~~~~ly~v~~~g~~~-------~~~lt~~~~~~~~~~~~~~~S~d 426 (740)
T 4a5s_A 388 PGGRNLYKIQLIDYTK-------VTCLSCELNPERCQYYSVSFSKE 426 (740)
T ss_dssp TTCBEEEEEETTEEEE-------EEESSTTTSTTTBCBEEEEECTT
T ss_pred CceeEEEEEECCCCCc-------ceeeccccCCCCCceEEEEECCC
Confidence 2344555543321000 00111 01122356788999993
No 165
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.89 E-value=7.8e-22 Score=179.49 Aligned_cols=233 Identities=13% Similarity=0.043 Sum_probs=158.1
Q ss_pred ceeeEEEEEecCCCEEEEEec-CCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeC---CCeEE
Q psy988 67 TKLITAANFCENGKFAVVGSY-DGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSN---DSRIR 142 (408)
Q Consensus 67 ~~~v~~~~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~ 142 (408)
..+|.+++|+|||++|++++. ||++.||++++++... .. ..+...+..+.|+|+ +.+++++. +....
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~------lt--~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~ 91 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK------LN--REPINSVLDPHYGVG-RVILVRDVSKGAEQHA 91 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE------CC--SSCCSEECEECTTCS-EEEEEEECSTTSCCEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe------ee--cccccccccccCCCC-eEEEEeccCCCCcceE
Confidence 557999999999999999887 9999999986654321 11 112247889999998 66666654 45566
Q ss_pred EEEccC--cccceeecCccccccceEEEEecCCCE-EEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEE
Q psy988 143 LYDLRD--LNLSCKYKGYVNVSSQIKASFSHDGKY-IVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVT 219 (408)
Q Consensus 143 i~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 219 (408)
+|.+.. ......+..... ....+|+|+++. +++...++.+.+||+.++.... +..+.. .
T Consensus 92 l~~~~~~~~g~~~~l~~~~~---~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~-------------l~~~~~--~ 153 (582)
T 3o4h_A 92 LFKVNTSRPGEEQRLEAVKP---MRILSGVDTGEAVVFTGATEDRVALYALDGGGLRE-------------LARLPG--F 153 (582)
T ss_dssp EEEEETTSTTCCEECTTSCS---BEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEE-------------EEEESS--C
T ss_pred EEEEeccCCCccccccCCCC---ceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEE-------------eecCCC--c
Confidence 665543 222223322222 234678888864 3333444556699987643211 111111 3
Q ss_pred EEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCC----CeEEEEEcCCCeeeeEEeecccee
Q psy988 220 CAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSND----SRIRLYDLRDLNLSCKYKGYVNVS 295 (408)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----~~i~i~d~~~~~~~~~~~~~~~~~ 295 (408)
+++|+|||++|++++.+ +.|++||+.+++.. .+..+..
T Consensus 154 -----------------------------------~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~-- 195 (582)
T 3o4h_A 154 -----------------------------------GFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEG-- 195 (582)
T ss_dssp -----------------------------------EEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSC--
T ss_pred -----------------------------------eEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCC--
Confidence 34455556666665555 78999999988765 4554433
Q ss_pred ceeEEEEcCCCCEEEEecCCc--eEEEeeccccCccccccccCccccceeeeeeccceEEEE--------ecCCchhhhh
Q psy988 296 SQIKASFSHDGKYIVSGSENQ--CIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAV--------FAPCPELIIA 365 (408)
Q Consensus 296 ~v~~~~~s~~~~~l~~~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~--------~~~~~~~~~~ 365 (408)
.+..++|||||++|+++..++ .|++||+.++. .. .+.+|...+..++ |+|
T Consensus 196 ~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~------------~~-~~~~~~~~~~~~~~~~~~~~~~sp------- 255 (582)
T 3o4h_A 196 SFSSASISPGMKVTAGLETAREARLVTVDPRDGS------------VE-DLELPSKDFSSYRPTAITWLGYLP------- 255 (582)
T ss_dssp EEEEEEECTTSCEEEEEECSSCEEEEEECTTTCC------------EE-ECCCSCSHHHHHCCSEEEEEEECT-------
T ss_pred ccccceECCCCCEEEEccCCCeeEEEEEcCCCCc------------EE-EccCCCcChhhhhhccccceeEcC-------
Confidence 568899999999999888888 89999998762 22 4556666666666 999
Q ss_pred ccCCCCCCCcccEEEEEecCCeEEEEeC
Q psy988 366 QMEPDKSESTGYVLVSADFNGVIRVFLN 393 (408)
Q Consensus 366 ~~~~~~~s~~~~~l~s~~~dg~v~iw~~ 393 (408)
||.++++++.||.+++|++
T Consensus 256 ---------dg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 256 ---------DGRLAVVARREGRSAVFID 274 (582)
T ss_dssp ---------TSCEEEEEEETTEEEEEET
T ss_pred ---------CCcEEEEEEcCCcEEEEEE
Confidence 8899999999999999999
No 166
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.89 E-value=1.9e-21 Score=164.60 Aligned_cols=226 Identities=8% Similarity=0.015 Sum_probs=163.3
Q ss_pred CceEEEEeccCCeeEeEEEeCC------ceEEEEEcCCCCCEEEEEe------------CCCcEEEEecCCCCceeeeee
Q psy988 2 DKTVRLWHISRKECLCCFQHID------FVTAICFHPRDDRYFLSGS------------LDGKLRLWNIPDKKVAVWNEV 63 (408)
Q Consensus 2 Dg~i~vwd~~~~~~~~~~~h~~------~v~~~~~sp~~~~~l~t~~------------~dg~i~iw~~~~~~~~~~~~~ 63 (408)
++.|.+||+.+++.+..+.... .+.+++|+| ++++|++++ .++.|.+||+.+++.. ..+
T Consensus 55 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~--~~~ 131 (337)
T 1pby_B 55 SESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRR--KAF 131 (337)
T ss_dssp TTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEE--EEE
T ss_pred CCeEEEEECCCCCeEeeEEcCCcccccccccceEECC-CCCEEEEEecccccccccccccCceEEEEECCCCcEE--EEE
Confidence 6789999999999888776433 788999999 998888886 5799999999887655 333
Q ss_pred cCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCC-C---
Q psy988 64 EGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSND-S--- 139 (408)
Q Consensus 64 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--- 139 (408)
.. ...+.+++|+|+|++|+++ ++.|.+||+.+++......... ....+.|+|++..+++.+.. +
T Consensus 132 ~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~---------~~~~~~~s~dg~~l~~~~~~~~~~~ 199 (337)
T 1pby_B 132 EA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQS---------WEAETYAQPDVLAVWNQHESSGVMA 199 (337)
T ss_dssp EC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTT---------TTTTTBCCCBCCCCCCCCTTTTEEE
T ss_pred eC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccc---------cCCCceeCCCccEEeeeccCCCcee
Confidence 32 3457888999999988887 6889999999887543332110 01123788988877665432 2
Q ss_pred --------------------eEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeee
Q psy988 140 --------------------RIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSS 199 (408)
Q Consensus 140 --------------------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 199 (408)
.|.+||+.+++.. .+........+..++|+|++++++++ ++.|++||+.++.....
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~- 275 (337)
T 1pby_B 200 TPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKR- 275 (337)
T ss_dssp EEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEE-
T ss_pred eeeeccccccccccccccccceEEEeCCCCCce-EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcce-
Confidence 4689999988765 33222233346679999999999988 68999999865422110
Q ss_pred cccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEc
Q psy988 200 VRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDL 279 (408)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~ 279 (408)
+. ....+.+++|+|++++|++++.++.|.+||+
T Consensus 276 -----------~~------------------------------------~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~ 308 (337)
T 1pby_B 276 -----------VP------------------------------------LPHSYYSVNVSTDGSTVWLGGALGDLAAYDA 308 (337)
T ss_dssp -----------EE------------------------------------CSSCCCEEEECTTSCEEEEESBSSEEEEEET
T ss_pred -----------ec------------------------------------CCCceeeEEECCCCCEEEEEcCCCcEEEEEC
Confidence 00 1123456677778888888888999999999
Q ss_pred CCCeeeeEEeeccc
Q psy988 280 RDLNLSCKYKGYVN 293 (408)
Q Consensus 280 ~~~~~~~~~~~~~~ 293 (408)
.+++.+..+.....
T Consensus 309 ~~~~~~~~~~~~~~ 322 (337)
T 1pby_B 309 ETLEKKGQVDLPGN 322 (337)
T ss_dssp TTCCEEEEEECGGG
T ss_pred cCCcEEEEEEcCCC
Confidence 99998888776533
No 167
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.88 E-value=1.6e-18 Score=154.37 Aligned_cols=334 Identities=13% Similarity=0.125 Sum_probs=219.4
Q ss_pred CceEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecC--CCCceeeeeecCCceeeEEEEEe---
Q psy988 2 DKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIP--DKKVAVWNEVEGQTKLITAANFC--- 76 (408)
Q Consensus 2 Dg~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~--~~~~~~~~~~~~~~~~v~~~~~~--- 76 (408)
|++|.++|..+++.+..+.....+..+.|+| +++++++++.|+.|.+||+. +.+.. ..+.... ....++|+
T Consensus 176 ~~~V~viD~~t~~v~~~i~~g~~p~~v~~Sp-DGr~lyv~~~dg~V~viD~~~~t~~~v--~~i~~G~-~P~~ia~s~~~ 251 (567)
T 1qks_A 176 AGQIALIDGSTYEIKTVLDTGYAVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEPTTV--AEIKIGS-EARSIETSKME 251 (567)
T ss_dssp TTEEEEEETTTCCEEEEEECSSCEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCCEE--EEEECCS-EEEEEEECCST
T ss_pred CCeEEEEECCCCeEEEEEeCCCCccceEECC-CCCEEEEEcCCCeEEEEECCCCCCcEe--EEEecCC-CCceeEEcccc
Confidence 6899999999999999998777788999999 99999999999999999995 55544 4554433 35789999
Q ss_pred -cCCCEEEEEecC-CEEEEEeccCCeeeEEEEEeeccc--cccC-CCCeEEEeeCCCCCeEEEe-eCCCeEEEEEccCcc
Q psy988 77 -ENGKFAVVGSYD-GRCIFYTTDQLKYHTQIHVRSTRG--KNAT-GRKISGIEPMPGEDKILVT-SNDSRIRLYDLRDLN 150 (408)
Q Consensus 77 -~~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~--~~~~-~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~ 150 (408)
|||+++++++.. +.+.++|..+.+....+....... ...| ...+..+..++++..+++. ...|.|.++|..+.+
T Consensus 252 ~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~ 331 (567)
T 1qks_A 252 GWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLN 331 (567)
T ss_dssp TCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSS
T ss_pred CCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCc
Confidence 699998877654 899999999988776655432111 0011 2267788888887766555 557999999987654
Q ss_pred cceeecCccccccceEEEEecCCCEEEEee-cCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcce
Q psy988 151 LSCKYKGYVNVSSQIKASFSHDGKYIVSGS-ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPEL 229 (408)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 229 (408)
....... ........+.|+|++++++++. .++.|.++|+.+++....... .....|...-.. .+
T Consensus 332 ~~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~v-------gg~~Phpg~g~~-~~------ 396 (567)
T 1qks_A 332 NLKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDT-------GGQTPHPGRGAN-FV------ 396 (567)
T ss_dssp EEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEEC-------SSSSBCCTTCEE-EE------
T ss_pred cceeeee-eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEec-------cCcCCCCcccee-eE------
Confidence 3222111 1112244678999999987765 577999999986543221100 000011110000 12
Q ss_pred eeeecCCCCCCCceeeecCCCceeeeeccCCCCC-eEEEec-CCCeEEEEEcCC-------CeeeeEEeeccceeceeEE
Q psy988 230 IIAQMEPDKSESTGYVLNATGRKISGIEPMPGED-KILVTS-NDSRIRLYDLRD-------LNLSCKYKGYVNVSSQIKA 300 (408)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~-~d~~i~i~d~~~-------~~~~~~~~~~~~~~~v~~~ 300 (408)
+|++. .++++. .++.|.++|..+ .+.+.++..... .-..+
T Consensus 397 -----------------------------~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~--g~~~i 445 (567)
T 1qks_A 397 -----------------------------HPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGG--GSLFI 445 (567)
T ss_dssp -----------------------------ETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS--CCCCE
T ss_pred -----------------------------CCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCC--CCEEE
Confidence 34322 234443 568999999987 567777765432 22346
Q ss_pred EEcCCCCEEEEecC-------CceEEEeecccc-----CccccccccCccccceeeeeeccceEEEEecCCchhhhhccC
Q psy988 301 SFSHDGKYIVSGSE-------NQCIYIWKTHHD-----YAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQME 368 (408)
Q Consensus 301 ~~s~~~~~l~~~~~-------dg~i~iw~~~~~-----~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~ 368 (408)
..+|++++|.+... .+.|.++|+.+. ...+..+.. ..+..+..-...+..+.|+|
T Consensus 446 ~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~---------- 512 (567)
T 1qks_A 446 KTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPI---AEWAGITEGQPRVVQGEFNK---------- 512 (567)
T ss_dssp ECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECH---HHHHTCCSSCCEEEEEEECT----------
T ss_pred EeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEecc---ccccccCCCCcceEeeeECC----------
Confidence 88999999998653 359999999875 110000000 00001111235688999999
Q ss_pred CCCCCCcccEEEEEe-----cCCeEEEEeCCCCCCcccccc
Q psy988 369 PDKSESTGYVLVSAD-----FNGVIRVFLNKTKPKHSSLPV 404 (408)
Q Consensus 369 ~~~~s~~~~~l~s~~-----~dg~v~iw~~~~~~~~~~~~~ 404 (408)
+|+.+..+. .++.|.|+|.++++....++.
T Consensus 513 ------~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~ 547 (567)
T 1qks_A 513 ------DGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKD 547 (567)
T ss_dssp ------TSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred ------CCCEEEEEeecCCCCCCcEEEEECCCceEEEEeCC
Confidence 777665543 379999999999988777663
No 168
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.88 E-value=1.9e-19 Score=152.95 Aligned_cols=287 Identities=9% Similarity=0.032 Sum_probs=192.6
Q ss_pred CCCEEEEEe------CCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEec----------CCEEEEEecc
Q psy988 34 DDRYFLSGS------LDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSY----------DGRCIFYTTD 97 (408)
Q Consensus 34 ~~~~l~t~~------~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~iw~~~ 97 (408)
+++++++.. .|+.|.+||..+++.. ..+..+..+ .++|+|+|+++++++. ++.|.+||..
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~--~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~ 89 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFL--GMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDAD 89 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEE--EEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETT
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEE--EEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECc
Confidence 556666653 3789999999988865 466666555 8999999999999873 6789999999
Q ss_pred CCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeC--CCeEEEEEccCccccee-ecCccccccceEEEEecCC-
Q psy988 98 QLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSN--DSRIRLYDLRDLNLSCK-YKGYVNVSSQIKASFSHDG- 173 (408)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~- 173 (408)
+.+....+.... ....+......++++|++++|+++.. ++.|.+||+.+++.+.. +.... ...+.+.|++
T Consensus 90 t~~~~~~i~~~~--~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~----~~~v~~~p~~~ 163 (361)
T 2oiz_A 90 KLTFEKEISLPP--KRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG----CWSVIPQPNRP 163 (361)
T ss_dssp TCCEEEEEEECT--TBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT----EEEEEECTTSS
T ss_pred CCcEEEEEEcCc--cccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC----cceeEEcCCCC
Confidence 887766654421 11112345678999999999999864 58999999999887665 43211 1124566765
Q ss_pred CEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCcee
Q psy988 174 KYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKI 253 (408)
Q Consensus 174 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 253 (408)
..+++.+.||.+.+|+........... +. ...|.+. . ..
T Consensus 164 ~~~~~~~~dg~~~~v~~~~~g~~~~~~-------------~~----~~~~~~~-----------------------~-~~ 202 (361)
T 2oiz_A 164 RSFMTICGDGGLLTINLGEDGKVASQS-------------RS----KQMFSVK-----------------------D-DP 202 (361)
T ss_dssp SEEEEEETTSSEEEEEECTTSSEEEEE-------------EC----CCCSCTT-----------------------T-SC
T ss_pred eeEEEECCCCcEEEEEECCCCcEeeec-------------cc----cceEcCC-----------------------C-Cc
Confidence 667888889999999875421110000 00 0001110 0 11
Q ss_pred eeeccCCCCCeEEEecCCCeEEEEEcCCCeee--eEEeecc--------ceeceeEEEEcCCCCEEEEecC---------
Q psy988 254 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLS--CKYKGYV--------NVSSQIKASFSHDGKYIVSGSE--------- 314 (408)
Q Consensus 254 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~~~--------~~~~v~~~~~s~~~~~l~~~~~--------- 314 (408)
..+.+++++..++..+.++.+.++|+...... ..+.... .......++|+|+++.++++..
T Consensus 203 ~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~ 282 (361)
T 2oiz_A 203 IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHK 282 (361)
T ss_dssp BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTT
T ss_pred eEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCccccc
Confidence 12334556666777778899999998755422 2221100 0111113689999888877543
Q ss_pred --CceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEe
Q psy988 315 --NQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFL 392 (408)
Q Consensus 315 --dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~ 392 (408)
.+.|.+||+.+. +.+..+..+. +.+++|+| ||++|++++. +.|.+||
T Consensus 283 ~~~~~v~viD~~t~------------~~v~~i~~~~--p~~ia~sp----------------dg~~l~v~n~-~~v~v~D 331 (361)
T 2oiz_A 283 FPAAEIWVMDTKTK------------QRVARIPGRD--ALSMTIDQ----------------QRNLMLTLDG-GNVNVYD 331 (361)
T ss_dssp CCCSEEEEEETTTT------------EEEEEEECTT--CCEEEEET----------------TTTEEEEECS-SCEEEEE
T ss_pred CCCceEEEEECCCC------------cEEEEEecCC--eeEEEECC----------------CCCEEEEeCC-CeEEEEE
Confidence 358999999886 5677777666 89999999 8999998886 9999999
Q ss_pred CCCC--CCcccc
Q psy988 393 NKTK--PKHSSL 402 (408)
Q Consensus 393 ~~~~--~~~~~~ 402 (408)
..++ +....+
T Consensus 332 ~~t~~l~~~~~i 343 (361)
T 2oiz_A 332 ISQPEPKLLRTI 343 (361)
T ss_dssp CSSSSCEEEEEE
T ss_pred CCCCcceeeEEe
Confidence 9999 766554
No 169
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.86 E-value=1.5e-19 Score=168.82 Aligned_cols=312 Identities=8% Similarity=0.055 Sum_probs=186.5
Q ss_pred CceEEEEeccCCeeEeEEE-eCCc-----eEEEEEcCCCCCEEEEEeCC---------CcEEEEecCCCCceeeeeecCC
Q psy988 2 DKTVRLWHISRKECLCCFQ-HIDF-----VTAICFHPRDDRYFLSGSLD---------GKLRLWNIPDKKVAVWNEVEGQ 66 (408)
Q Consensus 2 Dg~i~vwd~~~~~~~~~~~-h~~~-----v~~~~~sp~~~~~l~t~~~d---------g~i~iw~~~~~~~~~~~~~~~~ 66 (408)
||+|++||+.++++...+. |... ...+.||| ||++|+.++.+ +.+.+||+.+++.. .+..|
T Consensus 35 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp-dg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~---~l~~~ 110 (740)
T 4a5s_A 35 ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISP-DGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI---TEERI 110 (740)
T ss_dssp TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECT-TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC---CSSCC
T ss_pred CCcEEEEECCCCceEEEEechhhhhhcccccceEECC-CCCEEEEEECCeeeEEEccceEEEEEECCCCcEE---EcccC
Confidence 6899999999999888776 4432 24478999 99999998876 56779999998764 46667
Q ss_pred ceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccc--cccCC---------CCeEEEeeCCCCCeEEEe
Q psy988 67 TKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRG--KNATG---------RKISGIEPMPGEDKILVT 135 (408)
Q Consensus 67 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~--~~~~~---------~~v~~~~~~~~~~~l~~~ 135 (408)
...+...+|||||+.||.+ .++.|++|++.+++..... ...... ..++. +....+.|+|||+.|+.+
T Consensus 111 ~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt-~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~ 188 (740)
T 4a5s_A 111 PNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRIT-WTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYA 188 (740)
T ss_dssp CTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECC-SCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEE
T ss_pred CCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEc-CCCCccceecCcccccccchhcCCCcceEECCCCCEEEEE
Confidence 7789999999999999988 5789999999877642211 000000 00000 123458999999999987
Q ss_pred eCCC------------------------------------eEEEEEccC---cc--cceeecCc----cccccceEEEEe
Q psy988 136 SNDS------------------------------------RIRLYDLRD---LN--LSCKYKGY----VNVSSQIKASFS 170 (408)
Q Consensus 136 ~~dg------------------------------------~i~i~d~~~---~~--~~~~~~~~----~~~~~~~~~~~~ 170 (408)
+.|. .|++||+.+ ++ ....+... .....+..++|+
T Consensus 189 ~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ws 268 (740)
T 4a5s_A 189 QFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWA 268 (740)
T ss_dssp EEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEE
T ss_pred EEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEe
Confidence 4221 578899887 63 12223221 123446789999
Q ss_pred cCCCEEEEeec----CceEEEeeeccceeeeeecccCCCcccccc--ccccceE-----EEEEEeCCcceee-eecCCCC
Q psy988 171 HDGKYIVSGSE----NQCIYIWKTHHDYAKFSSVRRDRNDFWEGI--KAHNAVV-----TCAVFAPCPELII-AQMEPDK 238 (408)
Q Consensus 171 ~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v-----~~~~~~~~~~~~~-~~~~~~~ 238 (408)
|||+.++.... +..|++||+.++...... .....+ ..+...+ ....|+|||+.++ .......
T Consensus 269 pdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~------~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G 342 (740)
T 4a5s_A 269 TQERISLQWLRRIQNYSVMDICDYDESSGRWNC------LVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEG 342 (740)
T ss_dssp ETTEEEEEEEESSTTEEEEEEEEEETTTTEEEE------CGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTS
T ss_pred CCCeEEEEEeCCCCCEEEEEEEECCCCccccce------eEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCC
Confidence 99997665533 347999999875410000 000111 2222222 2578999999877 4332221
Q ss_pred ---------CCCceeeecCCCceeeeeccCCCCCeEEE-ecC----CC--eEEEEEcCCCeeeeEEeec--cceeceeEE
Q psy988 239 ---------SESTGYVLNATGRKISGIEPMPGEDKILV-TSN----DS--RIRLYDLRDLNLSCKYKGY--VNVSSQIKA 300 (408)
Q Consensus 239 ---------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~----d~--~i~i~d~~~~~~~~~~~~~--~~~~~v~~~ 300 (408)
.......+......+..+.. ++++.|+. +.. .+ .|...++..++....+... ........+
T Consensus 343 ~~~l~~~~~~~~~~~~lT~g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~ 421 (740)
T 4a5s_A 343 YRHICYFQIDKKDCTFITKGTWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSV 421 (740)
T ss_dssp CEEEEEEETTCSSCEESCCSSSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEE
T ss_pred ceEEEEEECCCCceEecccCCEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEE
Confidence 11111122222333444332 34555554 443 23 4444455443332223211 012356688
Q ss_pred EEcCCCCEEEEecCC---ceEEEeecccc
Q psy988 301 SFSHDGKYIVSGSEN---QCIYIWKTHHD 326 (408)
Q Consensus 301 ~~s~~~~~l~~~~~d---g~i~iw~~~~~ 326 (408)
.|||++++++..... ..+.+++..++
T Consensus 422 ~~S~dg~~~~~~~s~~~~p~~~l~~~~~~ 450 (740)
T 4a5s_A 422 SFSKEAKYYQLRCSGPGLPLYTLHSSVND 450 (740)
T ss_dssp EECTTSSEEEEEECSBSSCEEEEEETTTT
T ss_pred EECCCCCEEEEEeCCCCCCEEEEEECCCC
Confidence 999999987654322 46777777654
No 170
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.86 E-value=3.2e-19 Score=164.97 Aligned_cols=295 Identities=10% Similarity=-0.010 Sum_probs=182.7
Q ss_pred eCCceEEEEEcCCCCCEEEEE--eCCCcEEEEecCCCCceeeeeecCCceeeE---------EEEEe--cCCCE-EEEEe
Q psy988 21 HIDFVTAICFHPRDDRYFLSG--SLDGKLRLWNIPDKKVAVWNEVEGQTKLIT---------AANFC--ENGKF-AVVGS 86 (408)
Q Consensus 21 h~~~v~~~~~sp~~~~~l~t~--~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~---------~~~~~--~~~~~-l~~~~ 86 (408)
|...+..++|++ +.-++++. +.++...||....+... ..+..+...+. ...|+ |||+. |+.++
T Consensus 22 ~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~ 98 (662)
T 3azo_A 22 RSGRPACVGAVG-DEVWWVAPRPAEAGRATLVRRRADGAE--ESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTH 98 (662)
T ss_dssp TCSCCEEEEEET-TEEEEEEEETTTTTEEEEEEECTTSCE--EESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEB
T ss_pred cCCccceeEEcC-CeEEEEecCcccCCcEEEEEECCCCCc--ceeCCCCccccccccccCCccceeeeecCCCeEEEEEE
Confidence 888999999998 77666666 55788999996444332 45666665655 56666 99998 77655
Q ss_pred c-CCEEEEEecc--C-CeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCC----------CeEEEEEccC----
Q psy988 87 Y-DGRCIFYTTD--Q-LKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSND----------SRIRLYDLRD---- 148 (408)
Q Consensus 87 ~-dg~i~iw~~~--~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------g~i~i~d~~~---- 148 (408)
. +..|.++++. + ++. ..+. . .....+...+..++|+|||+.|++++.+ ..|++||+.+
T Consensus 99 ~~~~~l~~~~~~~~g~~~~-~~l~--~-~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 174 (662)
T 3azo_A 99 FGDQRLYAFEPDAPGGAVP-RPLT--P-VSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAA 174 (662)
T ss_dssp TTTCCEEEECTTSTTCCCC-EECS--C-CCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTT
T ss_pred CCCCeEEEEcCCCCCCCCC-Eecc--C-CccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccc
Confidence 4 4567777765 2 321 1111 0 0000134568899999999999998876 5899999987
Q ss_pred --cccceeec-CccccccceEEEEecCCCEEEEeecC--------ceEEEeeec-cceeeeeecccCCCccccccccccc
Q psy988 149 --LNLSCKYK-GYVNVSSQIKASFSHDGKYIVSGSEN--------QCIYIWKTH-HDYAKFSSVRRDRNDFWEGIKAHNA 216 (408)
Q Consensus 149 --~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~d--------g~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (408)
++.. .+. .+. ..+..++|+|||++|+.++.+ ..|++||+. ++... ........+..
T Consensus 175 ~~~~~~-~l~~~~~--~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~---------~~~~l~~~~~~ 242 (662)
T 3azo_A 175 DRSAVR-ELSDDAH--RFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFA---------DTRTLLGGPEE 242 (662)
T ss_dssp CGGGSE-ESSCSCS--SEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEE---------EEEEEEEETTB
T ss_pred cCCcee-EEEecCC--CcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCccc---------ccEEeCCCCCc
Confidence 5543 333 222 235568899999999987755 379999986 33100 00000111123
Q ss_pred eEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCC--eEEEEEcCCCeeeeEEeeccce
Q psy988 217 VVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDS--RIRLYDLRDLNLSCKYKGYVNV 294 (408)
Q Consensus 217 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~ 294 (408)
.+..+.|+|||++++++..++ .|.+||+.+++.......+...
T Consensus 243 -----------------------------------~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ 287 (662)
T 3azo_A 243 -----------------------------------AIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEF 287 (662)
T ss_dssp -----------------------------------CEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBS
T ss_pred -----------------------------------eEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccc
Confidence 344455566666566777777 6777777666654333322111
Q ss_pred e------ceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEE-EecCCchhhhhcc
Q psy988 295 S------SQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCA-VFAPCPELIIAQM 367 (408)
Q Consensus 295 ~------~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~-~~~~~~~~~~~~~ 367 (408)
. .+..++|+|+++++++++. +.++||.++... ..+..+..|...+..+ ++++
T Consensus 288 ~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~-----------~~~~~l~~~~~~~~~~~s~~~--------- 346 (662)
T 3azo_A 288 AGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPES-----------GELVDAAGPWTEWAATLTVSG--------- 346 (662)
T ss_dssp SCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTT-----------TEEEECCSSCCEEEEEEEEET---------
T ss_pred cCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCC-----------CcEEEecCCCCeEEEEEecCC---------
Confidence 0 1456889999999999998 999999554211 1244556667777776 5544
Q ss_pred CCCCCCCcccEEEEEecCCe--EEEEeCCCCC
Q psy988 368 EPDKSESTGYVLVSADFNGV--IRVFLNKTKP 397 (408)
Q Consensus 368 ~~~~~s~~~~~l~s~~~dg~--v~iw~~~~~~ 397 (408)
+.-++++++.+.. |.+|++.+++
T Consensus 347 -------~~~~~~~~~~~~~~~i~~~d~~~g~ 371 (662)
T 3azo_A 347 -------TRAVGVAASPRTAYEVVELDTVTGR 371 (662)
T ss_dssp -------TEEEEEEEETTEEEEEEEEETTTCC
T ss_pred -------CEEEEEEcCCCCCCEEEEEECCCCc
Confidence 4444555565654 5555655554
No 171
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.86 E-value=4.8e-18 Score=140.12 Aligned_cols=251 Identities=9% Similarity=0.149 Sum_probs=168.9
Q ss_pred CCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeC-CCCCeEEEeeC-CCeEE
Q psy988 65 GQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPM-PGEDKILVTSN-DSRIR 142 (408)
Q Consensus 65 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~-dg~i~ 142 (408)
++-..+.+++++++++++++...++.|.+||.+. +...... .......+...+..+++. +++..+++... ++.|+
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g-~~~~~~~--~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~ 103 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEG-RFKFQFG--ECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQ 103 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTS-CEEEEEC--CBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCCC-cEEEEec--ccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEE
Confidence 4556789999999999888888899999999874 3322221 111112233468899994 56655555433 78999
Q ss_pred EEEccCcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEE
Q psy988 143 LYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAV 222 (408)
Q Consensus 143 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 222 (408)
+|| .+++....+... ....+..++++++|+.+++...++.|++||...... ..+..
T Consensus 104 ~~d-~~g~~~~~~~~~-~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~-------------~~~~~--------- 159 (286)
T 1q7f_A 104 IYN-QYGQFVRKFGAT-ILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVL-------------HKFGC--------- 159 (286)
T ss_dssp EEC-TTSCEEEEECTT-TCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEE-------------EEEEC---------
T ss_pred EEC-CCCcEEEEecCc-cCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEE-------------EEeCC---------
Confidence 999 556655555322 223467899999998777777788999998642110 00000
Q ss_pred EeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEE
Q psy988 223 FAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASF 302 (408)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~ 302 (408)
......+..++++|+++.+++...++.|++||.. ++.+..+........+..+++
T Consensus 160 ------------------------~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~ 214 (286)
T 1q7f_A 160 ------------------------SKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGI 214 (286)
T ss_dssp ------------------------TTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEE
T ss_pred ------------------------CCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEE
Confidence 0111235566677777767777788999999974 555566654322245778999
Q ss_pred cCCCCEEEEecCCc-eEEEeeccccCccccccccCccccceeeeeec--cceEEEEecCCchhhhhccCCCCCCCcccEE
Q psy988 303 SHDGKYIVSGSENQ-CIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHN--AVVTCAVFAPCPELIIAQMEPDKSESTGYVL 379 (408)
Q Consensus 303 s~~~~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l 379 (408)
+|+|+++++...++ .|.+|+... +.+..+..+. ..+.+++++| +|+++
T Consensus 215 d~~G~l~v~~~~~~~~i~~~~~~g-------------~~~~~~~~~~~~~~~~~i~~~~----------------~g~l~ 265 (286)
T 1q7f_A 215 NSNGEILIADNHNNFNLTIFTQDG-------------QLISALESKVKHAQCFDVALMD----------------DGSVV 265 (286)
T ss_dssp CTTCCEEEEECSSSCEEEEECTTS-------------CEEEEEEESSCCSCEEEEEEET----------------TTEEE
T ss_pred CCCCCEEEEeCCCCEEEEEECCCC-------------CEEEEEcccCCCCcceeEEECC----------------CCcEE
Confidence 99999988888776 999999653 2334444333 2477999999 89888
Q ss_pred EEEecCCeEEEEeCCCCC
Q psy988 380 VSADFNGVIRVFLNKTKP 397 (408)
Q Consensus 380 ~s~~~dg~v~iw~~~~~~ 397 (408)
++ +.|++|++|++....
T Consensus 266 vs-~~~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 266 LA-SKDYRLYIYRYVQLA 282 (286)
T ss_dssp EE-ETTTEEEEEECSCCC
T ss_pred EE-CCCCeEEEEEccccc
Confidence 77 579999999987644
No 172
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.85 E-value=6.1e-19 Score=152.28 Aligned_cols=272 Identities=11% Similarity=0.017 Sum_probs=168.8
Q ss_pred eEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEE--EEecCCC
Q psy988 4 TVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAA--NFCENGK 80 (408)
Q Consensus 4 ~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~ 80 (408)
.|.+||+.+++...... |...+..+.|+| +++.|+.++.++.|++||+.+++... ....+...+... .++|+++
T Consensus 61 ~l~~~d~~~g~~~~lt~~~~~~~~~~~~sp-dg~~l~~~~~~~~l~~~d~~~g~~~~--~~~~~~~~~~~~~~~~~~dg~ 137 (388)
T 3pe7_A 61 NYYLLDLNTQVATQLTEGRGDNTFGGFLSP-DDDALFYVKDGRNLMRVDLATLEENV--VYQVPAEWVGYGTWVANSDCT 137 (388)
T ss_dssp EEEEEETTTCEEEECCCSSCBCSSSCEECT-TSSEEEEEETTTEEEEEETTTCCEEE--EEECCTTEEEEEEEEECTTSS
T ss_pred eEEEEeCCCCceEEeeeCCCCCccceEEcC-CCCEEEEEeCCCeEEEEECCCCccee--eeechhhcccccceeECCCCC
Confidence 48889999999887776 545555789999 99999999999999999999988663 333344444333 3489999
Q ss_pred EEEEE----------------------ecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCC-CCCeEEEeeC
Q psy988 81 FAVVG----------------------SYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMP-GEDKILVTSN 137 (408)
Q Consensus 81 ~l~~~----------------------~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~ 137 (408)
+++.. ..+..|.+||+.+++...... +...+..+.|+| +++.|+.+..
T Consensus 138 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~---------~~~~~~~~~~sp~dg~~l~~~~~ 208 (388)
T 3pe7_A 138 KLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQ---------ENQWLGHPIYRPYDDSTVAFCHE 208 (388)
T ss_dssp EEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEE---------ESSCEEEEEEETTEEEEEEEEEC
T ss_pred eeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeec---------CCccccccEECCCCCCEEEEEEe
Confidence 88743 234689999998876433221 123688999999 9999888765
Q ss_pred C------CeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeec-Cc----eEEEeeeccceeeeeecccCCCc
Q psy988 138 D------SRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSE-NQ----CIYIWKTHHDYAKFSSVRRDRND 206 (408)
Q Consensus 138 d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg----~i~i~d~~~~~~~~~~~~~~~~~ 206 (408)
+ ..|.++|+..++.. .+..+.....+....|+|||+.|+..+. ++ .|++||+.++.....
T Consensus 209 ~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l-------- 279 (388)
T 3pe7_A 209 GPHDLVDARMWLINEDGTNMR-KVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQL-------- 279 (388)
T ss_dssp SCTTTSSCSEEEEETTSCCCE-ESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEE--------
T ss_pred cCCCCCcceEEEEeCCCCceE-EeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEE--------
Confidence 3 37888887765443 3333222123557889999998866543 22 499999976542211
Q ss_pred cccccccccce---EEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCe
Q psy988 207 FWEGIKAHNAV---VTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLN 283 (408)
Q Consensus 207 ~~~~~~~~~~~---v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 283 (408)
..+..+... .....|+|+|+.+++.... + .-.....+..|++||+.+++
T Consensus 280 --~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~-------------------------~-~~~~~~~~~~i~~~d~~~~~ 331 (388)
T 3pe7_A 280 --TSMPACSHLMSNYDGSLMVGDGSDAPVDVQD-------------------------D-SGYKIENDPFLYVFNMKNGT 331 (388)
T ss_dssp --EEECCEEEEEECTTSSEEEEEECCC--------------------------------------CCCCEEEEEETTTTE
T ss_pred --EcCCCceeeeecCCCCeEccCCCcceeEeee-------------------------c-cccccCCCCEEEEEeccCCc
Confidence 001110000 0001344544444211000 0 00011456789999999877
Q ss_pred eeeEEeeccc-ee--------ceeEEEEcCCCCEEEEec-CCceEEEeeccc
Q psy988 284 LSCKYKGYVN-VS--------SQIKASFSHDGKYIVSGS-ENQCIYIWKTHH 325 (408)
Q Consensus 284 ~~~~~~~~~~-~~--------~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~ 325 (408)
... +..+.. .. .+..++|+|||+.|+..+ .+|...||.++-
T Consensus 332 ~~~-l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l 382 (388)
T 3pe7_A 332 QHR-VARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATL 382 (388)
T ss_dssp EEE-EEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEEC
T ss_pred eEE-eccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEEC
Confidence 643 333322 00 356789999999888655 467767776543
No 173
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.85 E-value=4.1e-18 Score=140.55 Aligned_cols=245 Identities=10% Similarity=0.195 Sum_probs=168.9
Q ss_pred eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeec------CCceeeEEEEEe-cCCCEEEEEec-CCEEE
Q psy988 21 HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVE------GQTKLITAANFC-ENGKFAVVGSY-DGRCI 92 (408)
Q Consensus 21 h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~------~~~~~v~~~~~~-~~~~~l~~~~~-dg~i~ 92 (408)
+-..+.+++++| +++++++...++.|.+||.+. +.. ..+. ++...+..+++. +++.++++... ++.|.
T Consensus 28 ~~~~p~~v~~~~-~g~l~v~~~~~~~i~~~d~~g-~~~--~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~ 103 (286)
T 1q7f_A 28 QFTEPSGVAVNA-QNDIIVADTNNHRIQIFDKEG-RFK--FQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQ 103 (286)
T ss_dssp CBSCEEEEEECT-TCCEEEEEGGGTEEEEECTTS-CEE--EEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEE
T ss_pred ccCCCceEEECC-CCCEEEEECCCCEEEEECCCC-cEE--EEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEE
Confidence 346789999999 889888888899999999874 333 2222 344578899994 67776666543 88999
Q ss_pred EEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecC
Q psy988 93 FYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHD 172 (408)
Q Consensus 93 iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (408)
+|+. +++...... ......+.+++++|+++.+++...++.|.+||.. ++....+........+..++++++
T Consensus 104 ~~d~-~g~~~~~~~-------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~ 174 (286)
T 1q7f_A 104 IYNQ-YGQFVRKFG-------ATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDK 174 (286)
T ss_dssp EECT-TSCEEEEEC-------TTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSS
T ss_pred EECC-CCcEEEEec-------CccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCC
Confidence 9994 444332221 1122468899999999877776778899999964 454444432222234678999999
Q ss_pred CCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCce
Q psy988 173 GKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRK 252 (408)
Q Consensus 173 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (408)
|+.+++...++.|++||..... +..+... .....
T Consensus 175 g~l~v~~~~~~~i~~~~~~g~~-------------~~~~~~~---------------------------------g~~~~ 208 (286)
T 1q7f_A 175 QEIFISDNRAHCVKVFNYEGQY-------------LRQIGGE---------------------------------GITNY 208 (286)
T ss_dssp SEEEEEEGGGTEEEEEETTCCE-------------EEEESCT---------------------------------TTSCS
T ss_pred CCEEEEECCCCEEEEEcCCCCE-------------EEEEccC---------------------------------CccCC
Confidence 9877777778999999864211 0000000 01134
Q ss_pred eeeeccCCCCCeEEEecCCC-eEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeecccc
Q psy988 253 ISGIEPMPGEDKILVTSNDS-RIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHD 326 (408)
Q Consensus 253 i~~~~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 326 (408)
+..++++++|+++++...++ .|.+||. +++.+..+..+.....+..++++|+|+++++ +.++.|++|++...
T Consensus 209 p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 209 PIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred CcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 56677777887777777775 9999995 5667777766544335678999999987777 56999999998653
No 174
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.85 E-value=1.5e-18 Score=145.87 Aligned_cols=259 Identities=8% Similarity=0.023 Sum_probs=176.3
Q ss_pred ceeeEEEEEecCCCEEEEEecC------------------------CEEEEEeccCCeeeEEEEEeeccccccCCCCeEE
Q psy988 67 TKLITAANFCENGKFAVVGSYD------------------------GRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISG 122 (408)
Q Consensus 67 ~~~v~~~~~~~~~~~l~~~~~d------------------------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 122 (408)
-+.+.+++++|+|+++++...+ +.|.+||..+++...... ..+-.....
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~-------~~~~~~p~g 95 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSG-------KNLFYLPHG 95 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEEC-------TTTCSSEEE
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccC-------CCccCCceE
Confidence 4568999999999988888777 479999998776543211 122346889
Q ss_pred EeeCCCCCeEEEeeCCCeEEEEEccCcc-cceeecC-------ccccccceEEEEec-CCCEEEEee-cCceEEEeeecc
Q psy988 123 IEPMPGEDKILVTSNDSRIRLYDLRDLN-LSCKYKG-------YVNVSSQIKASFSH-DGKYIVSGS-ENQCIYIWKTHH 192 (408)
Q Consensus 123 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~-------~~~~~~~~~~~~~~-~~~~l~~~~-~dg~i~i~d~~~ 192 (408)
++++|+++.+++...++.|++||..... .+..+.. ......+..++++| +++.+++.+ .++.|++||...
T Consensus 96 ia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g 175 (329)
T 3fvz_A 96 LSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSG 175 (329)
T ss_dssp EEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTS
T ss_pred EEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCC
Confidence 9999999977777788999999986442 3443321 11223467899999 787777775 688999998432
Q ss_pred ceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCC-CCeEEEecCC
Q psy988 193 DYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPG-EDKILVTSND 271 (408)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d 271 (408)
.... .+.. ...+. ......-..+..++++|+ +..+++...+
T Consensus 176 -~~~~------------~~~~----------~g~~~---------------~~~~~~~~~p~gia~d~~~g~l~v~d~~~ 217 (329)
T 3fvz_A 176 -KFVT------------QWGE----------ESSGS---------------SPRPGQFSVPHSLALVPHLDQLCVADREN 217 (329)
T ss_dssp -CEEE------------EECE----------ECCSS---------------SCCTTEESCEEEEEEETTTTEEEEEETTT
T ss_pred -CEEE------------Eecc----------CCCCC---------------CCCCcccCCCcEEEEECCCCEEEEEECCC
Confidence 1110 0000 00000 000011123567777777 5666777888
Q ss_pred CeEEEEEcCCCeeeeEEeeccceeceeEEEEcC------CCCEEEEecCCceEEEeeccccCccccccccCccccceee-
Q psy988 272 SRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSH------DGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGI- 344 (408)
Q Consensus 272 ~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~------~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~- 344 (408)
+.|++||..+++.+..+........+..++|+| +|+..++...+..|++|+..++ +.+..+
T Consensus 218 ~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g------------~~~~~~~ 285 (329)
T 3fvz_A 218 GRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSG------------EIIDVFK 285 (329)
T ss_dssp TEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTC------------CEEEEEC
T ss_pred CEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCC------------eEEEEEc
Confidence 999999999899888886544444677889999 4443333445568999998876 344444
Q ss_pred --eeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCCC
Q psy988 345 --KAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKPK 398 (408)
Q Consensus 345 --~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 398 (408)
.++.....+++++| +|.++++...++.|++|++.....
T Consensus 286 ~~~~~~~~p~~ia~~~----------------dG~lyvad~~~~~I~~~~~~~~~~ 325 (329)
T 3fvz_A 286 PVRKHFDMPHDIVASE----------------DGTVYIGDAHTNTVWKFTLTEKME 325 (329)
T ss_dssp CSSSCCSSEEEEEECT----------------TSEEEEEESSSCCEEEEEEEECSS
T ss_pred CCCCccCCeeEEEECC----------------CCCEEEEECCCCEEEEEeCCcccc
Confidence 35667789999999 898999999999999999876443
No 175
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.85 E-value=3.5e-18 Score=143.60 Aligned_cols=262 Identities=9% Similarity=0.056 Sum_probs=179.0
Q ss_pred CCceEEEEEcCCCCCEEEEEeCC------------------------CcEEEEecCCCCceeeeee-cCCceeeEEEEEe
Q psy988 22 IDFVTAICFHPRDDRYFLSGSLD------------------------GKLRLWNIPDKKVAVWNEV-EGQTKLITAANFC 76 (408)
Q Consensus 22 ~~~v~~~~~sp~~~~~l~t~~~d------------------------g~i~iw~~~~~~~~~~~~~-~~~~~~v~~~~~~ 76 (408)
-+.+.+++++| +|+++++...+ +.|.+||..+++.. ... .++-..+..++++
T Consensus 23 l~~v~~va~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~--~~~~~~~~~~p~gia~d 99 (329)
T 3fvz_A 23 PGQVSGVALDS-KNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEIL--QSSGKNLFYLPHGLSID 99 (329)
T ss_dssp CSCEEEEEECT-TCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEE--EEECTTTCSSEEEEEEC
T ss_pred cCCceEEEECC-CCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEE--eccCCCccCCceEEEEC
Confidence 36799999999 89988888777 47999999888765 233 2445578999999
Q ss_pred cCCCEEEEEecCCEEEEEeccCCe-eeEEEEEeeccc-cccCCCCeEEEeeCC-CCCeEEEee-CCCeEEEEEccCcccc
Q psy988 77 ENGKFAVVGSYDGRCIFYTTDQLK-YHTQIHVRSTRG-KNATGRKISGIEPMP-GEDKILVTS-NDSRIRLYDLRDLNLS 152 (408)
Q Consensus 77 ~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~~~~-~~~~~~~v~~~~~~~-~~~~l~~~~-~dg~i~i~d~~~~~~~ 152 (408)
++|+++++...++.|++|+..... ....+......+ ...+-.....++++| ++..+++.+ .++.|++|| .+++.+
T Consensus 100 ~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~ 178 (329)
T 3fvz_A 100 TDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFV 178 (329)
T ss_dssp TTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEE
T ss_pred CCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEE
Confidence 999988888889999999986542 222211000000 012334688999999 676666665 589999999 456665
Q ss_pred eeecCcc--------ccccceEEEEecC-CCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEE
Q psy988 153 CKYKGYV--------NVSSQIKASFSHD-GKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVF 223 (408)
Q Consensus 153 ~~~~~~~--------~~~~~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 223 (408)
..+.... ....+..++++|+ +..+++...++.|++||..++...... ....+...+..+++
T Consensus 179 ~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~----------~~~~~~~~~~~~~~ 248 (329)
T 3fvz_A 179 TQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREI----------KHASFGRNVFAISY 248 (329)
T ss_dssp EEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEE----------CCTTTTTCEEEEEE
T ss_pred EEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEE----------eccccCCCcceeee
Confidence 5553211 1233678999998 666677777889999998744322110 01223445667777
Q ss_pred eCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeec-cceeceeEEEE
Q psy988 224 APCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGY-VNVSSQIKASF 302 (408)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~~v~~~~~ 302 (408)
+| +..+. .+++.+++...+..|++||..+++.+..+... .....+..+++
T Consensus 249 ~p-g~~~~----------------------------~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~ 299 (329)
T 3fvz_A 249 IP-GFLFA----------------------------VNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVA 299 (329)
T ss_dssp ET-TEEEE----------------------------EECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEE
T ss_pred cC-CEEEE----------------------------eCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEE
Confidence 77 32221 13343444566779999999999988887421 22335778999
Q ss_pred cCCCCEEEEecCCceEEEeecccc
Q psy988 303 SHDGKYIVSGSENQCIYIWKTHHD 326 (408)
Q Consensus 303 s~~~~~l~~~~~dg~i~iw~~~~~ 326 (408)
+|+|.++++...++.|++|++...
T Consensus 300 ~~dG~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 300 SEDGTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp CTTSEEEEEESSSCCEEEEEEEEC
T ss_pred CCCCCEEEEECCCCEEEEEeCCcc
Confidence 999988888888999999998753
No 176
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.84 E-value=2.3e-18 Score=145.37 Aligned_cols=261 Identities=11% Similarity=0.097 Sum_probs=170.7
Q ss_pred CceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeee
Q psy988 23 DFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYH 102 (408)
Q Consensus 23 ~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~ 102 (408)
..|.++.|+| ++..++..+.++.++.|. ++. ...+..+...+.+++|+++|++++++..++.|.+||.++++..
T Consensus 6 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~ 79 (333)
T 2dg1_A 6 QDLPTLFYSG-KSNSAVPIISESELQTIT---AEP--WLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIK 79 (333)
T ss_dssp CCCCBCCSCG-GGGCSSCCCCGGGSCEEE---CEE--EEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE
T ss_pred cccceeeecC-CccceeEEeecccCcccc---cce--eEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEE
Confidence 4578889999 777777778889999993 222 2456666677899999999998788888999999999876643
Q ss_pred EEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCC----CeEEEEEccCcccceeecCccccccceEEEEecCCCEEEE
Q psy988 103 TQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSND----SRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVS 178 (408)
Q Consensus 103 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 178 (408)
.... .+...+.+++++|+++.+++...+ +.|.+||..++.....+........+..++++|+|+.+++
T Consensus 80 ~~~~--------~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~ 151 (333)
T 2dg1_A 80 RPFV--------SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFT 151 (333)
T ss_dssp EEEE--------CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEE
T ss_pred EEee--------CCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEE
Confidence 3211 123579999999999877776655 6899999987765433332222344778999999987776
Q ss_pred eec------CceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCce
Q psy988 179 GSE------NQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRK 252 (408)
Q Consensus 179 ~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (408)
... .+.|..+|..++... .+.... ..
T Consensus 152 ~~~~~~~~~~~~l~~~~~~~~~~~-------------~~~~~~-----------------------------------~~ 183 (333)
T 2dg1_A 152 DFRGYSTNPLGGVYYVSPDFRTVT-------------PIIQNI-----------------------------------SV 183 (333)
T ss_dssp ECCCBTTBCCEEEEEECTTSCCEE-------------EEEEEE-----------------------------------SS
T ss_pred eccccccCCCceEEEEeCCCCEEE-------------EeecCC-----------------------------------Cc
Confidence 543 245555554321100 000000 12
Q ss_pred eeeeccCCCCCeEE-EecCCCeEEEEEcCC-CeeeeEEe-----eccceeceeEEEEcCCCCEEEEecCCceEEEeeccc
Q psy988 253 ISGIEPMPGEDKIL-VTSNDSRIRLYDLRD-LNLSCKYK-----GYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHH 325 (408)
Q Consensus 253 i~~~~~~~~~~~l~-~~~~d~~i~i~d~~~-~~~~~~~~-----~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 325 (408)
+..++++|+++.++ +...++.|.+||+.+ ++....+. .......+..++++++|+++++...++.|.+|+...
T Consensus 184 ~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g 263 (333)
T 2dg1_A 184 ANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRG 263 (333)
T ss_dssp EEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTS
T ss_pred ccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCCC
Confidence 34556666766444 445678999999963 33322211 111112456799999999888877789999999843
Q ss_pred cCccccccccCccccceeeeeec------cceEEEEecC
Q psy988 326 DYAKFSSVRRDRNDFWEGIKAHN------AVVTCAVFAP 358 (408)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~h~------~~v~~~~~~~ 358 (408)
+.+..+..+. ..+.+++|+|
T Consensus 264 -------------~~~~~~~~~~~~~g~~~~~~~~~~~~ 289 (333)
T 2dg1_A 264 -------------YPIGQILIPGRDEGHMLRSTHPQFIP 289 (333)
T ss_dssp -------------CEEEEEECTTGGGTCSCBCCEEEECT
T ss_pred -------------CEEEEEEcCCCccccccCcceEEECC
Confidence 2233333222 2688999999
No 177
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.84 E-value=8.8e-18 Score=156.18 Aligned_cols=281 Identities=9% Similarity=-0.016 Sum_probs=177.9
Q ss_pred CCCCCEEEEEeCC-C----cEEEEecCCCCceeee----eecCCceeeEEEEEecCCCEEEEEecCC-----EEEEEecc
Q psy988 32 PRDDRYFLSGSLD-G----KLRLWNIPDKKVAVWN----EVEGQTKLITAANFCENGKFAVVGSYDG-----RCIFYTTD 97 (408)
Q Consensus 32 p~~~~~l~t~~~d-g----~i~iw~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iw~~~ 97 (408)
| +|++++....+ + .+.+.+..+++...+. ...+|...+..++|||||++|+.+..++ .|++||+.
T Consensus 81 ~-dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~ 159 (710)
T 2xdw_A 81 K-KGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVD 159 (710)
T ss_dssp E-ETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETT
T ss_pred E-ECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECC
Confidence 7 77777655432 2 3344444444432111 1123555789999999999998776644 89999999
Q ss_pred CCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCe----------------EEEEEccCcccc--eeecCcc
Q psy988 98 QLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSR----------------IRLYDLRDLNLS--CKYKGYV 159 (408)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~----------------i~i~d~~~~~~~--~~~~~~~ 159 (408)
+++....... . ..+..++|+||++.|+.++.++. |++|++.+++.. ..+....
T Consensus 160 tg~~~~~~~~-~--------~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~ 230 (710)
T 2xdw_A 160 GAKELPDVLE-R--------VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPD 230 (710)
T ss_dssp TTEEEEEEEE-E--------ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTT
T ss_pred CCCCCccccc-C--------cccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCC
Confidence 9876543211 1 13567899999999999887665 999999887643 2223322
Q ss_pred ccccceEEEEecCCCEEEEeec-----CceEEEeeecc------ceeeeeecccCCCccccccccccceEEEEEEeCCcc
Q psy988 160 NVSSQIKASFSHDGKYIVSGSE-----NQCIYIWKTHH------DYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPE 228 (408)
Q Consensus 160 ~~~~~~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 228 (408)
.......+.|+|||++|+..+. +..|++||+.+ +.. ....+..+...+.. .|+|+|.
T Consensus 231 ~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~-----------~~~~l~~~~~~~~~-~~s~dg~ 298 (710)
T 2xdw_A 231 EPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL-----------KWVKLIDNFEGEYD-YVTNEGT 298 (710)
T ss_dssp CTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC-----------CCEEEECSSSSCEE-EEEEETT
T ss_pred CCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCcc-----------ceEEeeCCCCcEEE-EEeccCC
Confidence 2333567899999999988765 56899999864 210 01112222222222 2444444
Q ss_pred eeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecC----CCeEEEEEcCCCee--eeEEeeccceeceeEEEE
Q psy988 229 LIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSN----DSRIRLYDLRDLNL--SCKYKGYVNVSSQIKASF 302 (408)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~--~~~~~~~~~~~~v~~~~~ 302 (408)
. |+..+. .+.|.+||+.+++. ...+..+.....+..++|
T Consensus 299 ~-----------------------------------l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~ 343 (710)
T 2xdw_A 299 V-----------------------------------FTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVAC 343 (710)
T ss_dssp E-----------------------------------EEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEE
T ss_pred E-----------------------------------EEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEE
Confidence 4 443332 35799999987642 234444433235667889
Q ss_pred cCCCCEEEEecCCce--EEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEE
Q psy988 303 SHDGKYIVSGSENQC--IYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLV 380 (408)
Q Consensus 303 s~~~~~l~~~~~dg~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 380 (408)
++++.++++...++. |++|++.++ +.+..+..+.+.+..+.++| ++..|+
T Consensus 344 ~~~~~lv~~~~~~g~~~l~~~~~~~g------------~~~~~l~~~~~~v~~~~~s~----------------d~~~l~ 395 (710)
T 2xdw_A 344 VRSNFLVLCYLHDVKNTLQLHDLATG------------ALLKIFPLEVGSVVGYSGQK----------------KDTEIF 395 (710)
T ss_dssp ETTTEEEEEEEETTEEEEEEEETTTC------------CEEEEECCCSSEEEEEECCT----------------TCSEEE
T ss_pred EcCCEEEEEEEECCEEEEEEEECCCC------------CEEEecCCCCceEEEEecCC----------------CCCEEE
Confidence 888888888888885 555665444 33445566677889999999 665554
Q ss_pred -EEe---cCCeEEEEeCCCCC
Q psy988 381 -SAD---FNGVIRVFLNKTKP 397 (408)
Q Consensus 381 -s~~---~dg~v~iw~~~~~~ 397 (408)
+.+ ..+.|+.||+.+++
T Consensus 396 ~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 396 YQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEECSSCCCEEEEEETTSSS
T ss_pred EEEeCCCCCCEEEEEECCCCc
Confidence 322 35889999998876
No 178
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.83 E-value=1.1e-18 Score=161.38 Aligned_cols=267 Identities=10% Similarity=0.017 Sum_probs=164.4
Q ss_pred CceEEEEecc-CCeeEeEEEeCCceE---------EEEEc--CCCCCE-EEEEeC-CCcEEEEecC--C-CCceeeeeec
Q psy988 2 DKTVRLWHIS-RKECLCCFQHIDFVT---------AICFH--PRDDRY-FLSGSL-DGKLRLWNIP--D-KKVAVWNEVE 64 (408)
Q Consensus 2 Dg~i~vwd~~-~~~~~~~~~h~~~v~---------~~~~s--p~~~~~-l~t~~~-dg~i~iw~~~--~-~~~~~~~~~~ 64 (408)
|+...||... .++......|...+. ...|+ | |+++ |+.++. +..|.++++. + +... .+.
T Consensus 46 ~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SP-Dg~~~la~~~~~~~~l~~~~~~~~g~~~~~---~l~ 121 (662)
T 3azo_A 46 AGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRP-AGGPLLVFTHFGDQRLYAFEPDAPGGAVPR---PLT 121 (662)
T ss_dssp TTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCS-SSSCEEEEEBTTTCCEEEECTTSTTCCCCE---ECS
T ss_pred CCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeec-CCCeEEEEEECCCCeEEEEcCCCCCCCCCE---ecc
Confidence 5678899854 444444444766666 66665 9 8887 666554 5667777776 3 4433 444
Q ss_pred C-----CceeeEEEEEecCCCEEEEEecC----------CEEEEEeccC------CeeeEEEEEeeccccccCCCCeEEE
Q psy988 65 G-----QTKLITAANFCENGKFAVVGSYD----------GRCIFYTTDQ------LKYHTQIHVRSTRGKNATGRKISGI 123 (408)
Q Consensus 65 ~-----~~~~v~~~~~~~~~~~l~~~~~d----------g~i~iw~~~~------~~~~~~~~~~~~~~~~~~~~~v~~~ 123 (408)
. |...+..++|+|||+.|++++.+ ..|.+||+.+ ++.. . .. ..+...+..+
T Consensus 122 ~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~-----l~--~~~~~~~~~~ 193 (662)
T 3azo_A 122 PVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR-E-----LS--DDAHRFVTGP 193 (662)
T ss_dssp CCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE-E-----SS--CSCSSEECCC
T ss_pred CCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee-E-----EE--ecCCCcccCc
Confidence 4 67789999999999999998877 5899999987 4321 1 11 0122467788
Q ss_pred eeCCCCCeEEEeeCC--------CeEEEEEcc-Cc---ccceeecCccccccceEEEEecCCCEEEEeecCc--eEEEee
Q psy988 124 EPMPGEDKILVTSND--------SRIRLYDLR-DL---NLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQ--CIYIWK 189 (408)
Q Consensus 124 ~~~~~~~~l~~~~~d--------g~i~i~d~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg--~i~i~d 189 (408)
+|+|||++|+.++.+ ..|++||+. ++ +.......+ ...+..+.|+|||++++++..++ .|++||
T Consensus 194 ~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~--~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~ 271 (662)
T 3azo_A 194 RLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGP--EEAIAQAEWAPDGSLIVATDRTGWWNLHRVD 271 (662)
T ss_dssp EECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEET--TBCEEEEEECTTSCEEEEECTTSSCEEEEEC
T ss_pred eECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCC--CceEcceEECCCCeEEEEECCCCCeEEEEEE
Confidence 999999999988754 379999998 56 333222222 23467789999999777887788 555555
Q ss_pred eccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEec
Q psy988 190 THHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTS 269 (408)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 269 (408)
..++... .+..+...+....|++ .+..++|+|++++++++.
T Consensus 272 ~~~~~~~-------------~l~~~~~~~~~p~w~~--------------------------~~~~~~~~~~~~~~~~~~ 312 (662)
T 3azo_A 272 PATGAAT-------------QLCRREEEFAGPLWTP--------------------------GMRWFAPLANGLIAVVHG 312 (662)
T ss_dssp TTTCCEE-------------ESSCCSSBSSCCCCST--------------------------TCCSEEECTTSCEEEEEB
T ss_pred CCCCcee-------------ecccccccccCccccc--------------------------cCceEeEeCCCEEEEEEE
Confidence 5332111 0000111110111111 134567788888889988
Q ss_pred CCCeEEEE--EcCCCeeeeEEeeccceeceeEEEEcCCCCE--EEEecCCce--EEEeecccc
Q psy988 270 NDSRIRLY--DLRDLNLSCKYKGYVNVSSQIKASFSHDGKY--IVSGSENQC--IYIWKTHHD 326 (408)
Q Consensus 270 ~d~~i~i~--d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~--l~~~~~dg~--i~iw~~~~~ 326 (408)
. +.++|| |+.+++ +..+..+.. .+..+ ++++++. +++++.+.. |+++|+.++
T Consensus 313 ~-~~~~l~~~d~~~~~-~~~l~~~~~--~~~~~-~s~~~~~~~~~~~~~~~~~~i~~~d~~~g 370 (662)
T 3azo_A 313 K-GAAVLGILDPESGE-LVDAAGPWT--EWAAT-LTVSGTRAVGVAASPRTAYEVVELDTVTG 370 (662)
T ss_dssp S-SSCEEEEEETTTTE-EEECCSSCC--EEEEE-EEEETTEEEEEEEETTEEEEEEEEETTTC
T ss_pred c-CccEEEEEECCCCc-EEEecCCCC--eEEEE-EecCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 8 999999 655555 455554433 34444 1444543 444555554 444555454
No 179
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.82 E-value=6.6e-19 Score=152.50 Aligned_cols=274 Identities=11% Similarity=0.032 Sum_probs=164.0
Q ss_pred ceEEEEeccCCeeEeEEEeCCceE-EEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEE---------
Q psy988 3 KTVRLWHISRKECLCCFQHIDFVT-AICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITA--------- 72 (408)
Q Consensus 3 g~i~vwd~~~~~~~~~~~h~~~v~-~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~--------- 72 (408)
..|.+||+.+++......+...+. .+.|+| ++++|+.++.++.|++|++.+++..... ..+......
T Consensus 60 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~sp-dg~~l~~~~~~~~l~~~d~~~~~~~~~~--~~~~~~~~~g~~l~~~~~ 136 (396)
T 3c5m_A 60 RNYYLLNLETQQAVQLTEGKGDNTFGGFIST-DERAFFYVKNELNLMKVDLETLEEQVIY--TVDEEWKGYGTWVANSDC 136 (396)
T ss_dssp CEEEEEETTTTEEEECCCSSCBCTTTCEECT-TSSEEEEEETTTEEEEEETTTCCEEEEE--ECCTTEEEEEEEEECTTS
T ss_pred ceEEEEECCCCcEEEeecCCCCccccceECC-CCCEEEEEEcCCcEEEEECCCCCcEEEE--ecccccCCCCCEEEeccC
Confidence 368888999988766655544443 388999 9999999999999999999988765322 222222222
Q ss_pred ----------EEEecCCCEEEEE-----ecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCC-CCCeEEEee
Q psy988 73 ----------ANFCENGKFAVVG-----SYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMP-GEDKILVTS 136 (408)
Q Consensus 73 ----------~~~~~~~~~l~~~-----~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~ 136 (408)
+.|+|+++.++.. ..+..|.+||+.+++...... +...+..+.|+| +++.|+..+
T Consensus 137 ~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~---------~~~~~~~~~~sp~dg~~l~~~~ 207 (396)
T 3c5m_A 137 TKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQ---------DTAWLGHPIYRPFDDSTVGFCH 207 (396)
T ss_dssp SEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEE---------ESSCEEEEEEETTEEEEEEEEE
T ss_pred CccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeecc---------CCcccccceECCCCCCEEEEEe
Confidence 3467777766654 356689999998876433221 124688899999 788777765
Q ss_pred CC------CeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecC-----ceEEEeeeccceeeeeecccCCC
Q psy988 137 ND------SRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSEN-----QCIYIWKTHHDYAKFSSVRRDRN 205 (408)
Q Consensus 137 ~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~ 205 (408)
.+ ..|.+||+..++... +..+.....+..+.|+|+|++|+.++.+ +.|++||+.++.....
T Consensus 208 ~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l------- 279 (396)
T 3c5m_A 208 EGPHDLVDARMWLVNEDGSNVRK-IKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEV------- 279 (396)
T ss_dssp CSCSSSCSCCCEEEETTSCCCEE-SSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEE-------
T ss_pred cCCCCCCCceEEEEECCCCceeE-eeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEe-------
Confidence 43 468888987655333 2222212236678999999988877654 4599999875432110
Q ss_pred ccccccccccceEEEEEEeC-CcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCee
Q psy988 206 DFWEGIKAHNAVVTCAVFAP-CPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNL 284 (408)
Q Consensus 206 ~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 284 (408)
.... . .. +.|+| +++.++..... .. +. ..++. -.....+..|++||+.+++.
T Consensus 280 ---~~~~---~-~~-~~~s~~dg~~l~~~~~~-~p----------------~~-~~~~~-~~~~~~~~~i~~~d~~~~~~ 332 (396)
T 3c5m_A 280 ---MVMP---P-CS-HLMSNFDGSLMVGDGCD-AP----------------VD-VADAD-SYNIENDPFLYVLNTKAKSA 332 (396)
T ss_dssp ---EECC---S-EE-EEEECSSSSEEEEEECC-C----------------------------CCCCCCEEEEEETTTTBC
T ss_pred ---eeCC---C-CC-CCccCCCCceEEEecCC-cc----------------ee-ecccc-ccccCCCCcEEEEecccCce
Confidence 0000 0 11 55666 65544321000 00 00 00000 00002457899999988775
Q ss_pred eeEEeecccee---------ceeEEEEcCCCCEEEEecC-CceEEEeecc
Q psy988 285 SCKYKGYVNVS---------SQIKASFSHDGKYIVSGSE-NQCIYIWKTH 324 (408)
Q Consensus 285 ~~~~~~~~~~~---------~v~~~~~s~~~~~l~~~~~-dg~i~iw~~~ 324 (408)
. .+..+.... ....++|+|||+.|+..+. ++...+|.+.
T Consensus 333 ~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~ 381 (396)
T 3c5m_A 333 Q-KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIAD 381 (396)
T ss_dssp C-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred E-EccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence 4 333332210 1446789999998887654 5555555543
No 180
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.82 E-value=3.7e-17 Score=138.82 Aligned_cols=241 Identities=10% Similarity=0.050 Sum_probs=154.7
Q ss_pred CceEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEEeCC---C--cEEEEecCCCCceeeeeecCCceeeEEEEEe
Q psy988 2 DKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLD---G--KLRLWNIPDKKVAVWNEVEGQTKLITAANFC 76 (408)
Q Consensus 2 Dg~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~d---g--~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~ 76 (408)
++.|.+||+.+++.... ..+..++||| ||++|+.++.+ + .|.+|++.+++... +..+.. +..+.|+
T Consensus 42 ~~~l~~~d~~~~~~~~l----~~~~~~~~Sp-Dg~~la~~~~~~~~~~~~l~~~~~~~g~~~~---l~~~~~-~~~~~ws 112 (347)
T 2gop_A 42 ENTIVIENLKNNARRFI----ENATMPRISP-DGKKIAFMRANEEKKVSEIWVADLETLSSKK---ILEAKN-IRSLEWN 112 (347)
T ss_dssp EEEEEEEETTTCCEEEE----ESCEEEEECT-TSSEEEEEEEETTTTEEEEEEEETTTTEEEE---EEEESE-EEEEEEC
T ss_pred cceEEEEeCCCCceEEc----ccCCCeEECC-CCCEEEEEEeccCCCcceEEEEECCCCceEE---EEcCCC-ccceeEC
Confidence 46789999998876544 5688999999 99999888754 2 37888888776542 222334 8999999
Q ss_pred cCCCEEEEEecC---------------------------CEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCC
Q psy988 77 ENGKFAVVGSYD---------------------------GRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGE 129 (408)
Q Consensus 77 ~~~~~l~~~~~d---------------------------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 129 (408)
|+|+.|+.++.+ ..|.+||+.+++....+.. . .+..+.|+|++
T Consensus 113 pdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~---------~-~~~~~~~spdg 182 (347)
T 2gop_A 113 EDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK---------P-RFSSGIWHRDK 182 (347)
T ss_dssp TTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE---------E-TTCEEEEETTE
T ss_pred CCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC---------C-CcccccCCCCe
Confidence 999999888743 5789999988765222221 1 46788999999
Q ss_pred CeEEEeeCCC-------eEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecC--------ceEEEeeeccce
Q psy988 130 DKILVTSNDS-------RIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSEN--------QCIYIWKTHHDY 194 (408)
Q Consensus 130 ~~l~~~~~dg-------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~ 194 (408)
.++++..++ ...+|.+.+++. ..+..+ ..+.. ++|+|++|+.++.+ ..|++|| ++.
T Consensus 183 -~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l~~~---~~~~~--~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~ 253 (347)
T 2gop_A 183 -IVVNVPHREIIPQYFKFWDIYIWEDGKE-EKMFEK---VSFYA--VDSDGERILLYGKPEKKYMSEHNKLYIYD--GKE 253 (347)
T ss_dssp -EEEEEECCCSSCCSSCCEEEEEEETTEE-EEEEEE---ESEEE--EEECSSCEEEEECCSSSCCCSSCEEEEEC--SSC
T ss_pred -EEEEEecccccccccccccEEEeCCCce-EEeccC---cceee--ECCCCCEEEEEEccccCCccccceEEEEC--CCc
Confidence 777665432 344554444443 333322 22333 39999998877644 3577776 221
Q ss_pred eeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeE
Q psy988 195 AKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRI 274 (408)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i 274 (408)
.. .....+...+.. .+.|+ ++ .+++++.++.+
T Consensus 254 ~~------------~l~~~~~~~~~~----------------------------------~~~~s-dg-~~~~~~~~~~~ 285 (347)
T 2gop_A 254 VM------------GILDEVDRGVGQ----------------------------------AKIKD-GK-VYFTLFEEGSV 285 (347)
T ss_dssp EE------------ESSTTCCSEEEE----------------------------------EEEET-TE-EEEEEEETTEE
T ss_pred eE------------eccccCCcccCC----------------------------------ccEEc-Cc-EEEEEecCCcE
Confidence 10 111122233332 14445 45 56778889999
Q ss_pred EEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceE-EEeecc
Q psy988 275 RLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCI-YIWKTH 324 (408)
Q Consensus 275 ~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i-~iw~~~ 324 (408)
+|| +.+++...... + ...+.+++|+| .++++++.++.. .+|.+.
T Consensus 286 ~l~-~~~g~~~~~~~-~--~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 286 NLY-IWDGEIKPIAK-G--RHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEE-EESSSEEEEEC-S--SSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred EEE-EcCCceEEEec-C--CCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 999 87665543333 2 33677899999 677777666654 677665
No 181
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.82 E-value=6.4e-17 Score=135.66 Aligned_cols=262 Identities=11% Similarity=0.047 Sum_probs=174.9
Q ss_pred CceEEEEeccCCeeEeEEE-------eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEE
Q psy988 2 DKTVRLWHISRKECLCCFQ-------HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAAN 74 (408)
Q Consensus 2 Dg~i~vwd~~~~~~~~~~~-------h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~ 74 (408)
|++|.++|.++++....+. .......+.+. +++++++...++.|.+||..+++.. ..+. .......++
T Consensus 16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~--~~~lyv~~~~~~~v~viD~~t~~~~--~~i~-~~~~p~~i~ 90 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR--DGIGWIVVNNSHVIFAIDINTFKEV--GRIT-GFTSPRYIH 90 (328)
T ss_dssp CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE--TTEEEEEEGGGTEEEEEETTTCCEE--EEEE-CCSSEEEEE
T ss_pred CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE--CCEEEEEEcCCCEEEEEECcccEEE--EEcC-CCCCCcEEE
Confidence 6899999999998876541 22456788885 4666777777899999999998875 3443 235678999
Q ss_pred EecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEee--CCCeEEEEEccCcccc
Q psy988 75 FCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTS--NDSRIRLYDLRDLNLS 152 (408)
Q Consensus 75 ~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~ 152 (408)
++++++..++...++.|.+||..+.+.......... .........+++ ++..++++. .++.|.++|+++++..
T Consensus 91 ~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~---~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~ 165 (328)
T 3dsm_A 91 FLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDM---DMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVV 165 (328)
T ss_dssp EEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTC---CTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEE
T ss_pred EeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCc---cccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEE
Confidence 999985444444889999999998876554432210 011113455666 456666665 4889999999998877
Q ss_pred eeecCccccccceEEEEecCCCEEEEeecC----------ceEEEeeeccceeeeeecccCCCccccccccccceEEEEE
Q psy988 153 CKYKGYVNVSSQIKASFSHDGKYIVSGSEN----------QCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAV 222 (408)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 222 (408)
..+..... ...+.++|+|++++++..+ +.|.++|..+...... +.
T Consensus 166 ~~i~~g~~---p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~------------~~---------- 220 (328)
T 3dsm_A 166 DELTIGIQ---PTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQ------------FK---------- 220 (328)
T ss_dssp EEEECSSC---BCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEE------------EE----------
T ss_pred EEEEcCCC---ccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEE------------Ee----------
Confidence 76654322 4468899999877776554 7899999865421110 00
Q ss_pred EeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEE
Q psy988 223 FAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASF 302 (408)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~ 302 (408)
+ .....+..++++|+++.++++.. .|.+||..+++................+++
T Consensus 221 ~------------------------~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~v 274 (328)
T 3dsm_A 221 F------------------------KLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTV 274 (328)
T ss_dssp C------------------------CTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEE
T ss_pred c------------------------CCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEE
Confidence 0 01124556677777777777655 899999988776421111111235678999
Q ss_pred cC-CCCEEEEe----cCCceEEEeecc
Q psy988 303 SH-DGKYIVSG----SENQCIYIWKTH 324 (408)
Q Consensus 303 s~-~~~~l~~~----~~dg~i~iw~~~ 324 (408)
+| ++++.++. ..++.|.+||..
T Consensus 275 dp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 275 NPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp CTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred cCCCCeEEEEcccccccCCEEEEECCC
Confidence 99 55555555 578999999987
No 182
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.81 E-value=1.3e-15 Score=126.36 Aligned_cols=285 Identities=10% Similarity=0.003 Sum_probs=187.7
Q ss_pred eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCe
Q psy988 21 HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLK 100 (408)
Q Consensus 21 h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 100 (408)
+...+.++++.| +++++++...++.|.+||.. +.... .....+...+.++++.++|..+++...++.|..|+... +
T Consensus 13 ~~~~~~~i~~d~-~g~l~v~~~~~~~v~~~d~~-~~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~ 88 (299)
T 2z2n_A 13 QDTGPYGITVSD-KGKVWITQHKANMISCINLD-GKITE-YPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKG-I 88 (299)
T ss_dssp SSCCEEEEEECT-TSCEEEEETTTTEEEEECTT-CCEEE-EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTS-C
T ss_pred cCCCccceEECC-CCCEEEEecCCCcEEEEcCC-CCeEE-ecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCC-c
Confidence 446799999999 88877776667899999988 55432 22233456789999999999887777788999999763 2
Q ss_pred eeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEee
Q psy988 101 YHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS 180 (408)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 180 (408)
. ..... . .....+.++++.+++..+++...++.|..||. +++... +........+..++++++|+.+++..
T Consensus 89 ~-~~~~~---~---~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~ 159 (299)
T 2z2n_A 89 I-KEYTL---P---NPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIRE-YELPNKGSYPSFITLGSDNALWFTEN 159 (299)
T ss_dssp E-EEEEC---S---STTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSCEEEEET
T ss_pred E-EEEeC---C---CcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEE-ecCCCCCCCCceEEEcCCCCEEEEeC
Confidence 1 11111 1 12346889999998877777667789999998 554332 22111223467889999998777666
Q ss_pred cCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCC
Q psy988 181 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMP 260 (408)
Q Consensus 181 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 260 (408)
.++.|..||. ++.... +.. + .....+..+++++
T Consensus 160 ~~~~i~~~~~-~g~~~~-----------------------~~~-~----------------------~~~~~~~~i~~~~ 192 (299)
T 2z2n_A 160 QNNAIGRITE-SGDITE-----------------------FKI-P----------------------TPASGPVGITKGN 192 (299)
T ss_dssp TTTEEEEECT-TCCEEE-----------------------EEC-S----------------------STTCCEEEEEECT
T ss_pred CCCEEEEEcC-CCcEEE-----------------------eeC-C----------------------CCCCcceeEEECC
Confidence 6788999987 321110 000 0 1122345666677
Q ss_pred CCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCcccc
Q psy988 261 GEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDF 340 (408)
Q Consensus 261 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 340 (408)
++..+++...++.|.+||. +++.. .+........+..++++++|+++++...++.|..|+.. +. . .
T Consensus 193 ~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g~--~---------~ 258 (299)
T 2z2n_A 193 DDALWFVEIIGNKIGRITT-SGEIT-EFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN-NI--I---------E 258 (299)
T ss_dssp TSSEEEEETTTTEEEEECT-TCCEE-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT-TE--E---------E
T ss_pred CCCEEEEccCCceEEEECC-CCcEE-EEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC-Cc--e---------E
Confidence 7776666667889999998 66543 23222223467789999999977776678899999983 21 0 0
Q ss_pred ceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCC
Q psy988 341 WEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKP 397 (408)
Q Consensus 341 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 397 (408)
...+..+...+.++++ + +|+++++.. .+.|..++.++.+
T Consensus 259 ~~~~~~~~~~~~~i~~-~----------------~g~l~v~~~-~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 259 EYPIQIKSAEPHGICF-D----------------GETIWFAME-CDKIGKLTLIKDN 297 (299)
T ss_dssp EEECSSSSCCEEEEEE-C----------------SSCEEEEET-TTEEEEEEEC---
T ss_pred EEeCCCCCCccceEEe-c----------------CCCEEEEec-CCcEEEEEcCccc
Confidence 0111233456889999 8 888887765 5667777776543
No 183
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.81 E-value=6e-17 Score=135.83 Aligned_cols=272 Identities=12% Similarity=0.032 Sum_probs=178.9
Q ss_pred CCCcEEEEecCCCCceeeeee--c--CCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCC
Q psy988 43 LDGKLRLWNIPDKKVAVWNEV--E--GQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGR 118 (408)
Q Consensus 43 ~dg~i~iw~~~~~~~~~~~~~--~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 118 (408)
.++.|.++|.++++....... . ........+.+. +++..++...++.|.+||..+.+....+.. ..
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~---------~~ 84 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG---------FT 84 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC---------CS
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC---------CC
Confidence 378999999998876521100 0 122345667774 455556666679999999999887665521 23
Q ss_pred CeEEEeeCCCCCeEEEee-CCCeEEEEEccCcccceeecCccc---cccceEEEEecCCCEEEEee--cCceEEEeeecc
Q psy988 119 KISGIEPMPGEDKILVTS-NDSRIRLYDLRDLNLSCKYKGYVN---VSSQIKASFSHDGKYIVSGS--ENQCIYIWKTHH 192 (408)
Q Consensus 119 ~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~ 192 (408)
....+++++++ .++++. .++.|.+||+.+++....+..... ...+..+++ ++..++++. .++.|.++|+.+
T Consensus 85 ~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t 161 (328)
T 3dsm_A 85 SPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTET 161 (328)
T ss_dssp SEEEEEEEETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTT
T ss_pred CCcEEEEeCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCC
Confidence 67889998888 566655 789999999999887766553320 002334666 344555554 478999999876
Q ss_pred ceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCC-
Q psy988 193 DYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSND- 271 (408)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d- 271 (408)
+..... +. ....+..+.++|+|++++++..+
T Consensus 162 ~~~~~~------------i~------------------------------------~g~~p~~i~~~~dG~l~v~~~~~~ 193 (328)
T 3dsm_A 162 DKVVDE------------LT------------------------------------IGIQPTSLVMDKYNKMWTITDGGY 193 (328)
T ss_dssp TEEEEE------------EE------------------------------------CSSCBCCCEECTTSEEEEEBCCBC
T ss_pred CeEEEE------------EE------------------------------------cCCCccceEEcCCCCEEEEECCCc
Confidence 432211 00 01123456667777766665544
Q ss_pred ---------CeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccce
Q psy988 272 ---------SRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWE 342 (408)
Q Consensus 272 ---------~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 342 (408)
+.|.++|..+++....+..... .....++|+|++++|+++.. .|.+||..++.... ..
T Consensus 194 ~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g-~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~----------~~ 260 (328)
T 3dsm_A 194 EGSPYGYEAPSLYRIDAETFTVEKQFKFKLG-DWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPV----------RP 260 (328)
T ss_dssp TTCSSCBCCCEEEEEETTTTEEEEEEECCTT-CCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCS----------SC
T ss_pred cCCccccCCceEEEEECCCCeEEEEEecCCC-CCceeEEEecCCCEEEEEcc--EEEEEECCCCceee----------ee
Confidence 7899999999988777654222 25678999999999988765 89999998763210 01
Q ss_pred eeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEE----ecCCeEEEEeCCCCCCcccccc
Q psy988 343 GIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSA----DFNGVIRVFLNKTKPKHSSLPV 404 (408)
Q Consensus 343 ~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~----~~dg~v~iw~~~~~~~~~~~~~ 404 (408)
.+.........++++|+ +++++++. ..++.|.+|+.. ++....+++
T Consensus 261 ~~~~~~~~p~gi~vdp~---------------~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~ 310 (328)
T 3dsm_A 261 FLEFRDTKYYGLTVNPN---------------NGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYV 310 (328)
T ss_dssp SBCCCSSCEEEEEECTT---------------TCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEE
T ss_pred eecCCCCceEEEEEcCC---------------CCeEEEEcccccccCCEEEEECCC-CCEEEEEEe
Confidence 11112456789999984 55666666 578999999998 776666554
No 184
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.81 E-value=9.2e-18 Score=155.59 Aligned_cols=281 Identities=10% Similarity=-0.045 Sum_probs=173.9
Q ss_pred cCCCCCEEEEEeCCC---cEEEE--ecCCCCceeeee----ecCCceeeEEEEEecCCCEEEE-----EecCCEEEEEec
Q psy988 31 HPRDDRYFLSGSLDG---KLRLW--NIPDKKVAVWNE----VEGQTKLITAANFCENGKFAVV-----GSYDGRCIFYTT 96 (408)
Q Consensus 31 sp~~~~~l~t~~~dg---~i~iw--~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~-----~~~dg~i~iw~~ 96 (408)
+| +|++++....++ .-.|| +..+++...+.. ..+|...+..++|||||++|+. |+.+..|++||+
T Consensus 76 ~~-dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl 154 (695)
T 2bkl_A 76 SR-RNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDV 154 (695)
T ss_dssp EE-ETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEET
T ss_pred EE-ECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEEC
Confidence 36 777777766543 34444 444444332111 1246668999999999999984 444568999999
Q ss_pred cCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCe-------------EEEEEccCcccc--eeecCcccc
Q psy988 97 DQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSR-------------IRLYDLRDLNLS--CKYKGYVNV 161 (408)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-------------i~i~d~~~~~~~--~~~~~~~~~ 161 (408)
.+++... .. ... ......++|+||++.|+.++.+.. |++|++.++... ..+....+.
T Consensus 155 ~tg~~~~----~~--~~~--~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~ 226 (695)
T 2bkl_A 155 DSGEWSK----VD--VIE--GGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDP 226 (695)
T ss_dssp TTCCBCS----SC--CBS--CCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCT
T ss_pred CCCCCcC----Cc--ccC--cccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCC
Confidence 9876431 00 000 011267899999999999988765 999999887632 233333333
Q ss_pred ccceEEEEecCCCEEEEeecCc----eEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCC
Q psy988 162 SSQIKASFSHDGKYIVSGSENQ----CIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPD 237 (408)
Q Consensus 162 ~~~~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 237 (408)
..+..+.|+|||++|+..+.++ .|++++..++. ...+..+...+....+ +++. +
T Consensus 227 ~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-------------~~~l~~~~~~~~~~~~-~~g~-l------- 284 (695)
T 2bkl_A 227 TTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD-------------FRLLVKGVGAKYEVHA-WKDR-F------- 284 (695)
T ss_dssp TCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-------------CEEEEECSSCCEEEEE-ETTE-E-------
T ss_pred EEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-------------eEEeecCCCceEEEEe-cCCc-E-------
Confidence 3466889999999998877665 56666543211 1112222222233333 3333 2
Q ss_pred CCCCceeeecCCCceeeeeccCCCCCeEEEec---CCCeEEEEEcCCCee--eeEEeeccceeceeEEEEcCCCCEEEEe
Q psy988 238 KSESTGYVLNATGRKISGIEPMPGEDKILVTS---NDSRIRLYDLRDLNL--SCKYKGYVNVSSQIKASFSHDGKYIVSG 312 (408)
Q Consensus 238 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~d~~i~i~d~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 312 (408)
++... .++.|.+||+.+++. ...+..+.....+..++|+ ++.++++.
T Consensus 285 ---------------------------~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~ 336 (695)
T 2bkl_A 285 ---------------------------YVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEY 336 (695)
T ss_dssp ---------------------------EEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEE
T ss_pred ---------------------------EEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEE
Confidence 23333 368899999987653 2333333223346677887 67788888
Q ss_pred cCCceEEEeeccccCccccccccCccccceeeeee-ccceEEEEecCCchhhhhccCCCCCCCcccEEE----EEecCCe
Q psy988 313 SENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAH-NAVVTCAVFAPCPELIIAQMEPDKSESTGYVLV----SADFNGV 387 (408)
Q Consensus 313 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~----s~~~dg~ 387 (408)
..|+..+||.+.... .....+..+ .+.|..++++| +++.|+ +...+++
T Consensus 337 ~~dg~~~l~~~~~~g-----------~~~~~l~~~~~~~v~~~~~s~----------------d~~~l~~~~ss~~~P~~ 389 (695)
T 2bkl_A 337 LKDATSEVRVATLKG-----------KPVRTVQLPGVGAASNLMGLE----------------DLDDAYYVFTSFTTPRQ 389 (695)
T ss_dssp EETTEEEEEEEETTC-----------CEEEECCCSSSSEECCCBSCT----------------TCSEEEEEEEETTEEEE
T ss_pred EECCEEEEEEEeCCC-----------CeeEEecCCCCeEEEEeecCC----------------CCCEEEEEEcCCCCCCE
Confidence 999998888765210 222333333 56678888998 776665 2234688
Q ss_pred EEEEeCCCCC
Q psy988 388 IRVFLNKTKP 397 (408)
Q Consensus 388 v~iw~~~~~~ 397 (408)
|++||+.+++
T Consensus 390 v~~~d~~~g~ 399 (695)
T 2bkl_A 390 IYKTSVSTGK 399 (695)
T ss_dssp EEEEETTTCC
T ss_pred EEEEECCCCc
Confidence 9999998876
No 185
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.80 E-value=1e-16 Score=136.04 Aligned_cols=259 Identities=8% Similarity=0.072 Sum_probs=164.2
Q ss_pred CCceEEEEEcCCCCCEEEEEe---------CCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecC---C
Q psy988 22 IDFVTAICFHPRDDRYFLSGS---------LDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYD---G 89 (408)
Q Consensus 22 ~~~v~~~~~sp~~~~~l~t~~---------~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g 89 (408)
...+..+.+ +|++++... .++.|.+|++.+++.. .+ ..+..++|+|||++|+..+.+ +
T Consensus 14 ~~~~~~~~~---dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~---~l----~~~~~~~~SpDg~~la~~~~~~~~~ 83 (347)
T 2gop_A 14 FAYLSDPRT---KGELVAYVLTKANLKDNKYENTIVIENLKNNARR---FI----ENATMPRISPDGKKIAFMRANEEKK 83 (347)
T ss_dssp SCEEEEEEE---ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE---EE----ESCEEEEECTTSSEEEEEEEETTTT
T ss_pred eEEcccceE---CCcEEEEEEeecCcccCCccceEEEEeCCCCceE---Ec----ccCCCeEECCCCCEEEEEEeccCCC
Confidence 345667777 466666542 2578999999988754 33 568899999999999987754 3
Q ss_pred --EEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCC---------------------------Ce
Q psy988 90 --RCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSND---------------------------SR 140 (408)
Q Consensus 90 --~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------------------------g~ 140 (408)
.|.+|++.+++....... .. +..+.|+|+++.|+.++.+ ..
T Consensus 84 ~~~l~~~~~~~g~~~~l~~~---------~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 153 (347)
T 2gop_A 84 VSEIWVADLETLSSKKILEA---------KN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTT 153 (347)
T ss_dssp EEEEEEEETTTTEEEEEEEE---------SE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEE
T ss_pred cceEEEEECCCCceEEEEcC---------CC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccce
Confidence 477788877654332211 12 7889999999999888632 57
Q ss_pred EEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecCc-------eEEEeeeccceeeeeecccCCCcccccccc
Q psy988 141 IRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQ-------CIYIWKTHHDYAKFSSVRRDRNDFWEGIKA 213 (408)
Q Consensus 141 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 213 (408)
|++||+.+++.+..+.. . .+..+.|+|+| .++++..++ ...+|.+.++.. ..+..
T Consensus 154 l~~~d~~~~~~~~~l~~-~---~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-------------~~l~~ 215 (347)
T 2gop_A 154 FWIFDTESEEVIEEFEK-P---RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE-------------EKMFE 215 (347)
T ss_dssp EEEEETTTTEEEEEEEE-E---TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE-------------EEEEE
T ss_pred EEEEECCCCeEEeeecC-C---CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce-------------EEecc
Confidence 99999988876344443 2 46788999999 777765432 334444322110 01111
Q ss_pred ccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecC--------CCeEEEEEcCCCeee
Q psy988 214 HNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSN--------DSRIRLYDLRDLNLS 285 (408)
Q Consensus 214 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--------d~~i~i~d~~~~~~~ 285 (408)
+ ..+..+ +|+ |++|+.++. ...|.+|| +++..
T Consensus 216 ~-~~~~~~--spd-----------------------------------g~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~ 255 (347)
T 2gop_A 216 K-VSFYAV--DSD-----------------------------------GERILLYGKPEKKYMSEHNKLYIYD--GKEVM 255 (347)
T ss_dssp E-ESEEEE--EEC-----------------------------------SSCEEEEECCSSSCCCSSCEEEEEC--SSCEE
T ss_pred C-cceeeE--CCC-----------------------------------CCEEEEEEccccCCccccceEEEEC--CCceE
Confidence 1 112222 444 444444432 34688888 55543
Q ss_pred eEEeeccceeceeE-EEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhh
Q psy988 286 CKYKGYVNVSSQIK-ASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELII 364 (408)
Q Consensus 286 ~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 364 (408)
.....+ ...+.. +.|+ |+ ++++++.++.++|| +.++ +. ..+..+...|.+++|+|
T Consensus 256 ~l~~~~--~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g------------~~-~~~~~~~~~v~~~~~s~------ 311 (347)
T 2gop_A 256 GILDEV--DRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDG------------EI-KPIAKGRHWIMGFDVDE------ 311 (347)
T ss_dssp ESSTTC--CSEEEEEEEET-TE-EEEEEEETTEEEEE-EESS------------SE-EEEECSSSEEEEEEESS------
T ss_pred eccccC--CcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCC------------ce-EEEecCCCeEEeeeeeC------
Confidence 322222 224555 8899 88 88999999999999 8743 12 23344577889999975
Q ss_pred hccCCCCCCCcccEEEEEecCCeE-EEEeCC
Q psy988 365 AQMEPDKSESTGYVLVSADFNGVI-RVFLNK 394 (408)
Q Consensus 365 ~~~~~~~~s~~~~~l~s~~~dg~v-~iw~~~ 394 (408)
.++++++.++.. .+|.+.
T Consensus 312 ------------~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 312 ------------IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp ------------SEEEEEECSSSCCEEEEES
T ss_pred ------------cEEEEEcCCCChHHheEeC
Confidence 466777666654 777765
No 186
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.79 E-value=9.5e-16 Score=130.15 Aligned_cols=269 Identities=9% Similarity=-0.067 Sum_probs=173.2
Q ss_pred eEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEEe----------CCCcEEEEecCCCCceeeeeec--CC---ce
Q psy988 4 TVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGS----------LDGKLRLWNIPDKKVAVWNEVE--GQ---TK 68 (408)
Q Consensus 4 ~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~~----------~dg~i~iw~~~~~~~~~~~~~~--~~---~~ 68 (408)
+|.++|..+++.+..+.-...- .+.++| |+++|+.+. .++.|.+||..+.+......+. .. ..
T Consensus 48 ~v~v~D~~t~~~~~~i~~g~~p-~i~~sp-Dg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~ 125 (373)
T 2mad_H 48 QQWVLDAGSGSILGHVNGGFLP-NPVAAH-SGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGP 125 (373)
T ss_pred EEEEEECCCCeEEEEecCCCCC-CeEECC-CCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCC
Confidence 7899999999998877633333 999999 999888875 3678999999887665322222 00 12
Q ss_pred eeEEEEEecCCCEEEEEec--CCEEEEEeccCCeeeEE-EEEeeccccccCCCCeEEEeeCCCCC-eEEEeeCCCeEEEE
Q psy988 69 LITAANFCENGKFAVVGSY--DGRCIFYTTDQLKYHTQ-IHVRSTRGKNATGRKISGIEPMPGED-KILVTSNDSRIRLY 144 (408)
Q Consensus 69 ~v~~~~~~~~~~~l~~~~~--dg~i~iw~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~ 144 (408)
....+.|+|||++|++++. ++.|.++| .+++.... .... .++.+.|+++ .+++.+.||.+.++
T Consensus 126 ~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~------------~~~~~~~~~~~~~~~~~~dg~~~~v 192 (373)
T 2mad_H 126 YSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP------------TCYHIHPGAPSTFYLLCAQGGLAKT 192 (373)
T ss_pred CccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC------------ceEEEEeCCCceEEEEcCCCCEEEE
Confidence 3458899999999999874 47899999 88776443 2210 1234455553 45556778999999
Q ss_pred EccCcccceeecC---cccccc-ceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEE
Q psy988 145 DLRDLNLSCKYKG---YVNVSS-QIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTC 220 (408)
Q Consensus 145 d~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 220 (408)
|. +++....... ...... .....+.+++..++..+..+.+.+.|+........ ..+.........
T Consensus 193 d~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~----------~~~~~~~~~~~~ 261 (373)
T 2mad_H 193 DH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNK----------APIDALSGGRKA 261 (373)
T ss_pred EC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEe----------eeeeecCCcccc
Confidence 99 7765532210 011111 12245666666555555778899999864321110 001101111112
Q ss_pred EEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecC----------CCeEEEEEcCCCeeeeEEee
Q psy988 221 AVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSN----------DSRIRLYDLRDLNLSCKYKG 290 (408)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----------d~~i~i~d~~~~~~~~~~~~ 290 (408)
..|.|.+.. .+.++|+++.+++... ++.|.++|+.+++.+..+..
T Consensus 262 ~~~~p~g~~-------------------------~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~ 316 (373)
T 2mad_H 262 DTWRPGGWQ-------------------------QVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL 316 (373)
T ss_pred cceecCceE-------------------------eEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC
Confidence 233333322 2456777777666532 36899999999999888864
Q ss_pred ccceeceeEEEEcCCCC-EEEEec-CCceEEEeecccc
Q psy988 291 YVNVSSQIKASFSHDGK-YIVSGS-ENQCIYIWKTHHD 326 (408)
Q Consensus 291 ~~~~~~v~~~~~s~~~~-~l~~~~-~dg~i~iw~~~~~ 326 (408)
.. ....+.|+|||+ +++++. .++.|.++|..+.
T Consensus 317 g~---~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~ 351 (373)
T 2mad_H 317 GH---DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAG 351 (373)
T ss_pred CC---CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCC
Confidence 32 456899999999 777777 4899999999886
No 187
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.79 E-value=7e-16 Score=130.11 Aligned_cols=259 Identities=10% Similarity=0.014 Sum_probs=167.8
Q ss_pred CceEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCC
Q psy988 2 DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGK 80 (408)
Q Consensus 2 Dg~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 80 (408)
|+.++.| .++....+. +...+.+++|+| ++++++++..++.|.+||.++++... ....+...+.+++++++|+
T Consensus 26 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~g~l~~~~~~~~~i~~~d~~~~~~~~--~~~~~~~~~~~i~~~~dg~ 99 (333)
T 2dg1_A 26 ESELQTI---TAEPWLEISKKGLQLEGLNFDR-QGQLFLLDVFEGNIFKINPETKEIKR--PFVSHKANPAAIKIHKDGR 99 (333)
T ss_dssp GGGSCEE---ECEEEEEEESSCCCEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEE--EEECSSSSEEEEEECTTSC
T ss_pred cccCccc---ccceeEEEeccCccccCcEECC-CCCEEEEECCCCEEEEEeCCCCcEEE--EeeCCCCCcceEEECCCCc
Confidence 4566777 344444444 777889999999 89888888889999999998887653 2224567799999999999
Q ss_pred EEEEEecC----CEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeC------CCeEEEEEccCcc
Q psy988 81 FAVVGSYD----GRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSN------DSRIRLYDLRDLN 150 (408)
Q Consensus 81 ~l~~~~~d----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~ 150 (408)
++++...+ +.|.+||.++........ . ......+.+++++|+++.+++... .+.|..+|..+++
T Consensus 100 l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~--~----~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~ 173 (333)
T 2dg1_A 100 LFVCYLGDFKSTGGIFAATENGDNLQDIIE--D----LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT 173 (333)
T ss_dssp EEEEECTTSSSCCEEEEECTTSCSCEEEEC--S----SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC
T ss_pred EEEEeCCCCCCCceEEEEeCCCCEEEEEEc--c----CccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCE
Confidence 87777666 689999988765432211 0 112347899999999977666543 3556666665544
Q ss_pred cceeecCccccccceEEEEecCCCEEEEe-ecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcce
Q psy988 151 LSCKYKGYVNVSSQIKASFSHDGKYIVSG-SENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPEL 229 (408)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 229 (408)
...... ....+..++|+|++++|+.+ ..++.|++||+.+..... ..+. ..+...
T Consensus 174 ~~~~~~---~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~-----------~~~~------~~~~~~----- 228 (333)
T 2dg1_A 174 VTPIIQ---NISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTI-----------QPFG------ATIPYY----- 228 (333)
T ss_dssp EEEEEE---EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSE-----------EEEE------EEEEEE-----
T ss_pred EEEeec---CCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCc-----------cccc------ceEEEe-----
Confidence 332221 11235678999999866554 457899999985311000 0000 000000
Q ss_pred eeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccc----eeceeEEEEcCC
Q psy988 230 IIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVN----VSSQIKASFSHD 305 (408)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~----~~~v~~~~~s~~ 305 (408)
. .....+..++++++|+++++...++.|.+||. +++....+..... ...+.+++|+||
T Consensus 229 ----------------~-~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~d 290 (333)
T 2dg1_A 229 ----------------F-TGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPG 290 (333)
T ss_dssp ----------------C-CSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTT
T ss_pred ----------------c-CCCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCC
Confidence 0 00124456777778877777777889999998 4666666654321 014678999999
Q ss_pred CCEEEEecCC
Q psy988 306 GKYIVSGSEN 315 (408)
Q Consensus 306 ~~~l~~~~~d 315 (408)
++.|+.++.+
T Consensus 291 g~~L~v~~~~ 300 (333)
T 2dg1_A 291 TNQLIICSND 300 (333)
T ss_dssp SCEEEEEEEC
T ss_pred CCEEEEEeCc
Confidence 8877765554
No 188
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.79 E-value=3.5e-16 Score=129.58 Aligned_cols=242 Identities=8% Similarity=0.029 Sum_probs=162.8
Q ss_pred EeCCceEEEEEcCCCCC-EEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccC
Q psy988 20 QHIDFVTAICFHPRDDR-YFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQ 98 (408)
Q Consensus 20 ~h~~~v~~~~~sp~~~~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 98 (408)
.+.....+++|+| +++ +++++..++.|..|+..++ . ..+..+...+.+++++++|+++++...++.|.+||..+
T Consensus 25 ~~~~~~eg~~~d~-~g~~l~~~~~~~~~i~~~~~~~~-~---~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~ 99 (296)
T 3e5z_A 25 DGFTWTEGPVYVP-ARSAVIFSDVRQNRTWAWSDDGQ-L---SPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPG 99 (296)
T ss_dssp CCCSSEEEEEEEG-GGTEEEEEEGGGTEEEEEETTSC-E---EEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTT
T ss_pred cCCccccCCeEeC-CCCEEEEEeCCCCEEEEEECCCC-e---EEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCC
Confidence 3677789999999 887 7888888999999999887 3 35555677799999999999887776778999999977
Q ss_pred CeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEE----ee-------------CCCeEEEEEccCcccceeecCcccc
Q psy988 99 LKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILV----TS-------------NDSRIRLYDLRDLNLSCKYKGYVNV 161 (408)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~----~~-------------~dg~i~i~d~~~~~~~~~~~~~~~~ 161 (408)
++........ . ......+..++++|+|+.+++ ++ ..+.|..++.. ++.. .+... .
T Consensus 100 g~~~~~~~~~--~--~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~-~~~~~--~ 171 (296)
T 3e5z_A 100 GEWESIADSF--E--GKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLS-APIRD--R 171 (296)
T ss_dssp CCEEEEECEE--T--TEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEE-EEECC--C
T ss_pred CcEEEEeecc--C--CCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEE-EeecC--C
Confidence 6643222111 0 111235678999999987776 32 13456666655 4332 22222 2
Q ss_pred ccceEEEEecCCCEEEEeecCceEEEeeecc-ceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCC
Q psy988 162 SSQIKASFSHDGKYIVSGSENQCIYIWKTHH-DYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSE 240 (408)
Q Consensus 162 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 240 (408)
..+..++|+|+++.+++...++.|++|++.. +..... .. .+
T Consensus 172 ~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~--------------------~~-~~----------------- 213 (296)
T 3e5z_A 172 VKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQ--------------------GV-HF----------------- 213 (296)
T ss_dssp SSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEE--------------------EE-EE-----------------
T ss_pred CCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCC--------------------Ce-Ee-----------------
Confidence 2356799999999887777788999999852 110000 00 00
Q ss_pred CceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEE-cCCCCEEEEecCCceEE
Q psy988 241 STGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASF-SHDGKYIVSGSENQCIY 319 (408)
Q Consensus 241 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg~i~ 319 (408)
......+..++++++|+++++. ++.|.+||.. ++.+..+..+.. +.+++| +|+++.|++++.++ +.
T Consensus 214 ------~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~---~~~~~f~~~d~~~L~v~t~~~-l~ 280 (296)
T 3e5z_A 214 ------TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQT---TSNLCFGGPEGRTLYMTVSTE-FW 280 (296)
T ss_dssp ------CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSC---CCEEEEESTTSCEEEEEETTE-EE
T ss_pred ------eCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCC---ceeEEEECCCCCEEEEEcCCe-EE
Confidence 0112234567777888766655 7889999986 777777665433 678899 68999998887763 44
Q ss_pred Eeeccc
Q psy988 320 IWKTHH 325 (408)
Q Consensus 320 iw~~~~ 325 (408)
-++..+
T Consensus 281 ~~~~~~ 286 (296)
T 3e5z_A 281 SIETNV 286 (296)
T ss_dssp EEECSC
T ss_pred EEEccc
Confidence 444444
No 189
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.79 E-value=4.4e-16 Score=128.99 Aligned_cols=242 Identities=10% Similarity=0.079 Sum_probs=160.8
Q ss_pred eecCCceeeEEEEEecCCC-EEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCe
Q psy988 62 EVEGQTKLITAANFCENGK-FAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSR 140 (408)
Q Consensus 62 ~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 140 (408)
.+..+.....+++|+|+|+ +++++..++.|..|+..+. ..... .+...+.+++++|+++.+++...++.
T Consensus 22 ~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~--------~~~~~~~~l~~~~dg~l~v~~~~~~~ 91 (296)
T 3e5z_A 22 RLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEM--------HPSHHQNGHCLNKQGHLIACSHGLRR 91 (296)
T ss_dssp EEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEE--------SSCSSEEEEEECTTCCEEEEETTTTE
T ss_pred EEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEE--------CCCCCcceeeECCCCcEEEEecCCCe
Confidence 4445556678999999998 7778888999999999876 22221 12346899999999987776666789
Q ss_pred EEEEEccCcccceeecCc--cccccceEEEEecCCCEEEEeec-----------------CceEEEeeeccceeeeeecc
Q psy988 141 IRLYDLRDLNLSCKYKGY--VNVSSQIKASFSHDGKYIVSGSE-----------------NQCIYIWKTHHDYAKFSSVR 201 (408)
Q Consensus 141 i~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~-----------------dg~i~i~d~~~~~~~~~~~~ 201 (408)
|.+||..+++........ .....+..++++|+|+++++... .+.|..++..
T Consensus 92 i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~---------- 161 (296)
T 3e5z_A 92 LERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD---------- 161 (296)
T ss_dssp EEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT----------
T ss_pred EEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC----------
Confidence 999999877754332211 11123557899999988776321 1233333321
Q ss_pred cCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcC-
Q psy988 202 RDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLR- 280 (408)
Q Consensus 202 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~- 280 (408)
++. .........+..++|+|+++.+++.+.++.|.+||+.
T Consensus 162 -------------------------g~~--------------~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~ 202 (296)
T 3e5z_A 162 -------------------------GTL--------------SAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNA 202 (296)
T ss_dssp -------------------------SCE--------------EEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECS
T ss_pred -------------------------CCE--------------EEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECC
Confidence 000 0001122344667888888888777888999999997
Q ss_pred CCee---eeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEe-
Q psy988 281 DLNL---SCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVF- 356 (408)
Q Consensus 281 ~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~- 356 (408)
+++. ...+ . .....+..++++++|+++++. ++.|.+|+... +.+..+..+.. +++++|
T Consensus 203 ~g~~~~~~~~~-~-~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~g-------------~~~~~~~~~~~-~~~~~f~ 264 (296)
T 3e5z_A 203 RGETEYQGVHF-T-VEPGKTDGLRVDAGGLIWASA--GDGVHVLTPDG-------------DELGRVLTPQT-TSNLCFG 264 (296)
T ss_dssp SSCEEEEEEEE-C-CSSSCCCSEEEBTTSCEEEEE--TTEEEEECTTS-------------CEEEEEECSSC-CCEEEEE
T ss_pred CCcCcCCCeEe-e-CCCCCCCeEEECCCCCEEEEc--CCeEEEECCCC-------------CEEEEEECCCC-ceeEEEE
Confidence 5554 2333 1 123345678999999977766 78999999863 45555666666 899999
Q ss_pred cCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCC
Q psy988 357 APCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKP 397 (408)
Q Consensus 357 ~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 397 (408)
.| +++.|..++.++ +.-++.++.+
T Consensus 265 ~~----------------d~~~L~v~t~~~-l~~~~~~~~~ 288 (296)
T 3e5z_A 265 GP----------------EGRTLYMTVSTE-FWSIETNVRG 288 (296)
T ss_dssp ST----------------TSCEEEEEETTE-EEEEECSCCB
T ss_pred CC----------------CCCEEEEEcCCe-EEEEEccccc
Confidence 57 888888887664 4444554443
No 190
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.78 E-value=2.7e-16 Score=146.19 Aligned_cols=249 Identities=12% Similarity=0.086 Sum_probs=163.2
Q ss_pred CceEEEEEcCCCCCEEEEEeCCC-----cEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCE-------
Q psy988 23 DFVTAICFHPRDDRYFLSGSLDG-----KLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGR------- 90 (408)
Q Consensus 23 ~~v~~~~~sp~~~~~l~t~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~------- 90 (408)
..+..++||| ||++||.+..++ .|++||+.+++.... .+ ....+..++|+|||+.|+.++.++.
T Consensus 125 ~~~~~~~~SP-Dg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~-~~--~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~ 200 (710)
T 2xdw_A 125 VALRGYAFSE-DGEYFAYGLSASGSDWVTIKFMKVDGAKELPD-VL--ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGT 200 (710)
T ss_dssp EEEEEEEECT-TSSEEEEEEEETTCSCEEEEEEETTTTEEEEE-EE--EEECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred EEEEEEEECC-CCCEEEEEEcCCCCceEEEEEEECCCCCCCcc-cc--cCcccceEEEEeCCCEEEEEEECCcccccccc
Confidence 3588999999 999998776543 899999999876531 12 1223678999999999999988765
Q ss_pred ---------EEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeC-----CCeEEEEEccC------cc
Q psy988 91 ---------CIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSN-----DSRIRLYDLRD------LN 150 (408)
Q Consensus 91 ---------i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~------~~ 150 (408)
|++|++.+........... ..+...+..+.|+|++++|+.++. +..|++||+.+ +.
T Consensus 201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~----~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~ 276 (710)
T 2xdw_A 201 ETSTNLHQKLYYHVLGTDQSEDILCAEF----PDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGI 276 (710)
T ss_dssp CCCCCCCCEEEEEETTSCGGGCEEEECC----TTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSS
T ss_pred ccccCCCCEEEEEECCCCcccceEEecc----CCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCc
Confidence 9999998765322221111 112345788999999999988754 57899999986 43
Q ss_pred -cceeecCccccccceEEEEecCCCEEEEeecC----ceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeC
Q psy988 151 -LSCKYKGYVNVSSQIKASFSHDGKYIVSGSEN----QCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAP 225 (408)
Q Consensus 151 -~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 225 (408)
....+..+... .. ..|+++|+.|+..+.. +.|.+||+.++.. ..++.+..+..
T Consensus 277 ~~~~~l~~~~~~--~~-~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~----------~~~~~l~~~~~--------- 334 (710)
T 2xdw_A 277 LKWVKLIDNFEG--EY-DYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEE----------SKWKVLVPEHE--------- 334 (710)
T ss_dssp CCCEEEECSSSS--CE-EEEEEETTEEEEEECTTCTTCEEEEEETTSCCG----------GGCEEEECCCS---------
T ss_pred cceEEeeCCCCc--EE-EEEeccCCEEEEEECCCCCCCEEEEEeCCCCCc----------ccceeccCCCC---------
Confidence 34444443332 22 3588999888776553 3688888764310 00111111211
Q ss_pred CcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCC--eEEEEEcCCCeeeeEEeeccceeceeEEEEc
Q psy988 226 CPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDS--RIRLYDLRDLNLSCKYKGYVNVSSQIKASFS 303 (408)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s 303 (408)
...+..+.+++++.++++...++ .|.+||+.+++....+..+ ...+..+.++
T Consensus 335 ------------------------~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~--~~~v~~~~~s 388 (710)
T 2xdw_A 335 ------------------------KDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLE--VGSVVGYSGQ 388 (710)
T ss_dssp ------------------------SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCC--SSEEEEEECC
T ss_pred ------------------------CCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCC--CceEEEEecC
Confidence 01233344444445566777777 4667787677776777665 3367788999
Q ss_pred CCCCEEEEe----cCCceEEEeeccccC
Q psy988 304 HDGKYIVSG----SENQCIYIWKTHHDY 327 (408)
Q Consensus 304 ~~~~~l~~~----~~dg~i~iw~~~~~~ 327 (408)
|+++.++.. ...+.|++||+.++.
T Consensus 389 ~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 389 KKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp TTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred CCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 999876632 245789999998764
No 191
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.78 E-value=6e-16 Score=137.92 Aligned_cols=284 Identities=11% Similarity=0.035 Sum_probs=186.1
Q ss_pred CCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEecc--CCeeeEEEEEeecc
Q psy988 34 DDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTD--QLKYHTQIHVRSTR 111 (408)
Q Consensus 34 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~--~~~~~~~~~~~~~~ 111 (408)
++.++++...+++|.++|..+++.. ..+... ..+..+.|+|||+++++++.++.|.+||+. +.+....+..
T Consensus 166 ~~~~~V~~~~~~~V~viD~~t~~v~--~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~---- 238 (567)
T 1qks_A 166 ENLFSVTLRDAGQIALIDGSTYEIK--TVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI---- 238 (567)
T ss_dssp GGEEEEEETTTTEEEEEETTTCCEE--EEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC----
T ss_pred CceEEEEeCCCCeEEEEECCCCeEE--EEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec----
Confidence 4566777778899999999998876 344432 245689999999999999999999999995 6554433321
Q ss_pred ccccCCCCeEEEeeC----CCCCeEEEeeC-CCeEEEEEccCcccceeecCccc---------cccceEEEEecCCCEE-
Q psy988 112 GKNATGRKISGIEPM----PGEDKILVTSN-DSRIRLYDLRDLNLSCKYKGYVN---------VSSQIKASFSHDGKYI- 176 (408)
Q Consensus 112 ~~~~~~~~v~~~~~~----~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~l- 176 (408)
......++|+ |+|++++++.. ++.|.++|..+.+.+..+..... ...+..+..++++..+
T Consensus 239 -----G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~v 313 (567)
T 1qks_A 239 -----GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFI 313 (567)
T ss_dssp -----CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEE
T ss_pred -----CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEE
Confidence 1246789999 69999988755 69999999999888776543210 1235567778876554
Q ss_pred EEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeee
Q psy988 177 VSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGI 256 (408)
Q Consensus 177 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 256 (408)
+....+|.|.++|....... .+..+ ........+
T Consensus 314 v~~~~~g~v~~vd~~~~~~~--------------------~v~~i--------------------------~~~~~~~d~ 347 (567)
T 1qks_A 314 VNVKETGKILLVDYTDLNNL--------------------KTTEI--------------------------SAERFLHDG 347 (567)
T ss_dssp EEETTTTEEEEEETTCSSEE--------------------EEEEE--------------------------ECCSSEEEE
T ss_pred EEecCCCeEEEEecCCCccc--------------------eeeee--------------------------eccccccCc
Confidence 44456789999987542100 01110 111223455
Q ss_pred ccCCCCCeEEEe-cCCCeEEEEEcCCCeeeeEEee-ccceeceeEEE-EcCCCCEE-EEec-CCceEEEeeccccCcccc
Q psy988 257 EPMPGEDKILVT-SNDSRIRLYDLRDLNLSCKYKG-YVNVSSQIKAS-FSHDGKYI-VSGS-ENQCIYIWKTHHDYAKFS 331 (408)
Q Consensus 257 ~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~-~~~~~~v~~~~-~s~~~~~l-~~~~-~dg~i~iw~~~~~~~~~~ 331 (408)
.|+|++++++++ ..+++|.++|+.++++...+.. .....+-.... ++|++..+ +++. .++.|.+++......+
T Consensus 348 ~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~-- 425 (567)
T 1qks_A 348 GLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHP-- 425 (567)
T ss_dssp EECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCT--
T ss_pred eECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCc--
Confidence 667777776655 4678999999999998877654 22111111122 57875544 4543 4689999998763211
Q ss_pred ccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEec-------CCeEEEEeCCCC
Q psy988 332 SVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADF-------NGVIRVFLNKTK 396 (408)
Q Consensus 332 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~-------dg~v~iw~~~~~ 396 (408)
...++.++.+......-.-+..+| ++++|..... .++|.++|+.+.
T Consensus 426 ---~~~~kvv~~i~~~g~g~~~i~~~p----------------~~~~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 426 ---DNAWKILDSFPALGGGSLFIKTHP----------------NSQYLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp ---TTBTSEEEEEECSCSCCCCEECCT----------------TCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred ---cccCEEEEEEecCCCCCEEEEeCC----------------CCCeEEEecCCCCCcccCceEEEEECCcc
Confidence 112345555554433334477899 7877777552 358999999877
No 192
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.77 E-value=1.9e-15 Score=126.34 Aligned_cols=273 Identities=9% Similarity=0.020 Sum_probs=170.8
Q ss_pred CceEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEEe----------CCCcEEEEecCCCCceeeeeecC-----C
Q psy988 2 DKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGS----------LDGKLRLWNIPDKKVAVWNEVEG-----Q 66 (408)
Q Consensus 2 Dg~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~~----------~dg~i~iw~~~~~~~~~~~~~~~-----~ 66 (408)
++.|.+.|..+++.+..+.-...-. +.++| |+++++++. .++.|.+||..+.+......+.. .
T Consensus 58 ~~~V~ViD~~t~~v~~~I~vG~~P~-va~sp-DG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~ 135 (386)
T 3sjl_D 58 VTQQFVIDGEAGRVIGMIDGGFLPN-PVVAD-DGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLV 135 (386)
T ss_dssp SEEEEEEETTTTEEEEEEEECSSCE-EEECT-TSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCB
T ss_pred CCEEEEEECCCCeEEEEEECCCCCc-EEECC-CCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCcccccc
Confidence 6789999999999999998433334 99999 888887765 36789999999988763222221 0
Q ss_pred ceeeEEEEEecCCCEEEEEec--CCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEE
Q psy988 67 TKLITAANFCENGKFAVVGSY--DGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLY 144 (408)
Q Consensus 67 ~~~v~~~~~~~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~ 144 (408)
......+.|+|||++++++.. ++.|.++|+.+.+....+.... . ...+....+.+++.+.||.+.+.
T Consensus 136 g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g----------~-~~~~P~g~~~~~~~~~DG~~~~v 204 (386)
T 3sjl_D 136 GTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD----------C-YHIFPTAPDTFFMHCRDGSLAKV 204 (386)
T ss_dssp SCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----------E-EEEEEEETTEEEEEETTSCEEEE
T ss_pred CCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC----------c-ceeecCCCceeEEECCCCCEEEE
Confidence 124557899999999998874 6899999999998776664311 1 12222234566677778888888
Q ss_pred EccC-cccceeecCccc--cccc-eEEEEe-cCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEE
Q psy988 145 DLRD-LNLSCKYKGYVN--VSSQ-IKASFS-HDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVT 219 (408)
Q Consensus 145 d~~~-~~~~~~~~~~~~--~~~~-~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 219 (408)
++.+ ++.......... ...+ ....|. ++|++++ .+.+|.+++.|+..+...... .+..+.... +
T Consensus 205 ~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~-------~~~~~~~~~--~- 273 (386)
T 3sjl_D 205 AFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLP-------AVEALTEAE--R- 273 (386)
T ss_dssp ECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECC-------CEESSCHHH--H-
T ss_pred ECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeec-------ceecccccc--c-
Confidence 8865 444221111110 0111 123554 5776555 455799999998654321110 000000000 0
Q ss_pred EEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecC----------CCeEEEEEcCCCeeeeEEe
Q psy988 220 CAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSN----------DSRIRLYDLRDLNLSCKYK 289 (408)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----------d~~i~i~d~~~~~~~~~~~ 289 (408)
...|.|.+ ...++++++++.+++... .+.|.++|+.+++.+..+.
T Consensus 274 ~~g~~p~g-------------------------~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~ 328 (386)
T 3sjl_D 274 ADGWRPGG-------------------------WQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE 328 (386)
T ss_dssp HTTEEECS-------------------------SSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE
T ss_pred cccccCCC-------------------------cceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEE
Confidence 00011111 111333445555555421 3579999999999998887
Q ss_pred eccceeceeEEEEcCCCC-EEEEe-cCCceEEEeecccc
Q psy988 290 GYVNVSSQIKASFSHDGK-YIVSG-SENQCIYIWKTHHD 326 (408)
Q Consensus 290 ~~~~~~~v~~~~~s~~~~-~l~~~-~~dg~i~iw~~~~~ 326 (408)
... .+..+.+++|++ +|++. ..++.|.++|..++
T Consensus 329 vg~---~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~ 364 (386)
T 3sjl_D 329 MGH---EIDSINVSQDEKPLLYALSTGDKTLYIHDAESG 364 (386)
T ss_dssp EEE---EECEEEECSSSSCEEEEEETTTTEEEEEETTTC
T ss_pred CCC---CcceEEECCCCCeEEEEEcCCCCeEEEEECCCC
Confidence 532 566899999997 66664 45899999999887
No 193
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.76 E-value=1.7e-16 Score=147.18 Aligned_cols=262 Identities=8% Similarity=-0.034 Sum_probs=161.2
Q ss_pred EEEeccCCeeEeEEE-------eCCceEEEEEcCCCCCEEE-----EEeCCCcEEEEecCCCCceeeeeecCCceeeEEE
Q psy988 6 RLWHISRKECLCCFQ-------HIDFVTAICFHPRDDRYFL-----SGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAA 73 (408)
Q Consensus 6 ~vwd~~~~~~~~~~~-------h~~~v~~~~~sp~~~~~l~-----t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~ 73 (408)
.+.+...++....+. |...+.+++||| ||++|| .|+.+..|++||+.+++......+... ....+
T Consensus 97 ~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SP-DG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~--~~~~~ 173 (695)
T 2bkl_A 97 YWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSW-DGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGG--KYATP 173 (695)
T ss_dssp EEEESTTSCCEEEECGGGSSSSSCEEEEEEEECT-TSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCC--TTCCC
T ss_pred EEEcCCCCCcEEEEchHHhccCCCEEEEEEEECC-CCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcc--cccce
Confidence 334444555444443 444689999999 999998 344456899999999876411122211 12678
Q ss_pred EEecCCCEEEEEecCCE-------------EEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCC-
Q psy988 74 NFCENGKFAVVGSYDGR-------------CIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDS- 139 (408)
Q Consensus 74 ~~~~~~~~l~~~~~dg~-------------i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg- 139 (408)
+|+|||+.|+.++.|.. |++|++.+.......... ...+...+..+.|+|+|++|+.++.++
T Consensus 174 ~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~----~~~~~~~~~~~~~SpDG~~l~~~~~~~~ 249 (695)
T 2bkl_A 174 KWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHE----RTGDPTTFLQSDLSRDGKYLFVYILRGW 249 (695)
T ss_dssp EECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEEC----CCCCTTCEEEEEECTTSCCEEEEEEETT
T ss_pred EEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEe----cCCCCEEEEEEEECCCCCEEEEEEeCCC
Confidence 99999999999988776 999999877532221111 112334688999999999998887655
Q ss_pred ---eEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeec----CceEEEeeeccceeeeeecccCCCccccccc
Q psy988 140 ---RIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSE----NQCIYIWKTHHDYAKFSSVRRDRNDFWEGIK 212 (408)
Q Consensus 140 ---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 212 (408)
.|++|+..+++.. .+..+.. ......+ ++|+ ++..+. ++.|.+||+.++... .+..+.
T Consensus 250 ~~~~l~~~~~~~~~~~-~l~~~~~--~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~----------~~~~l~ 314 (695)
T 2bkl_A 250 SENDVYWKRPGEKDFR-LLVKGVG--AKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARA----------SWKEIV 314 (695)
T ss_dssp TEEEEEEECTTCSSCE-EEEECSS--CCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGG----------GCEEEE
T ss_pred CceEEEEEcCCCCceE-EeecCCC--ceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCcc----------CCeEEe
Confidence 6777766555433 3333222 2333444 6676 554443 578999998653110 011111
Q ss_pred cc--cceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcC-CCeeeeEEe
Q psy988 213 AH--NAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLR-DLNLSCKYK 289 (408)
Q Consensus 213 ~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~ 289 (408)
.+ ...+..+. ++ ++..+++...|+..+||.+. +++....+.
T Consensus 315 ~~~~~~~l~~~~-----------------------------------~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~ 358 (695)
T 2bkl_A 315 PEDSSASLLSVS-----------------------------------IV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQ 358 (695)
T ss_dssp CCCSSCEEEEEE-----------------------------------EE-TTEEEEEEEETTEEEEEEEETTCCEEEECC
T ss_pred cCCCCCeEEEEE-----------------------------------EE-CCEEEEEEEECCEEEEEEEeCCCCeeEEec
Confidence 11 22233333 33 34456777888888877654 355444444
Q ss_pred eccceeceeEEEEcCCCCEEE----EecCCceEEEeecccc
Q psy988 290 GYVNVSSQIKASFSHDGKYIV----SGSENQCIYIWKTHHD 326 (408)
Q Consensus 290 ~~~~~~~v~~~~~s~~~~~l~----~~~~dg~i~iw~~~~~ 326 (408)
.+ ....+..++++|+++.++ +....+.|++||+.++
T Consensus 359 ~~-~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g 398 (695)
T 2bkl_A 359 LP-GVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTG 398 (695)
T ss_dssp CS-SSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTC
T ss_pred CC-CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 32 123566788999998777 3344688999999875
No 194
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.76 E-value=4.7e-15 Score=123.99 Aligned_cols=297 Identities=9% Similarity=0.030 Sum_probs=191.8
Q ss_pred EEEcCCCCCEEEEEeC-----CCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEe----------cCCEEE
Q psy988 28 ICFHPRDDRYFLSGSL-----DGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGS----------YDGRCI 92 (408)
Q Consensus 28 ~~~sp~~~~~l~t~~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~ 92 (408)
....| +++.++.... ++.|.+.|..+++.. ..+.....+ . +.++|||+++++++ .++.|.
T Consensus 38 ~~~~p-d~~~vyV~~~~~~~~~~~V~ViD~~t~~v~--~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~Vs 112 (386)
T 3sjl_D 38 EAPAP-DARRVYVNDPAHFAAVTQQFVIDGEAGRVI--GMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVE 112 (386)
T ss_dssp CCCCC-CTTEEEEEECGGGCSSEEEEEEETTTTEEE--EEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred eccCC-CCCEEEEEcCcccCCCCEEEEEECCCCeEE--EEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEE
Confidence 45568 7887777765 679999999998876 444433333 3 99999999988876 367899
Q ss_pred EEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeC--CCeEEEEEccCcccceeecCccccccceEEEEe
Q psy988 93 FYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSN--DSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFS 170 (408)
Q Consensus 93 iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (408)
+||..+.+....+...... ..........+.++|||++++++.. ++.|.++|+.+++.+.++..... ...+.
T Consensus 113 viD~~t~~v~~~I~v~~g~-r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~-----~~~~P 186 (386)
T 3sjl_D 113 VFDPVTLLPTADIELPDAP-RFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC-----YHIFP 186 (386)
T ss_dssp EECTTTCCEEEEEEETTCC-CCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE-----EEEEE
T ss_pred EEECCCCeEEEEEECCCcc-ccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc-----ceeec
Confidence 9999998877766542200 0011224567899999999998864 68999999999998887753221 12344
Q ss_pred cCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCC
Q psy988 171 HDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATG 250 (408)
Q Consensus 171 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (408)
...+.+++.+.||.+.+.++........ .. . -.+.++...+
T Consensus 187 ~g~~~~~~~~~DG~~~~v~~~~~g~v~~-~~-~-----------------~~~~~~~~~~-------------------- 227 (386)
T 3sjl_D 187 TAPDTFFMHCRDGSLAKVAFGTEGTPEI-TH-T-----------------EVFHPEDEFL-------------------- 227 (386)
T ss_dssp EETTEEEEEETTSCEEEEECCSSSCCEE-EE-C-----------------CCCSCTTSCB--------------------
T ss_pred CCCceeEEECCCCCEEEEECCCCCeEEE-ee-c-----------------ceeccccccc--------------------
Confidence 4456677888899888888754211100 00 0 0000110000
Q ss_pred ceeeeecc-CCCCCeEEEecCCCeEEEEEcCCCe--eeeEEee--------ccceeceeEEEEcCCCCEEEEecC-----
Q psy988 251 RKISGIEP-MPGEDKILVTSNDSRIRLYDLRDLN--LSCKYKG--------YVNVSSQIKASFSHDGKYIVSGSE----- 314 (408)
Q Consensus 251 ~~i~~~~~-~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~--------~~~~~~v~~~~~s~~~~~l~~~~~----- 314 (408)
.....| .++|++++ .+.+|++.+.|+.+.. ....+.. .........++++|+++.++....
T Consensus 228 --~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~ 304 (386)
T 3sjl_D 228 --INHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEW 304 (386)
T ss_dssp --CSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTT
T ss_pred --cccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEecccccc
Confidence 001133 24565444 4557999999997654 3333320 001122334688999998887642
Q ss_pred -----CceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCccc-EEEE-EecCCe
Q psy988 315 -----NQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGY-VLVS-ADFNGV 387 (408)
Q Consensus 315 -----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s-~~~dg~ 387 (408)
.+.|.+.|+.+. +.+..+.- ...+.+++++| |++ +|++ ...++.
T Consensus 305 ~hk~~~~~V~viD~~t~------------kv~~~i~v-g~~~~~lavs~----------------D~~~~ly~tn~~~~~ 355 (386)
T 3sjl_D 305 RHKTASRFVVVLDAKTG------------ERLAKFEM-GHEIDSINVSQ----------------DEKPLLYALSTGDKT 355 (386)
T ss_dssp CTTSCEEEEEEEETTTC------------CEEEEEEE-EEEECEEEECS----------------SSSCEEEEEETTTTE
T ss_pred ccCCCCCEEEEEECCCC------------eEEEEEEC-CCCcceEEECC----------------CCCeEEEEEcCCCCe
Confidence 257999999886 45555542 23688999999 775 5555 455999
Q ss_pred EEEEeCCCCCCcccccccc
Q psy988 388 IRVFLNKTKPKHSSLPVSA 406 (408)
Q Consensus 388 v~iw~~~~~~~~~~~~~s~ 406 (408)
|.++|..+++....++...
T Consensus 356 VsViD~~t~k~~~~i~~~~ 374 (386)
T 3sjl_D 356 LYIHDAESGEELRSVNQLG 374 (386)
T ss_dssp EEEEETTTCCEEEEECCCC
T ss_pred EEEEECCCCcEEEEecCCC
Confidence 9999999999888776643
No 195
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.75 E-value=1.7e-15 Score=123.76 Aligned_cols=243 Identities=8% Similarity=-0.026 Sum_probs=161.5
Q ss_pred eeEEEEEecCCCEEE-EEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEcc
Q psy988 69 LITAANFCENGKFAV-VGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLR 147 (408)
Q Consensus 69 ~v~~~~~~~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 147 (408)
...+++++++|++++ +...++.|.+|+..+..... .. ......+.++++.++++.+++.. ++.|.+||..
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~----~~----~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~ 95 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV----LP----FNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAG 95 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EE----CC----CCSCCSCCCEEECTTCCEEEEET-TTEEEEECTT
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccce----Ee----eCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCC
Confidence 678899999999766 54678999999876543211 00 11123678899999888555544 8899999987
Q ss_pred CcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCc
Q psy988 148 DLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCP 227 (408)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 227 (408)
..... .+.. .....+..++++++|+.+++...++.|.+|+..+..... .
T Consensus 96 ~~~~~-~~~~-~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~------------~----------------- 144 (270)
T 1rwi_B 96 SNNQT-VLPF-DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV------------L----------------- 144 (270)
T ss_dssp CSCCE-ECCC-CSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEE------------C-----------------
T ss_pred CceEe-eeec-CCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEe------------e-----------------
Confidence 65432 2221 112346789999999877776677889988653211000 0
Q ss_pred ceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCC
Q psy988 228 ELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGK 307 (408)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 307 (408)
.......+..++++++++.+++...++.|.+||............ ....+..++++++|+
T Consensus 145 ------------------~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~--~~~~p~~i~~d~~g~ 204 (270)
T 1rwi_B 145 ------------------PFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFT--DITAPWGIAVDEAGT 204 (270)
T ss_dssp ------------------CCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCS--SCCSEEEEEECTTCC
T ss_pred ------------------ccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeeccc--CCCCceEEEECCCCC
Confidence 001112355677778887677777788999999886654322211 123567899999998
Q ss_pred EEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCe
Q psy988 308 YIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGV 387 (408)
Q Consensus 308 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~ 387 (408)
++++...++.|.+|+...... ......+...+.+++++| +|+++++...++.
T Consensus 205 l~v~~~~~~~v~~~~~~~~~~------------~~~~~~~~~~p~~i~~~~----------------~g~l~v~~~~~~~ 256 (270)
T 1rwi_B 205 VYVTEHNTNQVVKLLAGSTTS------------TVLPFTGLNTPLAVAVDS----------------DRTVYVADRGNDR 256 (270)
T ss_dssp EEEEETTTSCEEEECTTCSCC------------EECCCCSCSCEEEEEECT----------------TCCEEEEEGGGTE
T ss_pred EEEEECCCCcEEEEcCCCCcc------------eeeccCCCCCceeEEECC----------------CCCEEEEECCCCE
Confidence 888877788999999865411 111112335688999999 8999999999999
Q ss_pred EEEEeCCCCCCc
Q psy988 388 IRVFLNKTKPKH 399 (408)
Q Consensus 388 v~iw~~~~~~~~ 399 (408)
|+++++...+.+
T Consensus 257 v~~~~~~~~~~~ 268 (270)
T 1rwi_B 257 VVKLTSLEHHHH 268 (270)
T ss_dssp EEEECCCGGGSC
T ss_pred EEEEcCCCcccc
Confidence 999999877654
No 196
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.75 E-value=3.4e-14 Score=120.63 Aligned_cols=292 Identities=8% Similarity=-0.032 Sum_probs=183.4
Q ss_pred EEcCCCCCEEEEEeC--CC---cEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEe----------cCCEEEE
Q psy988 29 CFHPRDDRYFLSGSL--DG---KLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGS----------YDGRCIF 93 (408)
Q Consensus 29 ~~sp~~~~~l~t~~~--dg---~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~i 93 (408)
...| +++++++... .. .|.++|..+++.. ..+.....+ .+.++|||++++++. .++.|.+
T Consensus 27 ~~~~-~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~--~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~v 101 (373)
T 2mad_H 27 APGA-DGRRSYINLPAHHSAIIQQWVLDAGSGSIL--GHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEV 101 (373)
T ss_pred cCCC-CCCEEEEeCCcccCCccEEEEEECCCCeEE--EEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEE
Confidence 3446 7777777653 22 8899999988765 455443333 999999999999886 3678999
Q ss_pred EeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeC--CCeEEEEEccCccccee-ecCccccccceEEEEe
Q psy988 94 YTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSN--DSRIRLYDLRDLNLSCK-YKGYVNVSSQIKASFS 170 (408)
Q Consensus 94 w~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~ 170 (408)
||..+.+........... ..........+.++|++++|+++.. ++.|.++| .+++.... +.... ++.+.
T Consensus 102 iD~~t~~~~~~i~~~~~~-~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~------~~~~~ 173 (373)
T 2mad_H 102 FDPVTFLPIADIELPDAP-RFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT------CYHIH 173 (373)
T ss_pred EECCCCcEEEEEECCCcc-ccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc------eEEEE
Confidence 999987766555432000 0001123457899999999999864 57899999 99887766 43321 23455
Q ss_pred cCC-CEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCC
Q psy988 171 HDG-KYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNAT 249 (408)
Q Consensus 171 ~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (408)
|++ +.+++.+.||.+.++|. ++......... ..+ ....++
T Consensus 174 ~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~------~~~-~~~~p~------------------------------- 214 (373)
T 2mad_H 174 PGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVG------AML-TAAQNL------------------------------- 214 (373)
T ss_pred eCCCceEEEEcCCCCEEEEEC-CCcEEEEEecc------ccc-cCCcce-------------------------------
Confidence 555 44566678899999998 54322110000 000 000000
Q ss_pred CceeeeeccCCCCCeEEEecCCCeEEEEEcCCCe--eeeEEeecc--------ceeceeEEEEcCCCCEEEEecC-----
Q psy988 250 GRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLN--LSCKYKGYV--------NVSSQIKASFSHDGKYIVSGSE----- 314 (408)
Q Consensus 250 ~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~--------~~~~v~~~~~s~~~~~l~~~~~----- 314 (408)
.....+.+++..++..+..+.+.+.|+.+.. ....+.... .......+.++|+++.+++...
T Consensus 215 ---~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~ 291 (373)
T 2mad_H 215 ---LTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAW 291 (373)
T ss_pred ---eecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcc
Confidence 0112233333333444467789998886543 222221100 0112234789999998877543
Q ss_pred -----CceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCccc-EEEEEe-cCCe
Q psy988 315 -----NQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGY-VLVSAD-FNGV 387 (408)
Q Consensus 315 -----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~~-~dg~ 387 (408)
++.|.++|..+. +.+..+. -.....+++|+| ||+ +++++. .++.
T Consensus 292 ~~~~~~~~V~VID~~t~------------~vv~~i~-~g~~p~~i~~s~----------------Dg~~~l~v~~~~~~~ 342 (373)
T 2mad_H 292 KLHAAAKEVTSVTGLVG------------QTSSQIS-LGHDVDAISVAQ----------------DGGPDLYALSAGTEV 342 (373)
T ss_pred cccCCCCeEEEEECCCC------------EEEEEEE-CCCCcCeEEECC----------------CCCeEEEEEcCCCCe
Confidence 357999999876 4555553 233578999999 888 777776 4899
Q ss_pred EEEEeCCCCCCccc-ccc
Q psy988 388 IRVFLNKTKPKHSS-LPV 404 (408)
Q Consensus 388 v~iw~~~~~~~~~~-~~~ 404 (408)
|.++|+.+++.... .++
T Consensus 343 V~ViD~~t~~vv~~i~~v 360 (373)
T 2mad_H 343 LHIYDAGAGDQDQSTVEL 360 (373)
T ss_pred EEEEECCCCCEEeeecCC
Confidence 99999999998777 444
No 197
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.74 E-value=2.3e-15 Score=140.49 Aligned_cols=280 Identities=12% Similarity=0.013 Sum_probs=168.3
Q ss_pred cCCCCCEEEEEeCCCc---EEEEecC-----CCCceeee----eecCCceeeEEEEEecCCCEEEEEecC-----CEEEE
Q psy988 31 HPRDDRYFLSGSLDGK---LRLWNIP-----DKKVAVWN----EVEGQTKLITAANFCENGKFAVVGSYD-----GRCIF 93 (408)
Q Consensus 31 sp~~~~~l~t~~~dg~---i~iw~~~-----~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i 93 (408)
+| +|++++....++. -.+|... +++...+. ...+|...+..++|||||++|+.++.+ ..|++
T Consensus 115 ~p-dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v 193 (741)
T 1yr2_A 115 QR-RGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKF 193 (741)
T ss_dssp EE-ETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEE
T ss_pred EE-ECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEE
Confidence 37 7888776665432 5555543 33332111 112344578899999999999887654 46999
Q ss_pred EeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCe--------------EEEEEccCcccc--eeecC
Q psy988 94 YTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSR--------------IRLYDLRDLNLS--CKYKG 157 (408)
Q Consensus 94 w~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~--------------i~i~d~~~~~~~--~~~~~ 157 (408)
||+.+++..... ... ..+..++|+|| +.|+.+..++. |++|++.++... ..+..
T Consensus 194 ~dl~tg~~~~~~-~~~--------~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~ 263 (741)
T 1yr2_A 194 VGVADGKPLADE-LKW--------VKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFAT 263 (741)
T ss_dssp EETTTCCEEEEE-EEE--------EESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECC
T ss_pred EECCCCCCCCcc-CCC--------ceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEecc
Confidence 999998764321 111 12357899999 99988876543 899999776532 22333
Q ss_pred ccccccceEEEEecCCCEEEEeecCc-----eEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeee
Q psy988 158 YVNVSSQIKASFSHDGKYIVSGSENQ-----CIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIA 232 (408)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 232 (408)
......+..+.|+|||++|+..+.++ .|++||+.++... ....+..+....... ++|+
T Consensus 264 ~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~----------~~~~l~~~~~~~~~~-~~~d------ 326 (741)
T 1yr2_A 264 PELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIG----------PVTALIPDLKAQWDF-VDGV------ 326 (741)
T ss_dssp TTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEEC----------CCEEEECSSSSCEEE-EEEE------
T ss_pred CCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCc----------ccEEecCCCCceEEE-Eecc------
Confidence 22222366789999999988877544 8999998654111 001111111111111 1244
Q ss_pred ecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecC----CCeEEEEEcCCC--eeeeEEeeccceeceeEEEEcCCC
Q psy988 233 QMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSN----DSRIRLYDLRDL--NLSCKYKGYVNVSSQIKASFSHDG 306 (408)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~--~~~~~~~~~~~~~~v~~~~~s~~~ 306 (408)
++.|+..+. ++.|.+||+.++ +....+..+.. .+..++++ ++
T Consensus 327 -----------------------------g~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~--~l~~~~~~-~~ 374 (741)
T 1yr2_A 327 -----------------------------GDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKD--NLESVGIA-GN 374 (741)
T ss_dssp -----------------------------TTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSS--EEEEEEEE-BT
T ss_pred -----------------------------CCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCC--eEEEEEEE-CC
Confidence 444444433 466999999874 33333333322 35567777 56
Q ss_pred CEEEEecCCceEEEeeccccCccccccccCccccceeeee-eccceEEEEecCCchhhhhccCCCCCCCcccEEE-E---
Q psy988 307 KYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKA-HNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLV-S--- 381 (408)
Q Consensus 307 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-s--- 381 (408)
.++++...|+..+||.+.... .....+.. +.+.+..+.++| +++.|+ +
T Consensus 375 ~lv~~~~~dg~~~l~~~~~~g-----------~~~~~l~~~~~~~v~~~~~s~----------------d~~~l~~~~ss 427 (741)
T 1yr2_A 375 RLFASYIHDAKSQVLAFDLDG-----------KPAGAVSLPGIGSASGLSGRP----------------GDRHAYLSFSS 427 (741)
T ss_dssp EEEEEEEETTEEEEEEEETTS-----------CEEEECBCSSSCEEEEEECCB----------------TCSCEEEEEEE
T ss_pred EEEEEEEECCEEEEEEEeCCC-----------CceeeccCCCCeEEEEeecCC----------------CCCEEEEEEcC
Confidence 677888889988887665210 22233333 356788999999 666444 2
Q ss_pred EecCCeEEEEeCCCCC
Q psy988 382 ADFNGVIRVFLNKTKP 397 (408)
Q Consensus 382 ~~~dg~v~iw~~~~~~ 397 (408)
....++|++||+.+++
T Consensus 428 ~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 428 FTQPATVLALDPATAK 443 (741)
T ss_dssp TTEEEEEEEEETTTTE
T ss_pred CCCCCEEEEEECCCCc
Confidence 2345899999998765
No 198
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.74 E-value=1.1e-14 Score=118.39 Aligned_cols=254 Identities=12% Similarity=0.076 Sum_probs=169.5
Q ss_pred CCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecC
Q psy988 78 NGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKG 157 (408)
Q Consensus 78 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 157 (408)
.++.|++++.++.|.+||.++++....+.... ...+.++.+.|+|+.++ +.++.|..||. +++.+..+..
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~-------~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~ 73 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEK-------GWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAA 73 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCT-------TCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEEC
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCc-------cCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcC
Confidence 46789999999999999998998776654311 12578889999998888 34678999999 7888887775
Q ss_pred ccccccceEEEEecCCCEEEEeec-CceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCC
Q psy988 158 YVNVSSQIKASFSHDGKYIVSGSE-NQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEP 236 (408)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 236 (408)
... ..+.++.+.++|+++++.+. ++.+..+|.. ++.. ..+.+....
T Consensus 74 ~~~-~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~-Gk~l----------------------~~~~~~~~~--------- 120 (276)
T 3no2_A 74 PAG-CEMQTARILPDGNALVAWCGHPSTILEVNMK-GEVL----------------------SKTEFETGI--------- 120 (276)
T ss_dssp CTT-CEEEEEEECTTSCEEEEEESTTEEEEEECTT-SCEE----------------------EEEEECCSC---------
T ss_pred CCC-ccccccEECCCCCEEEEecCCCCEEEEEeCC-CCEE----------------------EEEeccCCC---------
Confidence 321 23567889999999998876 6777766642 2111 111110000
Q ss_pred CCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCc
Q psy988 237 DKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQ 316 (408)
Q Consensus 237 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 316 (408)
..+...+..+++.++|+++++...++.|..||.. |+.+.++.... ....+...++|++++++..++
T Consensus 121 ----------~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~---~~~~~~~~~~g~~~v~~~~~~ 186 (276)
T 3no2_A 121 ----------ERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSG---TPFSSAFLDNGDCLVACGDAH 186 (276)
T ss_dssp ----------SSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSS---CCCEEEECTTSCEEEECBTTS
T ss_pred ----------CcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCC---CccceeEcCCCCEEEEeCCCC
Confidence 0111123455678889999999999999999988 99888887642 344678889999999999888
Q ss_pred eEEEeeccccCccccccccCccccceeeeee------ccceEEEEecCCchhhhhccCCCC----CCCcccEEEEEecCC
Q psy988 317 CIYIWKTHHDYAKFSSVRRDRNDFWEGIKAH------NAVVTCAVFAPCPELIIAQMEPDK----SESTGYVLVSADFNG 386 (408)
Q Consensus 317 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h------~~~v~~~~~~~~~~~~~~~~~~~~----~s~~~~~l~s~~~dg 386 (408)
.|..+|..+++. +-.+..+ ...+..++..++|..+++...... .+.+++.+. -+.||
T Consensus 187 ~v~~~d~~tG~~------------~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~-~~~~g 253 (276)
T 3no2_A 187 CFVQLNLESNRI------------VRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVE-IDSEG 253 (276)
T ss_dssp EEEEECTTTCCE------------EEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEE-ECTTS
T ss_pred eEEEEeCcCCcE------------EEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEE-ECCCC
Confidence 999999987733 2222211 123678888886555555432110 001223333 34467
Q ss_pred eEEEEeCCCCCCcccc
Q psy988 387 VIRVFLNKTKPKHSSL 402 (408)
Q Consensus 387 ~v~iw~~~~~~~~~~~ 402 (408)
.+ +|.+...+...++
T Consensus 254 ~~-~W~~~~~~~~~~~ 268 (276)
T 3no2_A 254 KV-VWQLNDKVKFGMI 268 (276)
T ss_dssp BE-EEEECCTTTSCCC
T ss_pred CE-EEEecCcccccce
Confidence 66 7887777666544
No 199
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.73 E-value=2.5e-15 Score=122.69 Aligned_cols=240 Identities=7% Similarity=0.037 Sum_probs=159.0
Q ss_pred ceEEEEEcCCCCCEEE-EEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeee
Q psy988 24 FVTAICFHPRDDRYFL-SGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYH 102 (408)
Q Consensus 24 ~v~~~~~sp~~~~~l~-t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~ 102 (408)
...+++++| ++++++ +...++.|.+|+..+..... ....+...+.++++.++|+++++.. ++.|.+||..+....
T Consensus 25 ~p~~i~~~~-~g~l~v~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~ 100 (270)
T 1rwi_B 25 SPSGVAVDS-AGNVYVTSEGMYGRVVKLATGSTGTTV--LPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT 100 (270)
T ss_dssp CEEEEEECT-TCCEEEEECSSSCEEEEECC-----EE--CCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE
T ss_pred CccceEECC-CCCEEEEccCCCCcEEEecCCCcccce--EeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe
Confidence 788999999 888777 54678999999976654331 1123335678899999998666555 889999998765432
Q ss_pred EEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecC
Q psy988 103 TQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSEN 182 (408)
Q Consensus 103 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 182 (408)
. . . ......+.++++.++++.+++...++.|.+|+..+....... ......+..++++++|+.+++...+
T Consensus 101 ~-~---~----~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~--~~~~~~p~~i~~~~~g~l~v~~~~~ 170 (270)
T 1rwi_B 101 V-L---P----FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLP--FTGLNDPDGVAVDNSGNVYVTDTDN 170 (270)
T ss_dssp E-C---C----CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECC--CCSCCSCCCEEECTTCCEEEEEGGG
T ss_pred e-e---e----cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeec--cccCCCceeEEEeCCCCEEEEECCC
Confidence 1 1 0 011246889999999986666667789999976554332211 1122235678999999877666667
Q ss_pred ceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCC
Q psy988 183 QCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGE 262 (408)
Q Consensus 183 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 262 (408)
+.|.+||......... .. .....+..++++++|
T Consensus 171 ~~i~~~~~~~~~~~~~------------~~-----------------------------------~~~~~p~~i~~d~~g 203 (270)
T 1rwi_B 171 NRVVKLEAESNNQVVL------------PF-----------------------------------TDITAPWGIAVDEAG 203 (270)
T ss_dssp TEEEEECTTTCCEEEC------------CC-----------------------------------SSCCSEEEEEECTTC
T ss_pred CEEEEEecCCCceEee------------cc-----------------------------------cCCCCceEEEECCCC
Confidence 8999998754211100 00 011335566677777
Q ss_pred CeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeecccc
Q psy988 263 DKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHD 326 (408)
Q Consensus 263 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 326 (408)
..+++...++.|.+||........ .. ..+...+..++++++|+++++...++.|+++++...
T Consensus 204 ~l~v~~~~~~~v~~~~~~~~~~~~-~~-~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 204 TVYVTEHNTNQVVKLLAGSTTSTV-LP-FTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp CEEEEETTTSCEEEECTTCSCCEE-CC-CCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred CEEEEECCCCcEEEEcCCCCccee-ec-cCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence 666777778899999987654322 21 112235778999999998888889999999998764
No 200
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.73 E-value=3.8e-14 Score=117.59 Aligned_cols=282 Identities=11% Similarity=-0.003 Sum_probs=184.4
Q ss_pred eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCe
Q psy988 21 HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLK 100 (408)
Q Consensus 21 h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 100 (408)
....+.++.+.+ +++++++...++.|.+|+.. ++... ..+..+...+..+++.++|...++...++.|..+|.. ++
T Consensus 18 ~~~~p~~i~~d~-~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~ 93 (300)
T 2qc5_A 18 PDSGPYGITSSE-DGKVWFTQHKANKISSLDQS-GRIKE-FEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GG 93 (300)
T ss_dssp TTCCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEE-EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred CCCCcceeeECC-CCCEEEEcCCCCeEEEECCC-CceEE-EECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CC
Confidence 356789999999 88887777678999999987 55442 2333344678999999999877776668899999987 43
Q ss_pred eeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEee
Q psy988 101 YHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS 180 (408)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 180 (408)
.. ..... .....+.++++.++++.+++...++.|..+|.. ++.. .+........+..+++.++++..++..
T Consensus 94 ~~-~~~~~------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~-~~~~~~~~~~~~~i~~d~~g~l~v~~~ 164 (300)
T 2qc5_A 94 FT-EYPLP------QPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIY-EYDLPNKGSYPAFITLGSDNALWFTEN 164 (300)
T ss_dssp EE-EEECS------STTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECTTSSEEEEET
T ss_pred eE-EecCC------CCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEE-EccCCCCCCCceeEEECCCCCEEEEec
Confidence 32 11111 112468899999988877766667899999987 5443 222221223467889999998666655
Q ss_pred cCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCC
Q psy988 181 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMP 260 (408)
Q Consensus 181 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 260 (408)
.++.|..+|.. +.... +.. + .....+..+++.+
T Consensus 165 ~~~~i~~~~~~-g~~~~-----------------------~~~-~----------------------~~~~~~~~i~~d~ 197 (300)
T 2qc5_A 165 QNNSIGRITNT-GKLEE-----------------------YPL-P----------------------TNAAAPVGITSGN 197 (300)
T ss_dssp TTTEEEEECTT-CCEEE-----------------------EEC-S----------------------STTCCEEEEEECT
T ss_pred CCCeEEEECCC-CcEEE-----------------------eeC-C----------------------CCCCCcceEEECC
Confidence 57788888862 21100 000 0 1122455666677
Q ss_pred CCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCcccc
Q psy988 261 GEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDF 340 (408)
Q Consensus 261 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 340 (408)
++..+++....+.|.+||. +++... +........+..++++++|++.++...++.|..|+.. +.. .
T Consensus 198 ~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~~-----------~ 263 (300)
T 2qc5_A 198 DGALWFVEIMGNKIGRITT-TGEISE-YDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND-NTI-----------Q 263 (300)
T ss_dssp TSSEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCE-----------E
T ss_pred CCCEEEEccCCCEEEEEcC-CCcEEE-EECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC-CcE-----------E
Confidence 7766666666788999998 454433 2222223357789999999977777677899999974 211 0
Q ss_pred ceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCC
Q psy988 341 WEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNK 394 (408)
Q Consensus 341 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~ 394 (408)
...+......+.++++.+ +|+++++.. . .|..++..
T Consensus 264 ~~~~~~~~~~~~~i~~~~----------------~g~l~v~~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 264 EYQLQTENAEPHGITFGK----------------DGSVWFALK-C-KIGKLNLN 299 (300)
T ss_dssp EEECCSTTCCCCCEEECT----------------TSCEEEECS-S-EEEEEEEC
T ss_pred EEECCccCCccceeEeCC----------------CCCEEEEcc-C-ceEEeCCC
Confidence 011122335578899999 888777665 4 67666653
No 201
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.73 E-value=2.1e-14 Score=116.78 Aligned_cols=183 Identities=9% Similarity=0.043 Sum_probs=139.7
Q ss_pred CceEEEEeccCCeeEeEEE-eC-CceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCC-ceeeEEEEEecC
Q psy988 2 DKTVRLWHISRKECLCCFQ-HI-DFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQ-TKLITAANFCEN 78 (408)
Q Consensus 2 Dg~i~vwd~~~~~~~~~~~-h~-~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~-~~~v~~~~~~~~ 78 (408)
|+.|.+||.++++.+..+. +. ..+.++.++| +|++|+ +.++.|..||. +++.+ ..+..+ ...+.++.+.++
T Consensus 14 ~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~--W~~~~~~~~~~~~~~~~~d 87 (276)
T 3no2_A 14 WNKIAIINKDTKEIVWEYPLEKGWECNSVAATK-AGEILF--SYSKGAKMITR-DGREL--WNIAAPAGCEMQTARILPD 87 (276)
T ss_dssp CSEEEEEETTTTEEEEEEECCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TSCEE--EEEECCTTCEEEEEEECTT
T ss_pred CCEEEEEECCCCeEEEEeCCCccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CCCEE--EEEcCCCCccccccEECCC
Confidence 7899999999999999988 44 4799999999 999888 34788999998 67655 445443 356888999999
Q ss_pred CCEEEEEec-CCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecC
Q psy988 79 GKFAVVGSY-DGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKG 157 (408)
Q Consensus 79 ~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 157 (408)
|+++++.+. ++.+..++. +++.......... ...+......+.+.++++++++...++.|..||.+ ++.+..+..
T Consensus 88 G~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~--~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~ 163 (276)
T 3no2_A 88 GNALVAWCGHPSTILEVNM-KGEVLSKTEFETG--IERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKL 163 (276)
T ss_dssp SCEEEEEESTTEEEEEECT-TSCEEEEEEECCS--CSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEEC
T ss_pred CCEEEEecCCCCEEEEEeC-CCCEEEEEeccCC--CCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEEC
Confidence 999999887 788888886 4555544443221 11111245566788999999999999999999998 888887765
Q ss_pred ccccccceEEEEecCCCEEEEeecCceEEEeeeccceeee
Q psy988 158 YVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKF 197 (408)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 197 (408)
.. .+..+...++|+.++++..++.|..+|..+++...
T Consensus 164 ~~---~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w 200 (276)
T 3no2_A 164 SG---TPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVR 200 (276)
T ss_dssp SS---CCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEE
T ss_pred CC---CccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEE
Confidence 42 24457788999999998888899999987665443
No 202
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.72 E-value=9e-15 Score=124.60 Aligned_cols=270 Identities=10% Similarity=-0.004 Sum_probs=173.2
Q ss_pred ceEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEEe----------CCCcEEEEecCCCCceeeeeecCC-----c
Q psy988 3 KTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGS----------LDGKLRLWNIPDKKVAVWNEVEGQ-----T 67 (408)
Q Consensus 3 g~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~~----------~dg~i~iw~~~~~~~~~~~~~~~~-----~ 67 (408)
+.|.+.|..+++.+..+.-...- .+.++| |+++|+++. .++.|.++|..+.+......+.+. .
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~~P-gia~Sp-Dgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g 176 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGFLP-HPVAAE-DGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVG 176 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECSSC-EEEECT-TSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBS
T ss_pred CeEEEEECCCCEEEEEEECCCCC-ceEECC-CCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccC
Confidence 78999999999999999843334 899999 888887775 367899999999887632233200 1
Q ss_pred eeeEEEEEecCCCEEEEEec--CCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCC-CeEEEeeCCCeEEEE
Q psy988 68 KLITAANFCENGKFAVVGSY--DGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGE-DKILVTSNDSRIRLY 144 (408)
Q Consensus 68 ~~v~~~~~~~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~ 144 (408)
.....+.|+|||++++++.. ++.|.+.|+.+.+....+.... . ....|++ ..+++.+.||.+.+.
T Consensus 177 ~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g----------~--~~~~p~g~~~~v~~~~dG~~~~V 244 (426)
T 3c75_H 177 TYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD----------C--YHIFPASPTVFYMNCRDGSLARV 244 (426)
T ss_dssp CCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----------E--EEEEEEETTEEEEEETTSSEEEE
T ss_pred CCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC----------c--eeeccCCCcEEEEEcCCCCEEEE
Confidence 23457789999999999874 5799999999998776654311 1 1223333 445555677777777
Q ss_pred EccCccccee----ecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeeccc-CCCccccccccccceEE
Q psy988 145 DLRDLNLSCK----YKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRR-DRNDFWEGIKAHNAVVT 219 (408)
Q Consensus 145 d~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~ 219 (408)
+..+++.... +...... ....+.+.+++..++.....+.+.+.|............. ....... .........
T Consensus 245 ~~~~~~v~~~~~~~~~v~~~p-~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~-~g~~p~g~~ 322 (426)
T 3c75_H 245 DFADGETKVTNTEVFHTEDEL-LINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERA-DDWRPGGWQ 322 (426)
T ss_dssp ECCTTCCEEEECCCCSCTTSC-BCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGG-GTEEECSSS
T ss_pred ECCCCcEEEEeeeeeccCCCc-eeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccc-cccccCCce
Confidence 7755544321 1111111 1123567899888877778899999998654322110000 0000000 000000011
Q ss_pred EEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEec----------CCCeEEEEEcCCCeeeeEEe
Q psy988 220 CAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTS----------NDSRIRLYDLRDLNLSCKYK 289 (408)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----------~d~~i~i~d~~~~~~~~~~~ 289 (408)
.++++|++ +.+++.. .++.|.++|..+.+.+..+.
T Consensus 323 ~va~s~dg-----------------------------------~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~ 367 (426)
T 3c75_H 323 QTAYHRQS-----------------------------------DRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIE 367 (426)
T ss_dssp CEEEEGGG-----------------------------------TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE
T ss_pred eeEEcCCC-----------------------------------CEEEEEecccccccccCCCCEEEEEECCCCeEEEEEE
Confidence 13444444 4444432 23579999999999998887
Q ss_pred eccceeceeEEEEcCCCC-EEEEec-CCceEEEeecccc
Q psy988 290 GYVNVSSQIKASFSHDGK-YIVSGS-ENQCIYIWKTHHD 326 (408)
Q Consensus 290 ~~~~~~~v~~~~~s~~~~-~l~~~~-~dg~i~iw~~~~~ 326 (408)
... ....+.|+|||+ ++++.. .++.|.++|+.+.
T Consensus 368 vg~---~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~ 403 (426)
T 3c75_H 368 LGH---EIDSINVSQDAEPLLYALSAGTQTLHIYDAATG 403 (426)
T ss_dssp EEE---EECEEEECCSSSCEEEEEETTTTEEEEEETTTC
T ss_pred CCC---CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCC
Confidence 533 356899999999 888877 5899999999987
No 203
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.72 E-value=6e-15 Score=125.69 Aligned_cols=287 Identities=9% Similarity=0.035 Sum_probs=184.8
Q ss_pred CCCEEEEEeC-C----CcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEe----------cCCEEEEEeccC
Q psy988 34 DDRYFLSGSL-D----GKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGS----------YDGRCIFYTTDQ 98 (408)
Q Consensus 34 ~~~~l~t~~~-d----g~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iw~~~~ 98 (408)
+++.+++... + +.|.++|..+.+.. ..+..-..+ .+.++|||++++++. .++.|.++|..+
T Consensus 83 ~~~~vyV~n~~~~~~~~~VsVID~~t~~vv--~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t 158 (426)
T 3c75_H 83 DARRVYIQDPAHFAAITQQFVIDGSTGRIL--GMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVT 158 (426)
T ss_dssp CTTEEEEEECTTTCSSEEEEEEETTTTEEE--EEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred CCCEEEEECCCcCCCCCeEEEEECCCCEEE--EEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCC
Confidence 6666665554 2 69999999998877 344433334 899999999998886 367899999999
Q ss_pred CeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeC--CCeEEEEEccCcccceeecCccccccceEEEEecCC-CE
Q psy988 99 LKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSN--DSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDG-KY 175 (408)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 175 (408)
.+....+...... ..........+.++||+++++++.. ++.|.+.|+.+++.+..+..... ....|++ ..
T Consensus 159 ~~vv~~I~v~g~~-r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~------~~~~p~g~~~ 231 (426)
T 3c75_H 159 FLPIADIELPDAP-RFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC------YHIFPASPTV 231 (426)
T ss_dssp CCEEEEEEETTCC-CCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE------EEEEEEETTE
T ss_pred CcEEEEEECCCcc-ccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc------eeeccCCCcE
Confidence 9877766542100 0001124567899999999999864 57899999999988777654211 2233433 45
Q ss_pred EEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeee
Q psy988 176 IVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISG 255 (408)
Q Consensus 176 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 255 (408)
+++.+.||.+.+.+...+...... . . .+.. ........
T Consensus 232 ~v~~~~dG~~~~V~~~~~~v~~~~-~-------~------------~~~v----------------------~~~p~~~~ 269 (426)
T 3c75_H 232 FYMNCRDGSLARVDFADGETKVTN-T-------E------------VFHT----------------------EDELLINH 269 (426)
T ss_dssp EEEEETTSSEEEEECCTTCCEEEE-C-------C------------CCSC----------------------TTSCBCSC
T ss_pred EEEEcCCCCEEEEECCCCcEEEEe-e-------e------------eecc----------------------CCCceeeE
Confidence 566667777777776322111000 0 0 0000 00000112
Q ss_pred eccCCCCCeEEEecCCCeEEEEEcCCCeee--eEEeec--------cceeceeEEEEcCCCCEEEEecC----------C
Q psy988 256 IEPMPGEDKILVTSNDSRIRLYDLRDLNLS--CKYKGY--------VNVSSQIKASFSHDGKYIVSGSE----------N 315 (408)
Q Consensus 256 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~~--------~~~~~v~~~~~s~~~~~l~~~~~----------d 315 (408)
+.+.+++..++..+..+.+.+.|....... ..+... ........++++|+++.+++... +
T Consensus 270 ~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s 349 (426)
T 3c75_H 270 PAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAAS 349 (426)
T ss_dssp CEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCE
T ss_pred eeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCC
Confidence 345677777777677889999998754422 111100 00111223689999998777542 3
Q ss_pred ceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCccc-EEEEEe-cCCeEEEEeC
Q psy988 316 QCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGY-VLVSAD-FNGVIRVFLN 393 (408)
Q Consensus 316 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~~-~dg~v~iw~~ 393 (408)
+.|.++|..+. +.+..+..- ....+++|+| ||+ +|+++. .++.|.++|+
T Consensus 350 ~~VsVID~~T~------------kvv~~I~vg-~~P~gia~sp----------------Dg~~~lyv~n~~s~~VsVID~ 400 (426)
T 3c75_H 350 RFVVVLNAETG------------ERINKIELG-HEIDSINVSQ----------------DAEPLLYALSAGTQTLHIYDA 400 (426)
T ss_dssp EEEEEEETTTC------------CEEEEEEEE-EEECEEEECC----------------SSSCEEEEEETTTTEEEEEET
T ss_pred CEEEEEECCCC------------eEEEEEECC-CCcCeEEEcc----------------CCCEEEEEEcCCCCeEEEEEC
Confidence 57999999886 455555422 2478999999 888 888877 5999999999
Q ss_pred CCCCCcccc
Q psy988 394 KTKPKHSSL 402 (408)
Q Consensus 394 ~~~~~~~~~ 402 (408)
.+++....+
T Consensus 401 ~t~kvv~tI 409 (426)
T 3c75_H 401 ATGEELRSV 409 (426)
T ss_dssp TTCCEEEEE
T ss_pred CCCCEEEEe
Confidence 999988775
No 204
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.71 E-value=1.1e-13 Score=115.73 Aligned_cols=247 Identities=13% Similarity=0.136 Sum_probs=153.6
Q ss_pred ceeeEEEEEecCCCEEEE-------EecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCC
Q psy988 67 TKLITAANFCENGKFAVV-------GSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDS 139 (408)
Q Consensus 67 ~~~v~~~~~~~~~~~l~~-------~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 139 (408)
-....+++|+++|..+++ ...++.|.+|+..+++..... . .....+...+.++++++++..+++++..+
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~-~---~~~~~~~~~~~~i~~~~~~g~l~v~~~~~ 92 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVIC-K---PEVNGYGGIPAGCQCDRDANQLFVADMRL 92 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEE-C---CEETTEECCEEEEEECSSSSEEEEEETTT
T ss_pred CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEE-e---cccCCCCCCCceEEEecCCCcEEEEECCC
Confidence 345678999999987777 578899999998776643211 1 00011234688999999834455555555
Q ss_pred eEEEEEccCccccee-ecCc--cccccceEEEEecCCCEEEEeecC---------------ceEEEeeeccceeeeeecc
Q psy988 140 RIRLYDLRDLNLSCK-YKGY--VNVSSQIKASFSHDGKYIVSGSEN---------------QCIYIWKTHHDYAKFSSVR 201 (408)
Q Consensus 140 ~i~i~d~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~l~~~~~d---------------g~i~i~d~~~~~~~~~~~~ 201 (408)
.|.+||.. ++.... .... .....+..++++++|+.+++...+ +.|..||.. +...
T Consensus 93 ~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~----- 165 (314)
T 1pjx_A 93 GLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMI----- 165 (314)
T ss_dssp EEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEE-----
T ss_pred CEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEE-----
Confidence 79999988 654332 2111 112346789999999877766554 455555542 1100
Q ss_pred cCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccC----CCCCeE-EEecCCCeEEE
Q psy988 202 RDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPM----PGEDKI-LVTSNDSRIRL 276 (408)
Q Consensus 202 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~l-~~~~~d~~i~i 276 (408)
.+...... +..++++ |+++.+ ++...++.|.+
T Consensus 166 --------~~~~~~~~-----------------------------------~~~i~~~~~~d~dg~~l~v~~~~~~~i~~ 202 (314)
T 1pjx_A 166 --------QVDTAFQF-----------------------------------PNGIAVRHMNDGRPYQLIVAETPTKKLWS 202 (314)
T ss_dssp --------EEEEEESS-----------------------------------EEEEEEEECTTSCEEEEEEEETTTTEEEE
T ss_pred --------EeccCCCC-----------------------------------cceEEEecccCCCCCEEEEEECCCCeEEE
Confidence 00001111 2334444 555444 44466789999
Q ss_pred EEcC-CCeeee--EEeecc-ce-eceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccce
Q psy988 277 YDLR-DLNLSC--KYKGYV-NV-SSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVV 351 (408)
Q Consensus 277 ~d~~-~~~~~~--~~~~~~-~~-~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 351 (408)
||.. +++... .+.... .. ..+..++++++|+++++...++.|.+|+..++ +.+..+..+...+
T Consensus 203 ~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g------------~~~~~~~~~~~~~ 270 (314)
T 1pjx_A 203 YDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGG------------QPKMRIRCPFEKP 270 (314)
T ss_dssp EEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCB------------SCSEEEECSSSCE
T ss_pred EECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCC------------cEeEEEeCCCCCc
Confidence 9986 444211 111111 11 24567999999998888777889999998754 2334444555778
Q ss_pred EEEEecCCchhhhhccCCCCCCCccc-EEEEEecCCeEEEEeCCC
Q psy988 352 TCAVFAPCPELIIAQMEPDKSESTGY-VLVSADFNGVIRVFLNKT 395 (408)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~~~dg~v~iw~~~~ 395 (408)
.+++|+| +++ ++++...++.|..|++..
T Consensus 271 ~~i~~~~----------------dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 271 SNLHFKP----------------QTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEEECT----------------TSSEEEEEETTTTEEEEEECSS
T ss_pred eeEEECC----------------CCCEEEEEeCCCCeEEEEeCCC
Confidence 9999999 888 555556678999999875
No 205
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.67 E-value=1.3e-12 Score=108.29 Aligned_cols=259 Identities=9% Similarity=-0.032 Sum_probs=169.2
Q ss_pred CceEEEEeccCCeeEeEE-E-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCC
Q psy988 2 DKTVRLWHISRKECLCCF-Q-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENG 79 (408)
Q Consensus 2 Dg~i~vwd~~~~~~~~~~-~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 79 (408)
++.|.+||.. ++..... . +...+.++++++ ++.++++...++.|..|+.. ++... ..+......+..+++.++|
T Consensus 35 ~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~-~~~~~~~~~~~~i~~~~~g 110 (299)
T 2z2n_A 35 ANMISCINLD-GKITEYPLPTPDAKVMCLTISS-DGEVWFTENAANKIGRITKK-GIIKE-YTLPNPDSAPYGITEGPNG 110 (299)
T ss_dssp TTEEEEECTT-CCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEE-EECSSTTCCEEEEEECTTS
T ss_pred CCcEEEEcCC-CCeEEecCCcccCceeeEEECC-CCCEEEeCCCCCeEEEECCC-CcEEE-EeCCCcCCCceeeEECCCC
Confidence 4678888887 5543322 1 457799999999 88888877768899999986 43322 2223345578999999999
Q ss_pred CEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCcc
Q psy988 80 KFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV 159 (408)
Q Consensus 80 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 159 (408)
.++++...++.|..||. +++... ... ......+..+++.+++...++...++.|..||. +++... +....
T Consensus 111 ~l~v~~~~~~~i~~~d~-~g~~~~-~~~------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~ 180 (299)
T 2z2n_A 111 DIWFTEMNGNRIGRITD-DGKIRE-YEL------PNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITE-FKIPT 180 (299)
T ss_dssp CEEEEETTTTEEEEECT-TCCEEE-EEC------SSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEE-EECSS
T ss_pred CEEEEecCCceEEEECC-CCCEEE-ecC------CCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEE-eeCCC
Confidence 88887777889999998 433221 111 112346889999999877666666789999998 655433 21112
Q ss_pred ccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCC
Q psy988 160 NVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKS 239 (408)
Q Consensus 160 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 239 (408)
....+..++++++|+.+++...++.|..||. ++.... +.
T Consensus 181 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-----------------------~~----------------- 219 (299)
T 2z2n_A 181 PASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE-----------------------FK----------------- 219 (299)
T ss_dssp TTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-----------------------EE-----------------
T ss_pred CCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE-----------------------EE-----------------
Confidence 2234667899999987666666788999987 321100 00
Q ss_pred CCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEE
Q psy988 240 ESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIY 319 (408)
Q Consensus 240 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 319 (408)
.......+.+++++++|+.+++...++.|..||. +++. ..+........+.++++ ++|++.++.. .+.+.
T Consensus 220 ------~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~-~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~ 289 (299)
T 2z2n_A 220 ------IPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNII-EEYPIQIKSAEPHGICF-DGETIWFAME-CDKIG 289 (299)
T ss_dssp ------CSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEE-EEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEE
T ss_pred ------CCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCce-EEEeCCCCCCccceEEe-cCCCEEEEec-CCcEE
Confidence 0012234556667777776666667889999998 4543 33332222346778889 8888777765 56677
Q ss_pred Eeeccc
Q psy988 320 IWKTHH 325 (408)
Q Consensus 320 iw~~~~ 325 (408)
.++..+
T Consensus 290 ~~~~~~ 295 (299)
T 2z2n_A 290 KLTLIK 295 (299)
T ss_dssp EEEEC-
T ss_pred EEEcCc
Confidence 777655
No 206
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.67 E-value=3.8e-14 Score=119.66 Aligned_cols=270 Identities=11% Similarity=0.079 Sum_probs=164.3
Q ss_pred CceEEEEEcCCCCCEEEEEeC--CCcEEEEecCCCCceeee----eecCCceeeEEEEEecCCCEEEEEec-----CCEE
Q psy988 23 DFVTAICFHPRDDRYFLSGSL--DGKLRLWNIPDKKVAVWN----EVEGQTKLITAANFCENGKFAVVGSY-----DGRC 91 (408)
Q Consensus 23 ~~v~~~~~sp~~~~~l~t~~~--dg~i~iw~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i 91 (408)
..+..++++| +++++++... ++.++||.+.+++...+. ....+-..+..++++++|+++++-.. ++.|
T Consensus 17 ~~p~~va~~~-~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTP-DGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECT-TSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECC-CCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 7899999999 8998888642 343666666544432111 11234567999999999886665544 5799
Q ss_pred EEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEe-e---CCCeEEEEEccCcccceeecCccccccceEE
Q psy988 92 IFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVT-S---NDSRIRLYDLRDLNLSCKYKGYVNVSSQIKA 167 (408)
Q Consensus 92 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 167 (408)
.+||+.+++....+..... ...+...+..+++++++..++.+ . .++.|.+||+.+++....+..+.....- ..
T Consensus 96 ~~~d~~tg~~~~~~~~~~~--~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~-~~ 172 (343)
T 2qe8_A 96 VAWDTLNNQLSRVIYLPPP--ITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPE-DI 172 (343)
T ss_dssp EEEETTTTEEEEEEECCTT--TSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCC-SC
T ss_pred EEEECCCCeEEEEEECChh--hcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccc-cc
Confidence 9999998875554433211 11223457889999876666555 3 5789999999988766555442211100 13
Q ss_pred EEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeec
Q psy988 168 SFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLN 247 (408)
Q Consensus 168 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (408)
.+.++|..+.+.+.++.+..|.. .+..++
T Consensus 173 ~~~~~g~~~~~~~~~g~~~~~~~--------------------------~~~gia------------------------- 201 (343)
T 2qe8_A 173 DLVIDGVPVQIGQPDGTVIRPHL--------------------------GVNGIV------------------------- 201 (343)
T ss_dssp CCEETTEECBEECTTSCEECCCC--------------------------CEEEEE-------------------------
T ss_pred ceeECCEEEEeccCCCceeceec--------------------------ccceeE-------------------------
Confidence 45567766666667776655532 123344
Q ss_pred CCCceeeeeccCCCCCeEEEecCCC-eEEEEEcC---CCe-----eee--EEeeccceeceeEEEEcCCCCEEEEecCCc
Q psy988 248 ATGRKISGIEPMPGEDKILVTSNDS-RIRLYDLR---DLN-----LSC--KYKGYVNVSSQIKASFSHDGKYIVSGSENQ 316 (408)
Q Consensus 248 ~~~~~i~~~~~~~~~~~l~~~~~d~-~i~i~d~~---~~~-----~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 316 (408)
++|+++.|+++..++ .+..++.. .+. ... ...++.. ....++++++|+++++...++
T Consensus 202 ----------~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g--~pdgia~d~~G~l~va~~~~~ 269 (343)
T 2qe8_A 202 ----------LDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKP--ICDGISIDKDHNIYVGDLAHS 269 (343)
T ss_dssp ----------ECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECC--SCSCEEECTTCCEEEEEGGGT
T ss_pred ----------eccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCC--CCceEEECCCCCEEEEccCCC
Confidence 455555555554443 55555532 111 000 1111111 344689999999999988899
Q ss_pred eEEEeeccccCccccccccCccccceeeee--eccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeE
Q psy988 317 CIYIWKTHHDYAKFSSVRRDRNDFWEGIKA--HNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVI 388 (408)
Q Consensus 317 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v 388 (408)
.|.+|+..++ +. ..+.. +.....+++|.+ +++++++.+..+.+
T Consensus 270 ~V~~~d~~~G------------~~-~~~~~~~~~~~p~~va~~~----------------~g~l~v~~~~~~~~ 314 (343)
T 2qe8_A 270 AIGVITSADR------------AY-KLLVTDEKLSWTDSFNFGS----------------DGYLYFDCNQLHHS 314 (343)
T ss_dssp EEEEEETTTT------------EE-EEEEECGGGSCEEEEEECT----------------TSCEEEEECCGGGS
T ss_pred eEEEEECCCC------------CE-EEEEECCceecCCeeEECC----------------CCcEEEEeCccccc
Confidence 9999998433 11 11111 234578999999 77777777654444
No 207
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.66 E-value=2.5e-13 Score=113.43 Aligned_cols=251 Identities=10% Similarity=0.114 Sum_probs=160.2
Q ss_pred eCCceEEEEEcCCCCCEEEE-------EeCCCcEEEEecCCCCceeeee--ecCCceeeEEEEEecC-CCEEEEEecCCE
Q psy988 21 HIDFVTAICFHPRDDRYFLS-------GSLDGKLRLWNIPDKKVAVWNE--VEGQTKLITAANFCEN-GKFAVVGSYDGR 90 (408)
Q Consensus 21 h~~~v~~~~~sp~~~~~l~t-------~~~dg~i~iw~~~~~~~~~~~~--~~~~~~~v~~~~~~~~-~~~l~~~~~dg~ 90 (408)
.-....+++|++ ++.++++ +..++.|.+|+..+++...... ..++...+..++++++ |+++++ +..+.
T Consensus 16 ~~~~~~~~~~~~-~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~-~~~~~ 93 (314)
T 1pjx_A 16 DIPGAEGPVFDK-NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVA-DMRLG 93 (314)
T ss_dssp CCTTCEEEEECT-TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEE-ETTTE
T ss_pred cCCCccCceECC-CCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEE-ECCCC
Confidence 445678999998 8888887 5778999999988877643211 0124567899999999 664444 44557
Q ss_pred EEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCC---------------CeEEEEEccCcccceee
Q psy988 91 CIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSND---------------SRIRLYDLRDLNLSCKY 155 (408)
Q Consensus 91 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------------g~i~i~d~~~~~~~~~~ 155 (408)
|.+||.+ ++... .. ... ........+.++++.++++.+++...+ +.|..||.. ++.....
T Consensus 94 l~~~d~~-g~~~~-~~-~~~-~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~ 168 (314)
T 1pjx_A 94 LLVVQTD-GTFEE-IA-KKD-SEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD 168 (314)
T ss_dssp EEEEETT-SCEEE-CC-SBC-TTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE
T ss_pred EEEEeCC-CCEEE-EE-ecc-CCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec
Confidence 9999987 44321 10 110 011122458899999999777666544 567777765 4433222
Q ss_pred cCccccccceEEEEe----cCCCEEEEe-ecCceEEEeeecc-ceeeeeecccCCCccccccccccceEEEEEEeCCcce
Q psy988 156 KGYVNVSSQIKASFS----HDGKYIVSG-SENQCIYIWKTHH-DYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPEL 229 (408)
Q Consensus 156 ~~~~~~~~~~~~~~~----~~~~~l~~~-~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 229 (408)
. . ......++++ ++++.++.+ ..++.|.+||... +..... .....+.
T Consensus 169 ~-~--~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~-------~~~~~~~----------------- 221 (314)
T 1pjx_A 169 T-A--FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENK-------KVWGHIP----------------- 221 (314)
T ss_dssp E-E--ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEE-------EEEEECC-----------------
T ss_pred c-C--CCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccc-------eEEEECC-----------------
Confidence 1 1 1224568899 999766655 4578999999752 110000 0000000
Q ss_pred eeeecCCCCCCCceeeecCCC-ceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCE
Q psy988 230 IIAQMEPDKSESTGYVLNATG-RKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKY 308 (408)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 308 (408)
.+. ..+..++++++|+.+++...++.|.+||..+++....+..+. ..+.+++|+|+|+.
T Consensus 222 ------------------~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~--~~~~~i~~~~dg~~ 281 (314)
T 1pjx_A 222 ------------------GTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPF--EKPSNLHFKPQTKT 281 (314)
T ss_dssp ------------------CCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSS--SCEEEEEECTTSSE
T ss_pred ------------------CCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCC--CCceeEEECCCCCE
Confidence 111 334566777777777777778899999998777766665443 36788999999995
Q ss_pred EE-EecCCceEEEeeccc
Q psy988 309 IV-SGSENQCIYIWKTHH 325 (408)
Q Consensus 309 l~-~~~~dg~i~iw~~~~ 325 (408)
|+ +...++.|..|++..
T Consensus 282 l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 282 IFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEEETTTTEEEEEECSS
T ss_pred EEEEeCCCCeEEEEeCCC
Confidence 54 555678999999865
No 208
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.66 E-value=8.6e-14 Score=129.97 Aligned_cols=248 Identities=10% Similarity=0.010 Sum_probs=154.3
Q ss_pred eCCceEEEEEcCCCCCEEEEEeCC-----CcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCE-----
Q psy988 21 HIDFVTAICFHPRDDRYFLSGSLD-----GKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGR----- 90 (408)
Q Consensus 21 h~~~v~~~~~sp~~~~~l~t~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~----- 90 (408)
|...+..++||| ||++||.++.+ ..|++||+.+++... ...+...+..++|+|| +.|+.++.++.
T Consensus 161 ~~~~~~~~~~SP-DG~~la~~~~~~G~e~~~i~v~dl~tg~~~~---~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~ 235 (741)
T 1yr2_A 161 GATALDAWAASD-DGRLLAYSVQDGGSDWRTVKFVGVADGKPLA---DELKWVKFSGLAWLGN-DALLYSRFAEPKEGQA 235 (741)
T ss_dssp --EEEEEEEECT-TSSEEEEEEEETTCSEEEEEEEETTTCCEEE---EEEEEEESCCCEESTT-SEEEEEECCCC-----
T ss_pred CCEEEEeEEECC-CCCEEEEEEcCCCCceEEEEEEECCCCCCCC---ccCCCceeccEEEECC-CEEEEEEecCcccccc
Confidence 334688999999 99999887654 359999999998653 1112223467899999 99988877654
Q ss_pred ---------EEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCC-----CeEEEEEccCc--cccee
Q psy988 91 ---------CIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSND-----SRIRLYDLRDL--NLSCK 154 (408)
Q Consensus 91 ---------i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~--~~~~~ 154 (408)
|.+|++.+........... ..+...+..+.|+|||++|+..+.+ ..|++||+.++ +....
T Consensus 236 ~~~~~~~~~v~~~~lgt~~~~~~lv~~~----~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~ 311 (741)
T 1yr2_A 236 FQALNYNQTVWLHRLGTPQSADQPVFAT----PELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTA 311 (741)
T ss_dssp ---CCCCCEEEEEETTSCGGGCEEEECC----TTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEE
T ss_pred cccCCCCCEEEEEECCCCchhCEEEecc----CCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEE
Confidence 8899987665322221111 1122357889999999999887654 38999999876 31334
Q ss_pred ecCccccccceEEEEecCCCEEEEeecC----ceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCccee
Q psy988 155 YKGYVNVSSQIKASFSHDGKYIVSGSEN----QCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELI 230 (408)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 230 (408)
+..+... .... ++|+|+.|+..+.+ +.|.+||+.++.... ...+..+...+..+.+.
T Consensus 312 l~~~~~~--~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~----------~~l~~~~~~~l~~~~~~------ 372 (741)
T 1yr2_A 312 LIPDLKA--QWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRF----------DTVVPESKDNLESVGIA------ 372 (741)
T ss_dssp EECSSSS--CEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEE----------EEEECCCSSEEEEEEEE------
T ss_pred ecCCCCc--eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCcccc----------EEEecCCCCeEEEEEEE------
Confidence 4333322 2223 45889888877653 458888876421000 01111122223333333
Q ss_pred eeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcC-CCeeeeEEeeccceeceeEEEEcCCCCEE
Q psy988 231 IAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLR-DLNLSCKYKGYVNVSSQIKASFSHDGKYI 309 (408)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 309 (408)
++..+++...|+..+||.+. +++....+..+ ....+..+.++|+++.|
T Consensus 373 ------------------------------~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~-~~~~v~~~~~s~d~~~l 421 (741)
T 1yr2_A 373 ------------------------------GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLP-GIGSASGLSGRPGDRHA 421 (741)
T ss_dssp ------------------------------BTEEEEEEEETTEEEEEEEETTSCEEEECBCS-SSCEEEEEECCBTCSCE
T ss_pred ------------------------------CCEEEEEEEECCEEEEEEEeCCCCceeeccCC-CCeEEEEeecCCCCCEE
Confidence 23446667778877776554 35555554432 23357788999999877
Q ss_pred E----EecCCceEEEeeccccC
Q psy988 310 V----SGSENQCIYIWKTHHDY 327 (408)
Q Consensus 310 ~----~~~~dg~i~iw~~~~~~ 327 (408)
+ +....+.|++||+.++.
T Consensus 422 ~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 422 YLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEEEEETTEEEEEEEEETTTTE
T ss_pred EEEEcCCCCCCEEEEEECCCCc
Confidence 6 33446899999997753
No 209
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.65 E-value=8e-13 Score=113.88 Aligned_cols=256 Identities=13% Similarity=0.140 Sum_probs=163.0
Q ss_pred CceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCC--EEEEEeccCCe
Q psy988 23 DFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDG--RCIFYTTDQLK 100 (408)
Q Consensus 23 ~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iw~~~~~~ 100 (408)
.....|+|+| +++++++...++.|++||.+++.... ..... .... ++|+++++.|+++..++ .|.+++.....
T Consensus 131 ~~P~~la~d~-~g~lyv~d~~~~~I~~id~~~g~~~~--~~~~~-~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~ 205 (409)
T 3hrp_A 131 KYMWGIAAVG-NNTVLAYQRDDPRVRLISVDDNKVTT--VHPGF-KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGW 205 (409)
T ss_dssp CCEEEEEECS-TTEEEEEETTTTEEEEEETTTTEEEE--EEETC-CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTT
T ss_pred CCceEEEEeC-CCCEEEEecCCCcEEEEECCCCEEEE--eeccC-CCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCc
Confidence 4678999999 88888887778999999998877653 22222 2233 89999999999888766 78888887654
Q ss_pred eeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCccccee----ecCccccccce-EEEEecC-CC
Q psy988 101 YHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCK----YKGYVNVSSQI-KASFSHD-GK 174 (408)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~----~~~~~~~~~~~-~~~~~~~-~~ 174 (408)
...... ... ......+.+++++|++..|+++..++.|+.||..++..... ..+... .... .++|+|+ +.
T Consensus 206 ~~~~~g--~~~--~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~-~~P~~~ia~~p~~g~ 280 (409)
T 3hrp_A 206 APTRIG--QLG--STFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLG-TNPGPYLIYYFVDSN 280 (409)
T ss_dssp CEEEEE--ECC--TTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCC-CSSCCEEEEETTTTE
T ss_pred eeEEee--ecc--chhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCC-CCccccEEEeCCCCE
Confidence 322221 100 11234678899999666777777788999999987653222 111111 1123 7999995 54
Q ss_pred EEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceee
Q psy988 175 YIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKIS 254 (408)
Q Consensus 175 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 254 (408)
.+++-..++.|+.|+....... +.++.. ..+ ..........-..+.
T Consensus 281 lyv~d~~~~~I~~~~~~g~~~~--------------~~g~~~--------~~g------------~~dg~~~~~~~~~P~ 326 (409)
T 3hrp_A 281 FYMSDQNLSSVYKITPDGECEW--------------FCGSAT--------QKT------------VQDGLREEALFAQPN 326 (409)
T ss_dssp EEEEETTTTEEEEECTTCCEEE--------------EEECTT--------CCS------------CBCEEGGGCBCSSEE
T ss_pred EEEEeCCCCEEEEEecCCCEEE--------------EEeCCC--------CCC------------cCCCcccccEeCCCe
Confidence 4555556788998886432100 000000 000 000000001123467
Q ss_pred eeccCCCCCeEEEec-CCCeEEEEEcCCCeeeeEEeecc-------------ceeceeEEEEcCCCCEEEEecCCceEEE
Q psy988 255 GIEPMPGEDKILVTS-NDSRIRLYDLRDLNLSCKYKGYV-------------NVSSQIKASFSHDGKYIVSGSENQCIYI 320 (408)
Q Consensus 255 ~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~-------------~~~~v~~~~~s~~~~~l~~~~~dg~i~i 320 (408)
.++++|+|+++++-. .++.|+.||+.+++.. .+.++. .......++++++|.++++-..++.|+.
T Consensus 327 gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~-~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~ 405 (409)
T 3hrp_A 327 GMTVDEDGNFYIVDGFKGYCLRKLDILDGYVS-TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRK 405 (409)
T ss_dssp EEEECTTCCEEEEETTTTCEEEEEETTTTEEE-EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEE
T ss_pred EEEEeCCCCEEEEeCCCCCEEEEEECCCCEEE-EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEE
Confidence 888999998777777 8899999998877643 333320 0134678999999888888888888888
Q ss_pred eec
Q psy988 321 WKT 323 (408)
Q Consensus 321 w~~ 323 (408)
+++
T Consensus 406 i~~ 408 (409)
T 3hrp_A 406 YAV 408 (409)
T ss_dssp EEE
T ss_pred EEe
Confidence 765
No 210
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.63 E-value=4.9e-12 Score=104.77 Aligned_cols=257 Identities=11% Similarity=-0.035 Sum_probs=165.8
Q ss_pred CceEEEEeccCCeeEeEE-E-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCC
Q psy988 2 DKTVRLWHISRKECLCCF-Q-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENG 79 (408)
Q Consensus 2 Dg~i~vwd~~~~~~~~~~-~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 79 (408)
++.|.+||.. ++..... . +...+.++++.+ +++++++...++.|..||.. ++... ..+......+..+++.++|
T Consensus 40 ~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~v~~~d~~-g~~~~-~~~~~~~~~~~~i~~~~~g 115 (300)
T 2qc5_A 40 ANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSS-LGDIWFTENGANKIGKLSKK-GGFTE-YPLPQPDSGPYGITEGLNG 115 (300)
T ss_dssp TTEEEEECTT-SCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEE-EECSSTTCCEEEEEECSTT
T ss_pred CCeEEEECCC-CceEEEECCCCCCcceeEEECC-CCCEEEEecCCCeEEEECCC-CCeEE-ecCCCCCCCCccceECCCC
Confidence 4678888877 5544321 1 346799999999 88877777667889999987 55432 2333344678999999999
Q ss_pred CEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCcc
Q psy988 80 KFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV 159 (408)
Q Consensus 80 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 159 (408)
+++++...++.|..++.+ ++.. .... ......+.++++.++++..++...++.|..+|. +++... +....
T Consensus 116 ~l~v~~~~~~~i~~~~~~-g~~~-~~~~------~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~ 185 (300)
T 2qc5_A 116 DIWFTQLNGDRIGKLTAD-GTIY-EYDL------PNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEE-YPLPT 185 (300)
T ss_dssp CEEEEETTTTEEEEECTT-SCEE-EEEC------SSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSS
T ss_pred CEEEEccCCCeEEEECCC-CCEE-EccC------CCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEE-eeCCC
Confidence 887777668899999987 4332 1111 112346889999999985555555788999998 554432 32222
Q ss_pred ccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCC
Q psy988 160 NVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKS 239 (408)
Q Consensus 160 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 239 (408)
....+..++++++|+..++....+.|..||.. +..... ...
T Consensus 186 ~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~~~~~-----------~~~--------------------------- 226 (300)
T 2qc5_A 186 NAAAPVGITSGNDGALWFVEIMGNKIGRITTT-GEISEY-----------DIP--------------------------- 226 (300)
T ss_dssp TTCCEEEEEECTTSSEEEEETTTTEEEEECTT-CCEEEE-----------ECS---------------------------
T ss_pred CCCCcceEEECCCCCEEEEccCCCEEEEEcCC-CcEEEE-----------ECC---------------------------
Confidence 22346788999999766666666789988862 110000 000
Q ss_pred CCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEE
Q psy988 240 ESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIY 319 (408)
Q Consensus 240 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 319 (408)
.....+.+++++++|+.+++...++.|..||. +++.. .+........+.+++++++|++.++.. . .|.
T Consensus 227 --------~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~ 294 (300)
T 2qc5_A 227 --------TPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQTENAEPHGITFGKDGSVWFALK-C-KIG 294 (300)
T ss_dssp --------STTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECCSTTCCCCCEEECTTSCEEEECS-S-EEE
T ss_pred --------CCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECCccCCccceeEeCCCCCEEEEcc-C-ceE
Confidence 11223456666777776666666789999998 44433 332222233567889999998776655 4 666
Q ss_pred Eeec
Q psy988 320 IWKT 323 (408)
Q Consensus 320 iw~~ 323 (408)
.++.
T Consensus 295 ~~~p 298 (300)
T 2qc5_A 295 KLNL 298 (300)
T ss_dssp EEEE
T ss_pred EeCC
Confidence 6664
No 211
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.62 E-value=2.7e-12 Score=106.04 Aligned_cols=237 Identities=11% Similarity=0.026 Sum_probs=149.4
Q ss_pred eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCe
Q psy988 21 HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLK 100 (408)
Q Consensus 21 h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 100 (408)
+..--.+..|+|+++.++++...++.|..||..++.... + .....+.+++++++|+++++ . ++.|.+||.++++
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~---~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~ 84 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR---V-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQS 84 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE---E-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTE
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE---E-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCc
Confidence 334456889999556667777778999999998876532 2 23456899999999995554 3 6789999998776
Q ss_pred eeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeC---------CCeEEEEEccC-cccceeecCccccccceEEEEe
Q psy988 101 YHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSN---------DSRIRLYDLRD-LNLSCKYKGYVNVSSQIKASFS 170 (408)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~ 170 (408)
........ .......+..++++|+|+.+++... ...-.+|.+.. ++... +.. .......++|+
T Consensus 85 ~~~~~~~~----~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~~~--~~~~pngi~~s 157 (297)
T 3g4e_A 85 AVVLATVD----NDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK-YFD--QVDISNGLDWS 157 (297)
T ss_dssp EEEEEECC----TTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE-EEE--EESBEEEEEEC
T ss_pred EEEEEecC----CCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEE-Eee--ccccccceEEc
Confidence 43222111 0111245789999999986655422 12334554442 23222 211 12235679999
Q ss_pred cCCCEEEEe-ecCceEEEeeec--cceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeec
Q psy988 171 HDGKYIVSG-SENQCIYIWKTH--HDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLN 247 (408)
Q Consensus 171 ~~~~~l~~~-~~dg~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (408)
|+++.|+.+ +.++.|..|++. ++..... ..+..+ .
T Consensus 158 pdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~-------~~~~~~-----------------------------------~ 195 (297)
T 3g4e_A 158 LDHKIFYYIDSLSYSVDAFDYDLQTGQISNR-------RSVYKL-----------------------------------E 195 (297)
T ss_dssp TTSCEEEEEEGGGTEEEEEEECTTTCCEEEE-------EEEEEC-----------------------------------C
T ss_pred CCCCEEEEecCCCCcEEEEeccCCCCcccCc-------EEEEEC-----------------------------------C
Confidence 999877554 457889999873 2110000 000000 0
Q ss_pred CCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEc-CCCCEEEEecC
Q psy988 248 ATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFS-HDGKYIVSGSE 314 (408)
Q Consensus 248 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~ 314 (408)
.....+..++++++|++.++...++.|.+||..+++.+..+..+.. .+++++|. |+++.|++.+.
T Consensus 196 ~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~--~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 196 KEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVD--KTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp GGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSS--BEEEEEEESGGGCEEEEEEB
T ss_pred CCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCC--CceEEEEeCCCCCEEEEEcC
Confidence 1123455667777777677777788999999998998888876533 67899998 88887765543
No 212
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.61 E-value=3.5e-14 Score=119.07 Aligned_cols=281 Identities=8% Similarity=-0.024 Sum_probs=167.5
Q ss_pred eEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEe----------CCCcEEEEecCCCCceeeeeecCC-----c
Q psy988 4 TVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGS----------LDGKLRLWNIPDKKVAVWNEVEGQ-----T 67 (408)
Q Consensus 4 ~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~----------~dg~i~iw~~~~~~~~~~~~~~~~-----~ 67 (408)
+|.+.|..+++.+..+. -..+ .+.++| |+++++++. .++.|.+||..+++......+.+. .
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~sp-Dg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g 123 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGH-SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVG 123 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECT-TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBS
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECC-CCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccC
Confidence 78899999999999997 3344 799999 888888876 368899999999987732222210 1
Q ss_pred eeeEEEEEecCCCEEEEEec--CCEEEE--EeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCe-EEEeeCCCeEE
Q psy988 68 KLITAANFCENGKFAVVGSY--DGRCIF--YTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDK-ILVTSNDSRIR 142 (408)
Q Consensus 68 ~~v~~~~~~~~~~~l~~~~~--dg~i~i--w~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~ 142 (408)
.....+.++|||++++++.. ...+.+ +|..+ ...+... +. ..+.|+++. +++.+.||.+.
T Consensus 124 ~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~---------~~---~~~~p~g~~~~~~~~~dg~~~ 188 (368)
T 1mda_H 124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA---------SC---FHIHPGAAATHYLGSCPASLA 188 (368)
T ss_dssp CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS---------SC---CCCEEEETTEEECCCCTTSCE
T ss_pred CCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC---------Cc---eEEccCCCeEEEEEcCCCCEE
Confidence 23567899999999999875 467888 88877 2222110 01 223344443 34456788888
Q ss_pred EEEccC-----cccceeec--CccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCcccccccccc
Q psy988 143 LYDLRD-----LNLSCKYK--GYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHN 215 (408)
Q Consensus 143 i~d~~~-----~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (408)
+.|+++ ++...... ...... .. . .+++..++..+. +.+.+.|......... ..+....
T Consensus 189 ~vd~~~~~~~~~~v~~~~t~~i~vg~~-P~--~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~----------~~~~~~~ 253 (368)
T 1mda_H 189 ASDLAAAPAAAGIVGAQCTGAQNCSSQ-AA--Q-ANYPGMLVWAVA-SSILQGDIPAAGATMK----------AAIDGNE 253 (368)
T ss_dssp EEECCSSCCCCEECCCCSCTTSCBCSC-CE--E-ETTTTEEEECBS-SCCEEEECCSSCCEEE----------CCCCSSC
T ss_pred EEECccccccCCeEEEEeeeeeeCCCC-cc--c-cccCCEEEEEcC-CEEEEEECCCCcceEE----------EEEEecc
Confidence 888876 44321110 011111 11 3 666666666656 8899999854221110 0000000
Q ss_pred ceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecC---------CCeEEEEEcCCCeeee
Q psy988 216 AVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSN---------DSRIRLYDLRDLNLSC 286 (408)
Q Consensus 216 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---------d~~i~i~d~~~~~~~~ 286 (408)
.......+.| .....++++|+++.++++.. ++.+.++|+.+++.+.
T Consensus 254 ~~~~~~~~~p-------------------------~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~ 308 (368)
T 1mda_H 254 SGRKADNFRS-------------------------AGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSG 308 (368)
T ss_dssp THHHHTTEEE-------------------------CSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEE
T ss_pred cccccccccc-------------------------CcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEE
Confidence 0000000000 00011345555555555422 2356699999999888
Q ss_pred EEeeccceeceeEEEEcCCCCE-EEEec-CCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecC
Q psy988 287 KYKGYVNVSSQIKASFSHDGKY-IVSGS-ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAP 358 (408)
Q Consensus 287 ~~~~~~~~~~v~~~~~s~~~~~-l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 358 (408)
.+.... ....++|+|||++ +++.. .++.|.++|+.+. +.+..+..... -..+++.+
T Consensus 309 ~i~vg~---~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~------------kvv~~I~vg~~-P~~i~~~~ 366 (368)
T 1mda_H 309 PISNGH---DSDAIIAAQDGASDNYANSAGTEVLDIYDAASD------------QDQSSVELDKG-PESLSVQN 366 (368)
T ss_dssp CCEEEE---EECEEEECCSSSCEEEEEETTTTEEEEEESSSC------------EEEEECCCCSC-CCEEECCC
T ss_pred EEECCC---CcceEEECCCCCEEEEEccCCCCeEEEEECCCC------------cEEEEEECCCC-CCEEEeec
Confidence 776533 3568999999985 45555 5899999999987 45555543332 34555543
No 213
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.61 E-value=1.4e-12 Score=108.21 Aligned_cols=238 Identities=10% Similarity=0.024 Sum_probs=152.7
Q ss_pred EeEEEeCCceEEEEEcCCCCC-EEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEE
Q psy988 16 LCCFQHIDFVTAICFHPRDDR-YFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFY 94 (408)
Q Consensus 16 ~~~~~h~~~v~~~~~sp~~~~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 94 (408)
..............|+| +++ ++++...++.|..|+. +++.. .+..+...+..++++++|+++++...++.|.+|
T Consensus 38 ~~l~~~~~~~egp~~~~-~g~~l~~~d~~~~~i~~~~~-~g~~~---~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~ 112 (305)
T 3dr2_A 38 LTLYDQATWSEGPAWWE-AQRTLVWSDLVGRRVLGWRE-DGTVD---VLLDATAFTNGNAVDAQQRLVHCEHGRRAITRS 112 (305)
T ss_dssp EEEECCCSSEEEEEEEG-GGTEEEEEETTTTEEEEEET-TSCEE---EEEESCSCEEEEEECTTSCEEEEETTTTEEEEE
T ss_pred EEEecCCcCccCCeEeC-CCCEEEEEECCCCEEEEEeC-CCCEE---EEeCCCCccceeeECCCCCEEEEECCCCEEEEE
Confidence 33344666788999999 777 6677777899999998 44433 344455678999999999966665566899999
Q ss_pred eccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEE----eeC-------------CCeEEEEEccCcccceeecC
Q psy988 95 TTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILV----TSN-------------DSRIRLYDLRDLNLSCKYKG 157 (408)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~----~~~-------------dg~i~i~d~~~~~~~~~~~~ 157 (408)
+.+ ++...... .... .....+..+++.|+|+..++ +.. .+.|..+|..+++.....
T Consensus 113 ~~~-g~~~~~~~--~~~~--~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-- 185 (305)
T 3dr2_A 113 DAD-GQAHLLVG--RYAG--KRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-- 185 (305)
T ss_dssp CTT-SCEEEEEC--EETT--EECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--
T ss_pred CCC-CCEEEEEe--ccCC--CccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--
Confidence 986 33221111 1111 11235678999999987775 332 256788887666654332
Q ss_pred ccccccceEEEEecCCCEEEEeecC------ceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceee
Q psy988 158 YVNVSSQIKASFSHDGKYIVSGSEN------QCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELII 231 (408)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 231 (408)
.......++|+|+++.|+.+... +.|+.|++..+. . .. .. .+.
T Consensus 186 --~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l-~~----------------~~----~~~------- 234 (305)
T 3dr2_A 186 --DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-L-HD----------------RR----HFA------- 234 (305)
T ss_dssp --EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-E-EE----------------EE----EEE-------
T ss_pred --cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-c-cC----------------Ce----EEE-------
Confidence 12335678999999988877665 689999875421 0 00 00 000
Q ss_pred eecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEE
Q psy988 232 AQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVS 311 (408)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 311 (408)
......+..++++++|++.+ ++.+ .|.+|+. +++.+..+.... .+.+++|+|+++.|..
T Consensus 235 ---------------~~~~~~pdgi~~d~~G~lwv-~~~~-gv~~~~~-~g~~~~~~~~~~---~~~~~~f~~d~~~L~i 293 (305)
T 3dr2_A 235 ---------------SVPDGLPDGFCVDRGGWLWS-SSGT-GVCVFDS-DGQLLGHIPTPG---TASNCTFDQAQQRLFI 293 (305)
T ss_dssp ---------------CCSSSCCCSEEECTTSCEEE-CCSS-EEEEECT-TSCEEEEEECSS---CCCEEEECTTSCEEEE
T ss_pred ---------------ECCCCCCCeEEECCCCCEEE-ecCC-cEEEECC-CCCEEEEEECCC---ceeEEEEeCCCCEEEE
Confidence 00112344567778888444 4444 4999997 466666666433 4678999999998888
Q ss_pred ecCCce
Q psy988 312 GSENQC 317 (408)
Q Consensus 312 ~~~dg~ 317 (408)
++.++.
T Consensus 294 t~~~~l 299 (305)
T 3dr2_A 294 TGGPCL 299 (305)
T ss_dssp EETTEE
T ss_pred EcCCeE
Confidence 776643
No 214
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.60 E-value=3.8e-12 Score=109.64 Aligned_cols=243 Identities=9% Similarity=0.026 Sum_probs=156.7
Q ss_pred eeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCC--eEEEEE
Q psy988 68 KLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDS--RIRLYD 145 (408)
Q Consensus 68 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~i~d 145 (408)
.....++|+++++++++...++.|++||.++......... ..... ++|+|+++.|+++..++ .|.+++
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~---------~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d 200 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG---------FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYM 200 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET---------CCBCB-CEECTTSSEEEEEBSSTTCEEEEEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc---------CCCCc-eeEecCCCcEEEEecCCCceEEEEE
Confidence 3578999999999777777779999999987765433221 11233 89999999999887755 799999
Q ss_pred ccCcccceeec--CccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEE
Q psy988 146 LRDLNLSCKYK--GYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVF 223 (408)
Q Consensus 146 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 223 (408)
...+.....+. .......+..++++|++..|+++..++.|+.||..+.......... ..+..
T Consensus 201 ~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~--------~~g~~-------- 264 (409)
T 3hrp_A 201 KASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLE--------LSGSL-------- 264 (409)
T ss_dssp GGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECC--------CCSCC--------
T ss_pred cCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEeccc--------ccCCC--------
Confidence 87655433330 0101233567899995556666777889999998643211000000 00000
Q ss_pred eCCcceeeeecCCCCCCCceeeecCCCceee-eeccCCC-CCeEEEecCCCeEEEEEcCCCeeeeEEeecc---------
Q psy988 224 APCPELIIAQMEPDKSESTGYVLNATGRKIS-GIEPMPG-EDKILVTSNDSRIRLYDLRDLNLSCKYKGYV--------- 292 (408)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--------- 292 (408)
...+. .++|+|+ +.++++-..++.|+.|+.... ...+.+..
T Consensus 265 --------------------------~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~ 316 (409)
T 3hrp_A 265 --------------------------GTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGL 316 (409)
T ss_dssp --------------------------CCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEE
T ss_pred --------------------------CCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCc
Confidence 00011 5666664 444555567788999987643 23333321
Q ss_pred ----ceeceeEEEEcCCCCEEEEec-CCceEEEeeccccCccccccccCccccceeeeee---------------ccceE
Q psy988 293 ----NVSSQIKASFSHDGKYIVSGS-ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAH---------------NAVVT 352 (408)
Q Consensus 293 ----~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h---------------~~~v~ 352 (408)
.......++++|+|+++++-. .++.|+.|++.++. +..+.++ -....
T Consensus 317 ~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~-------------v~~~~g~~~~~g~~~g~~~~~~~~~P~ 383 (409)
T 3hrp_A 317 REEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGY-------------VSTVAGQVDVASQIDGTPLEATFNYPY 383 (409)
T ss_dssp GGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTE-------------EEEEEECTTCBSCCCBSTTTCCBSSEE
T ss_pred ccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCE-------------EEEEeCCCCCCCcCCCChhceEeCCce
Confidence 012467899999999888877 88999999976542 2222222 24578
Q ss_pred EEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeC
Q psy988 353 CAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLN 393 (408)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~ 393 (408)
.+++++ +|.++++-..+++|+.+++
T Consensus 384 giavd~----------------~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 384 DICYDG----------------EGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEEECS----------------SSEEEEEESTTCEEEEEEE
T ss_pred EEEEcC----------------CCCEEEEECCCCeEEEEEe
Confidence 899999 8888888888899998875
No 215
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.59 E-value=4.9e-13 Score=123.74 Aligned_cols=244 Identities=10% Similarity=0.082 Sum_probs=149.6
Q ss_pred CCceeeEEEEEecCCCEEEEEe-----cCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCC
Q psy988 65 GQTKLITAANFCENGKFAVVGS-----YDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDS 139 (408)
Q Consensus 65 ~~~~~v~~~~~~~~~~~l~~~~-----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 139 (408)
+|...+..++|||||++||.+. ....|++||+.+++..... ... .....++|+ |++.|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~--------~k~~~~~Ws-Dg~~l~y~~~~~ 195 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKD--------VKFSGISWL-GNEGFFYSSYDK 195 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEE--------EESCCCEEE-TTTEEEEEESSC
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCC--------ceeccEEEe-CCCEEEEEEecC
Confidence 3556788999999999988543 2357999999998754331 111 013567899 999999987764
Q ss_pred -------------eEEEEEccCcccc--eeecCcc-ccccceEEEEecCCCEEEEeec----CceEEEeeeccceeeeee
Q psy988 140 -------------RIRLYDLRDLNLS--CKYKGYV-NVSSQIKASFSHDGKYIVSGSE----NQCIYIWKTHHDYAKFSS 199 (408)
Q Consensus 140 -------------~i~i~d~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~ 199 (408)
.|++|++.+.... ..+.... .......+.++|||++|+.... ...|+++|+.++...
T Consensus 196 ~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~--- 272 (693)
T 3iuj_A 196 PDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAP--- 272 (693)
T ss_dssp CC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCC---
T ss_pred cccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCc---
Confidence 3999999876532 2233322 2233567899999999865543 248899998653211
Q ss_pred cccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecC---CCeEEE
Q psy988 200 VRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSN---DSRIRL 276 (408)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---d~~i~i 276 (408)
...+..+....... +++++..+ ++.... .+.|..
T Consensus 273 --------~~~l~~~~~~~~~~-~~~~g~~l----------------------------------~~~t~~~~~~~~l~~ 309 (693)
T 3iuj_A 273 --------LLTVQGDLDADVSL-VDNKGSTL----------------------------------YLLTNRDAPNRRLVT 309 (693)
T ss_dssp --------CEEEECSSSSCEEE-EEEETTEE----------------------------------EEEECTTCTTCEEEE
T ss_pred --------eEEEeCCCCceEEE-EeccCCEE----------------------------------EEEECCCCCCCEEEE
Confidence 11122222222222 34444333 222222 368999
Q ss_pred EEcCCCee--eeEEeeccceeceeEEEEcCCCCEEEEecC-Cc--eEEEeeccccCccccccccCccccceeee-eeccc
Q psy988 277 YDLRDLNL--SCKYKGYVNVSSQIKASFSHDGKYIVSGSE-NQ--CIYIWKTHHDYAKFSSVRRDRNDFWEGIK-AHNAV 350 (408)
Q Consensus 277 ~d~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~ 350 (408)
+|+.++.. ...+..+.. .+. .|++++++|+.... ++ .|++|++..+ ....+. ...+.
T Consensus 310 ~d~~~~~~~~~~~l~~~~~--~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~-------------~~~~l~~p~~~~ 372 (693)
T 3iuj_A 310 VDAANPGPAHWRDLIPERQ--QVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK-------------RVREVALPGLGS 372 (693)
T ss_dssp EETTSCCGGGCEEEECCCS--SCE--EEEEETTEEEEEEEETTEEEEEEECTTSC-------------EEEEECCSSSSE
T ss_pred EeCCCCCccccEEEecCCC--CEE--EEEEECCEEEEEEEECCeeEEEEEECCCC-------------eeEEeecCCCce
Confidence 99987654 234444433 333 89999998877654 43 6888888753 112222 23455
Q ss_pred eEEEEecCCchhhhhccCCCCCCCcccEEEEEecC----CeEEEEeCCCCC
Q psy988 351 VTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFN----GVIRVFLNKTKP 397 (408)
Q Consensus 351 v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d----g~v~iw~~~~~~ 397 (408)
+..+.++| ++..|+....+ +.|..||+.+++
T Consensus 373 ~~~~~~~~----------------d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 373 VSGFNGKH----------------DDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp EEECCCCT----------------TCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred EEeeecCC----------------CCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 77778888 55555544333 789999987765
No 216
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.58 E-value=1.7e-11 Score=101.26 Aligned_cols=222 Identities=8% Similarity=0.021 Sum_probs=138.2
Q ss_pred CceeeEEEEEecCC-CEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEE
Q psy988 66 QTKLITAANFCENG-KFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLY 144 (408)
Q Consensus 66 ~~~~v~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~ 144 (408)
...-..+..|++++ .++++...++.|..||..+..... .. ....+.+++++++++ ++++. ++.|.+|
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~---------~~~~~~~i~~~~dG~-l~v~~-~~~l~~~ 78 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR-VT---------MDAPVSSVALRQSGG-YVATI-GTKFCAL 78 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE-EE---------CSSCEEEEEEBTTSS-EEEEE-TTEEEEE
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE-Ee---------CCCceEEEEECCCCC-EEEEE-CCeEEEE
Confidence 33445678899964 555666678999999998765421 11 124789999999998 44444 5689999
Q ss_pred EccCcccceeecCc--cccccceEEEEecCCCEEEEeecC---------ceEEEeeeccceeeeeecccCCCcccccccc
Q psy988 145 DLRDLNLSCKYKGY--VNVSSQIKASFSHDGKYIVSGSEN---------QCIYIWKTHHDYAKFSSVRRDRNDFWEGIKA 213 (408)
Q Consensus 145 d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 213 (408)
|..+++........ .....+..++++|+|+++++.... ..-.+|.+...
T Consensus 79 d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-------------------- 138 (297)
T 3g4e_A 79 NWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-------------------- 138 (297)
T ss_dssp ETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT--------------------
T ss_pred ECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC--------------------
Confidence 99877653322211 122346678999999866544321 12233333211
Q ss_pred ccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEE-EecCCCeEEEEEc--CCCeee--eEE
Q psy988 214 HNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKIL-VTSNDSRIRLYDL--RDLNLS--CKY 288 (408)
Q Consensus 214 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~i~i~d~--~~~~~~--~~~ 288 (408)
+.... ..........++|+|+++.++ +.+.++.|.+||+ .++... ..+
T Consensus 139 -------------g~~~~--------------~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~ 191 (297)
T 3g4e_A 139 -------------HHVKK--------------YFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSV 191 (297)
T ss_dssp -------------SCEEE--------------EEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEE
T ss_pred -------------CCEEE--------------EeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEE
Confidence 00000 000112245667777777654 4466789999997 455432 122
Q ss_pred eec-cceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEec-C
Q psy988 289 KGY-VNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFA-P 358 (408)
Q Consensus 289 ~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~ 358 (408)
... ........++++++|++.++....+.|..||..++ +.+..+..+...+++++|. |
T Consensus 192 ~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG------------~~~~~i~~p~~~~t~~~f~g~ 251 (297)
T 3g4e_A 192 YKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTG------------KRLQTVKLPVDKTTSCCFGGK 251 (297)
T ss_dssp EECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTC------------CEEEEEECSSSBEEEEEEESG
T ss_pred EECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCc------------eEEEEEECCCCCceEEEEeCC
Confidence 111 11234568899999998888777889999999866 4566666666789999998 7
No 217
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.55 E-value=3e-12 Score=107.42 Aligned_cols=264 Identities=6% Similarity=-0.109 Sum_probs=163.9
Q ss_pred EEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEee----------CCCeEEEEEccCcccceeecCcc
Q psy988 90 RCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTS----------NDSRIRLYDLRDLNLSCKYKGYV 159 (408)
Q Consensus 90 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~~ 159 (408)
.|.++|..+.+....+.... .+ .+.++|++++++++. .++.|.+||+.+++.+..+....
T Consensus 47 ~vsvID~~t~~v~~~i~vG~--------~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~ 116 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAF--------LS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPD 116 (368)
T ss_dssp EEEEEETTTTEEEEEEEECT--------TC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETT
T ss_pred eEEEEECCCCeEEEEEeCCC--------CC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCC
Confidence 88999999998877665432 23 799999999999986 36889999999999888875321
Q ss_pred c-----cccceEEEEecCCCEEEEeec--CceEEE--eeeccceeeeeecccCCCccccccccccceEEEEEEeCCccee
Q psy988 160 N-----VSSQIKASFSHDGKYIVSGSE--NQCIYI--WKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELI 230 (408)
Q Consensus 160 ~-----~~~~~~~~~~~~~~~l~~~~~--dg~i~i--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 230 (408)
. ......++++|||++++++.. +..+.+ +|..+ .... ... .+......... .-+.++++++.+
T Consensus 117 ~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t-v~~i---~v~--~~~~~~p~g~~--~~~~~~~dg~~~ 188 (368)
T 1mda_H 117 APRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD-DQLT---KSA--SCFHIHPGAAA--THYLGSCPASLA 188 (368)
T ss_dssp SCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE-EEEE---ECS--SCCCCEEEETT--EEECCCCTTSCE
T ss_pred ccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh-ceEE---ECC--CceEEccCCCe--EEEEEcCCCCEE
Confidence 0 012446899999999998864 457888 99876 1111 100 01111111111 123556666665
Q ss_pred eeecCC----CCCCCce--eeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCe--eeeEEeec------c--ce
Q psy988 231 IAQMEP----DKSESTG--YVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLN--LSCKYKGY------V--NV 294 (408)
Q Consensus 231 ~~~~~~----~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~------~--~~ 294 (408)
...... ....... ..+.....+. . ++++..++..+. +.+.+.|..+.. ....+... . ..
T Consensus 189 ~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p 263 (368)
T 1mda_H 189 ASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRS 263 (368)
T ss_dssp EEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEE
T ss_pred EEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEecccccccccccc
Confidence 554433 1100000 0111111222 2 556666666666 899999986532 22222110 0 01
Q ss_pred eceeEEEEcCCCCEEEEecC---------CceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhh
Q psy988 295 SSQIKASFSHDGKYIVSGSE---------NQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIA 365 (408)
Q Consensus 295 ~~v~~~~~s~~~~~l~~~~~---------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 365 (408)
.....++++||++.++++.. ++.+.++|+.+. +.+..+.... ...+++|+|
T Consensus 264 ~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~------------~vv~~i~vg~-~p~gi~~s~------- 323 (368)
T 1mda_H 264 AGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG------------QTSGPISNGH-DSDAIIAAQ------- 323 (368)
T ss_dssp CSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC------------CEEECCEEEE-EECEEEECC-------
T ss_pred CcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCC------------eEEEEEECCC-CcceEEECC-------
Confidence 11122689999998887543 235669999886 4555555333 578999999
Q ss_pred ccCCCCCCCccc-EEEEEe-cCCeEEEEeCCCCCCccccccc
Q psy988 366 QMEPDKSESTGY-VLVSAD-FNGVIRVFLNKTKPKHSSLPVS 405 (408)
Q Consensus 366 ~~~~~~~s~~~~-~l~s~~-~dg~v~iw~~~~~~~~~~~~~s 405 (408)
||+ ++++.. .++.|.++|+.+++....+++.
T Consensus 324 ---------Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg 356 (368)
T 1mda_H 324 ---------DGASDNYANSAGTEVLDIYDAASDQDQSSVELD 356 (368)
T ss_dssp ---------SSSCEEEEEETTTTEEEEEESSSCEEEEECCCC
T ss_pred ---------CCCEEEEEccCCCCeEEEEECCCCcEEEEEECC
Confidence 886 566666 5999999999999988887764
No 218
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.54 E-value=7.6e-13 Score=111.24 Aligned_cols=184 Identities=7% Similarity=0.052 Sum_probs=130.6
Q ss_pred ceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCC---------ceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEE
Q psy988 24 FVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKK---------VAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFY 94 (408)
Q Consensus 24 ~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 94 (408)
.++.+++++ ...++++|+.+ .+.+|+++... ... .....+.. |+.++| ++++|+++ .++.|++|
T Consensus 39 ~~nlLais~-~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~-~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~ 111 (388)
T 1xip_A 39 SLQNLDISN-SKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTF-KWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSL 111 (388)
T ss_dssp CCBCEEEET-TTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCC-SEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEE
T ss_pred cccEEEEcC-CCCEEEEeCCC-EEEEEEhhHhhhhhccccccccc-eEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEE
Confidence 689999999 88899999987 56669875432 221 12223556 999999 89999998 88999999
Q ss_pred eccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCC
Q psy988 95 TTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGK 174 (408)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (408)
|+.+........ .+...+.++.+.+. .+++++.||.|.+||+.++.... ....+.+++|+|+|
T Consensus 112 dv~sl~~~~~~~--------~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~------~~~~Vs~v~WSpkG- 174 (388)
T 1xip_A 112 DLEELSEFRTVT--------SFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ------LAQNVTSFDVTNSQ- 174 (388)
T ss_dssp ESSSTTCEEEEE--------ECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE------EEESEEEEEECSSE-
T ss_pred EchhhhccCccc--------eeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc------ccCCceEEEEcCCc-
Confidence 998876433322 12245777777654 38888999999999999776543 12358899999999
Q ss_pred EEEEeecCceEEEeeecccee--eeeecccCCCccccccccccceEEEEEEeCCcceeeeecC
Q psy988 175 YIVSGSENQCIYIWKTHHDYA--KFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQME 235 (408)
Q Consensus 175 ~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 235 (408)
++.|..||.+++|+...... +....+. ..+..-..|...|.++.|.+++.++++...
T Consensus 175 -~~vg~~dg~i~~~~~~~~~~~~k~~I~~P---p~~~~~~~~~~~V~sI~wl~~~~flv~y~~ 233 (388)
T 1xip_A 175 -LAVLLKDRSFQSFAWRNGEMEKQFEFSLP---SELEELPVEEYSPLSVTILSPQDFLAVFGN 233 (388)
T ss_dssp -EEEEETTSCEEEEEEETTEEEEEEEECCC---HHHHTSCTTTSEEEEEEESSSSEEEEEEEC
T ss_pred -eEEEEcCCcEEEEcCCCccccccceecCC---cccccccCCCeeEEEEEEecCCeEEEEEcC
Confidence 77889999999998876542 2111111 001111136788999999999998876443
No 219
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.54 E-value=7.2e-11 Score=101.13 Aligned_cols=296 Identities=9% Similarity=0.031 Sum_probs=174.9
Q ss_pred CceEEEEeccCCeeEeEEEe----------CCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeE
Q psy988 2 DKTVRLWHISRKECLCCFQH----------IDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLIT 71 (408)
Q Consensus 2 Dg~i~vwd~~~~~~~~~~~h----------~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~ 71 (408)
++.|..+|.++++.+-.+.. ...+.+.-.. ++..++.++.++.|..+|.++++..-...+... ...
T Consensus 62 ~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~--~~~ 137 (376)
T 3q7m_A 62 AGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV--SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGE--ALS 137 (376)
T ss_dssp TSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECSSC--CCS
T ss_pred CCeEEEEEccCCceeeeecCccccccccccCcccccCceE--eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCc--eEc
Confidence 57899999999998877663 2333332222 345678888899999999999986532222221 111
Q ss_pred EEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCccc
Q psy988 72 AANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNL 151 (408)
Q Consensus 72 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 151 (408)
.... .+..++.++.++.+..+|..+++.............. ........ .+..+++++.++.|..+|..+++.
T Consensus 138 ~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~---~~~~~~~~--~~~~v~~g~~~g~l~~~d~~tG~~ 210 (376)
T 3q7m_A 138 RPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSL---RGESAPTT--AFGAAVVGGDNGRVSAVLMEQGQM 210 (376)
T ss_dssp CCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC--------CCCCCCEE--ETTEEEECCTTTEEEEEETTTCCE
T ss_pred CCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceee---cCCCCcEE--ECCEEEEEcCCCEEEEEECCCCcE
Confidence 1112 2457888889999999999988876654432110000 00011111 245788888899999999999987
Q ss_pred ceeecCcccccc-----ceEEEEe--cCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEe
Q psy988 152 SCKYKGYVNVSS-----QIKASFS--HDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFA 224 (408)
Q Consensus 152 ~~~~~~~~~~~~-----~~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 224 (408)
+........... +..+... ..+..+++++.++.+..+|.+++....... ......+..
T Consensus 211 ~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~--------------~~~~~~~~~- 275 (376)
T 3q7m_A 211 IWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRE--------------LGSVNDFIV- 275 (376)
T ss_dssp EEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEEC--------------CCCEEEEEE-
T ss_pred EEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeecc--------------CCCCCCceE-
Confidence 765543211000 0000011 134567788888999999987664432210 000111111
Q ss_pred CCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcC
Q psy988 225 PCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSH 304 (408)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~ 304 (408)
++..+++++.++.+..+|..+++..-........ .......
T Consensus 276 ------------------------------------~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~-~~~~~~~-- 316 (376)
T 3q7m_A 276 ------------------------------------DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHR-LLTSPVL-- 316 (376)
T ss_dssp ------------------------------------ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTS-CCCCCEE--
T ss_pred ------------------------------------ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCC-cccCCEE--
Confidence 2445677788899999999999887665522111 1112222
Q ss_pred CCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEE-EEecCCchhhhhccCCCCCCCcccEEEEEe
Q psy988 305 DGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTC-AVFAPCPELIIAQMEPDKSESTGYVLVSAD 383 (408)
Q Consensus 305 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~ 383 (408)
.+..|++++.+|.++++|..+++ .+.........+.+ ... .+..|..++
T Consensus 317 ~~~~l~v~~~~g~l~~~d~~tG~------------~~~~~~~~~~~~~~~~~~------------------~~~~l~v~~ 366 (376)
T 3q7m_A 317 YNGNLVVGDSEGYLHWINVEDGR------------FVAQQKVDSSGFQTEPVA------------------ADGKLLIQA 366 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCC------------EEEEEECCTTCBCSCCEE------------------ETTEEEEEB
T ss_pred ECCEEEEEeCCCeEEEEECCCCc------------EEEEEecCCCcceeCCEE------------------ECCEEEEEe
Confidence 35688888999999999998873 22222221222221 122 234677788
Q ss_pred cCCeEEEEe
Q psy988 384 FNGVIRVFL 392 (408)
Q Consensus 384 ~dg~v~iw~ 392 (408)
.||.|..|+
T Consensus 367 ~~G~l~~~~ 375 (376)
T 3q7m_A 367 KDGTVYSIT 375 (376)
T ss_dssp TTSCEEEEE
T ss_pred CCCEEEEEe
Confidence 899999987
No 220
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.53 E-value=2.3e-11 Score=101.74 Aligned_cols=230 Identities=11% Similarity=0.034 Sum_probs=142.8
Q ss_pred ceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeE
Q psy988 24 FVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHT 103 (408)
Q Consensus 24 ~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~ 103 (408)
-.....|+|+++.++++...++.|..||..+++... +. ....+.++.|+++|+++++. . ..|.+||..+++...
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~---~~-~~~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~~~~ 123 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV---HA-LPFMGSALAKISDSKQLIAS-D-DGLFLRDTATGVLTL 123 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE---EE-CSSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCCEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE---EE-CCCcceEEEEeCCCeEEEEE-C-CCEEEEECCCCcEEE
Confidence 356789999446666777778999999998876442 22 23568999999999877754 3 459999988766432
Q ss_pred EEEEeeccccccCCCCeEEEeeCCCCCeEEEeeC------CCeEEEEEccCcccceeecCccccccceEEEEecCCCEEE
Q psy988 104 QIHVRSTRGKNATGRKISGIEPMPGEDKILVTSN------DSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIV 177 (408)
Q Consensus 104 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 177 (408)
.. ... .......+.+++++|+++.+++... .+.|..++ +++... +.. .......++|+|+++.++
T Consensus 124 ~~---~~~-~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~--~~~~~~~i~~s~dg~~ly 194 (326)
T 2ghs_A 124 HA---ELE-SDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFA--DISIPNSICFSPDGTTGY 194 (326)
T ss_dssp EE---CSS-TTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEE--EESSEEEEEECTTSCEEE
T ss_pred Ee---eCC-CCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeC--CCcccCCeEEcCCCCEEE
Confidence 11 111 0111236889999999986655432 24555555 444322 211 112345789999998776
Q ss_pred Ee-ecCceEEEeeec--cc-eeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCcee
Q psy988 178 SG-SENQCIYIWKTH--HD-YAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKI 253 (408)
Q Consensus 178 ~~-~~dg~i~i~d~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 253 (408)
.+ ..++.|.+||+. ++ .... ...+..+ ......+
T Consensus 195 v~~~~~~~I~~~d~~~~~Gl~~~~-------~~~~~~~-----------------------------------~~~~~~p 232 (326)
T 2ghs_A 195 FVDTKVNRLMRVPLDARTGLPTGK-------AEVFIDS-----------------------------------TGIKGGM 232 (326)
T ss_dssp EEETTTCEEEEEEBCTTTCCBSSC-------CEEEEEC-----------------------------------TTSSSEE
T ss_pred EEECCCCEEEEEEcccccCCcccC-------ceEEEEC-----------------------------------CCCCCCC
Confidence 55 446789999975 21 1000 0000000 0112234
Q ss_pred eeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEc-CCCCEEEEec
Q psy988 254 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFS-HDGKYIVSGS 313 (408)
Q Consensus 254 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~ 313 (408)
..++++++|.+.++...++.|.+||. +++....+..+.. .+.+++|+ |+++.|++++
T Consensus 233 ~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~--~~~~~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 233 DGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGK--QTTCPAFIGPDASRLLVTS 290 (326)
T ss_dssp EEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCS--BEEEEEEESTTSCEEEEEE
T ss_pred CeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCC--CcEEEEEecCCCCEEEEEe
Confidence 55667777776666666788999998 5666666654432 57899998 8888776544
No 221
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.53 E-value=2.2e-12 Score=119.31 Aligned_cols=246 Identities=13% Similarity=0.159 Sum_probs=148.2
Q ss_pred eCCceEEEEEcCCCCCEEEEE-----eCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCC------
Q psy988 21 HIDFVTAICFHPRDDRYFLSG-----SLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDG------ 89 (408)
Q Consensus 21 h~~~v~~~~~sp~~~~~l~t~-----~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg------ 89 (408)
|...+..++||| ||++||-+ +....|++||+.+++.... .+. ......++|+ ||+.|+.++.+.
T Consensus 127 ~~~~l~~~~~Sp-Dg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~~~--~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~ 201 (693)
T 3iuj_A 127 GTTALDQLSFSR-DGRILAYSLSLAGSDWREIHLMDVESKQPLET-PLK--DVKFSGISWL-GNEGFFYSSYDKPDGSEL 201 (693)
T ss_dssp SCCEEEEEEECT-TSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-EEE--EEESCCCEEE-TTTEEEEEESSCCC----
T ss_pred CcEEEEEEEECC-CCCEEEEEEecCCCceEEEEEEECCCCCCCcc-ccC--CceeccEEEe-CCCEEEEEEecCcccccc
Confidence 445688899999 99988843 3335799999999986531 111 1123578899 999999888774
Q ss_pred -------EEEEEeccCCeeeEEEEEeecccccc-CCCCeEEEeeCCCCCeEEEeeC----CCeEEEEEccCcc-cceeec
Q psy988 90 -------RCIFYTTDQLKYHTQIHVRSTRGKNA-TGRKISGIEPMPGEDKILVTSN----DSRIRLYDLRDLN-LSCKYK 156 (408)
Q Consensus 90 -------~i~iw~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~-~~~~~~ 156 (408)
.|++|++.+........... .. +......+.|+|++++|+.... .+.|+++|+.++. ....+.
T Consensus 202 ~~~~~~~~v~~~~lgt~~~~~~~v~~~----~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~ 277 (693)
T 3iuj_A 202 SARTDQHKVYFHRLGTAQEDDRLVFGA----IPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQ 277 (693)
T ss_dssp ---CCCCEEEEEETTSCGGGCEEEESC----SGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEE
T ss_pred cccCCCcEEEEEECCCCcccceEEEec----CCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEe
Confidence 49999988765322221111 11 2234678899999998866532 3589999998764 233444
Q ss_pred CccccccceEEEEecCCCEEEEeec----CceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeee
Q psy988 157 GYVNVSSQIKASFSHDGKYIVSGSE----NQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIA 232 (408)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 232 (408)
.+... .... ++++|..|+..+. .+.|..+|+.++.. ..++.+..+...+. .|+++
T Consensus 278 ~~~~~--~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~----------~~~~~l~~~~~~~~--~~s~~------ 336 (693)
T 3iuj_A 278 GDLDA--DVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGP----------AHWRDLIPERQQVL--TVHSG------ 336 (693)
T ss_dssp CSSSS--CEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCG----------GGCEEEECCCSSCE--EEEEE------
T ss_pred CCCCc--eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCc----------cccEEEecCCCCEE--EEEEE------
Confidence 33322 2222 6677766655443 25788888764321 00112222222222 44444
Q ss_pred ecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEec-CCC--eEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEE
Q psy988 233 QMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTS-NDS--RIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYI 309 (408)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~--~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 309 (408)
+++|+... .++ .|++||+..+. ...+... ....+..+.++++++.|
T Consensus 337 -----------------------------g~~lv~~~~~~g~~~l~~~d~~g~~-~~~l~~p-~~~~~~~~~~~~d~~~l 385 (693)
T 3iuj_A 337 -----------------------------SGYLFAEYMVDATARVEQFDYEGKR-VREVALP-GLGSVSGFNGKHDDPAL 385 (693)
T ss_dssp -----------------------------TTEEEEEEEETTEEEEEEECTTSCE-EEEECCS-SSSEEEECCCCTTCSCE
T ss_pred -----------------------------CCEEEEEEEECCeeEEEEEECCCCe-eEEeecC-CCceEEeeecCCCCCEE
Confidence 44444443 333 68999987543 3444322 22345677888888877
Q ss_pred EEecCC----ceEEEeeccccC
Q psy988 310 VSGSEN----QCIYIWKTHHDY 327 (408)
Q Consensus 310 ~~~~~d----g~i~iw~~~~~~ 327 (408)
+....+ +.++.||+.++.
T Consensus 386 ~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 386 YFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp EEEEECSSSCCEEEEECTTTCC
T ss_pred EEEecCCCCCCEEEEEECCCCe
Confidence 655443 789999987653
No 222
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.52 E-value=9.3e-11 Score=98.82 Aligned_cols=275 Identities=9% Similarity=0.066 Sum_probs=161.1
Q ss_pred EEEEeccC-----CeeEeEEE--eC-CceEEEEE-----------c--CCCCCEEEE-EeCCCcEEEEecCCC--Cceee
Q psy988 5 VRLWHISR-----KECLCCFQ--HI-DFVTAICF-----------H--PRDDRYFLS-GSLDGKLRLWNIPDK--KVAVW 60 (408)
Q Consensus 5 i~vwd~~~-----~~~~~~~~--h~-~~v~~~~~-----------s--p~~~~~l~t-~~~dg~i~iw~~~~~--~~~~~ 60 (408)
|.+-|++. ++.+..+. +. +....+-| + + ++++|+. +..++.|.++|+.+. +....
T Consensus 45 la~vDvdp~s~ty~~vi~~~~~p~~gde~HH~gwn~css~~~~~~~~~~-~r~~l~v~~l~s~~I~viD~~t~p~~p~~~ 123 (462)
T 2ece_A 45 IAVVDVNPKSETYSKIVHKVELPYINDELHHFGWNACSSALCPNGKPNI-ERRFLIVPGLRSSRIYIIDTKPNPREPKII 123 (462)
T ss_dssp EEEEECCTTSTTTTSEEEEEECSSSCCCBCCCEESCCGGGGSTTCCTTC-CSCEEEEEBTTTCCEEEEECCSCTTSCEEE
T ss_pred EEEEECCCCCCCcceEEEEEECCCCCCcccccchhhhhhhcccccCCCc-cCCEEEEccCCCCeEEEEECCCCCCCceee
Confidence 45566665 66676664 21 23444445 6 6 5666554 556889999999754 22222
Q ss_pred eeec-------CCceeeEEEEEecCCCEEEEEecC------CEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCC
Q psy988 61 NEVE-------GQTKLITAANFCENGKFAVVGSYD------GRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMP 127 (408)
Q Consensus 61 ~~~~-------~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 127 (408)
+.+. ........+...|+| .++++..+ |.|.++|.++.+.......... ....-..+.|+|
T Consensus 124 k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~-----~~~~~Yd~~~~p 197 (462)
T 2ece_A 124 KVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRG-----DQYLAYDFWWNL 197 (462)
T ss_dssp EEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCT-----TCCCCCCEEEET
T ss_pred eeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCC-----CccccceEEECC
Confidence 3331 112245567788999 66666655 7899999999887655432211 111234577899
Q ss_pred CCCeEEEee-------------------CCCeEEEEEccCcccceeecCccccccceEEEE--ecCCCEEEEeec-----
Q psy988 128 GEDKILVTS-------------------NDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASF--SHDGKYIVSGSE----- 181 (408)
Q Consensus 128 ~~~~l~~~~-------------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~----- 181 (408)
+++.+++.. ....|.+||+.+++.+.++...........+.| +|++++++++.+
T Consensus 198 ~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~ 277 (462)
T 2ece_A 198 PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKD 277 (462)
T ss_dssp TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTT
T ss_pred CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccC
Confidence 999888884 368999999998877776655322223444545 999999887764
Q ss_pred -CceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCC
Q psy988 182 -NQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMP 260 (408)
Q Consensus 182 -dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 260 (408)
+++|.+|....+.-.. ...+.+.+ .+... .......-+......+..+.+++
T Consensus 278 Lss~V~v~~~d~g~~~~--------------------~~vIdi~~-~~v~~------~lp~~~~~f~~~~~~pa~I~lS~ 330 (462)
T 2ece_A 278 LSSSIWLWFYEDGKWNA--------------------EKVIEIPA-EPLEG------NLPEILKPFKAVPPLVTDIDISL 330 (462)
T ss_dssp CCEEEEEEEEETTEEEE--------------------EEEEEECC-EECCS------SCCGGGGGGTEECCCCCCEEECT
T ss_pred CCceEEEEEecCCceeE--------------------EEEEeCCC-ccccc------cccccccccccCCCceeEEEECC
Confidence 5688887764321100 00011100 00000 00000000000123467788888
Q ss_pred CCCeEEEec-CCCeEEEEEcCC---CeeeeEEeeccc------------eeceeEEEEcCCCCEEEEec
Q psy988 261 GEDKILVTS-NDSRIRLYDLRD---LNLSCKYKGYVN------------VSSQIKASFSHDGKYIVSGS 313 (408)
Q Consensus 261 ~~~~l~~~~-~d~~i~i~d~~~---~~~~~~~~~~~~------------~~~v~~~~~s~~~~~l~~~~ 313 (408)
||++|+++. ..+.|.+||+.. .+++..+..... ......+.++|||++|+++.
T Consensus 331 DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 331 DDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp TSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 888888764 468999999863 344444433200 01245789999999999887
No 223
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.51 E-value=2.2e-11 Score=102.40 Aligned_cols=152 Identities=10% Similarity=0.085 Sum_probs=114.4
Q ss_pred eEEEEeccCCe-----------eEeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEE
Q psy988 4 TVRLWHISRKE-----------CLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITA 72 (408)
Q Consensus 4 ~i~vwd~~~~~-----------~~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~ 72 (408)
.+++|+++..+ ......+.. |+.++| ++++|+++ .++.|++||+.+.... .....|...+.+
T Consensus 59 ~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f---d~~~L~v~-~~~~l~v~dv~sl~~~--~~~~~~~~~v~~ 131 (388)
T 1xip_A 59 KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF---HGDQVLVS-TRNALYSLDLEELSEF--RTVTSFEKPVFQ 131 (388)
T ss_dssp EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE---ETTEEEEE-ESSEEEEEESSSTTCE--EEEEECSSCEEE
T ss_pred EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE---CCCEEEEE-cCCcEEEEEchhhhcc--Cccceeecceee
Confidence 46678765433 223445777 999999 67888888 8899999999876643 455666777888
Q ss_pred EEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCccc-
Q psy988 73 ANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNL- 151 (408)
Q Consensus 73 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~- 151 (408)
+.+.+. .+++++.||.+.+||+.+..... . ...|.+++|+|+| ++.|..||.+++|+...++.
T Consensus 132 i~~~~p--~~av~~~dG~L~v~dl~~~~~~~---~---------~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~ 195 (388)
T 1xip_A 132 LKNVNN--TLVILNSVNDLSALDLRTKSTKQ---L---------AQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEME 195 (388)
T ss_dssp EEECSS--EEEEEETTSEEEEEETTTCCEEE---E---------EESEEEEEECSSE--EEEEETTSCEEEEEEETTEEE
T ss_pred EEecCC--CEEEEECCCCEEEEEccCCcccc---c---------cCCceEEEEcCCc--eEEEEcCCcEEEEcCCCcccc
Confidence 877655 38889999999999999776532 1 1379999999999 78899999999999987764
Q ss_pred -ceeecC----c---cccccceEEEEecCCCEEEE
Q psy988 152 -SCKYKG----Y---VNVSSQIKASFSHDGKYIVS 178 (408)
Q Consensus 152 -~~~~~~----~---~~~~~~~~~~~~~~~~~l~~ 178 (408)
...+.. . .+...+.++.|.+++.++++
T Consensus 196 ~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 196 KQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred ccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 444421 1 12356889999999988876
No 224
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.51 E-value=6e-11 Score=99.25 Aligned_cols=214 Identities=9% Similarity=-0.010 Sum_probs=130.6
Q ss_pred eEEEEEecCC-CEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccC
Q psy988 70 ITAANFCENG-KFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRD 148 (408)
Q Consensus 70 v~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 148 (408)
.....|+|++ ..+++...++.|..||.++++... .. ....+.++.++|+++.+++. . ..|.+||..+
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~---------~~~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~ 118 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTV-HA---------LPFMGSALAKISDSKQLIAS-D-DGLFLRDTAT 118 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE---------CSSCEEEEEEEETTEEEEEE-T-TEEEEEETTT
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EE---------CCCcceEEEEeCCCeEEEEE-C-CCEEEEECCC
Confidence 4567899975 455666678899999998765321 11 12368999999998766654 4 4599999987
Q ss_pred cccceeecCc--cccccceEEEEecCCCEEEEeec------CceEEEeeeccceeeeeecccCCCccccccccccceEEE
Q psy988 149 LNLSCKYKGY--VNVSSQIKASFSHDGKYIVSGSE------NQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTC 220 (408)
Q Consensus 149 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 220 (408)
++........ .....+..++++|+|+++++... .+.|+.++ ++... .+....
T Consensus 119 g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-------------~~~~~~----- 178 (326)
T 2ghs_A 119 GVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-------------KLFADI----- 178 (326)
T ss_dssp CCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-------------EEEEEE-----
T ss_pred CcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-------------EeeCCC-----
Confidence 7653322211 11234678899999986665432 13444444 21100 000000
Q ss_pred EEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEE-ecCCCeEEEEEcC--CC-eee--eEEeec-cc
Q psy988 221 AVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILV-TSNDSRIRLYDLR--DL-NLS--CKYKGY-VN 293 (408)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~d~~i~i~d~~--~~-~~~--~~~~~~-~~ 293 (408)
.....++|+|+++.++. .+.++.|.+||+. ++ +.. ..+... ..
T Consensus 179 ------------------------------~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~ 228 (326)
T 2ghs_A 179 ------------------------------SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGI 228 (326)
T ss_dssp ------------------------------SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTS
T ss_pred ------------------------------cccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCC
Confidence 11234566666765544 4567899999986 55 321 122211 11
Q ss_pred eeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEec-C
Q psy988 294 VSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFA-P 358 (408)
Q Consensus 294 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~ 358 (408)
......++++++|++.++...++.|..|+.. + +.+..+..+...+++++|+ |
T Consensus 229 ~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~-g------------~~~~~i~~~~~~~~~~af~g~ 281 (326)
T 2ghs_A 229 KGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-G------------NHIARYEVPGKQTTCPAFIGP 281 (326)
T ss_dssp SSEEEEEEECTTSCEEEEEETTTEEEEECTT-C------------CEEEEEECSCSBEEEEEEEST
T ss_pred CCCCCeeEECCCCCEEEEEeCCCEEEEECCC-C------------CEEEEEECCCCCcEEEEEecC
Confidence 2245678999999988777667889999874 3 3444455556679999998 7
No 225
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.51 E-value=1e-11 Score=113.83 Aligned_cols=308 Identities=12% Similarity=0.082 Sum_probs=173.4
Q ss_pred CceEEEEeccCCeeEeEEEeCCc------------eEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCC-c-
Q psy988 2 DKTVRLWHISRKECLCCFQHIDF------------VTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQ-T- 67 (408)
Q Consensus 2 Dg~i~vwd~~~~~~~~~~~h~~~------------v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~-~- 67 (408)
++.|.-+|..+|+.+-.+..... -..+++ .+..++.++.|+.|..+|..+++..- ....+ .
T Consensus 86 ~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~---~~~~v~v~~~dg~l~alD~~tG~~~W--~~~~~~~~ 160 (677)
T 1kb0_A 86 WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL---WKGKVYVGAWDGRLIALDAATGKEVW--HQNTFEGQ 160 (677)
T ss_dssp GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE---ETTEEEEECTTSEEEEEETTTCCEEE--EEETTTTC
T ss_pred CCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE---ECCEEEEEcCCCEEEEEECCCCCEEe--eecCCcCc
Confidence 46788899999999887763221 122333 34568888889999999999998763 23222 1
Q ss_pred ---eeeEEEEEecCCCEEEEEec------CCEEEEEeccCCeeeEEEEEeecccc---------------c---------
Q psy988 68 ---KLITAANFCENGKFAVVGSY------DGRCIFYTTDQLKYHTQIHVRSTRGK---------------N--------- 114 (408)
Q Consensus 68 ---~~v~~~~~~~~~~~l~~~~~------dg~i~iw~~~~~~~~~~~~~~~~~~~---------------~--------- 114 (408)
..+.+.-.. .+..++.++. +|.|+.+|..+++............. .
T Consensus 161 ~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~ 239 (677)
T 1kb0_A 161 KGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAG 239 (677)
T ss_dssp CSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHC
T ss_pred CcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeC
Confidence 111111111 2345555543 69999999999988766654221100 0
Q ss_pred cCCCCeEEEeeCCCCCeEEEeeCCC-------------------eEEEEEccCcccceeecCccc-------cccceEEE
Q psy988 115 ATGRKISGIEPMPGEDKILVTSNDS-------------------RIRLYDLRDLNLSCKYKGYVN-------VSSQIKAS 168 (408)
Q Consensus 115 ~~~~~v~~~~~~~~~~~l~~~~~dg-------------------~i~i~d~~~~~~~~~~~~~~~-------~~~~~~~~ 168 (408)
........++++|++..++++..++ .|..+|.++++.+..++...+ .....-+.
T Consensus 240 ~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~ 319 (677)
T 1kb0_A 240 GGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILAD 319 (677)
T ss_dssp EECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEE
T ss_pred CCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEe
Confidence 1111223567888888888886653 599999999998877654221 11222233
Q ss_pred EecCC---CEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceE------------------------EEE
Q psy988 169 FSHDG---KYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVV------------------------TCA 221 (408)
Q Consensus 169 ~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v------------------------~~~ 221 (408)
...+| ..++.++.+|.++++|.++++........... ....+.....++ ..+
T Consensus 320 ~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~-~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~ 398 (677)
T 1kb0_A 320 IKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVN-WASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPM 398 (677)
T ss_dssp EEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCS-SEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCC
T ss_pred cccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccC-cccccCCCCceeeccccCcCCCccEECcCcccccCCCCc
Confidence 44577 67899999999999999888765432211100 000000000000 133
Q ss_pred EEeCCcceeeeecCCCCCCCc-eeeec-C-------------CCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeee
Q psy988 222 VFAPCPELIIAQMEPDKSEST-GYVLN-A-------------TGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSC 286 (408)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~-~~~~~-~-------------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 286 (408)
+++|+...+++.......... ...+. . .......+...| ....+.|..||+.+++.+-
T Consensus 399 a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~-------~~~~g~l~A~D~~tG~~~W 471 (677)
T 1kb0_A 399 SFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPK-------SKPFGRLLAWDPVAQKAAW 471 (677)
T ss_dssp EEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCC-------SCCEEEEEEEETTTTEEEE
T ss_pred eEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCC-------CCCccEEEEEeCCCCcEEe
Confidence 445544444332110000000 00000 0 000000000000 0123789999999999887
Q ss_pred EEeeccceeceeEEEEcCCCCEEEEecCCceEEEeecccc
Q psy988 287 KYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHD 326 (408)
Q Consensus 287 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 326 (408)
.+.... ......++.++.+++.++.||.+++||..++
T Consensus 472 ~~~~~~---~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG 508 (677)
T 1kb0_A 472 SVEHVS---PWNGGTLTTAGNVVFQGTADGRLVAYHAATG 508 (677)
T ss_dssp EEEESS---SCCCCEEEETTTEEEEECTTSEEEEEETTTC
T ss_pred ecCCCC---CCcCcceEeCCCEEEEECCCCcEEEEECCCC
Confidence 776432 2334456678889999999999999999998
No 226
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.50 E-value=2.8e-11 Score=100.33 Aligned_cols=236 Identities=11% Similarity=0.074 Sum_probs=140.4
Q ss_pred eecCCceeeEEEEEecCCC-EEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCe
Q psy988 62 EVEGQTKLITAANFCENGK-FAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSR 140 (408)
Q Consensus 62 ~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 140 (408)
.+...........|+|+|+ ++++...++.|..|+.. ++. ..... ....+..++++++++.+++...++.
T Consensus 39 ~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~-~~~~~--------~~~~~~gl~~d~dG~l~v~~~~~~~ 108 (305)
T 3dr2_A 39 TLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTV-DVLLD--------ATAFTNGNAVDAQQRLVHCEHGRRA 108 (305)
T ss_dssp EEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCE-EEEEE--------SCSCEEEEEECTTSCEEEEETTTTE
T ss_pred EEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCE-EEEeC--------CCCccceeeECCCCCEEEEECCCCE
Confidence 4444555678899999998 56666678999999884 332 11111 2246889999999986655555678
Q ss_pred EEEEEccCcccceeecCc--cccccceEEEEecCCCEEEE----eec-------------CceEEEeeeccceeeeeecc
Q psy988 141 IRLYDLRDLNLSCKYKGY--VNVSSQIKASFSHDGKYIVS----GSE-------------NQCIYIWKTHHDYAKFSSVR 201 (408)
Q Consensus 141 i~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~----~~~-------------dg~i~i~d~~~~~~~~~~~~ 201 (408)
|..|+.. ++........ .....+..++++++|+..++ |.. .+.|+.+|..++...
T Consensus 109 v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~----- 182 (305)
T 3dr2_A 109 ITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQ----- 182 (305)
T ss_dssp EEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCE-----
T ss_pred EEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEE-----
Confidence 9999986 4432221111 11123556889999987775 321 134555544321100
Q ss_pred cCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCC------CeEE
Q psy988 202 RDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSND------SRIR 275 (408)
Q Consensus 202 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------~~i~ 275 (408)
.+. .......++|+|+++.|+++... +.|.
T Consensus 183 ------------------~~~--------------------------~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~ 218 (305)
T 3dr2_A 183 ------------------RMA--------------------------DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEIT 218 (305)
T ss_dssp ------------------EEE--------------------------EESSEEEEEECTTSSEEEEEECCC---CCCEEE
T ss_pred ------------------EEe--------------------------cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEE
Confidence 000 01123456677777766666544 7899
Q ss_pred EEEcCCCeee--eEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEE
Q psy988 276 LYDLRDLNLS--CKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTC 353 (408)
Q Consensus 276 i~d~~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 353 (408)
+|++..+... ..+... .......++++++|++.+ +..+ .|.+|+... +.+..+..+. .+.+
T Consensus 219 ~~~~~~~~l~~~~~~~~~-~~~~pdgi~~d~~G~lwv-~~~~-gv~~~~~~g-------------~~~~~~~~~~-~~~~ 281 (305)
T 3dr2_A 219 AFAWRDGALHDRRHFASV-PDGLPDGFCVDRGGWLWS-SSGT-GVCVFDSDG-------------QLLGHIPTPG-TASN 281 (305)
T ss_dssp EEEEETTEEEEEEEEECC-SSSCCCSEEECTTSCEEE-CCSS-EEEEECTTS-------------CEEEEEECSS-CCCE
T ss_pred EEEecCCCccCCeEEEEC-CCCCCCeEEECCCCCEEE-ecCC-cEEEECCCC-------------CEEEEEECCC-ceeE
Confidence 9998765411 111111 112344689999999544 4444 499998753 3444444333 5889
Q ss_pred EEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEE
Q psy988 354 AVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRV 390 (408)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~i 390 (408)
++|+| +++.|..++.++..++
T Consensus 282 ~~f~~----------------d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 282 CTFDQ----------------AQQRLFITGGPCLWML 302 (305)
T ss_dssp EEECT----------------TSCEEEEEETTEEEEE
T ss_pred EEEeC----------------CCCEEEEEcCCeEEEE
Confidence 99998 8877777776654443
No 227
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.46 E-value=6.4e-15 Score=125.32 Aligned_cols=223 Identities=9% Similarity=0.015 Sum_probs=116.6
Q ss_pred CCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeecccc
Q psy988 34 DDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGK 113 (408)
Q Consensus 34 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 113 (408)
++..+++++.||.|+.||..+++.. ..+.. ..+.+..+..++..+++++.||.|+.||.++++.............
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~--W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~ 83 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIK--WTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELV 83 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEE--EEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEE--EEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccc
Confidence 4678999999999999999999876 33333 3455555667787888888999999999988765433321110000
Q ss_pred ccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccc
Q psy988 114 NATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHD 193 (408)
Q Consensus 114 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 193 (408)
...+ .+. .+..+++++.++.|+.||.++++.+..+..+.. ..++|++..+++++.++.|+.||.+++
T Consensus 84 --~~sp----~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~------~~~~p~~~~v~~~~~dg~v~a~d~~tG 150 (369)
T 2hz6_A 84 --QASP----CRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA------DSLSPSTSLLYLGRTEYTITMYDTKTR 150 (369)
T ss_dssp --TTCS----CC------CCCCEEEEEEEEECCC----------------------------EEEEEEEEEEECCCSSSS
T ss_pred --ccCc----eEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc------ccccccCCEEEEEecCCEEEEEECCCC
Confidence 0011 111 355778888899999999999998776654321 345668888999999999999999765
Q ss_pred eeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCC---CCeEEEecC
Q psy988 194 YAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPG---EDKILVTSN 270 (408)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~ 270 (408)
..... +.. .. + ....+.++ +..+++++.
T Consensus 151 ~~~W~------------~~~-----~~--~------------------------------~~~~~~~~~~~~~~v~~~~~ 181 (369)
T 2hz6_A 151 ELRWN------------ATY-----FD--Y------------------------------AASLPEDDVDYKMSHFVSNG 181 (369)
T ss_dssp SCCCE------------EEE-----EE--E------------------------------CCBCCCCCTTCCCCEEEEET
T ss_pred CEEEe------------Eec-----cc--c------------------------------cCccccCCccccceEEEECC
Confidence 43221 000 00 0 01111221 144667888
Q ss_pred CCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEE----EEecCCceEEEeecccc
Q psy988 271 DSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYI----VSGSENQCIYIWKTHHD 326 (408)
Q Consensus 271 d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l----~~~~~dg~i~iw~~~~~ 326 (408)
+|.++.||..+++.+-.+..... .+....++++|... +.+ ++.++.+|..++
T Consensus 182 dg~v~a~d~~tG~~~W~~~~~~p--v~~~~~~~~dg~~~v~~~~~~--~~~l~~ld~~tG 237 (369)
T 2hz6_A 182 DGLVVTVDSESGDVLWIQNYASP--VVAFYVWQREGLRKVMHINVA--VETLRYLTFMSG 237 (369)
T ss_dssp SCEEEEECTTTCCEEEEEECSSC--EEEEEECTTSSCEEECCEEEE--HHHHHHHHHHHH
T ss_pred CCEEEEEECCCCcEEEEecCCCc--eEEEEEecCCceEeccceeec--ccceeeeehhcC
Confidence 99999999999998776653221 12233455565432 112 345666666554
No 228
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.44 E-value=1e-10 Score=107.34 Aligned_cols=296 Identities=11% Similarity=0.050 Sum_probs=172.8
Q ss_pred CCEEEEEeCCCcEEEEecCCCCceeeeeecCCce---------eeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEE
Q psy988 35 DRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTK---------LITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQI 105 (408)
Q Consensus 35 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 105 (408)
+..++.++.++.|.-+|..+++.+-......... ....+.+ .+..++.++.|+.+..+|..+++.....
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence 3456777778999999999988653222221110 0012222 4567888899999999999999887665
Q ss_pred EEeeccccccCCCCeEE-EeeCCCCCeEEEeeC------CCeEEEEEccCcccceeecCcccc-----------------
Q psy988 106 HVRSTRGKNATGRKISG-IEPMPGEDKILVTSN------DSRIRLYDLRDLNLSCKYKGYVNV----------------- 161 (408)
Q Consensus 106 ~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~----------------- 161 (408)
....... ....+.. ... .+..+++++. ++.|+.+|.++++.+..+......
T Consensus 155 ~~~~~~~---~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w 229 (677)
T 1kb0_A 155 NTFEGQK---GSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTW 229 (677)
T ss_dssp ETTTTCC---SSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTS
T ss_pred cCCcCcC---cCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccc
Confidence 4320000 0001111 011 2456666653 689999999999987665432111
Q ss_pred -------------ccceEEEEecCCCEEEEeecCce-------------------EEEeeeccceeeeeecccCCCcccc
Q psy988 162 -------------SSQIKASFSHDGKYIVSGSENQC-------------------IYIWKTHHDYAKFSSVRRDRNDFWE 209 (408)
Q Consensus 162 -------------~~~~~~~~~~~~~~l~~~~~dg~-------------------i~i~d~~~~~~~~~~~~~~~~~~~~ 209 (408)
.....+++++++..++.+..++. |..+|..+++.........
T Consensus 230 ~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~------ 303 (677)
T 1kb0_A 230 DPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETP------ 303 (677)
T ss_dssp CGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESST------
T ss_pred cccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCC------
Confidence 00124678888888888876653 5555555443332211000
Q ss_pred ccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCC---CeEEEecCCCeEEEEEcCCCeeee
Q psy988 210 GIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGE---DKILVTSNDSRIRLYDLRDLNLSC 286 (408)
Q Consensus 210 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~d~~i~i~d~~~~~~~~ 286 (408)
+... -... ...+.-+....+| +.++.++.+|.++++|..+|+++.
T Consensus 304 ----~d~w---------------------------d~~~-~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~ 351 (677)
T 1kb0_A 304 ----GDNW---------------------------DYTS-TQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFIS 351 (677)
T ss_dssp ----TCCS---------------------------CCCC-CSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEE
T ss_pred ----Cccc---------------------------cccc-CCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEec
Confidence 0000 0000 0001111111244 567888999999999999999877
Q ss_pred EEeeccce---------ece------------------------eEEEEcCCCCEEEEecCC------------------
Q psy988 287 KYKGYVNV---------SSQ------------------------IKASFSHDGKYIVSGSEN------------------ 315 (408)
Q Consensus 287 ~~~~~~~~---------~~v------------------------~~~~~s~~~~~l~~~~~d------------------ 315 (408)
.+...... ..+ ..++++|++.++++...+
T Consensus 352 ~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~ 431 (677)
T 1kb0_A 352 AKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGP 431 (677)
T ss_dssp EEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCT
T ss_pred cccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccc
Confidence 66522100 000 146889988888775432
Q ss_pred -------------------------ceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCC
Q psy988 316 -------------------------QCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPD 370 (408)
Q Consensus 316 -------------------------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~ 370 (408)
|.|..||+.+++ .+-... +..++....+..
T Consensus 432 ~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~------------~~W~~~-~~~~~~~g~~~~------------ 486 (677)
T 1kb0_A 432 GKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQK------------AAWSVE-HVSPWNGGTLTT------------ 486 (677)
T ss_dssp TSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTE------------EEEEEE-ESSSCCCCEEEE------------
T ss_pred cccccccccccccccccccCCCCCccEEEEEeCCCCc------------EEeecC-CCCCCcCcceEe------------
Confidence 678888887762 221121 333344444555
Q ss_pred CCCCcccEEEEEecCCeEEEEeCCCCCCcccccc
Q psy988 371 KSESTGYVLVSADFNGVIRVFLNKTKPKHSSLPV 404 (408)
Q Consensus 371 ~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~ 404 (408)
++.+++.++.||.+++||..+++.+..+.+
T Consensus 487 ----~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~ 516 (677)
T 1kb0_A 487 ----AGNVVFQGTADGRLVAYHAATGEKLWEAPT 516 (677)
T ss_dssp ----TTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred ----CCCEEEEECCCCcEEEEECCCCceeeeeeC
Confidence 677888899999999999999998766654
No 229
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.43 E-value=3.2e-10 Score=104.31 Aligned_cols=139 Identities=12% Similarity=0.097 Sum_probs=85.4
Q ss_pred CCEEEEEeCCCcEEEEecCCCCceeeeeecCCce----------ee-EEEEEecCCCEEEEEecCCEEEEEeccCCeeeE
Q psy988 35 DRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTK----------LI-TAANFCENGKFAVVGSYDGRCIFYTTDQLKYHT 103 (408)
Q Consensus 35 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~----------~v-~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~ 103 (408)
+..+++++.++.|.-+|..+++.+- ....... .+ ..+.. .+..++.++.|+.|..+|.++++...
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W--~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W 145 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIW--KYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAW 145 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEE--EECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeE--EEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEee
Confidence 4467777788999999999988653 2222111 00 11122 45678888999999999999998876
Q ss_pred EEEEe-eccccccCCCCeEEEeeCC--CCCeEEEee------CCCeEEEEEccCcccceeecCcc---------------
Q psy988 104 QIHVR-STRGKNATGRKISGIEPMP--GEDKILVTS------NDSRIRLYDLRDLNLSCKYKGYV--------------- 159 (408)
Q Consensus 104 ~~~~~-~~~~~~~~~~~v~~~~~~~--~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~--------------- 159 (408)
..... .... ...+..+| .+..+++++ .+|.|+.||.++++.+..+....
T Consensus 146 ~~~~~~~~~~-------~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~ 218 (689)
T 1yiq_A 146 SVDTRADHKR-------SYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIA 218 (689)
T ss_dssp EEECCSCTTS-------CCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHH
T ss_pred eecCcCCCCC-------CccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCccccccccccccc
Confidence 65532 1000 00111111 134555553 36899999999999876654210
Q ss_pred --------------ccccceEEEEecCCCEEEEeecCce
Q psy988 160 --------------NVSSQIKASFSHDGKYIVSGSENQC 184 (408)
Q Consensus 160 --------------~~~~~~~~~~~~~~~~l~~~~~dg~ 184 (408)
....-..++++|++..++.+..++.
T Consensus 219 ~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~ 257 (689)
T 1yiq_A 219 AKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGS 257 (689)
T ss_dssp HTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEE
T ss_pred ccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCC
Confidence 0000124678888888988887764
No 230
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.43 E-value=7.9e-11 Score=108.29 Aligned_cols=309 Identities=13% Similarity=0.082 Sum_probs=171.2
Q ss_pred CceEEEEeccCCeeEeEEEeCCc-----------e-EEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCcee
Q psy988 2 DKTVRLWHISRKECLCCFQHIDF-----------V-TAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKL 69 (408)
Q Consensus 2 Dg~i~vwd~~~~~~~~~~~h~~~-----------v-~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 69 (408)
++.|.-+|..+|+.+-.+..... + ..+.. .+..++.++.|+.|..+|..+++..-......+...
T Consensus 79 ~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~ 155 (689)
T 1yiq_A 79 FSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV---WKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKR 155 (689)
T ss_dssp GGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE---ETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTS
T ss_pred CCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE---ECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCC
Confidence 56788899999999887763211 1 11233 345688888999999999999987632222101110
Q ss_pred eEEEEEec---CCCEEEEEe------cCCEEEEEeccCCeeeEEEEEeeccccc-----------------------cCC
Q psy988 70 ITAANFCE---NGKFAVVGS------YDGRCIFYTTDQLKYHTQIHVRSTRGKN-----------------------ATG 117 (408)
Q Consensus 70 v~~~~~~~---~~~~l~~~~------~dg~i~iw~~~~~~~~~~~~~~~~~~~~-----------------------~~~ 117 (408)
...+..+| ++. ++.++ .+|.|..||.++++.............. ...
T Consensus 156 ~~~~~~sP~v~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~ 234 (689)
T 1yiq_A 156 SYTITGAPRVVNGK-VVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGG 234 (689)
T ss_dssp CCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEEC
T ss_pred CccccCCcEEECCE-EEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCC
Confidence 01111111 444 44443 3689999999999887665421100000 011
Q ss_pred CCeEEEeeCCCCCeEEEeeCCC-------------------eEEEEEccCcccceeecCcccc-------ccceEEEEec
Q psy988 118 RKISGIEPMPGEDKILVTSNDS-------------------RIRLYDLRDLNLSCKYKGYVNV-------SSQIKASFSH 171 (408)
Q Consensus 118 ~~v~~~~~~~~~~~l~~~~~dg-------------------~i~i~d~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 171 (408)
.....+++.|+...+++++.++ .|..+|.++++.+..++...+. ..........
T Consensus 235 ~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~ 314 (689)
T 1yiq_A 235 TAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPI 314 (689)
T ss_dssp CCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE
T ss_pred ccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeecc
Confidence 1123577888888999887765 3999999999988776542111 1111122233
Q ss_pred CCC---EEEEeecCceEEEeeeccceeeeeecccCCCccccc------------------cccccce-----------EE
Q psy988 172 DGK---YIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEG------------------IKAHNAV-----------VT 219 (408)
Q Consensus 172 ~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~-----------v~ 219 (408)
+|+ .++.++.+|.++++|.++++.......... .+.. +...... -.
T Consensus 315 ~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~--~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~ 392 (689)
T 1yiq_A 315 DGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQ--SWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQ 392 (689)
T ss_dssp TTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCC--SSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSS
T ss_pred CCcEEEEEEEECCCCeEEEEECCCCCEecccccccc--ccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCC
Confidence 565 788999999999999988876532211110 0000 0000000 01
Q ss_pred EEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEe------------------cCCCeEEEEEcCC
Q psy988 220 CAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVT------------------SNDSRIRLYDLRD 281 (408)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~------------------~~d~~i~i~d~~~ 281 (408)
.++++|+...+++......... ...... . .+.+.+..+..+ ..+|.|..||+.+
T Consensus 393 ~~a~dp~~~~~yv~~~~~~~~~---~~~~~~-~----~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~t 464 (689)
T 1yiq_A 393 PMSYNPDTGLVYIPAHIMSAYY---EHIPEA-P----KRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVK 464 (689)
T ss_dssp CCEEETTTTEEEEEEEECCEEE---ECCSSC-C----CCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTT
T ss_pred cceECCCCCEEEEeccccceee---eecccc-c----cccccccccccCccccccCcccccCCCCCCCcceeEEEEECCC
Confidence 1444554444333211000000 000000 0 000000000000 1248899999999
Q ss_pred CeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccC
Q psy988 282 LNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDY 327 (408)
Q Consensus 282 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 327 (408)
++.+-.++.+.. ...-.++..+.+++.|+.||.++.||..+++
T Consensus 465 G~~~W~~~~~~~---~~~g~~~tagglvf~gt~dg~l~a~D~~tG~ 507 (689)
T 1yiq_A 465 QQAAWEVPYVTI---FNGGTLSTAGNLVFEGSADGRVIAYAADTGE 507 (689)
T ss_dssp TEEEEEEEESSS---CCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred CCeEeEccCCCC---ccCccceECCCEEEEECCCCcEEEEECCCCc
Confidence 998887765432 2233566678899999999999999999983
No 231
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.39 E-value=3.6e-11 Score=101.01 Aligned_cols=288 Identities=15% Similarity=0.091 Sum_probs=163.2
Q ss_pred CceEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCC
Q psy988 2 DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGK 80 (408)
Q Consensus 2 Dg~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 80 (408)
++.|..|| .+++.+.... +...+.++...+ ++. |..++.+ |..+|. +++.. ..............+. +.
T Consensus 39 ~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~-~g~-l~v~t~~--l~~~d~-~g~~~--~~~~~~~~~~~~~~~~--~~ 108 (330)
T 3hxj_A 39 NKNLYAIN-TDGSVKWFFKSGEIIECRPSIGK-DGT-IYFGSDK--VYAINP-DGTEK--WRFDTKKAIVSDFTIF--ED 108 (330)
T ss_dssp TTTTEEEC-TTSCEEESSCGGGEEEECCEETT-TTE-ECCSSCE--EEEECC-CGGGG--GGSCC-----CCEEEE--TT
T ss_pred CCEEEEEC-CCCcEEEEEecCCCcccceEEec-CCc-EEEecCc--EEEECC-CCcEE--EEEECCCCcccCceEE--CC
Confidence 56678888 7777765544 344457777776 665 5555554 888886 44433 1222222222222333 45
Q ss_pred EEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccc
Q psy988 81 FAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVN 160 (408)
Q Consensus 81 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 160 (408)
.+..++.++.+..+|.. ++....... ....+.++...+++. +++++.++.|..+|.. ++....+.....
T Consensus 109 ~l~v~t~~~~l~~~d~~-g~~~~~~~~--------~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~ 177 (330)
T 3hxj_A 109 ILYVTSMDGHLYAINTD-GTEKWRFKT--------KKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDA 177 (330)
T ss_dssp EEEEECTTSEEEEECTT-SCEEEEEEC--------SSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSC
T ss_pred EEEEEecCCEEEEEcCC-CCEEEEEcC--------CCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCC
Confidence 67788889999999988 554333221 112345556665554 7777788999999998 766555543222
Q ss_pred cccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCC
Q psy988 161 VSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSE 240 (408)
Q Consensus 161 ~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 240 (408)
.+.++...+++... .++ +.+..+| .++...... .
T Consensus 178 --~~~~~~~d~~g~l~-v~t--~~l~~~d-~~g~~~~~~------------~---------------------------- 211 (330)
T 3hxj_A 178 --ITSAASIGKDGTIY-FGS--DKVYAIN-PDGTEKWNF------------Y---------------------------- 211 (330)
T ss_dssp --CCSCCEECTTCCEE-EES--SSEEEEC-TTSCEEEEE------------C----------------------------
T ss_pred --ceeeeEEcCCCEEE-EEe--CEEEEEC-CCCcEEEEE------------c----------------------------
Confidence 24456666777644 444 7788888 443221110 0
Q ss_pred CceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEE
Q psy988 241 STGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYI 320 (408)
Q Consensus 241 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 320 (408)
.....+.++...+++. |.+++.++.+..+|. +++....+..... .+..+.+.+++ .|..++.+|.|..
T Consensus 212 -------~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~~~~--~~~~~~~~~~g-~l~v~t~~ggl~~ 279 (330)
T 3hxj_A 212 -------AGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTEKWRFKTGKR--IESSPVIGNTD-TIYFGSYDGHLYA 279 (330)
T ss_dssp -------CSSCCCSCCEECTTSC-EEEEETTTEEEEECT-TSCEEEEEECSSC--CCSCCEECTTS-CEEEECTTCEEEE
T ss_pred -------cCCcceeceEECCCCe-EEEEcCCCeEEEECC-CCCEeEEeeCCCC--ccccceEcCCC-eEEEecCCCCEEE
Confidence 0112244455555554 445566778888874 5555555543222 22345555555 5666777888999
Q ss_pred eeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCCC
Q psy988 321 WKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKPK 398 (408)
Q Consensus 321 w~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 398 (408)
+|. ++ +.+.........+.++...+ +|+ |..++.+|.+++...+..+.
T Consensus 280 ~d~-~g------------~~~~~~~~~~~~~~~~~~d~----------------~g~-l~~gt~~G~~~~~~~~~~~~ 327 (330)
T 3hxj_A 280 INP-DG------------TEKWNFETGSWIIATPVIDE----------------NGT-IYFGTRNGKFYALFNLEHHH 327 (330)
T ss_dssp ECT-TS------------CEEEEEECSSCCCSCCEECT----------------TCC-EEEECTTSCEEEEEC-----
T ss_pred ECC-CC------------cEEEEEEcCCccccceEEcC----------------CCE-EEEEcCCCeEEEEecccccc
Confidence 985 33 22222222344566677766 665 45578899999988776543
No 232
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.38 E-value=3.3e-09 Score=90.82 Aligned_cols=280 Identities=13% Similarity=0.102 Sum_probs=165.0
Q ss_pred CCEEEEEeCCCcEEEEecCCCCceeeeeecCC-------ceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEE
Q psy988 35 DRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQ-------TKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHV 107 (408)
Q Consensus 35 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 107 (408)
+..+++++.++.|..+|.++++..-...+... ...+.+. ...++..++.++.++.|..+|.++++.......
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~ 131 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV 131 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence 45677888889999999999886532233211 1122221 223456788888999999999998887655433
Q ss_pred eeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCcccccc---ceEEEEecCCCEEEEeecCce
Q psy988 108 RSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSS---QIKASFSHDGKYIVSGSENQC 184 (408)
Q Consensus 108 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~dg~ 184 (408)
... ....+ .. .+..+++++.++.|..+|.++++.+..+........ ...... .+..++++..++.
T Consensus 132 ~~~----~~~~p----~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~--~~~~v~~g~~~g~ 199 (376)
T 3q7m_A 132 AGE----ALSRP----VV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT--AFGAAVVGGDNGR 199 (376)
T ss_dssp SSC----CCSCC----EE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE--ETTEEEECCTTTE
T ss_pred CCc----eEcCC----EE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE--ECCEEEEEcCCCE
Confidence 210 00111 11 255888888899999999999987766554322100 011122 2456888888999
Q ss_pred EEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCC--CC
Q psy988 185 IYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMP--GE 262 (408)
Q Consensus 185 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~ 262 (408)
+..+|..++............ . ...+.. +..+...| .+
T Consensus 200 l~~~d~~tG~~~w~~~~~~~~-------~-~~~~~~--------------------------------~~~~~~~p~~~~ 239 (376)
T 3q7m_A 200 VSAVLMEQGQMIWQQRISQAT-------G-STEIDR--------------------------------LSDVDTTPVVVN 239 (376)
T ss_dssp EEEEETTTCCEEEEEECCC---------------------------------------------------CCCCCCEEET
T ss_pred EEEEECCCCcEEEEEecccCC-------C-Cccccc--------------------------------ccccCCCcEEEC
Confidence 999998776544321110000 0 000000 00000001 24
Q ss_pred CeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccce
Q psy988 263 DKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWE 342 (408)
Q Consensus 263 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 342 (408)
..+++++.++.+..+|..+++.+...... ....+.. ++..|+.++.++.|..+|..++.....
T Consensus 240 ~~v~~~~~~g~l~~~d~~tG~~~w~~~~~----~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~----------- 302 (376)
T 3q7m_A 240 GVVFALAYNGNLTALDLRSGQIMWKRELG----SVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWT----------- 302 (376)
T ss_dssp TEEEEECTTSCEEEEETTTCCEEEEECCC----CEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEE-----------
T ss_pred CEEEEEecCcEEEEEECCCCcEEeeccCC----CCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEe-----------
Confidence 56777788999999999999887665432 1222333 467788888899999999988742211
Q ss_pred eee-eeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCCCccccc
Q psy988 343 GIK-AHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKPKHSSLP 403 (408)
Q Consensus 343 ~~~-~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~ 403 (408)
.. .....+..... .+..|..++.+|.|.++|..+++.....+
T Consensus 303 -~~~~~~~~~~~~~~------------------~~~~l~v~~~~g~l~~~d~~tG~~~~~~~ 345 (376)
T 3q7m_A 303 -QSDLLHRLLTSPVL------------------YNGNLVVGDSEGYLHWINVEDGRFVAQQK 345 (376)
T ss_dssp -ECTTTTSCCCCCEE------------------ETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred -ecccCCCcccCCEE------------------ECCEEEEEeCCCeEEEEECCCCcEEEEEe
Confidence 11 01111222222 23467788889999999999988655443
No 233
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.31 E-value=3.6e-10 Score=95.26 Aligned_cols=245 Identities=9% Similarity=0.031 Sum_probs=140.9
Q ss_pred eeeEEEEEecCCCEEEEEe--cCCEEEEEeccCCeeeEEEEEeec-cccccCCCCeEEEeeCCCCCeEEEeeC-----CC
Q psy988 68 KLITAANFCENGKFAVVGS--YDGRCIFYTTDQLKYHTQIHVRST-RGKNATGRKISGIEPMPGEDKILVTSN-----DS 139 (408)
Q Consensus 68 ~~v~~~~~~~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg 139 (408)
..+..++++++|+.+++.. .++.++||.+.+++.. ..... .....+-..+.+++++++++.+++-.. ++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~---~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~ 93 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI---PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVP 93 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE---ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCC
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee---cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCC
Confidence 5689999999999888864 2343566665543321 11110 111233457999999998765554333 57
Q ss_pred eEEEEEccCcccceeecCcc----ccccceEEEEecCCCEEE-Eee---cCceEEEeeeccceeeeeecccCCCcccccc
Q psy988 140 RIRLYDLRDLNLSCKYKGYV----NVSSQIKASFSHDGKYIV-SGS---ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGI 211 (408)
Q Consensus 140 ~i~i~d~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~-~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 211 (408)
.|.+||+.+++.+..+.... ....+..+++++++..++ +.. .++.|.+||+.++... +.+
T Consensus 94 ~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~------------r~~ 161 (343)
T 2qe8_A 94 KLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAA------------RVL 161 (343)
T ss_dssp EEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEE------------EEC
T ss_pred eEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEE------------EEe
Confidence 89999999888666554321 112356789998655554 443 5788999998654211 111
Q ss_pred ccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeec
Q psy988 212 KAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGY 291 (408)
Q Consensus 212 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 291 (408)
..|... .|+ ...+.+++..+.+.+.++.++.|..
T Consensus 162 ~~~~~~------~~~----------------------------~~~~~~~g~~~~~~~~~g~~~~~~~------------ 195 (343)
T 2qe8_A 162 QGYPGI------APE----------------------------DIDLVIDGVPVQIGQPDGTVIRPHL------------ 195 (343)
T ss_dssp TTCTTT------SCC----------------------------SCCCEETTEECBEECTTSCEECCCC------------
T ss_pred cCCCcc------ccc----------------------------ccceeECCEEEEeccCCCceeceec------------
Confidence 111000 000 0112223444455566666655421
Q ss_pred cceeceeEEEEcCCCCEEEEecCCc-eEEEeeccccCccccccccCccccce--eeeeeccceEEEEecCCchhhhhccC
Q psy988 292 VNVSSQIKASFSHDGKYIVSGSENQ-CIYIWKTHHDYAKFSSVRRDRNDFWE--GIKAHNAVVTCAVFAPCPELIIAQME 368 (408)
Q Consensus 292 ~~~~~v~~~~~s~~~~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~~~~~~~ 368 (408)
.+..++|+|||+.|+.+..++ .++.++....... ... ..+... ...++.+....+++++
T Consensus 196 ----~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~--~~~--~~~~~~~~~~~g~~g~pdgia~d~---------- 257 (343)
T 2qe8_A 196 ----GVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNL--QLT--DAELGSKIERYSEKPICDGISIDK---------- 257 (343)
T ss_dssp ----CEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCT--TCC--HHHHHTTCEEEEECCSCSCEEECT----------
T ss_pred ----ccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCC--CCC--hhhhhcceEecccCCCCceEEECC----------
Confidence 234689999999998887665 4444443211000 000 001111 1224445567899999
Q ss_pred CCCCCCcccEEEEEecCCeEEEEeCCCCC
Q psy988 369 PDKSESTGYVLVSADFNGVIRVFLNKTKP 397 (408)
Q Consensus 369 ~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 397 (408)
+|+++++...++.|.+|+..+++
T Consensus 258 ------~G~l~va~~~~~~V~~~d~~~G~ 280 (343)
T 2qe8_A 258 ------DHNIYVGDLAHSAIGVITSADRA 280 (343)
T ss_dssp ------TCCEEEEEGGGTEEEEEETTTTE
T ss_pred ------CCCEEEEccCCCeEEEEECCCCC
Confidence 89999999889999999984443
No 234
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.31 E-value=1.7e-08 Score=85.34 Aligned_cols=202 Identities=12% Similarity=0.037 Sum_probs=119.3
Q ss_pred cCCCEEEE-EecCCEEEEEeccCC----eeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCC------CeEEEEE
Q psy988 77 ENGKFAVV-GSYDGRCIFYTTDQL----KYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSND------SRIRLYD 145 (408)
Q Consensus 77 ~~~~~l~~-~~~dg~i~iw~~~~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~i~d 145 (408)
+++++|+. +..+++|.++|+.+. +....+......... .......+...|++ .++++..+ |.|.++|
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~-g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD 170 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVS-GYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLD 170 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHH-CEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEEC
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhccccc-CCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEE
Confidence 77777665 455689999999754 222222100010000 01134567788999 66665443 7899999
Q ss_pred ccCcccceeecCcccc-ccceEEEEecCCCEEEEee-------------------cCceEEEeeeccceeeeeecccCCC
Q psy988 146 LRDLNLSCKYKGYVNV-SSQIKASFSHDGKYIVSGS-------------------ENQCIYIWKTHHDYAKFSSVRRDRN 205 (408)
Q Consensus 146 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~-------------------~dg~i~i~d~~~~~~~~~~~~~~~~ 205 (408)
.++.+.+.++...... .....+.|+|+++.+++.. ....|.+||+.+.+...
T Consensus 171 ~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~-------- 242 (462)
T 2ece_A 171 HYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIH-------- 242 (462)
T ss_dssp TTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEE--------
T ss_pred CCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEee--------
Confidence 9999988887643222 1233477899999888884 35789999997532111
Q ss_pred ccccccccc--cceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEec------CCCeEEEE
Q psy988 206 DFWEGIKAH--NAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTS------NDSRIRLY 277 (408)
Q Consensus 206 ~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------~d~~i~i~ 277 (408)
.+... ......+. ++++|+++++++++ .+++|.+|
T Consensus 243 ----tI~vg~~g~~P~~i~---------------------------------f~~~Pdg~~aYV~~e~~~~~Lss~V~v~ 285 (462)
T 2ece_A 243 ----SLTLGEENRMALELR---------------------------------PLHDPTKLMGFINMVVSLKDLSSSIWLW 285 (462)
T ss_dssp ----EEESCTTEEEEEEEE---------------------------------ECSSTTCCEEEEEEEEETTTCCEEEEEE
T ss_pred ----EEecCCCCCccceeE---------------------------------eeECCCCCEEEEEEeeeccCCCceEEEE
Confidence 11110 01111111 23466666666655 45688777
Q ss_pred EcCCCeee--eEEeeccc----------------eeceeEEEEcCCCCEEEEecC-CceEEEeeccc
Q psy988 278 DLRDLNLS--CKYKGYVN----------------VSSQIKASFSHDGKYIVSGSE-NQCIYIWKTHH 325 (408)
Q Consensus 278 d~~~~~~~--~~~~~~~~----------------~~~v~~~~~s~~~~~l~~~~~-dg~i~iw~~~~ 325 (408)
....++.. +.+..... ......+.+||||++|.++.. .+.|.+||+..
T Consensus 286 ~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d 352 (462)
T 2ece_A 286 FYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISN 352 (462)
T ss_dssp EEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSS
T ss_pred EecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence 66554321 11110000 124568899999999987765 68999999864
No 235
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.29 E-value=3.6e-12 Score=108.40 Aligned_cols=192 Identities=8% Similarity=0.035 Sum_probs=100.5
Q ss_pred CCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCcc
Q psy988 128 GEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDF 207 (408)
Q Consensus 128 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 207 (408)
++..+++++.||.|+.||..+++.+..+.. . .+.+..+..++..+++++.||.|+.||.+++......
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~---~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~-------- 75 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-D---PVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKL-------- 75 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC-C---CSCCCC-----CCEEECTTTCCEEEC-----CCSEEC--------
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC-C---CceecceEcCCCEEEEeCCCCEEEEEECCCCceeeee--------
Confidence 478899999999999999999998877765 2 2333445567777888889999999998765432110
Q ss_pred ccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeE
Q psy988 208 WEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCK 287 (408)
Q Consensus 208 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 287 (408)
..+... .. . ....+. ++..+++++.++.++.||..+|+.+..
T Consensus 76 ----~~~~~~-----------~~------------------~----~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~ 117 (369)
T 2hz6_A 76 ----PFTIPE-----------LV------------------Q----ASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQT 117 (369)
T ss_dssp ----SCCHHH-----------HH------------------T----TCSCC------CCCCEEEEEEEEECCC-------
T ss_pred ----eccCcc-----------cc------------------c----cCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEE
Confidence 000000 00 0 000001 234566778899999999999998877
Q ss_pred EeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhcc
Q psy988 288 YKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQM 367 (408)
Q Consensus 288 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~ 367 (408)
+..+. ...++|++..+++++.|+.|+.||..++... -.+..+. .....+.++.
T Consensus 118 ~~~~~------~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~------------W~~~~~~--~~~~~~~~~~------- 170 (369)
T 2hz6_A 118 LSSAF------ADSLSPSTSLLYLGRTEYTITMYDTKTRELR------------WNATYFD--YAASLPEDDV------- 170 (369)
T ss_dssp ---------------------EEEEEEEEEEECCCSSSSSCC------------CEEEEEE--ECCBCCCCCT-------
T ss_pred ecCCC------cccccccCCEEEEEecCCEEEEEECCCCCEE------------EeEeccc--ccCccccCCc-------
Confidence 66532 1355678899999999999999999887322 1121111 1222233200
Q ss_pred CCCCCCCcccEEEEEecCCeEEEEeCCCCCCcccc
Q psy988 368 EPDKSESTGYVLVSADFNGVIRVFLNKTKPKHSSL 402 (408)
Q Consensus 368 ~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 402 (408)
..+ ..++.++.||.|+.||..+++..-..
T Consensus 171 -----~~~-~~v~~~~~dg~v~a~d~~tG~~~W~~ 199 (369)
T 2hz6_A 171 -----DYK-MSHFVSNGDGLVVTVDSESGDVLWIQ 199 (369)
T ss_dssp -----TCC-CCEEEEETSCEEEEECTTTCCEEEEE
T ss_pred -----ccc-ceEEEECCCCEEEEEECCCCcEEEEe
Confidence 001 45667788999999999988865443
No 236
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.26 E-value=5e-10 Score=97.90 Aligned_cols=244 Identities=12% Similarity=0.067 Sum_probs=153.5
Q ss_pred CCCEEEEEeC-CCcEEEEecCCCCceeeeeecCCceeeEEEEE-e-cCCCEEEEEe------------------cCCEEE
Q psy988 34 DDRYFLSGSL-DGKLRLWNIPDKKVAVWNEVEGQTKLITAANF-C-ENGKFAVVGS------------------YDGRCI 92 (408)
Q Consensus 34 ~~~~l~t~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~~l~~~~------------------~dg~i~ 92 (408)
||++|+.... ++.|.+.|+.+.++.....+.. ...+..+++ + |+++++++++ .++.+.
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~-g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPN-AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSS-CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCC-CCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 5667766655 5679999999988764334432 234677787 5 9999998884 346899
Q ss_pred EEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCC---------------------------------
Q psy988 93 FYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDS--------------------------------- 139 (408)
Q Consensus 93 iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--------------------------------- 139 (408)
+.|.++.+...+..... ....++++|+++++++++.+.
T Consensus 179 vID~~t~~v~~qI~Vgg---------~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk 249 (595)
T 1fwx_A 179 AVDADKWEVAWQVLVSG---------NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD 249 (595)
T ss_dssp EEETTTTEEEEEEEESS---------CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred EEECCCCeEEEEEEeCC---------CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCC
Confidence 99999988776665422 335577899999988887542
Q ss_pred -----eEEEEEccC--ccc-ceeecCccccccceEEEEecCCCEEEEee-cCceEEEeeeccceeeeeecccCCCccccc
Q psy988 140 -----RIRLYDLRD--LNL-SCKYKGYVNVSSQIKASFSHDGKYIVSGS-ENQCIYIWKTHHDYAKFSSVRRDRNDFWEG 210 (408)
Q Consensus 140 -----~i~i~d~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 210 (408)
.|.+.|.++ ++. +..+... ....++.++|||+++++++ .+..|.++|+.+....+
T Consensus 250 ~~~i~~V~VID~~~~~~~~~~~~Ipvg---~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~------------- 313 (595)
T 1fwx_A 250 YQELNGVKVVDGRKEASSLFTRYIPIA---NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVF------------- 313 (595)
T ss_dssp SEEETTEEEEECSGGGCCSSEEEEEEE---SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHH-------------
T ss_pred eeEECcEEEEeCcccCCceeEEEEecC---CCceEEEEcCCCCEEEEeCCCCCeEEEEECccccccc-------------
Confidence 355666665 322 2222221 2244689999999877765 57799999997532110
Q ss_pred cccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCC---------
Q psy988 211 IKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRD--------- 281 (408)
Q Consensus 211 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~--------- 281 (408)
.+. +.+.... .....-+..+..++|+|+|...++.-.|+.|.+||+.+
T Consensus 314 -~~~--------l~~~~~v--------------~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~ 370 (595)
T 1fwx_A 314 -YEN--------ADPRSAV--------------VAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEK 370 (595)
T ss_dssp -HSC--------CCGGGGE--------------EECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCS
T ss_pred -ccc--------cCcccce--------------EEEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccc
Confidence 000 0010000 00112344567778888884445567899999999987
Q ss_pred -CeeeeEEeeccceec---eeEEEEcCCCCEEEEecC---Cce----------EEEeecccc
Q psy988 282 -LNLSCKYKGYVNVSS---QIKASFSHDGKYIVSGSE---NQC----------IYIWKTHHD 326 (408)
Q Consensus 282 -~~~~~~~~~~~~~~~---v~~~~~s~~~~~l~~~~~---dg~----------i~iw~~~~~ 326 (408)
.+.+.++..+...+. .....++|||++|++... |+- -.++|+..+
T Consensus 371 ~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~ 432 (595)
T 1fwx_A 371 VDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGD 432 (595)
T ss_dssp CCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSS
T ss_pred cceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCC
Confidence 456666665533211 123467899999998643 432 278888654
No 237
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.24 E-value=8.8e-09 Score=94.51 Aligned_cols=142 Identities=13% Similarity=0.102 Sum_probs=84.2
Q ss_pred CCEEEEEeCCCcEEEEecCCCCceeeeeecCCc--------eee-EEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEE
Q psy988 35 DRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQT--------KLI-TAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQI 105 (408)
Q Consensus 35 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~--------~~v-~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 105 (408)
+..++.++.++.|.-+|..+++.+-........ ..+ ..+.+ .+..++.++.|+.|..+|..+++.....
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 345777777899999999998865222211100 000 11222 3557888889999999999999887665
Q ss_pred EEeeccccc-cCCCCeEEEeeCCCCCeEEEeeC------CCeEEEEEccCcccceeecCccc------------------
Q psy988 106 HVRSTRGKN-ATGRKISGIEPMPGEDKILVTSN------DSRIRLYDLRDLNLSCKYKGYVN------------------ 160 (408)
Q Consensus 106 ~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~------------------ 160 (408)
......... ....++ + .+..++++.. +|.|+.+|.++++.+..+.....
T Consensus 144 ~~~~~~~~~~~~~~P~----v--~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~ 217 (668)
T 1kv9_A 144 QTTDPAKPYSITGAPR----V--VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTW 217 (668)
T ss_dssp ECSCTTSSCBCCSCCE----E--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTC
T ss_pred ccCCCCCcceecCCCE----E--ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccC
Confidence 532111000 001111 1 1446666543 58999999999998776542100
Q ss_pred -----------cccceEEEEecCCCEEEEeecCce
Q psy988 161 -----------VSSQIKASFSHDGKYIVSGSENQC 184 (408)
Q Consensus 161 -----------~~~~~~~~~~~~~~~l~~~~~dg~ 184 (408)
......++++++...++.+..++.
T Consensus 218 ~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~ 252 (668)
T 1kv9_A 218 QGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGS 252 (668)
T ss_dssp CSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEE
T ss_pred CccceeeeCCCCccccceEEcCCCCEEEEeCCCCC
Confidence 000113578888888888877664
No 238
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.24 E-value=3.2e-09 Score=92.89 Aligned_cols=178 Identities=12% Similarity=0.146 Sum_probs=120.0
Q ss_pred CceEEEEeccCCeeEeEEE--eCCceEEEEE-c-CCCCCEEEEEe------------------CCCcEEEEecCCCCcee
Q psy988 2 DKTVRLWHISRKECLCCFQ--HIDFVTAICF-H-PRDDRYFLSGS------------------LDGKLRLWNIPDKKVAV 59 (408)
Q Consensus 2 Dg~i~vwd~~~~~~~~~~~--h~~~v~~~~~-s-p~~~~~l~t~~------------------~dg~i~iw~~~~~~~~~ 59 (408)
++.|.+.|+++.++...+. ....+..+++ + | +++++++++ .++.+.+.|.++.+...
T Consensus 111 ~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~ 189 (595)
T 1fwx_A 111 NTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAW 189 (595)
T ss_dssp TTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEE
T ss_pred CCEEEEEECCCceEeeEEeCCCCCCCcceeeeecC-CCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEE
Confidence 4568999999999988665 4567889998 5 8 888888885 24679999999876653
Q ss_pred eeeecCCceeeEEEEEecCCCEEEEEecCC---------------E-----------------------EEEEeccC--C
Q psy988 60 WNEVEGQTKLITAANFCENGKFAVVGSYDG---------------R-----------------------CIFYTTDQ--L 99 (408)
Q Consensus 60 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---------------~-----------------------i~iw~~~~--~ 99 (408)
.....+ ....++++|+|+++++.+.+. . |.+.|..+ .
T Consensus 190 qI~Vgg---~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~ 266 (595)
T 1fwx_A 190 QVLVSG---NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEAS 266 (595)
T ss_dssp EEEESS---CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGC
T ss_pred EEEeCC---CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCC
Confidence 222222 345677999999999888653 2 44444443 1
Q ss_pred ee-eEEEEEeeccccccCCCCeEEEeeCCCCCeEEEee-CCCeEEEEEccCcccc---------eeecCccccccceEEE
Q psy988 100 KY-HTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTS-NDSRIRLYDLRDLNLS---------CKYKGYVNVSSQIKAS 168 (408)
Q Consensus 100 ~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~---------~~~~~~~~~~~~~~~~ 168 (408)
+. ...+.. .....++.++|||+++++++ .+..|.++|+.+.+.. .......-......++
T Consensus 267 ~~~~~~Ipv---------g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~a 337 (595)
T 1fwx_A 267 SLFTRYIPI---------ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTA 337 (595)
T ss_dssp CSSEEEEEE---------ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEE
T ss_pred ceeEEEEec---------CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEE
Confidence 11 111111 12567799999999988875 4789999999865310 0011111223467799
Q ss_pred EecCCCEEEEeecCceEEEeeecc
Q psy988 169 FSHDGKYIVSGSENQCIYIWKTHH 192 (408)
Q Consensus 169 ~~~~~~~l~~~~~dg~i~i~d~~~ 192 (408)
|+++|...++...|++|.+||+..
T Consensus 338 F~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 338 FDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp ECTTSEEEEEETTTTEEEEEEHHH
T ss_pred ECCCCeEEEEEecCCcEEEEEhhH
Confidence 999994444556789999999865
No 239
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.23 E-value=1.2e-06 Score=82.72 Aligned_cols=344 Identities=11% Similarity=0.136 Sum_probs=202.4
Q ss_pred eEEEEeccCCeeEeEEE--------eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeec-----CCceee
Q psy988 4 TVRLWHISRKECLCCFQ--------HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVE-----GQTKLI 70 (408)
Q Consensus 4 ~i~vwd~~~~~~~~~~~--------h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~-----~~~~~v 70 (408)
-|.+||..+++...... ....|.++...+ ++. |..|+.+ -|.+|+..++......... -....|
T Consensus 236 Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~-lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i 312 (795)
T 4a2l_A 236 GLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDS-QNR-LWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSV 312 (795)
T ss_dssp CEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECT-TSC-EEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCE
T ss_pred CeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcC-CCC-EEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcE
Confidence 46777877665543321 135699999988 776 4445555 5899998776654221111 123579
Q ss_pred EEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcc
Q psy988 71 TAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLN 150 (408)
Q Consensus 71 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 150 (408)
.++...++|. |..|+.++-|..++..+...... .... .........|.++...+++ .|.+|+.++-|..||..+++
T Consensus 313 ~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~-~~~~-~~~~l~~~~V~~i~~d~~g-~lWiGt~~~Gl~~~~~~~~~ 388 (795)
T 4a2l_A 313 RSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNI-RNIP-YKNSLSDNVVSCIVEDKDK-NLWIGTNDGGLNLYNPITQR 388 (795)
T ss_dssp EEEEECTTSC-EEEEESSSCEEEECGGGGSSEEE-CCCT-TSSSCSCSSEEEEEECTTS-CEEEEESSSCEEEECTTTCC
T ss_pred EEEEEeCCcC-EEEEECCCCeEEeCCCcccceEE-cCCC-CCCCCCCCeeEEEEECCCC-CEEEEECCCCeEEEcCCCCc
Confidence 9999988887 56677777789998765543211 1100 0111123568999888766 46678877779999987765
Q ss_pred cceeecCc------cccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEe
Q psy988 151 LSCKYKGY------VNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFA 224 (408)
Q Consensus 151 ~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 224 (408)
........ .....+.++...++++.|.+|+.++-|..||..++....-. ... -......|.++...
T Consensus 389 ~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~--~~~------~~l~~~~v~~i~~d 460 (795)
T 4a2l_A 389 FTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFN--QRN------SQLVNENVYAILPD 460 (795)
T ss_dssp EEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEEC--TTT------SCCSCSCEEEEEEC
T ss_pred EEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEee--cCC------CCcCCCeeEEEEEC
Confidence 43322111 11244777888888875777777777999998764322110 000 00234568888888
Q ss_pred CCcceeeeecCCC----CCCCceeeec-------CCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEee---
Q psy988 225 PCPELIIAQMEPD----KSESTGYVLN-------ATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKG--- 290 (408)
Q Consensus 225 ~~~~~~~~~~~~~----~~~~~~~~~~-------~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--- 290 (408)
+++...+.+...- ........+. .....|.++...++|...+... +-+..||..+++. .+..
T Consensus 461 ~~g~lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~--~~~~~~~ 536 (795)
T 4a2l_A 461 GEGNLWLGTLSALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLDI--QKASILP 536 (795)
T ss_dssp SSSCEEEEESSCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTEE--EECCCSC
T ss_pred CCCCEEEEecCceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCeE--EEecCCC
Confidence 8887666543110 0111111111 1235688888898888766544 4588899877665 3321
Q ss_pred --ccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeee-eccceEEEEecCCchhhhhcc
Q psy988 291 --YVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKA-HNAVVTCAVFAPCPELIIAQM 367 (408)
Q Consensus 291 --~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~ 367 (408)
......+.++..+++|++.++.. . -+..||..+.... ......+ ....|.++...+
T Consensus 537 ~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~~~~----------~~~~~~gl~~~~i~~i~~d~--------- 595 (795)
T 4a2l_A 537 VSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKDKQIK----------RYNTTNGLPNNVVYGILEDS--------- 595 (795)
T ss_dssp SCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTTTEEE----------EECGGGTCSCSCEEEEEECT---------
T ss_pred CCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCCCcEE----------EeCCCCCCchhheEEEEECC---------
Confidence 11223678888899998666544 3 5778887654110 0000011 124588888888
Q ss_pred CCCCCCCcccEEEEEecCCeEEEEeCCCC
Q psy988 368 EPDKSESTGYVLVSADFNGVIRVFLNKTK 396 (408)
Q Consensus 368 ~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 396 (408)
+|++.+++ ++-|..|+..+.
T Consensus 596 -------~g~lWi~t--~~Gl~~~~~~~~ 615 (795)
T 4a2l_A 596 -------FGRLWLST--NRGISCFNPETE 615 (795)
T ss_dssp -------TSCEEEEE--TTEEEEEETTTT
T ss_pred -------CCCEEEEc--CCceEEEcCCCC
Confidence 77776665 344666776654
No 240
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.22 E-value=2.1e-08 Score=92.04 Aligned_cols=307 Identities=14% Similarity=0.113 Sum_probs=169.1
Q ss_pred CceEEEEeccCCeeEeEEEeCCce------------EEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCc--
Q psy988 2 DKTVRLWHISRKECLCCFQHIDFV------------TAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQT-- 67 (408)
Q Consensus 2 Dg~i~vwd~~~~~~~~~~~h~~~v------------~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~-- 67 (408)
++.|.-+|..+|+.+-.+...... ..+.+ .+..++.++.|+.|..+|..+++..-........
T Consensus 75 ~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~ 151 (668)
T 1kv9_A 75 WSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL---WGDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKP 151 (668)
T ss_dssp GGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE---EBTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSS
T ss_pred CCeEEEEECCCChhceEECCCCCccccccccccCCccceEE---ECCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCc
Confidence 467888899999988777522211 12233 2446788888999999999999876322221110
Q ss_pred eeeEEEEEecCCCEEEEEec------CCEEEEEeccCCeeeEEEEEeeccccc-----------------------cCCC
Q psy988 68 KLITAANFCENGKFAVVGSY------DGRCIFYTTDQLKYHTQIHVRSTRGKN-----------------------ATGR 118 (408)
Q Consensus 68 ~~v~~~~~~~~~~~l~~~~~------dg~i~iw~~~~~~~~~~~~~~~~~~~~-----------------------~~~~ 118 (408)
..+.+--.-.++ .++++.. +|.|..+|.++++.............. ....
T Consensus 152 ~~~~~~P~v~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~ 230 (668)
T 1kv9_A 152 YSITGAPRVVKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGT 230 (668)
T ss_dssp CBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECC
T ss_pred ceecCCCEEECC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCc
Confidence 111110001134 4555543 589999999999887766532100000 0111
Q ss_pred CeEEEeeCCCCCeEEEeeCCC-------------------eEEEEEccCcccceeecCcccc-------ccceEEEEecC
Q psy988 119 KISGIEPMPGEDKILVTSNDS-------------------RIRLYDLRDLNLSCKYKGYVNV-------SSQIKASFSHD 172 (408)
Q Consensus 119 ~v~~~~~~~~~~~l~~~~~dg-------------------~i~i~d~~~~~~~~~~~~~~~~-------~~~~~~~~~~~ 172 (408)
....+++.|+...+++++.++ .|..+|.++++.+..++...+. .......+..+
T Consensus 231 ~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~ 310 (668)
T 1kv9_A 231 VWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNID 310 (668)
T ss_dssp CCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEET
T ss_pred cccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccC
Confidence 223467888888888887665 4999999999988776542111 11222233346
Q ss_pred CC---EEEEeecCceEEEeeeccceeeeeecccCCCccccc-cc-cccceE------------------------EEEEE
Q psy988 173 GK---YIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEG-IK-AHNAVV------------------------TCAVF 223 (408)
Q Consensus 173 ~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~v------------------------~~~~~ 223 (408)
|+ .++.++.+|.++++|..+++.......... .+.. +. ....++ ..+++
T Consensus 311 G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~--~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~ 388 (668)
T 1kv9_A 311 GKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKV--TWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSF 388 (668)
T ss_dssp TEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCC--CSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEE
T ss_pred CcEEEEEEEECCCCEEEEEECCCCCEecccccccc--ccccccccccCCccccccccccCCeeEECCCCccccCCCcceE
Confidence 65 688999999999999988765532111100 0000 00 000000 01344
Q ss_pred eCCcceeeeecCCCCCCCceeeecCCCceeeeeccCC----------CCCeEE-EecCCCeEEEEEcCCCeeeeEEeecc
Q psy988 224 APCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMP----------GEDKIL-VTSNDSRIRLYDLRDLNLSCKYKGYV 292 (408)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----------~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~ 292 (408)
+|+...+.+...... ..+... ...+.+ .+...+ ....+|.|..||+.+++.+-+.....
T Consensus 389 dp~~g~~yv~~~~~~-----~~~~~~-----~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~ 458 (668)
T 1kv9_A 389 NPGTGLVYIPYQEVP-----GVYRNE-----GKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT 458 (668)
T ss_dssp ETTTTEEEEEEEECC-----EEECCC-----GGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS
T ss_pred CCCCCEEEEeccccc-----eEeeee-----ccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC
Confidence 444333322110000 000000 000000 001111 22355899999999999887766432
Q ss_pred ceeceeEEEEcCCCCEEEEecCCceEEEeeccccC
Q psy988 293 NVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDY 327 (408)
Q Consensus 293 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 327 (408)
. .....+...+.++++++.||.++.||..+++
T Consensus 459 ~---~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~ 490 (668)
T 1kv9_A 459 H---WNGGTLSTAGNLVFQGTAAGQMHAYSADKGE 490 (668)
T ss_dssp S---CCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred C---CcCceeEeCCCEEEEECCcccchhhhhhcCh
Confidence 2 2223445578899999999999999999873
No 241
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.21 E-value=9.3e-07 Score=83.43 Aligned_cols=353 Identities=10% Similarity=0.067 Sum_probs=199.5
Q ss_pred eEEEEeccCCeeEeEE--EeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeec-----CCceeeEEEEEe
Q psy988 4 TVRLWHISRKECLCCF--QHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVE-----GQTKLITAANFC 76 (408)
Q Consensus 4 ~i~vwd~~~~~~~~~~--~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~-----~~~~~v~~~~~~ 76 (408)
-|..||.++++..... .+...|.++...+ ++.+. .|+.++-+.+||..+++........ -....|.++...
T Consensus 194 Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lw-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d 271 (795)
T 4a2l_A 194 GLYTYSITQKTFEKVIPILGTKQIQAILQQS-PTRIW-VATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMD 271 (795)
T ss_dssp CEEEEETTTCCEEECC----CCCEEEEEEEE-TTEEE-EEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEEC
T ss_pred CEEEEeCCCCeEEEecCCCCCCeeEEEEEcC-CCCEE-EEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEc
Confidence 4667777666554332 1456789998887 66644 4554445899998776554321110 123569999988
Q ss_pred cCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeec
Q psy988 77 ENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYK 156 (408)
Q Consensus 77 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 156 (408)
++|.+. .|+.+ -|.+|+..+...... ..............|.++...++|. |.+|+.++-|..|+..+........
T Consensus 272 ~~g~lW-igt~~-Gl~~~~~~~~~~~~~-~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~ 347 (795)
T 4a2l_A 272 SQNRLW-IGTFN-DLNIYHEGTDSFASY-SSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRN 347 (795)
T ss_dssp TTSCEE-EEESS-CEEEEETTTTEEEEE-CCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECC
T ss_pred CCCCEE-EEeCC-hhheEcCCCCeEEEE-ecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcC
Confidence 888754 45555 588899876653221 1111011112335799999888764 6677777789999877654322111
Q ss_pred C----ccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcc-eee
Q psy988 157 G----YVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPE-LII 231 (408)
Q Consensus 157 ~----~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~ 231 (408)
. ......|.++...++|+ |..|+.++-|..||..++.-..-.. .... .........|.++...+++. ..+
T Consensus 348 ~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~--~~~~--~~~~l~~~~v~~i~~d~~g~~lWi 422 (795)
T 4a2l_A 348 IPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTL--QEDE--SARGIGSNNIKAVYVDEKKSLVYI 422 (795)
T ss_dssp CTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECC--C--------CCSCSCEEEEEEETTTTEEEE
T ss_pred CCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEec--CCCC--cccCCCCccEEEEEEcCCCCEEEE
Confidence 0 11123467777777776 6667777779999876542211000 0000 00001235688888888887 554
Q ss_pred eecCCC-----CCCCceeeec-----CCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEee----ccceece
Q psy988 232 AQMEPD-----KSESTGYVLN-----ATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKG----YVNVSSQ 297 (408)
Q Consensus 232 ~~~~~~-----~~~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~----~~~~~~v 297 (408)
.+.... ........+. .....|.++...+++...+... + -+.+||..+++....... ......+
T Consensus 423 gt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i 500 (795)
T 4a2l_A 423 GTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-S-ALVRFNPEQRSFTTIEKEKDGTPVVSKQI 500 (795)
T ss_dssp EETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-S-CEEEEETTTTEEEECCBCTTCCBCCCCCE
T ss_pred EeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-C-ceeEEeCCCCeEEEccccccccccCCceE
Confidence 432111 0111111111 2345788888888887665544 4 488999887654322111 1112467
Q ss_pred eEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCccc
Q psy988 298 IKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGY 377 (408)
Q Consensus 298 ~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~ 377 (408)
.++...++|++.+... +-+..|+..+....+ .... ..-......|.++...+ +|+
T Consensus 501 ~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~~~---~~~~----~~~~l~~~~i~~i~~d~----------------~g~ 555 (795)
T 4a2l_A 501 TTLFRDSHKRLWIGGE--EGLSVFKQEGLDIQK---ASIL----PVSNVTKLFTNCIYEAS----------------NGI 555 (795)
T ss_dssp EEEEECTTCCEEEEES--SCEEEEEEETTEEEE---CCCS----CSCGGGGSCEEEEEECT----------------TSC
T ss_pred EEEEECCCCCEEEEeC--CceEEEeCCCCeEEE---ecCC----CCCCCCCCeeEEEEECC----------------CCC
Confidence 8888999998776554 458888876542100 0000 00011345688999988 777
Q ss_pred EEEEEecCCeEEEEeCCCC
Q psy988 378 VLVSADFNGVIRVFLNKTK 396 (408)
Q Consensus 378 ~l~s~~~dg~v~iw~~~~~ 396 (408)
+.++.. . -|..|+..+.
T Consensus 556 lWigT~-~-Gl~~~d~~~~ 572 (795)
T 4a2l_A 556 IWVGTR-E-GFYCFNEKDK 572 (795)
T ss_dssp EEEEES-S-CEEEEETTTT
T ss_pred EEEEeC-C-CceeECCCCC
Confidence 666543 3 4777887654
No 242
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=99.21 E-value=2.8e-08 Score=82.93 Aligned_cols=247 Identities=11% Similarity=0.000 Sum_probs=142.4
Q ss_pred CceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeec-----------------CCceeeEEEEEec-CCCEEEE
Q psy988 23 DFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVE-----------------GQTKLITAANFCE-NGKFAVV 84 (408)
Q Consensus 23 ~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~-----------------~~~~~v~~~~~~~-~~~~l~~ 84 (408)
....++++.+ ++++++++..++.|..|+..++....+.... .....+..+++.+ +++ |+.
T Consensus 19 ~~p~~i~~d~-~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v 96 (322)
T 2fp8_A 19 YAPNSFTFDS-TNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYI 96 (322)
T ss_dssp SCCCCEECCT-TCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEE
T ss_pred CCceEEEEcC-CCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEE
Confidence 4567789999 8887888888899999998776544221100 0123578899997 555 555
Q ss_pred EecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCC-CCCeEEEeeC-----------------CCeEEEEEc
Q psy988 85 GSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMP-GEDKILVTSN-----------------DSRIRLYDL 146 (408)
Q Consensus 85 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~-----------------dg~i~i~d~ 146 (408)
+...+.+..+|..++....... .... ........+++.+ +++..++-.. ++.|..+|.
T Consensus 97 ~d~~~~i~~~d~~~g~~~~~~~--~~~~--~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~ 172 (322)
T 2fp8_A 97 VDCYYHLSVVGSEGGHATQLAT--SVDG--VPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDP 172 (322)
T ss_dssp EETTTEEEEECTTCEECEEEES--EETT--EECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEET
T ss_pred EECCCCEEEEeCCCCEEEEecc--cCCC--CcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeC
Confidence 5555668888876543221111 1000 1113578899999 8865555322 367888888
Q ss_pred cCcccceeecCccccccceEEEEecCCCEEEEe-ecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeC
Q psy988 147 RDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSG-SENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAP 225 (408)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 225 (408)
.+++....... ......+++++++++|+.+ ...+.|..|++..... .. ...+....
T Consensus 173 ~~~~~~~~~~~---~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~---------~~-~~~~~~~~---------- 229 (322)
T 2fp8_A 173 STKETTLLLKE---LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKK---------GT-AEVLVKIP---------- 229 (322)
T ss_dssp TTTEEEEEEEE---ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTT---------TC-EEEEEECS----------
T ss_pred CCCEEEEeccC---CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcC---------Cc-cceEEeCC----------
Confidence 76654322221 1224568999999877666 4567899998753210 00 00000000
Q ss_pred CcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecC----------CCeEEEEEcCCCeeeeEEeeccc--
Q psy988 226 CPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSN----------DSRIRLYDLRDLNLSCKYKGYVN-- 293 (408)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----------d~~i~i~d~~~~~~~~~~~~~~~-- 293 (408)
. +..+++.++|++.++... .+.|..+|.. ++.+..+.....
T Consensus 230 -------------------------g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~ 282 (322)
T 2fp8_A 230 -------------------------N-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFA 282 (322)
T ss_dssp -------------------------S-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTT
T ss_pred -------------------------C-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCc
Confidence 1 334455555554444332 4567788764 666666654321
Q ss_pred eeceeEEEEcCCCCEEEEecCCceEEEeecccc
Q psy988 294 VSSQIKASFSHDGKYIVSGSENQCIYIWKTHHD 326 (408)
Q Consensus 294 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 326 (408)
...+..+++ .++++.++....+.|..+++...
T Consensus 283 ~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 283 GEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp TSCCCEEEE-ETTEEEEECSSCSEEEEEEC---
T ss_pred cccceEEEE-eCCEEEEeecCCCceEEEecccc
Confidence 123555666 46666666667889999988653
No 243
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.20 E-value=1.4e-07 Score=76.28 Aligned_cols=248 Identities=10% Similarity=-0.038 Sum_probs=141.1
Q ss_pred CEEEEEeCCCcEEEEecCCCCcee---eeeecCCceeeEEEEEecCCCEEEEEe-cCCEEEEEeccCCeeeEEEEEeecc
Q psy988 36 RYFLSGSLDGKLRLWNIPDKKVAV---WNEVEGQTKLITAANFCENGKFAVVGS-YDGRCIFYTTDQLKYHTQIHVRSTR 111 (408)
Q Consensus 36 ~~l~t~~~dg~i~iw~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~ 111 (408)
.+|+.+.. +.|+.+++++..... ...+......+..++|++++..|+.+. ..+.|..++.++....... .
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~---~-- 75 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTII---R-- 75 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEE---C--
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEE---E--
Confidence 34555554 578889987654321 011222234678999999766665544 5689999998765432111 0
Q ss_pred ccccCCCCeEEEeeCCCCCeEEEee-CCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeec---CceEEE
Q psy988 112 GKNATGRKISGIEPMPGEDKILVTS-NDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSE---NQCIYI 187 (408)
Q Consensus 112 ~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~i 187 (408)
........+++++++..++.+. ..+.|.++++........... .......++++|++..|+.+.. .+.|..
T Consensus 76 ---~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~--~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~ 150 (267)
T 1npe_A 76 ---QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDT--GLVNPRGIVTDPVRGNLYWTDWNRDNPKIET 150 (267)
T ss_dssp ---TTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS--SCSSEEEEEEETTTTEEEEEECCSSSCEEEE
T ss_pred ---CCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEEC--CCCCccEEEEeeCCCEEEEEECCCCCcEEEE
Confidence 1113678899999777776664 467899999874332222211 1133567899997666665543 356776
Q ss_pred eeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEE
Q psy988 188 WKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILV 267 (408)
Q Consensus 188 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 267 (408)
+++...... .+. ...-.....++++|++..|+.
T Consensus 151 ~~~dg~~~~-------------~~~----------------------------------~~~~~~P~gia~d~~~~~lyv 183 (267)
T 1npe_A 151 SHMDGTNRR-------------ILA----------------------------------QDNLGLPNGLTFDAFSSQLCW 183 (267)
T ss_dssp EETTSCCCE-------------EEE----------------------------------CTTCSCEEEEEEETTTTEEEE
T ss_pred EecCCCCcE-------------EEE----------------------------------ECCCCCCcEEEEcCCCCEEEE
Confidence 665321100 000 001123455666665554444
Q ss_pred -ecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEE-ecCCceEEEeeccccCccccccccCccccceeee
Q psy988 268 -TSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVS-GSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIK 345 (408)
Q Consensus 268 -~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 345 (408)
-...+.|.++|.........+.... ....++.. +..|+. ....+.|..++..++ +.+..+.
T Consensus 184 ~d~~~~~I~~~~~~g~~~~~~~~~~~---~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g------------~~~~~i~ 246 (267)
T 1npe_A 184 VDAGTHRAECLNPAQPGRRKVLEGLQ---YPFAVTSY--GKNLYYTDWKTNSVIAMDLAIS------------KEMDTFH 246 (267)
T ss_dssp EETTTTEEEEEETTEEEEEEEEECCC---SEEEEEEE--TTEEEEEETTTTEEEEEETTTT------------EEEEEEC
T ss_pred EECCCCEEEEEecCCCceEEEecCCC---CceEEEEe--CCEEEEEECCCCeEEEEeCCCC------------CceEEEc
Confidence 4566899999987654433333221 23455554 445544 445689999998876 3344443
Q ss_pred eec-cceEEEEecC
Q psy988 346 AHN-AVVTCAVFAP 358 (408)
Q Consensus 346 ~h~-~~v~~~~~~~ 358 (408)
... .....+++.|
T Consensus 247 ~g~~~~p~gi~~~~ 260 (267)
T 1npe_A 247 PHKQTRLYGITIAL 260 (267)
T ss_dssp CSSCCCCCCEEEEC
T ss_pred cccccccceeeecC
Confidence 222 2356778877
No 244
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.19 E-value=2.2e-08 Score=79.37 Aligned_cols=168 Identities=13% Similarity=0.086 Sum_probs=112.0
Q ss_pred CeeEeEEEeCCc--eEEEEEcCCCCCEEEEEeC--CCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEE-ec
Q psy988 13 KECLCCFQHIDF--VTAICFHPRDDRYFLSGSL--DGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVG-SY 87 (408)
Q Consensus 13 ~~~~~~~~h~~~--v~~~~~sp~~~~~l~t~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~ 87 (408)
.+.+.++.|... ...+.|+| ++.++++.+. ++.|.+.|+.+++......+..+.. ...+++. ++.|+.+ -.
T Consensus 9 ~~vv~~~p~~~~~f~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~f-geGi~~~--g~~lyv~t~~ 84 (266)
T 2iwa_A 9 VEVLNEFPHDPYAFTQGLVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYF-GEGLTLL--NEKLYQVVWL 84 (266)
T ss_dssp EEEEEEEECCTTCCEEEEEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCC-EEEEEEE--TTEEEEEETT
T ss_pred ceEEEEEECCCCCCcccEEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcc-eEEEEEe--CCEEEEEEec
Confidence 456677777754 58999999 7765555553 5799999999999874333333322 2244443 4455544 45
Q ss_pred CCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCcccc---ccc
Q psy988 88 DGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNV---SSQ 164 (408)
Q Consensus 88 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---~~~ 164 (408)
++.+.++|..+.+....+... .. . ...++++++.++++..++.|.++|.++.+....+.-.... ..+
T Consensus 85 ~~~v~viD~~t~~v~~~i~~g-----~~---~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~ 154 (266)
T 2iwa_A 85 KNIGFIYDRRTLSNIKNFTHQ-----MK---D--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRL 154 (266)
T ss_dssp CSEEEEEETTTTEEEEEEECC-----SS---S--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCE
T ss_pred CCEEEEEECCCCcEEEEEECC-----CC---C--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccc
Confidence 789999999998877665432 01 1 1234567888888877899999999998877776543221 124
Q ss_pred eEEEEecCCCEEEEeecCceEEEeeecccee
Q psy988 165 IKASFSHDGKYIVSGSENQCIYIWKTHHDYA 195 (408)
Q Consensus 165 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 195 (408)
..+.|. ++...+....++.|.+.|..++..
T Consensus 155 nele~~-dg~lyvn~~~~~~V~vID~~tg~V 184 (266)
T 2iwa_A 155 NELEYI-NGEVWANIWQTDCIARISAKDGTL 184 (266)
T ss_dssp EEEEEE-TTEEEEEETTSSEEEEEETTTCCE
T ss_pred eeEEEE-CCEEEEecCCCCeEEEEECCCCcE
Confidence 467777 675444444578999999987654
No 245
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.18 E-value=2.4e-08 Score=79.18 Aligned_cols=201 Identities=12% Similarity=0.027 Sum_probs=129.0
Q ss_pred eEEEEEecCCCEEEEEec--CCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEee-CCCeEEEEEc
Q psy988 70 ITAANFCENGKFAVVGSY--DGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTS-NDSRIRLYDL 146 (408)
Q Consensus 70 v~~~~~~~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~ 146 (408)
...+.|++++.+.++.+. ++.|+++|..+++......... ......+++. ++.|+.+. .++.+.++|.
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~-------~~fgeGi~~~--g~~lyv~t~~~~~v~viD~ 93 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDD-------SYFGEGLTLL--NEKLYQVVWLKNIGFIYDR 93 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCT-------TCCEEEEEEE--TTEEEEEETTCSEEEEEET
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCC-------CcceEEEEEe--CCEEEEEEecCCEEEEEEC
Confidence 578999998754444443 5799999999998776654321 0122345554 55666665 4789999999
Q ss_pred cCcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCC
Q psy988 147 RDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPC 226 (408)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 226 (408)
.+.+.+..+... ... ...+++||+.++++..++.|.++|..+...... +.....
T Consensus 94 ~t~~v~~~i~~g-~~~---g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~----------------------I~Vg~~ 147 (266)
T 2iwa_A 94 RTLSNIKNFTHQ-MKD---GWGLATDGKILYGSDGTSILYEIDPHTFKLIKK----------------------HNVKYN 147 (266)
T ss_dssp TTTEEEEEEECC-SSS---CCEEEECSSSEEEECSSSEEEEECTTTCCEEEE----------------------EECEET
T ss_pred CCCcEEEEEECC-CCC---eEEEEECCCEEEEECCCCeEEEEECCCCcEEEE----------------------EEECCC
Confidence 999888877543 111 244677888888877788999999876432211 110000
Q ss_pred cceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeecc-----------cee
Q psy988 227 PELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV-----------NVS 295 (408)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-----------~~~ 295 (408)
++. -..+..+.+. ++..++....++.|.+.|..+++.+..+.... ...
T Consensus 148 ~~p--------------------~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~ 206 (266)
T 2iwa_A 148 GHR--------------------VIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDID 206 (266)
T ss_dssp TEE--------------------CCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCC
T ss_pred Ccc--------------------cccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccC
Confidence 000 0012233333 34334555567899999999999988887421 112
Q ss_pred ceeEEEEcCCCCEE-EEecCCceEEEeecccc
Q psy988 296 SQIKASFSHDGKYI-VSGSENQCIYIWKTHHD 326 (408)
Q Consensus 296 ~v~~~~~s~~~~~l-~~~~~dg~i~iw~~~~~ 326 (408)
....++|+|+++.+ +++...+.+...++...
T Consensus 207 v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 207 VLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp CEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred ceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 45789999998755 55667789999888764
No 246
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.17 E-value=1.7e-07 Score=75.88 Aligned_cols=243 Identities=7% Similarity=-0.009 Sum_probs=143.4
Q ss_pred ceEEEEeccCCeeE-----eEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEe
Q psy988 3 KTVRLWHISRKECL-----CCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFC 76 (408)
Q Consensus 3 g~i~vwd~~~~~~~-----~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~ 76 (408)
+.|+.+++...... ..+. ....+..++|+|.++.++++-..++.|..++..+.... ............+++.
T Consensus 10 ~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~--~~~~~~~~~p~~ia~d 87 (267)
T 1npe_A 10 GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT--TIIRQDLGSPEGIALD 87 (267)
T ss_dssp EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE--EEECTTCCCEEEEEEE
T ss_pred CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcE--EEEECCCCCccEEEEE
Confidence 46788888765421 1222 23467899999933444555555789999999876543 2222223467899999
Q ss_pred cCCCEEEEE-ecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeC---CCeEEEEEccCcccc
Q psy988 77 ENGKFAVVG-SYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSN---DSRIRLYDLRDLNLS 152 (408)
Q Consensus 77 ~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~ 152 (408)
+++..|+.+ ...+.|.+++.+....... ... .......++++|++..|+.+.. .+.|..+++.... .
T Consensus 88 ~~~~~lyv~d~~~~~I~~~~~~g~~~~~~--~~~------~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~ 158 (267)
T 1npe_A 88 HLGRTIFWTDSQLDRIEVAKMDGTQRRVL--FDT------GLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-R 158 (267)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSCSCEEE--ECS------SCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-C
T ss_pred ecCCeEEEEECCCCEEEEEEcCCCCEEEE--EEC------CCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-c
Confidence 976555554 4567999999875432111 110 1135688999997777776654 3688888876432 2
Q ss_pred eeecCccccccceEEEEecCCCEEEEee-cCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceee
Q psy988 153 CKYKGYVNVSSQIKASFSHDGKYIVSGS-ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELII 231 (408)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 231 (408)
..+.. ........++++++++.|+.+. ..+.|..+|......... ...
T Consensus 159 ~~~~~-~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~------------~~~------------------ 207 (267)
T 1npe_A 159 RILAQ-DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKV------------LEG------------------ 207 (267)
T ss_dssp EEEEC-TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEE------------EEC------------------
T ss_pred EEEEE-CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEE------------ecC------------------
Confidence 22211 1223466799999877766554 457899988753211000 000
Q ss_pred eecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCC
Q psy988 232 AQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGK 307 (408)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 307 (408)
...+..++.. ++..+++....+.|.++|..+++.+..+..... .....+++.|++.
T Consensus 208 ------------------~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~-~~p~gi~~~~~~~ 263 (267)
T 1npe_A 208 ------------------LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQ-TRLYGITIALSQC 263 (267)
T ss_dssp ------------------CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSC-CCCCCEEEECSCC
T ss_pred ------------------CCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEccccc-cccceeeecCccC
Confidence 0011223322 223344445668999999999998888764321 1244677777653
No 247
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=99.15 E-value=1.1e-07 Score=85.48 Aligned_cols=311 Identities=12% Similarity=0.073 Sum_probs=169.5
Q ss_pred CceEEEEec-cCCeeEeEEEeCCc------------eEEEEEcCCCCCE----EEEEeCCCcEEEEecCCCCceeeeeec
Q psy988 2 DKTVRLWHI-SRKECLCCFQHIDF------------VTAICFHPRDDRY----FLSGSLDGKLRLWNIPDKKVAVWNEVE 64 (408)
Q Consensus 2 Dg~i~vwd~-~~~~~~~~~~h~~~------------v~~~~~sp~~~~~----l~t~~~dg~i~iw~~~~~~~~~~~~~~ 64 (408)
++.|.-+|. .+|+.+-.+..... ...++++| .+.. ++.++.|+.|.-+|..+++..-...+.
T Consensus 72 ~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p-~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~ 150 (599)
T 1w6s_A 72 PNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWP-GDGKTPALILKTQLDGNVAALNAETGETVWKVENS 150 (599)
T ss_dssp TTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEEC-CCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECC
T ss_pred CCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEe-cCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCC
Confidence 567888899 89998877763321 12356654 3334 778888999999999999876333332
Q ss_pred CCce--eeEEEEEecCCCEEEEEe------cCCEEEEEeccCCeeeEEEEEeecccc-----------------------
Q psy988 65 GQTK--LITAANFCENGKFAVVGS------YDGRCIFYTTDQLKYHTQIHVRSTRGK----------------------- 113 (408)
Q Consensus 65 ~~~~--~v~~~~~~~~~~~l~~~~------~dg~i~iw~~~~~~~~~~~~~~~~~~~----------------------- 113 (408)
.+.. .+.+--.-.++ .+++++ .+|.|+.+|.++++.............
T Consensus 151 ~~~~~~~~~ssP~v~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~t 229 (599)
T 1w6s_A 151 DIKVGSTLTIAPYVVKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGT 229 (599)
T ss_dssp CGGGTCBCCSCCEEETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHT
T ss_pred CCCccceeecCCEEECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccccccccccccc
Confidence 2110 11110011244 455554 379999999999988766553321100
Q ss_pred ------ccCCCCe-EEEeeCCCCCeEEEeeCC----------------CeEEEEEccCcccceeecCccccc-------c
Q psy988 114 ------NATGRKI-SGIEPMPGEDKILVTSND----------------SRIRLYDLRDLNLSCKYKGYVNVS-------S 163 (408)
Q Consensus 114 ------~~~~~~v-~~~~~~~~~~~l~~~~~d----------------g~i~i~d~~~~~~~~~~~~~~~~~-------~ 163 (408)
......+ ..+++.+....++.+..+ +.|.-+|.++++.+-.++...+.. .
T Consensus 230 w~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~ 309 (599)
T 1w6s_A 230 WEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNV 309 (599)
T ss_dssp SSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCC
T ss_pred CCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCc
Confidence 0000001 134556677788877654 389999999999887765433211 1
Q ss_pred ceEEEEe-cCC---CEEEEeecCceEEEeeeccceeeeeecccC-----------CCcccccc-----ccccce------
Q psy988 164 QIKASFS-HDG---KYIVSGSENQCIYIWKTHHDYAKFSSVRRD-----------RNDFWEGI-----KAHNAV------ 217 (408)
Q Consensus 164 ~~~~~~~-~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----------~~~~~~~~-----~~~~~~------ 217 (408)
..-+... .+| ..++.++.+|.++++|.++++......... ...++... ......
T Consensus 310 p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~ 389 (599)
T 1w6s_A 310 MMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSA 389 (599)
T ss_dssp CEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCT
T ss_pred cEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCc
Confidence 1112222 467 467778899999999998887665432111 00000000 000000
Q ss_pred -----EEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCe------EEE--ec------CCCeEEEEE
Q psy988 218 -----VTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDK------ILV--TS------NDSRIRLYD 278 (408)
Q Consensus 218 -----v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~------l~~--~~------~d~~i~i~d 278 (408)
-..++++|+...+++........ .... .+.+....-+ +.. .+ ..|.|..||
T Consensus 390 ~Gg~~w~~~a~dp~~~~~yv~~~~~~~~---~~~~-------~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D 459 (599)
T 1w6s_A 390 MGYHNQGHDSYDPKRELFFMGINHICMD---WEPF-------MLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYN 459 (599)
T ss_dssp TCSSCSCBCEEETTTTEEEEEEECEEEE---EEEC-------CCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEEC
T ss_pred ccccCCCCccCCCCCCEEEEecccccee---eecc-------cccccCCcceecccceeccCCcCCcccCCCcCeEEEEE
Confidence 01345666655554321110000 0000 0000000000 111 01 458899999
Q ss_pred cCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccC
Q psy988 279 LRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDY 327 (408)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 327 (408)
+.+++.+-+.+... +...-.+...+.+++.++.||.++.||..+++
T Consensus 460 ~~tG~~~W~~~~~~---~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~ 505 (599)
T 1w6s_A 460 AITGDYKWEKMERF---AVWGGTMATAGDLVFYGTLDGYLKARDSDTGD 505 (599)
T ss_dssp TTTCCEEEEEEESS---CCCSBCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred CCCCCEEeEecCCC---CccCcceEecCCEEEEECCCCeEEEEECCCCC
Confidence 99999877665321 11111223357788889999999999999984
No 248
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.13 E-value=4.6e-08 Score=76.53 Aligned_cols=166 Identities=11% Similarity=0.120 Sum_probs=111.1
Q ss_pred eeEeEEEeCCce--EEEEEcCCCCCEEEEEeCCC--cEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEe-cC
Q psy988 14 ECLCCFQHIDFV--TAICFHPRDDRYFLSGSLDG--KLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGS-YD 88 (408)
Q Consensus 14 ~~~~~~~h~~~v--~~~~~sp~~~~~l~t~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d 88 (408)
+.+.++.|...- ..+.|+ ++.++.+.+.+| .|+.+|+++++......+.. ........++++.|.... .+
T Consensus 32 ~vv~~~phd~~~ftqGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~---~~FgeGit~~g~~ly~ltw~~ 106 (262)
T 3nol_A 32 QIVHSYPHDTKAFTEGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK---RYFGEGISDWKDKIVGLTWKN 106 (262)
T ss_dssp EEEEEEECCTTCEEEEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT---TCCEEEEEEETTEEEEEESSS
T ss_pred EEEEEecCCCCcccceEEEE--CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC---ccceeEEEEeCCEEEEEEeeC
Confidence 455666676554 889998 467777777766 89999999999875333332 233322333455555554 57
Q ss_pred CEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCcccc---ccce
Q psy988 89 GRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNV---SSQI 165 (408)
Q Consensus 89 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---~~~~ 165 (408)
+.+.++|.++.+....+.... ....++++++.|+.+..++.|.++|..+.+....+.-.... ..+.
T Consensus 107 ~~v~v~D~~t~~~~~ti~~~~-----------eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lN 175 (262)
T 3nol_A 107 GLGFVWNIRNLRQVRSFNYDG-----------EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELN 175 (262)
T ss_dssp SEEEEEETTTCCEEEEEECSS-----------CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEE
T ss_pred CEEEEEECccCcEEEEEECCC-----------CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccc
Confidence 899999999998877765421 11233457888888877789999999998887776543221 2233
Q ss_pred EEEEecCCCEEEEeecCceEEEeeeccceee
Q psy988 166 KASFSHDGKYIVSGSENQCIYIWKTHHDYAK 196 (408)
Q Consensus 166 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 196 (408)
.+.+. +|+..+..-.+..|.+.|.+++...
T Consensus 176 ELe~~-~G~lyan~w~~~~I~vIDp~tG~V~ 205 (262)
T 3nol_A 176 ELEWV-DGEIFANVWQTNKIVRIDPETGKVT 205 (262)
T ss_dssp EEEEE-TTEEEEEETTSSEEEEECTTTCBEE
T ss_pred eeEEE-CCEEEEEEccCCeEEEEECCCCcEE
Confidence 46665 6765554546789999999877644
No 249
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.09 E-value=2.9e-09 Score=89.31 Aligned_cols=263 Identities=14% Similarity=0.126 Sum_probs=148.1
Q ss_pred EEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEE
Q psy988 27 AICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIH 106 (408)
Q Consensus 27 ~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 106 (408)
++.... ++ .|..++.++.|..|| .+++.. .........+.++...++|. +..++.+ +..+|. +++......
T Consensus 24 ~~~~d~-~g-~l~v~t~~~~l~~~d-~~g~~~--~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~ 94 (330)
T 3hxj_A 24 SPILAK-NG-TIYLGSSNKNLYAIN-TDGSVK--WFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFD 94 (330)
T ss_dssp CCEECT-TS-CEECSSTTTTTEEEC-TTSCEE--ESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSC
T ss_pred CceEcc-CC-eEEEEcCCCEEEEEC-CCCcEE--EEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEE
Confidence 344544 44 467777889999999 777754 23333445567777766765 4445444 888875 333221111
Q ss_pred EeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecCceEE
Q psy988 107 VRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIY 186 (408)
Q Consensus 107 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 186 (408)
.. ........+. +..+++++.++.|..+|.. ++.......... .+.++...+++. ++.++.++.|.
T Consensus 95 ~~--------~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~--~~~~~~~~~~g~-l~vgt~~~~l~ 160 (330)
T 3hxj_A 95 TK--------KAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKA--IYATPIVSEDGT-IYVGSNDNYLY 160 (330)
T ss_dssp C-------------CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSC--CCSCCEECTTSC-EEEECTTSEEE
T ss_pred CC--------CCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCc--eeeeeEEcCCCE-EEEEcCCCEEE
Confidence 00 0111122222 5678888888999999988 665554443222 233455666665 66677788899
Q ss_pred EeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEE
Q psy988 187 IWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKIL 266 (408)
Q Consensus 187 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 266 (408)
.+|.. +..... .. .....+.++...+++..++
T Consensus 161 ~~d~~-g~~~~~------------~~-----------------------------------~~~~~~~~~~~d~~g~l~v 192 (330)
T 3hxj_A 161 AINPD-GTEKWR------------FK-----------------------------------TNDAITSAASIGKDGTIYF 192 (330)
T ss_dssp EECTT-SCEEEE------------EE-----------------------------------CSSCCCSCCEECTTCCEEE
T ss_pred EECCC-CCEeEE------------Ee-----------------------------------cCCCceeeeEEcCCCEEEE
Confidence 99875 322111 00 0011223344445555444
Q ss_pred EecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeee
Q psy988 267 VTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKA 346 (408)
Q Consensus 267 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (408)
++ +.|..+| .+++....+.... ..+.++...++|.+. .++.++.+..++.... .+.....
T Consensus 193 -~t--~~l~~~d-~~g~~~~~~~~~~--~~~~~~~~~~~g~l~-v~t~~~gl~~~~~~g~-------------~~~~~~~ 252 (330)
T 3hxj_A 193 -GS--DKVYAIN-PDGTEKWNFYAGY--WTVTRPAISEDGTIY-VTSLDGHLYAINPDGT-------------EKWRFKT 252 (330)
T ss_dssp -ES--SSEEEEC-TTSCEEEEECCSS--CCCSCCEECTTSCEE-EEETTTEEEEECTTSC-------------EEEEEEC
T ss_pred -Ee--CEEEEEC-CCCcEEEEEccCC--cceeceEECCCCeEE-EEcCCCeEEEECCCCC-------------EeEEeeC
Confidence 44 7799999 7777665555432 356677888887544 4556777888874321 2222222
Q ss_pred eccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCCC
Q psy988 347 HNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKPK 398 (408)
Q Consensus 347 h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 398 (408)
....+.++...+ ++ .|..++.+|.|..+|. +++.
T Consensus 253 ~~~~~~~~~~~~----------------~g-~l~v~t~~ggl~~~d~-~g~~ 286 (330)
T 3hxj_A 253 GKRIESSPVIGN----------------TD-TIYFGSYDGHLYAINP-DGTE 286 (330)
T ss_dssp SSCCCSCCEECT----------------TS-CEEEECTTCEEEEECT-TSCE
T ss_pred CCCccccceEcC----------------CC-eEEEecCCCCEEEECC-CCcE
Confidence 222333445554 45 4556677888888885 4443
No 250
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=99.09 E-value=4.7e-08 Score=89.92 Aligned_cols=118 Identities=12% Similarity=0.149 Sum_probs=76.9
Q ss_pred EEEEcCCCCCEEEEEeCCC-----------cEEEEecCCCCceeeeeecC-CceeeEEEEEecCCCEEEEEec-CCEEEE
Q psy988 27 AICFHPRDDRYFLSGSLDG-----------KLRLWNIPDKKVAVWNEVEG-QTKLITAANFCENGKFAVVGSY-DGRCIF 93 (408)
Q Consensus 27 ~~~~sp~~~~~l~t~~~dg-----------~i~iw~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~-dg~i~i 93 (408)
++++.|.++++++.|+.+. .+.+||..+++......+.. +.....++++..+++.++.|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 5566654678888887543 58899999887654433322 2233345677789999999884 468999
Q ss_pred EeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEee-CC-----CeEEEEEccCccc
Q psy988 94 YTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTS-ND-----SRIRLYDLRDLNL 151 (408)
Q Consensus 94 w~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d-----g~i~i~d~~~~~~ 151 (408)
||..+.+.... ..... ...-.+++..++++.++.|+ .+ ..+.+||..+.+-
T Consensus 270 yd~~t~~W~~~---~~~~~----~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W 326 (656)
T 1k3i_A 270 YDSSSDSWIPG---PDMQV----ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW 326 (656)
T ss_dssp EEGGGTEEEEC---CCCSS----CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred ecCcCCceeEC---CCCCc----cccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcc
Confidence 99987754322 11111 11223455667899888888 34 5699999987653
No 251
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=99.09 E-value=5.1e-08 Score=81.38 Aligned_cols=245 Identities=13% Similarity=0.076 Sum_probs=137.3
Q ss_pred eeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeecc------------ccccCCCCeEEEeeCCCCCeEEEee
Q psy988 69 LITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTR------------GKNATGRKISGIEPMPGEDKILVTS 136 (408)
Q Consensus 69 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~------------~~~~~~~~v~~~~~~~~~~~l~~~~ 136 (408)
...+++|.++|++++++..++.|..|+..+..... +...... ........+.++++.+++..|+++.
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d 98 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVD-FAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD 98 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEE-EEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEE-EecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE
Confidence 45678899999878888889999999987654321 1111000 0000113578899997445666665
Q ss_pred CCCeEEEEEccCcccceeecCc---cccccceEEEEec-CCCEEEEeec-----------------CceEEEeeecccee
Q psy988 137 NDSRIRLYDLRDLNLSCKYKGY---VNVSSQIKASFSH-DGKYIVSGSE-----------------NQCIYIWKTHHDYA 195 (408)
Q Consensus 137 ~dg~i~i~d~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~l~~~~~-----------------dg~i~i~d~~~~~~ 195 (408)
..+.|..+|..++... .+... ........+++.+ +|+..++-.. ++.|..||..++..
T Consensus 99 ~~~~i~~~d~~~g~~~-~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~ 177 (322)
T 2fp8_A 99 CYYHLSVVGSEGGHAT-QLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET 177 (322)
T ss_dssp TTTEEEEECTTCEECE-EEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE
T ss_pred CCCCEEEEeCCCCEEE-EecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEE
Confidence 5566888887755432 22111 1112345677888 7765544322 13344444322110
Q ss_pred eeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEe-cCCCeE
Q psy988 196 KFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVT-SNDSRI 274 (408)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i 274 (408)
. . ....-.....++++|+++.|+++ ...+.|
T Consensus 178 ~-----------------------~-------------------------~~~~~~~p~gia~~~dg~~lyv~d~~~~~I 209 (322)
T 2fp8_A 178 T-----------------------L-------------------------LLKELHVPGGAEVSADSSFVLVAEFLSHQI 209 (322)
T ss_dssp E-----------------------E-------------------------EEEEESCCCEEEECTTSSEEEEEEGGGTEE
T ss_pred E-----------------------E-------------------------eccCCccCcceEECCCCCEEEEEeCCCCeE
Confidence 0 0 00001234557788888866555 566899
Q ss_pred EEEEcCCCe--eeeEEeeccceeceeEEEEcCCCCEEEEecC----------CceEEEeeccccCccccccccCccccce
Q psy988 275 RLYDLRDLN--LSCKYKGYVNVSSQIKASFSHDGKYIVSGSE----------NQCIYIWKTHHDYAKFSSVRRDRNDFWE 342 (408)
Q Consensus 275 ~i~d~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----------dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 342 (408)
.+|++.... ....+... .. ...++++++|++.++... .+.|..++... +.+.
T Consensus 210 ~~~~~~~~~~~~~~~~~~~--~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G-------------~~~~ 273 (322)
T 2fp8_A 210 VKYWLEGPKKGTAEVLVKI--PN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFG-------------NILE 273 (322)
T ss_dssp EEEESSSTTTTCEEEEEEC--SS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTS-------------CEEE
T ss_pred EEEECCCCcCCccceEEeC--CC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCCC-------------CEEE
Confidence 999987521 11122211 11 557899999987766544 45677777542 2233
Q ss_pred eeeee----ccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCC
Q psy988 343 GIKAH----NAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTK 396 (408)
Q Consensus 343 ~~~~h----~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 396 (408)
.+... ...++++++ . +++++++....+.|..+++...
T Consensus 274 ~~~~~~g~~~~~~~~~~~-~----------------~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 274 VIPLPPPFAGEHFEQIQE-H----------------DGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp EEECCTTTTTSCCCEEEE-E----------------TTEEEEECSSCSEEEEEEC---
T ss_pred EEECCCCCccccceEEEE-e----------------CCEEEEeecCCCceEEEecccc
Confidence 33222 134566666 3 6777777777889999998644
No 252
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.09 E-value=5.8e-08 Score=75.96 Aligned_cols=187 Identities=10% Similarity=0.066 Sum_probs=119.2
Q ss_pred eEEEEEecCCCEEEEEecCC--EEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEee-CCCeEEEEEc
Q psy988 70 ITAANFCENGKFAVVGSYDG--RCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTS-NDSRIRLYDL 146 (408)
Q Consensus 70 v~~~~~~~~~~~l~~~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~ 146 (408)
...+.|+ ++.+..+.+.+| .|+++|+++++......... .....-..++++.|+... .++.+.+||.
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~---------~~FgeGit~~g~~ly~ltw~~~~v~v~D~ 114 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK---------RYFGEGISDWKDKIVGLTWKNGLGFVWNI 114 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT---------TCCEEEEEEETTEEEEEESSSSEEEEEET
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC---------ccceeEEEEeCCEEEEEEeeCCEEEEEEC
Confidence 4788888 677677777766 89999999998876664321 222222223456666665 4789999999
Q ss_pred cCcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCC
Q psy988 147 RDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPC 226 (408)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 226 (408)
.+.+.+.++...... ..++++++.|+.+..++.|.++|..+...... +....+
T Consensus 115 ~t~~~~~ti~~~~eG-----~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~----------------------I~V~~~ 167 (262)
T 3nol_A 115 RNLRQVRSFNYDGEG-----WGLTHNDQYLIMSDGTPVLRFLDPESLTPVRT----------------------ITVTAH 167 (262)
T ss_dssp TTCCEEEEEECSSCC-----CCEEECSSCEEECCSSSEEEEECTTTCSEEEE----------------------EECEET
T ss_pred ccCcEEEEEECCCCc-----eEEecCCCEEEEECCCCeEEEEcCCCCeEEEE----------------------EEeccC
Confidence 999988887653321 34456788888877778899999876432211 111000
Q ss_pred cceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeecc----------ceec
Q psy988 227 PELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV----------NVSS 296 (408)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~----------~~~~ 296 (408)
++.+ ..+..+.+. +|+.++....++.|.+.|..+++.+..+.... ....
T Consensus 168 g~~~--------------------~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~v 226 (262)
T 3nol_A 168 GEEL--------------------PELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDV 226 (262)
T ss_dssp TEEC--------------------CCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCC
T ss_pred Cccc--------------------cccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCc
Confidence 0000 011122232 44445555677899999999999988876431 1124
Q ss_pred eeEEEEcCCCCEEEEecC
Q psy988 297 QIKASFSHDGKYIVSGSE 314 (408)
Q Consensus 297 v~~~~~s~~~~~l~~~~~ 314 (408)
...++|+|+++.|++.+.
T Consensus 227 lNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 227 LNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EEEEEEETTTTEEEEEET
T ss_pred eEEEEEcCCCCEEEEECC
Confidence 578999998887776654
No 253
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=99.08 E-value=1.7e-07 Score=84.26 Aligned_cols=316 Identities=10% Similarity=0.054 Sum_probs=164.7
Q ss_pred CceEEEEec-cCCeeEeEEEeCCc--e----------EEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCce
Q psy988 2 DKTVRLWHI-SRKECLCCFQHIDF--V----------TAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTK 68 (408)
Q Consensus 2 Dg~i~vwd~-~~~~~~~~~~h~~~--v----------~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 68 (408)
++.|.-+|. .+|+.+-.+..... + ..+.. .+..++.++.|+.+..+|..+++..-...+..+..
T Consensus 72 ~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~ 148 (571)
T 2ad6_A 72 PNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY---GAGQIVKKQANGHLLALDAKTGKINWEVEVCDPKV 148 (571)
T ss_dssp TTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE---ETTEEEEECTTSEEEEEETTTCCEEEEEECCCGGG
T ss_pred CCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE---ECCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCc
Confidence 567888898 89998877653221 0 12233 24567788889999999999998764333332211
Q ss_pred --eeEEEEEecCCCEEEEEec------CCEEEEEeccCCeeeEEEEEeecccc---------------------------
Q psy988 69 --LITAANFCENGKFAVVGSY------DGRCIFYTTDQLKYHTQIHVRSTRGK--------------------------- 113 (408)
Q Consensus 69 --~v~~~~~~~~~~~l~~~~~------dg~i~iw~~~~~~~~~~~~~~~~~~~--------------------------- 113 (408)
.+.+--.-.++ .+++++. ++.|..+|.++++.............
T Consensus 149 ~~~~~~~P~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~ 227 (571)
T 2ad6_A 149 GSTLTQAPFVAKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGD 227 (571)
T ss_dssp TCBCCSCCEEETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTT
T ss_pred cceeccCCEEECC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCccc
Confidence 11110001144 4555554 79999999999988766553221100
Q ss_pred ---ccCCCCeEEEeeCCCCCeEEEeeCC----------------CeEEEEEccCcccceeecCccc-------cccceEE
Q psy988 114 ---NATGRKISGIEPMPGEDKILVTSND----------------SRIRLYDLRDLNLSCKYKGYVN-------VSSQIKA 167 (408)
Q Consensus 114 ---~~~~~~v~~~~~~~~~~~l~~~~~d----------------g~i~i~d~~~~~~~~~~~~~~~-------~~~~~~~ 167 (408)
.........+++.++...++.+..+ +.|..+|.++++.+-.++...+ .....-+
T Consensus 228 ~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~ 307 (571)
T 2ad6_A 228 AWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLT 307 (571)
T ss_dssp GGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEE
T ss_pred ceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEE
Confidence 0000001234566666677766532 3699999999998776653221 1112212
Q ss_pred EEecCCC---EEEEeecCceEEEeeeccceeeeeecccCCC-----------cccccc--c---cccceE----------
Q psy988 168 SFSHDGK---YIVSGSENQCIYIWKTHHDYAKFSSVRRDRN-----------DFWEGI--K---AHNAVV---------- 218 (408)
Q Consensus 168 ~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-----------~~~~~~--~---~~~~~v---------- 218 (408)
....+|+ .++.++.+|.++++|..+++........... .++..- . .....+
T Consensus 308 ~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~ 387 (571)
T 2ad6_A 308 DQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHN 387 (571)
T ss_dssp EEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSC
T ss_pred ecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccC
Confidence 3334774 5777888999999999887665432211100 000000 0 000000
Q ss_pred -EEEEEeCCcceeeeecCCCCCCC-ce-eeecCCC---ceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeecc
Q psy988 219 -TCAVFAPCPELIIAQMEPDKSES-TG-YVLNATG---RKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV 292 (408)
Q Consensus 219 -~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~---~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 292 (408)
..++++|+...+.+........- .. ....... ..-..+..+|.+. ....++.|..||+.+++.+-++....
T Consensus 388 w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~---~~~~~g~l~a~D~~tG~~~W~~~~~~ 464 (571)
T 2ad6_A 388 QGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGP---TKKEMGQIRAFDLTTGKAKWTKWEKF 464 (571)
T ss_dssp SCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTST---TSCCCEEEEEECTTTCCEEEEEEESS
T ss_pred CCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCcccc---CCCCCCeEEEEECCCCCEEEEecCCC
Confidence 12344554444433211000000 00 0000000 0000000011100 00246889999999999877765432
Q ss_pred ceeceeEEEEcCCCCEEEEecCCceEEEeeccccC
Q psy988 293 NVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDY 327 (408)
Q Consensus 293 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 327 (408)
. +....+...+..++.++.||.|+.+|..+++
T Consensus 465 ~---~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~ 496 (571)
T 2ad6_A 465 A---AWGGTLYTKGGLVWYATLDGYLKALDNKDGK 496 (571)
T ss_dssp C---CCSBCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred C---ccceeEEECCCEEEEEcCCCeEEEEECCCCC
Confidence 1 1122233356778889999999999999874
No 254
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=99.07 E-value=7e-07 Score=80.36 Aligned_cols=192 Identities=16% Similarity=0.097 Sum_probs=112.9
Q ss_pred eEEEEeccCCeeEeEEEeCCce----------EEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCce--eeE
Q psy988 4 TVRLWHISRKECLCCFQHIDFV----------TAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTK--LIT 71 (408)
Q Consensus 4 ~i~vwd~~~~~~~~~~~h~~~v----------~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~--~v~ 71 (408)
.|.-+|.++|+.+-.+...... ..+++ .+..++.++.|+.|.-+|.++++..-......+.. .+.
T Consensus 79 ~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~---~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~ 155 (582)
T 1flg_A 79 RLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI---YGDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMT 155 (582)
T ss_dssp EEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE---ETTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCC
T ss_pred CEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE---ECCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccc
Confidence 3777888899988777632221 12233 24467788889999999999998763333322110 111
Q ss_pred -EEEEec---CCC-EEEEEec------CCEEEEEeccCCeeeEEEEEeeccc------------cc--------------
Q psy988 72 -AANFCE---NGK-FAVVGSY------DGRCIFYTTDQLKYHTQIHVRSTRG------------KN-------------- 114 (408)
Q Consensus 72 -~~~~~~---~~~-~l~~~~~------dg~i~iw~~~~~~~~~~~~~~~~~~------------~~-------------- 114 (408)
...... +|+ .+++++. +|.|.-+|..+++............ ..
T Consensus 156 ~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g 235 (582)
T 1flg_A 156 GAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTG 235 (582)
T ss_dssp SCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTS
T ss_pred cCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccCCCccccccc
Confidence 111111 233 5666543 7899999999988776543210000 00
Q ss_pred -------cCCCCeEEEeeCCCCCeEEEeeC--------------------C----CeEEEEEccCcccceeecCcccc--
Q psy988 115 -------ATGRKISGIEPMPGEDKILVTSN--------------------D----SRIRLYDLRDLNLSCKYKGYVNV-- 161 (408)
Q Consensus 115 -------~~~~~v~~~~~~~~~~~l~~~~~--------------------d----g~i~i~d~~~~~~~~~~~~~~~~-- 161 (408)
.....-..+++.|....++++.. | +.|.-+|.++++.+-.++...+.
T Consensus 236 ~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~w 315 (582)
T 1flg_A 236 KVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAW 315 (582)
T ss_dssp BCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCS
T ss_pred cccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcc
Confidence 00001123556677777777653 2 58999999999988776542211
Q ss_pred -----ccceEEEEe-cCCC---EEEEeecCceEEEeeeccceeeee
Q psy988 162 -----SSQIKASFS-HDGK---YIVSGSENQCIYIWKTHHDYAKFS 198 (408)
Q Consensus 162 -----~~~~~~~~~-~~~~---~l~~~~~dg~i~i~d~~~~~~~~~ 198 (408)
....-+... .+|+ .++.++.+|.++++|.++++....
T Consensus 316 d~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~ 361 (582)
T 1flg_A 316 DFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNA 361 (582)
T ss_dssp CCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred cccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecc
Confidence 111112222 4674 688899999999999988776543
No 255
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=99.07 E-value=1e-06 Score=72.85 Aligned_cols=242 Identities=11% Similarity=0.073 Sum_probs=137.1
Q ss_pred eeEeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecC--CEE
Q psy988 14 ECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYD--GRC 91 (408)
Q Consensus 14 ~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i 91 (408)
+.+..+........++|+| +++++++-..++.|..||..+. ... ... ....+..+++.++|+++++.... ..|
T Consensus 23 ~~~~~~p~~~~pegia~~~-~g~lyv~d~~~~~I~~~d~~g~-~~~--~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v 97 (306)
T 2p4o_A 23 KIITSFPVNTFLENLASAP-DGTIFVTNHEVGEIVSITPDGN-QQI--HAT-VEGKVSGLAFTSNGDLVATGWNADSIPV 97 (306)
T ss_dssp EEEEEECTTCCEEEEEECT-TSCEEEEETTTTEEEEECTTCC-EEE--EEE-CSSEEEEEEECTTSCEEEEEECTTSCEE
T ss_pred eEeEeCCCCCCcceEEECC-CCCEEEEeCCCCeEEEECCCCc-eEE--EEe-CCCCceeEEEcCCCcEEEEeccCCcceE
Confidence 3444443336788999999 8887777767899999998754 321 222 23468899999999965554332 246
Q ss_pred EEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCccc-ceee-------cCcccccc
Q psy988 92 IFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNL-SCKY-------KGYVNVSS 163 (408)
Q Consensus 92 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~-------~~~~~~~~ 163 (408)
..++..+++....... .. ......++..+++..+++-..++.|+.+|..+++. +... ........
T Consensus 98 ~~~d~~~g~~~~~~~~---~~----~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~ 170 (306)
T 2p4o_A 98 VSLVKSDGTVETLLTL---PD----AIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPA 170 (306)
T ss_dssp EEEECTTSCEEEEEEC---TT----CSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCS
T ss_pred EEEcCCCCeEEEEEeC---CC----ccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCc
Confidence 6677666654322211 11 12234455455443333334578999999865421 1100 00011112
Q ss_pred ceEEEEecCCCEEEEee-cCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCc
Q psy988 164 QIKASFSHDGKYIVSGS-ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSEST 242 (408)
Q Consensus 164 ~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 242 (408)
...+ ++++++|+.+. ..+.|..|++..... + ... .+. .
T Consensus 171 pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~---------------~-~~~-~~~--~-------------------- 209 (306)
T 2p4o_A 171 ANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDK---------------P-GEP-EIF--V-------------------- 209 (306)
T ss_dssp EEEE--EEETTEEEEEETTTTEEEEEEBCTTSC---------------B-CCC-EEE--E--------------------
T ss_pred CCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCC---------------C-Ccc-EEE--e--------------------
Confidence 3334 78887766654 467888888753100 0 000 000 0
Q ss_pred eeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEc---CCCCEEEEecCC
Q psy988 243 GYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFS---HDGKYIVSGSEN 315 (408)
Q Consensus 243 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s---~~~~~l~~~~~d 315 (408)
....+..++++++|+++++....+.|.++|.. ++...............+++|. |+++.|++.+..
T Consensus 210 ------~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 210 ------EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp ------ESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred ------ccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCC
Confidence 00134557778888777776777889999975 5543222222222357789998 888877766543
No 256
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.07 E-value=7.1e-06 Score=77.28 Aligned_cols=346 Identities=9% Similarity=0.058 Sum_probs=192.7
Q ss_pred eEEEEeccCCeeEeEEE--------eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeee-------e-----
Q psy988 4 TVRLWHISRKECLCCFQ--------HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNE-------V----- 63 (408)
Q Consensus 4 ~i~vwd~~~~~~~~~~~--------h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~-------~----- 63 (408)
-+.+||..+++...... ....|.++...+ ++. |..|+..+-|.+++..++....... .
T Consensus 231 Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 308 (781)
T 3v9f_A 231 GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLK-DNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNY 308 (781)
T ss_dssp EEEEEETTTTEEEC-----------CCCCEEEEEECT-TSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTT
T ss_pred cHheECCCCCcEEEEEcCCCccccccCceEEEEEECC-CCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCC
Confidence 36677776665543321 235699999887 665 5556665678899987765432211 0
Q ss_pred cCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEee-ccccccCCCCeEEEeeCCCCCeEEEeeCCCeEE
Q psy988 64 EGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRS-TRGKNATGRKISGIEPMPGEDKILVTSNDSRIR 142 (408)
Q Consensus 64 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 142 (408)
.-....|.++...++|. |-.|+.++-|..++.............. ..........|.++...+++ .|.+|+.++-|.
T Consensus 309 ~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g-~lWigt~~~Gl~ 386 (781)
T 3v9f_A 309 SLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQG-KLWIGTDGGGIN 386 (781)
T ss_dssp SBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTS-CEEEEEBSSCEE
T ss_pred CCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCC-CEEEEeCCCcEE
Confidence 11245689998888876 6667777778888877554322111000 00111123568888887766 466777666799
Q ss_pred EEEccCcccceeec-CccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEE
Q psy988 143 LYDLRDLNLSCKYK-GYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCA 221 (408)
Q Consensus 143 i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 221 (408)
.||..++....... .......+.++...+++. |.+|+.++-+..+|..++..... ... ......|.++
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~--~~~--------~~~~~~v~~i 455 (781)
T 3v9f_A 387 VFENGKRVAIYNKENRELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKFQII--ELE--------KNELLDVRVF 455 (781)
T ss_dssp EEETTEEEEECC-----CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEEEEC--CST--------TTCCCCEEEE
T ss_pred EEECCCCeEEEccCCCCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcEEEe--ccC--------CCCCCeEEEE
Confidence 99987654322111 011223466777777775 55576666788888765432110 000 1234567888
Q ss_pred EEeCCcceeeeecCC-----CCCCCceeeecC-----CCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeec
Q psy988 222 VFAPCPELIIAQMEP-----DKSESTGYVLNA-----TGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGY 291 (408)
Q Consensus 222 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 291 (408)
...+++...+..... ............ ....|.++...++|...+....+| +..||..+++.. .+...
T Consensus 456 ~~d~~g~lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~~-~~~~~ 533 (781)
T 3v9f_A 456 YEDKNKKIWIGTHAGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLVR-KFNQY 533 (781)
T ss_dssp EECTTSEEEEEETTEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEEE-EECTT
T ss_pred EECCCCCEEEEECCceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeEE-EccCC
Confidence 888877766554311 001111111111 135788898898888666544345 777887765433 33211
Q ss_pred c--ceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeee-eccceEEEEecCCchhhhhccC
Q psy988 292 V--NVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKA-HNAVVTCAVFAPCPELIIAQME 368 (408)
Q Consensus 292 ~--~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~ 368 (408)
. ....|.++...++|++.++.. +|.|..||..++... ......+ ....|.++...+
T Consensus 534 ~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~~----------~~~~~~gl~~~~i~~i~~d~---------- 592 (781)
T 3v9f_A 534 EGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFDYQ----------VFQRKEGLPNTHIRAISEDK---------- 592 (781)
T ss_dssp TTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCCCE----------EECGGGTCSCCCCCEEEECS----------
T ss_pred CCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCcEE----------EccccCCCCCceEEEEEECC----------
Confidence 1 123578888889988766554 676588887664211 0000001 123577888887
Q ss_pred CCCCCCcccEEEEEecCCeEEEEeCCC
Q psy988 369 PDKSESTGYVLVSADFNGVIRVFLNKT 395 (408)
Q Consensus 369 ~~~~s~~~~~l~s~~~dg~v~iw~~~~ 395 (408)
+|++.+++ .+| |..++..+
T Consensus 593 ------~g~lW~~t-~~G-l~~~~~~~ 611 (781)
T 3v9f_A 593 ------NGNIWAST-NTG-ISCYITSK 611 (781)
T ss_dssp ------SSCEEEEC-SSC-EEEEETTT
T ss_pred ------CCCEEEEc-CCc-eEEEECCC
Confidence 67666654 344 55566554
No 257
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=99.06 E-value=5.2e-07 Score=81.08 Aligned_cols=115 Identities=7% Similarity=0.009 Sum_probs=69.4
Q ss_pred CEEEEEeC-CCcEEEEec-CCCCceeeeeecCCce---------eeEEEEEecCCCE----EEEEecCCEEEEEeccCCe
Q psy988 36 RYFLSGSL-DGKLRLWNI-PDKKVAVWNEVEGQTK---------LITAANFCENGKF----AVVGSYDGRCIFYTTDQLK 100 (408)
Q Consensus 36 ~~l~t~~~-dg~i~iw~~-~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~----l~~~~~dg~i~iw~~~~~~ 100 (408)
..++.++. ++.|.-+|. .+++.+-......... ....++++|.+.. ++.++.|+.+..+|..+++
T Consensus 63 g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~ 142 (599)
T 1w6s_A 63 GKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGE 142 (599)
T ss_dssp TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCC
T ss_pred CEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCC
Confidence 45666666 789999999 8887653222221110 0123445444444 8888899999999999998
Q ss_pred eeEEEEEeecccc-ccCCCCeEEEeeCCCCCeEEEee------CCCeEEEEEccCcccceeec
Q psy988 101 YHTQIHVRSTRGK-NATGRKISGIEPMPGEDKILVTS------NDSRIRLYDLRDLNLSCKYK 156 (408)
Q Consensus 101 ~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~ 156 (408)
............. .....++ + .+..+++++ .+|.|+-+|.++++.+-.+.
T Consensus 143 ~~W~~~~~~~~~~~~~~ssP~----v--~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~ 199 (599)
T 1w6s_A 143 TVWKVENSDIKVGSTLTIAPY----V--VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY 199 (599)
T ss_dssp EEEEEECCCGGGTCBCCSCCE----E--ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred EEEeecCCCCCccceeecCCE----E--ECCEEEEEecccccCCCCeEEEEECCCCcEEEEEc
Confidence 8766543221100 0001111 1 134566665 37999999999998876554
No 258
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=99.05 E-value=6.8e-07 Score=80.37 Aligned_cols=113 Identities=12% Similarity=0.118 Sum_probs=68.0
Q ss_pred CEEEEEeC-CCcEEEEec-CCCCceeeeeecCCce--------e-eEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEE
Q psy988 36 RYFLSGSL-DGKLRLWNI-PDKKVAVWNEVEGQTK--------L-ITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQ 104 (408)
Q Consensus 36 ~~l~t~~~-dg~i~iw~~-~~~~~~~~~~~~~~~~--------~-v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 104 (408)
..++.++. ++.|.-+|. .+++.+-...+..... . -..+.. .+..++.++.|+.+..+|..+++....
T Consensus 63 g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~ 140 (571)
T 2ad6_A 63 DMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINWE 140 (571)
T ss_dssp TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEEE
Confidence 34666666 789999999 8888653222221100 0 011222 356788888999999999999988766
Q ss_pred EEEeecccc-ccCCCCeEEEeeCCCCCeEEEeeC------CCeEEEEEccCcccceeec
Q psy988 105 IHVRSTRGK-NATGRKISGIEPMPGEDKILVTSN------DSRIRLYDLRDLNLSCKYK 156 (408)
Q Consensus 105 ~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~ 156 (408)
......... .....++ . .+..+++++. ++.|+.+|.++++.+..+.
T Consensus 141 ~~~~~~~~~~~~~~~P~----v--~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 193 (571)
T 2ad6_A 141 VEVCDPKVGSTLTQAPF----V--AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAF 193 (571)
T ss_dssp EECCCGGGTCBCCSCCE----E--ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred ecCCCCCccceeccCCE----E--ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEc
Confidence 543221100 0001111 1 2446666654 7899999999998876654
No 259
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.04 E-value=1.3e-05 Score=75.43 Aligned_cols=350 Identities=9% Similarity=0.085 Sum_probs=195.9
Q ss_pred eEEEEeccCCeeEeEEE--------eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeec-----CCceee
Q psy988 4 TVRLWHISRKECLCCFQ--------HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVE-----GQTKLI 70 (408)
Q Consensus 4 ~i~vwd~~~~~~~~~~~--------h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~-----~~~~~v 70 (408)
-|..||..+++...... ....|.++...+ ++.+.+ |+.+ -+.+||..+++........ .....|
T Consensus 184 Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lwi-gt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i 260 (781)
T 3v9f_A 184 GLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDT-NGNIWI-GTSK-GLALFNANTETFTNFHNNPGNIHGALSSYI 260 (781)
T ss_dssp EEEEEETTTTEEEEECC--------CCSSEEEEEECT-TCCEEE-EETT-EEEEEETTTTEEEC-----------CCCCE
T ss_pred CeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcC-CCCEEE-EeCC-cHheECCCCCcEEEEEcCCCccccccCceE
Confidence 46667776665433210 135689999888 776544 4454 5899998776554221111 123568
Q ss_pred EEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEE--E----eeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEE
Q psy988 71 TAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIH--V----RSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLY 144 (408)
Q Consensus 71 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~ 144 (408)
.++...++|. |..|+..+-|.+++..+........ . ............|.++...+++ .|.+|+.++-|..+
T Consensus 261 ~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g-~lWigt~~~Gl~~~ 338 (781)
T 3v9f_A 261 FSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFN-NIWIGTWGGGINFI 338 (781)
T ss_dssp EEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSC-CEEEEEBSSCEEEE
T ss_pred EEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCC-CEEEEecCCeEEEe
Confidence 8988887776 5556664568888887654322111 0 0000112234578899888766 47777777778999
Q ss_pred EccCcccceee-------cCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccce
Q psy988 145 DLRDLNLSCKY-------KGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAV 217 (408)
Q Consensus 145 d~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (408)
+..+....... ........+.++...++|. |..|+.++-|..||..+.....- . .........
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~--~-------~~~~~~~~~ 408 (781)
T 3v9f_A 339 SNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYN--K-------ENRELLSNS 408 (781)
T ss_dssp CSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC--------------CCCSB
T ss_pred CCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEc--c-------CCCCCCCcc
Confidence 88765432211 1111223466777777765 66666666688898764322110 0 000123456
Q ss_pred EEEEEEeCCcceeeeecCCC-----CCCCceeee---cCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEe
Q psy988 218 VTCAVFAPCPELIIAQMEPD-----KSESTGYVL---NATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYK 289 (408)
Q Consensus 218 v~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 289 (408)
|.++...+++...+...... ........+ ......|.++...+++...+. +. +-+..||..+++......
T Consensus 409 v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwig-t~-~Gl~~~~~~~~~~~~~~~ 486 (781)
T 3v9f_A 409 VLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIG-TH-AGVFVIDLASKKVIHHYD 486 (781)
T ss_dssp EEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEE-ET-TEEEEEESSSSSCCEEEC
T ss_pred eEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEE-EC-CceEEEeCCCCeEEeccc
Confidence 88888888777666543111 011111111 123457888888888775554 44 458899988765543322
Q ss_pred ec---cceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhc
Q psy988 290 GY---VNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQ 366 (408)
Q Consensus 290 ~~---~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 366 (408)
.. .....+.++...++|++.+.....| +..|+..+.... .... .. .-....|.++...+
T Consensus 487 ~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~~--~~~~-----~~--~l~~~~i~~i~~d~-------- 548 (781)
T 3v9f_A 487 TSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLVR--KFNQ-----YE--GFCSNTINQIYRSS-------- 548 (781)
T ss_dssp TTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEEE--EECT-----TT--TCSCSCEEEEEECT--------
T ss_pred CcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeEE--EccC-----CC--CCCCCeeEEEEECC--------
Confidence 11 0124678888999888666543344 777876653110 0000 00 01235688898888
Q ss_pred cCCCCCCCcccEEEEEecCCeEEEEeCCCCC
Q psy988 367 MEPDKSESTGYVLVSADFNGVIRVFLNKTKP 397 (408)
Q Consensus 367 ~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 397 (408)
+|++.++.. +|.|..|+..+++
T Consensus 549 --------~g~lWi~T~-~Glv~~~d~~~~~ 570 (781)
T 3v9f_A 549 --------KGQMWLATG-EGLVCFPSARNFD 570 (781)
T ss_dssp --------TSCEEEEET-TEEEEESCTTTCC
T ss_pred --------CCCEEEEEC-CCceEEECCCCCc
Confidence 777666554 7765888877654
No 260
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=99.01 E-value=2.9e-06 Score=76.40 Aligned_cols=118 Identities=11% Similarity=-0.027 Sum_probs=65.4
Q ss_pred CCCEEEEEeCCCcEEEEecCCCCceeeeeecCCcee-------eEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEE
Q psy988 34 DDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKL-------ITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIH 106 (408)
Q Consensus 34 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~-------v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 106 (408)
++. ++.++.++.|.-+|..+++.+-.......... -..+.. .+..++.++.++.|..+|.++++......
T Consensus 68 ~g~-vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~ 144 (582)
T 1flg_A 68 DGV-IYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKK 144 (582)
T ss_dssp TTE-EEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEE
T ss_pred CCE-EEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeec
Confidence 444 55555534488899998886532222211100 011122 35568888899999999999998876654
Q ss_pred Eeecccc-ccCCCCeEEEeeCCCCC-eEEEeeC------CCeEEEEEccCcccceee
Q psy988 107 VRSTRGK-NATGRKISGIEPMPGED-KILVTSN------DSRIRLYDLRDLNLSCKY 155 (408)
Q Consensus 107 ~~~~~~~-~~~~~~v~~~~~~~~~~-~l~~~~~------dg~i~i~d~~~~~~~~~~ 155 (408)
....... .....++.. .-..+++ .+++++. ++.|+-+|.++++.+-..
T Consensus 145 ~~~~~~~~~~~~sP~v~-~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~ 200 (582)
T 1flg_A 145 FADHGAGYTMTGAPTIV-KDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMR 200 (582)
T ss_dssp CSCGGGTCBCCSCCEEE-ECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEE
T ss_pred CCCCCcCcccccCCEEe-CCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeec
Confidence 3321100 001112110 0001223 5666542 789999999998876554
No 261
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.99 E-value=1.1e-07 Score=74.43 Aligned_cols=165 Identities=10% Similarity=0.081 Sum_probs=110.6
Q ss_pred eeEeEEEeCCce--EEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEE-EecCCE
Q psy988 14 ECLCCFQHIDFV--TAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVV-GSYDGR 90 (408)
Q Consensus 14 ~~~~~~~h~~~v--~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~ 90 (408)
+.+.++.|...- ..+.|+ ++.++++.+.+|.|+++|+++++..... +.. ........++++.|+. .-.++.
T Consensus 44 ~Vv~~~phd~~~ftqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~---~~FgeGit~~g~~Ly~ltw~~~~ 117 (268)
T 3nok_A 44 HIIREYPHATNAFTQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME-RLG---NIFAEGLASDGERLYQLTWTEGL 117 (268)
T ss_dssp EEEEEEECCTTCCEEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE-ECT---TCCEEEEEECSSCEEEEESSSCE
T ss_pred EEEEEEcCCCccccceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCC---CcceeEEEEeCCEEEEEEccCCE
Confidence 455666666444 788997 4678888888899999999999987533 333 2222222334444444 446789
Q ss_pred EEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccc---cceEE
Q psy988 91 CIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVS---SQIKA 167 (408)
Q Consensus 91 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~---~~~~~ 167 (408)
+.+||.++.+....+.... .-..+ +++++.|+.+..++.|.++|.++.+.+..+.-..... .+..+
T Consensus 118 v~V~D~~Tl~~~~ti~~~~---------eGwGL--t~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeL 186 (268)
T 3nok_A 118 LFTWSGMPPQRERTTRYSG---------EGWGL--CYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINEL 186 (268)
T ss_dssp EEEEETTTTEEEEEEECSS---------CCCCE--EEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEE
T ss_pred EEEEECCcCcEEEEEeCCC---------ceeEE--ecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCccccccccc
Confidence 9999999999877765421 11233 3568888888778999999999988877765433221 23456
Q ss_pred EEecCCCEEEEeecCceEEEeeeccceee
Q psy988 168 SFSHDGKYIVSGSENQCIYIWKTHHDYAK 196 (408)
Q Consensus 168 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 196 (408)
.|. +|+..+....+..|.+.|.+++...
T Consensus 187 e~~-dG~lyanvw~s~~I~vIDp~TG~V~ 214 (268)
T 3nok_A 187 ECA-NGVIYANIWHSSDVLEIDPATGTVV 214 (268)
T ss_dssp EEE-TTEEEEEETTCSEEEEECTTTCBEE
T ss_pred EEe-CCEEEEEECCCCeEEEEeCCCCcEE
Confidence 666 6754544446778999998876543
No 262
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.95 E-value=1.5e-07 Score=73.60 Aligned_cols=167 Identities=11% Similarity=0.016 Sum_probs=114.6
Q ss_pred CceEEEEeccCCeeEeEEEeCCceEE--EEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCC
Q psy988 2 DKTVRLWHISRKECLCCFQHIDFVTA--ICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENG 79 (408)
Q Consensus 2 Dg~i~vwd~~~~~~~~~~~h~~~v~~--~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 79 (408)
+|.|+++|+++++.+..+ -...... +++. ++++.+....++.+.+||.++.+... .+..... -.. +++++
T Consensus 74 ~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~--ti~~~~e-GwG--Lt~Dg 145 (268)
T 3nok_A 74 QGTLRQLSLESAQPVWME-RLGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRER--TTRYSGE-GWG--LCYWN 145 (268)
T ss_dssp TTEEEECCSSCSSCSEEE-ECTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEE--EEECSSC-CCC--EEEET
T ss_pred CCEEEEEECCCCcEEeEE-CCCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEE--EEeCCCc-eeE--EecCC
Confidence 577999999999998888 5555544 5554 34555555568999999999988763 3332221 123 33678
Q ss_pred CEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEee-CCCeEEEEEccCcccceeecCc
Q psy988 80 KFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTS-NDSRIRLYDLRDLNLSCKYKGY 158 (408)
Q Consensus 80 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~ 158 (408)
+.|+.+..++.|.++|.++.+....+........ -..++.+.|. +|. |++.. .++.|.+.|.++++.+..+...
T Consensus 146 ~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~---v~~lNeLe~~-dG~-lyanvw~s~~I~vIDp~TG~V~~~Idl~ 220 (268)
T 3nok_A 146 GKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQP---VELINELECA-NGV-IYANIWHSSDVLEIDPATGTVVGVIDAS 220 (268)
T ss_dssp TEEEEECSSSEEEEECTTTCCEEEEEECEETTEE---CCCEEEEEEE-TTE-EEEEETTCSEEEEECTTTCBEEEEEECH
T ss_pred CEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcc---cccccccEEe-CCE-EEEEECCCCeEEEEeCCCCcEEEEEECC
Confidence 8888887899999999999888777665442111 1245667776 564 55554 5789999999999987766432
Q ss_pred c-----------ccccceEEEEecCCCEEEEeec
Q psy988 159 V-----------NVSSQIKASFSHDGKYIVSGSE 181 (408)
Q Consensus 159 ~-----------~~~~~~~~~~~~~~~~l~~~~~ 181 (408)
. .......++++|+++.|++.+.
T Consensus 221 ~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 221 ALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp HHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred CCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 1 1123567999998777766654
No 263
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.95 E-value=2.2e-06 Score=70.86 Aligned_cols=204 Identities=9% Similarity=0.014 Sum_probs=112.7
Q ss_pred eeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCC--CeEEEEE
Q psy988 68 KLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSND--SRIRLYD 145 (408)
Q Consensus 68 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~i~d 145 (408)
.....++|+++|+++++-..++.|..||.+... ..... .......+++.++++.+++.... ..|..+|
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~-~~~~~---------~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d 101 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ-QIHAT---------VEGKVSGLAFTSNGDLVATGWNADSIPVVSLV 101 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE-EEEEE---------CSSEEEEEEECTTSCEEEEEECTTSCEEEEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCce-EEEEe---------CCCCceeEEEcCCCcEEEEeccCCcceEEEEc
Confidence 456789999999877776678999999987632 11111 11368889999999855544332 2477778
Q ss_pred ccCcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeC
Q psy988 146 LRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAP 225 (408)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 225 (408)
..+++........ .......++..+++..+++-..++.|+.+|...+.......... ..... +
T Consensus 102 ~~~g~~~~~~~~~-~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~----~~~~~------------~ 164 (306)
T 2p4o_A 102 KSDGTVETLLTLP-DAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPM----LARSN------------S 164 (306)
T ss_dssp CTTSCEEEEEECT-TCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGG----GSCSS------------T
T ss_pred CCCCeEEEEEeCC-CccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCc----ccccc------------c
Confidence 7777643322211 11112234444555444444457888888865421110000000 00000 0
Q ss_pred CcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEE-ecCCCeEEEEEcCC-Cee--eeEEeeccceeceeEEE
Q psy988 226 CPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILV-TSNDSRIRLYDLRD-LNL--SCKYKGYVNVSSQIKAS 301 (408)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~d~~i~i~d~~~-~~~--~~~~~~~~~~~~v~~~~ 301 (408)
...-.....+ +|+++.|++ -...+.|..|++.. ++. ...+... .....++
T Consensus 165 ---------------------~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~---~~P~gi~ 218 (306)
T 2p4o_A 165 ---------------------ESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ---TNIDDFA 218 (306)
T ss_dssp ---------------------TCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES---CCCSSEE
T ss_pred ---------------------cCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc---CCCCCeE
Confidence 0000112223 555655544 46678999999874 332 1122111 1344689
Q ss_pred EcCCCCEEEEecCCceEEEeecc
Q psy988 302 FSHDGKYIVSGSENQCIYIWKTH 324 (408)
Q Consensus 302 ~s~~~~~l~~~~~dg~i~iw~~~ 324 (408)
++++|+++++....+.|.+++..
T Consensus 219 vd~dG~l~va~~~~~~V~~~~~~ 241 (306)
T 2p4o_A 219 FDVEGNLYGATHIYNSVVRIAPD 241 (306)
T ss_dssp EBTTCCEEEECBTTCCEEEECTT
T ss_pred ECCCCCEEEEeCCCCeEEEECCC
Confidence 99999887777778899999865
No 264
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.94 E-value=6.8e-07 Score=69.39 Aligned_cols=188 Identities=10% Similarity=0.003 Sum_probs=116.2
Q ss_pred eeeEEEEEecCCCEEEEEecC--CEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEe-eCCCeEEEE
Q psy988 68 KLITAANFCENGKFAVVGSYD--GRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVT-SNDSRIRLY 144 (408)
Q Consensus 68 ~~v~~~~~~~~~~~l~~~~~d--g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~ 144 (408)
.-...+.|++ +.+..+.+.+ ..|+.+|+++++.......... ..-..+++ .++.|+.. -.++.+.+|
T Consensus 21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~-------~fgeGi~~--~~~~ly~ltw~~~~v~v~ 90 (243)
T 3mbr_X 21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPP-------YFGAGIVA--WRDRLIQLTWRNHEGFVY 90 (243)
T ss_dssp CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT-------CCEEEEEE--ETTEEEEEESSSSEEEEE
T ss_pred cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC-------cceeEEEE--eCCEEEEEEeeCCEEEEE
Confidence 3466888876 5555666654 4999999999988766643221 01122333 35556555 457899999
Q ss_pred EccCcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEe
Q psy988 145 DLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFA 224 (408)
Q Consensus 145 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 224 (408)
|..+.+.+.++...... ..+.++++.|+.+..++.|.++|.++...... +...
T Consensus 91 D~~tl~~~~ti~~~~~G-----wglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~----------------------I~V~ 143 (243)
T 3mbr_X 91 DLATLTPRARFRYPGEG-----WALTSDDSHLYMSDGTAVIRKLDPDTLQQVGS----------------------IKVT 143 (243)
T ss_dssp ETTTTEEEEEEECSSCC-----CEEEECSSCEEEECSSSEEEEECTTTCCEEEE----------------------EECE
T ss_pred ECCcCcEEEEEeCCCCc-----eEEeeCCCEEEEECCCCeEEEEeCCCCeEEEE----------------------EEEc
Confidence 99999988887754321 34456777788777788999999876432211 1110
Q ss_pred CCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeecc-----------c
Q psy988 225 PCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV-----------N 293 (408)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-----------~ 293 (408)
.++.-+ ..+..+.+. +|+.++....+..|.+.|..+++.+..+.... .
T Consensus 144 ~~g~~~--------------------~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~ 202 (243)
T 3mbr_X 144 AGGRPL--------------------DNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDST 202 (243)
T ss_dssp ETTEEC--------------------CCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTT
T ss_pred cCCccc--------------------ccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCc
Confidence 000000 011122222 34444555567799999999999988876331 1
Q ss_pred eeceeEEEEcCCCCEEEEec
Q psy988 294 VSSQIKASFSHDGKYIVSGS 313 (408)
Q Consensus 294 ~~~v~~~~~s~~~~~l~~~~ 313 (408)
......++++|+++.|++.+
T Consensus 203 ~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 203 NDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp SSCEEEEEEETTTTEEEEEE
T ss_pred CCceEEEEEcCCCCEEEEEC
Confidence 22457899999877666554
No 265
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.90 E-value=2.4e-06 Score=67.39 Aligned_cols=169 Identities=8% Similarity=0.065 Sum_probs=105.0
Q ss_pred CCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCee
Q psy988 22 IDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKY 101 (408)
Q Consensus 22 ~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 101 (408)
.+.+..++|+|+++.++++...++.|...|.. ++......+.+. .....+++.+++.++++.-.++.+.++++.....
T Consensus 26 ~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~-~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~ 103 (255)
T 3qqz_A 26 TNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFV-KDLETIEYIGDNQFVISDERDYAIYVISLTPNSE 103 (255)
T ss_dssp CSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSC-SSEEEEEECSTTEEEEEETTTTEEEEEEECTTCC
T ss_pred ccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCC-CChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCe
Confidence 35699999999444455557778889999987 665532333332 4577888889988777766778999998876553
Q ss_pred eEEEEEeecc-ccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccC---cccceeec-----CccccccceEEEEecC
Q psy988 102 HTQIHVRSTR-GKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRD---LNLSCKYK-----GYVNVSSQIKASFSHD 172 (408)
Q Consensus 102 ~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~-----~~~~~~~~~~~~~~~~ 172 (408)
.......... ...........++|.|.++.|+++.+.....+|.+.. ...+..+. ..........++++|.
T Consensus 104 i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~ 183 (255)
T 3qqz_A 104 VKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQ 183 (255)
T ss_dssp EEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETT
T ss_pred eeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCC
Confidence 2222222111 1123345689999999998888887765556665541 11111111 0111123457889996
Q ss_pred CCE-EEEeecCceEEEeeecc
Q psy988 173 GKY-IVSGSENQCIYIWKTHH 192 (408)
Q Consensus 173 ~~~-l~~~~~dg~i~i~d~~~ 192 (408)
... ++.......+..+|.+.
T Consensus 184 tg~lliLS~~s~~L~~~d~~g 204 (255)
T 3qqz_A 184 KNTLLVLSHESRALQEVTLVG 204 (255)
T ss_dssp TTEEEEEETTTTEEEEECTTC
T ss_pred CCeEEEEECCCCeEEEEcCCC
Confidence 554 45555667888888653
No 266
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.89 E-value=6.5e-07 Score=69.48 Aligned_cols=169 Identities=10% Similarity=-0.018 Sum_probs=113.6
Q ss_pred ceEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEE
Q psy988 3 KTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFA 82 (408)
Q Consensus 3 g~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 82 (408)
..|+++|+++++.+....-..........+.++++.+....++.+.+||.++.+... .+...... .. +.++++.|
T Consensus 43 S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~--ti~~~~~G-wg--lt~dg~~L 117 (243)
T 3mbr_X 43 SSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRA--RFRYPGEG-WA--LTSDDSHL 117 (243)
T ss_dssp CEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEE--EEECSSCC-CE--EEECSSCE
T ss_pred ceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEE--EEeCCCCc-eE--EeeCCCEE
Confidence 479999999999999988555554433333134555555568999999999988763 33322221 23 34677878
Q ss_pred EEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEee-CCCeEEEEEccCcccceeecCc---
Q psy988 83 VVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTS-NDSRIRLYDLRDLNLSCKYKGY--- 158 (408)
Q Consensus 83 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~--- 158 (408)
+.+..++.|.++|.++.+....+........ -..++.+.+. ++. +++.. .+..|.+.|.++++.+..+...
T Consensus 118 ~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~---~~~lNeLe~~-~G~-lyanvw~s~~I~vIDp~tG~V~~~idl~~l~ 192 (243)
T 3mbr_X 118 YMSDGTAVIRKLDPDTLQQVGSIKVTAGGRP---LDNLNELEWV-NGE-LLANVWLTSRIARIDPASGKVVAWIDLQALV 192 (243)
T ss_dssp EEECSSSEEEEECTTTCCEEEEEECEETTEE---CCCEEEEEEE-TTE-EEEEETTTTEEEEECTTTCBEEEEEECGGGS
T ss_pred EEECCCCeEEEEeCCCCeEEEEEEEccCCcc---cccceeeEEe-CCE-EEEEECCCCeEEEEECCCCCEEEEEECCcCc
Confidence 8777889999999999887777665432111 1245666665 454 54443 5779999999999987765422
Q ss_pred --------cccccceEEEEecCCCEEEEeec
Q psy988 159 --------VNVSSQIKASFSHDGKYIVSGSE 181 (408)
Q Consensus 159 --------~~~~~~~~~~~~~~~~~l~~~~~ 181 (408)
........++++|+++.|++.+.
T Consensus 193 ~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 193 PDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp TTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred cccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 11123567999998887777664
No 267
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.86 E-value=9.3e-06 Score=70.31 Aligned_cols=156 Identities=16% Similarity=0.132 Sum_probs=91.6
Q ss_pred ceEEEEEcCC-CCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCC-----EEEEEecc
Q psy988 24 FVTAICFHPR-DDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDG-----RCIFYTTD 97 (408)
Q Consensus 24 ~v~~~~~sp~-~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iw~~~ 97 (408)
....++|+|+ ++..|..+...+.|+.++..++... .+.........++++++|+ |+.+...+ .+...+..
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~---~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~ 215 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVD---IKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRA 215 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEE---EECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGG
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEE---EeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECC
Confidence 3578999982 1334555544489999999877655 3333445688999999999 55444321 23333332
Q ss_pred CCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEe-eCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEE
Q psy988 98 QLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVT-SNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYI 176 (408)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 176 (408)
...... ..... ......++++|++..|+++ ..++.|+.+|..++.....+...........++++|++++|
T Consensus 216 ~~~~~~-~~~~~-------~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~L 287 (433)
T 4hw6_A 216 SGFTER-LSLCN-------ARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWA 287 (433)
T ss_dssp GTTCCE-EEEEE-------CSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEE
T ss_pred CCeecc-ccccc-------cCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEE
Confidence 221110 11111 1346678899944455554 55788999998866652222111111223469999999966
Q ss_pred EEee-cCceEEEeeec
Q psy988 177 VSGS-ENQCIYIWKTH 191 (408)
Q Consensus 177 ~~~~-~dg~i~i~d~~ 191 (408)
+.+. ..+.|+.++..
T Consensus 288 Yvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 288 YIIYNGKHCIYRVDYN 303 (433)
T ss_dssp EEEETTTTEEEEEEBC
T ss_pred EEEeCCCCEEEEEeCC
Confidence 6554 45788887764
No 268
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.83 E-value=0.00011 Score=71.36 Aligned_cols=135 Identities=10% Similarity=0.108 Sum_probs=81.8
Q ss_pred ceEEEEeccCCeeEeEEEe--CCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecC--
Q psy988 3 KTVRLWHISRKECLCCFQH--IDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCEN-- 78 (408)
Q Consensus 3 g~i~vwd~~~~~~~~~~~h--~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~-- 78 (408)
..|++.+......+..+.. ...|...+.+. ..++.++ .+.+.+++++.++....... .-...|.|+++.|.
T Consensus 492 ~~Irli~~~~~~~~~~w~~p~~~~I~~As~n~---~~vvva~-g~~l~~fel~~~~L~~~~~~-~l~~evscl~i~~~~~ 566 (1158)
T 3ei3_A 492 ASVRLVSQEPKALVSEWKEPQAKNISVASCNS---SQVVVAV-GRALYYLQIHPQELRQISHT-EMEHEVACLDITPLGD 566 (1158)
T ss_dssp SCEEEEESSSCCEEEEECCTTCCCCCEEEECS---SEEEEEE-TTEEEEEEEETTEEEEEEEE-ECSSCEEEEECCCCSS
T ss_pred CEEEEEECCCCeEEEEEECCCCCEEEEEEeCC---CEEEEEE-CCEEEEEEeeCCceeeeccc-CCCCceEEEEeecCCC
Confidence 4566777665555555552 23566666543 3565554 57888888876654332222 23457999999763
Q ss_pred ----CCEEEEEec-CCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEcc
Q psy988 79 ----GKFAVVGSY-DGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLR 147 (408)
Q Consensus 79 ----~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 147 (408)
+++++.|.. |++++|+++.+.+......+.. . .....+.-+.+ ....+|.+|-.||.+.-+.+.
T Consensus 567 ~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~---~-~~p~si~l~~~-~~~~~L~igl~dG~l~~~~~d 635 (1158)
T 3ei3_A 567 SNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGG---E-IIPRSILMTTF-ESSHYLLCALGDGALFYFGLN 635 (1158)
T ss_dssp STTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCS---S-CCEEEEEEEEE-TTEEEEEEEETTSEEEEEEEC
T ss_pred CcccccEEEEEECCCCEEEEEECCCCCeEEEEECCC---C-CCCcEEEEEEe-CCCcEEEEEeCCCeEEEEEEc
Confidence 478999997 9999999998765543332211 0 01112322333 234578888899988766554
No 269
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.83 E-value=3.1e-07 Score=84.48 Aligned_cols=96 Identities=11% Similarity=0.166 Sum_probs=63.6
Q ss_pred eEEEEeccCCeeEeE--EE--eCCceEEEEEcCCCCCEEEEEeC-CCcEEEEecCCCCceeeeeecCCceeeEEEEEecC
Q psy988 4 TVRLWHISRKECLCC--FQ--HIDFVTAICFHPRDDRYFLSGSL-DGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCEN 78 (408)
Q Consensus 4 ~i~vwd~~~~~~~~~--~~--h~~~v~~~~~sp~~~~~l~t~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 78 (408)
.+.+||+.+++.... .. +.....++++.+ ++++++.|+. +..+.+||..+.+......+... ..-.++...++
T Consensus 220 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~-~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~-R~~~s~~~~~d 297 (656)
T 1k3i_A 220 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDG-NGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVA-RGYQSSATMSD 297 (656)
T ss_dssp EEEEECTTTCCBCCCEEEECSCCCSSCEEEECT-TSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSC-CSSCEEEECTT
T ss_pred EEEEEeCCCCcEEeCcccCCCCCCccccccCCC-CCCEEEeCCCCCCceEEecCcCCceeECCCCCcc-ccccceEEecC
Confidence 577888877764432 22 333344577888 8999999985 46899999988765533322221 12234455678
Q ss_pred CCEEEEEe-cC-----CEEEEEeccCCee
Q psy988 79 GKFAVVGS-YD-----GRCIFYTTDQLKY 101 (408)
Q Consensus 79 ~~~l~~~~-~d-----g~i~iw~~~~~~~ 101 (408)
|+.++.|+ .+ ..+.+||..+...
T Consensus 298 g~iyv~GG~~~~~~~~~~~e~yd~~t~~W 326 (656)
T 1k3i_A 298 GRVFTIGGSWSGGVFEKNGEVYSPSSKTW 326 (656)
T ss_dssp SCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred CeEEEEeCcccCCcccccceEeCCCCCcc
Confidence 99999988 34 5789999987664
No 270
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.82 E-value=8.5e-06 Score=69.55 Aligned_cols=177 Identities=14% Similarity=0.019 Sum_probs=111.9
Q ss_pred ceEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEE
Q psy988 3 KTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFA 82 (408)
Q Consensus 3 g~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 82 (408)
..|+..++.+.+..........+..++|++.++.++++-...+.|..+++.+..... .+.........+++.+.+..|
T Consensus 96 ~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~--~~~~~~~~p~glavd~~~g~l 173 (386)
T 3v65_B 96 IDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE--VVSTGLESPGGLAVDWVHDKL 173 (386)
T ss_dssp SCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEE--EECSSCSCCCCEEEETTTTEE
T ss_pred ccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEE--EEeCCCCCccEEEEEeCCCeE
Confidence 457777777766655555556688999998455555555567889999988765432 222222345678888755444
Q ss_pred -EEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeC-C-CeEEEEEccCcccceeecCcc
Q psy988 83 -VVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSN-D-SRIRLYDLRDLNLSCKYKGYV 159 (408)
Q Consensus 83 -~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-g~i~i~d~~~~~~~~~~~~~~ 159 (408)
++-...+.|.+.+++......... ........+++.|.+..|+.+.. . +.|..+++...........
T Consensus 174 Y~~d~~~~~I~~~~~dg~~~~~l~~--------~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~-- 243 (386)
T 3v65_B 174 YWTDSGTSRIEVANLDGAHRKVLLW--------QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADT-- 243 (386)
T ss_dssp EEEETTTTEEEECBTTSCSCEEEEC--------SSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECS--
T ss_pred EEEcCCCCeEEEEeCCCCceEEeec--------CCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEEC--
Confidence 455556788888887543222111 11235788999998877777644 3 6788888864433222221
Q ss_pred ccccceEEEEecCCCEEEEee-cCceEEEeeec
Q psy988 160 NVSSQIKASFSHDGKYIVSGS-ENQCIYIWKTH 191 (408)
Q Consensus 160 ~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~ 191 (408)
.......++++|++..|+.+. ..+.|..+|+.
T Consensus 244 ~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~d 276 (386)
T 3v65_B 244 HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD 276 (386)
T ss_dssp SCSCEEEEEEEGGGTEEEEEETTTTEEEEECTT
T ss_pred CCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence 223356799998777766654 45678888764
No 271
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.81 E-value=2.2e-05 Score=65.91 Aligned_cols=177 Identities=14% Similarity=0.021 Sum_probs=111.7
Q ss_pred ceEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEE
Q psy988 3 KTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFA 82 (408)
Q Consensus 3 g~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 82 (408)
+.|+..++...+..........+..++|++.++.++++-...+.|..+++.+..... ...........+++.+.+..|
T Consensus 53 ~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~--~~~~~~~~p~glavd~~~g~l 130 (349)
T 3v64_C 53 IDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE--VVSTGLESPGGLAVDWVHDKL 130 (349)
T ss_dssp SCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE--EECSSCSCCCEEEEETTTTEE
T ss_pred cceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceE--EEeCCCCCccEEEEecCCCeE
Confidence 456677776665555555555689999998455555555567889999988765442 222223345788888755444
Q ss_pred -EEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeC-C-CeEEEEEccCcccceeecCcc
Q psy988 83 -VVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSN-D-SRIRLYDLRDLNLSCKYKGYV 159 (408)
Q Consensus 83 -~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-g~i~i~d~~~~~~~~~~~~~~ 159 (408)
++-...+.|.+.+.+......... ........+++.|.+..|+.+.. . +.|..+++..... ..+.. .
T Consensus 131 y~~d~~~~~I~~~~~dG~~~~~l~~--------~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~-~~~~~-~ 200 (349)
T 3v64_C 131 YWTDSGTSRIEVANLDGAHRKVLLW--------QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR-RIIAD-T 200 (349)
T ss_dssp EEEETTTTEEEEEETTSCSCEEEEC--------TTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EESCC-S
T ss_pred EEEcCCCCeEEEEcCCCCceEEEEe--------CCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCc-EEEEE-C
Confidence 555556899999987654222110 11235788999997777776644 3 7888888864332 22211 1
Q ss_pred ccccceEEEEecCCCEEEEee-cCceEEEeeec
Q psy988 160 NVSSQIKASFSHDGKYIVSGS-ENQCIYIWKTH 191 (408)
Q Consensus 160 ~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~ 191 (408)
.......++++|++..|+.+. ..+.|..+|+.
T Consensus 201 ~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~d 233 (349)
T 3v64_C 201 HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD 233 (349)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCCCcceEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence 223466799998777776664 45678888764
No 272
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.78 E-value=4.2e-05 Score=63.33 Aligned_cols=177 Identities=12% Similarity=0.002 Sum_probs=112.6
Q ss_pred ceEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCC----CCceeeeeecCCceeeEEEEEecC
Q psy988 3 KTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPD----KKVAVWNEVEGQTKLITAANFCEN 78 (408)
Q Consensus 3 g~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~----~~~~~~~~~~~~~~~v~~~~~~~~ 78 (408)
+.|+..|+.+.+....+.....+..++|++.++.++++-..++.|..+++.+ .... ..+...-.....+++.+.
T Consensus 10 ~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~--~~~~~~~~~p~glavd~~ 87 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD--TVISRDIQAPDGLAVDWI 87 (316)
T ss_dssp SSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CE--EEECSSCSCCCEEEEETT
T ss_pred CeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccE--EEEeCCCCCcCEEEEeec
Confidence 5688899988877666666677899999983445555555678999999876 2222 122222234578888875
Q ss_pred CCEE-EEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCC--CeEEEEEccCcccceee
Q psy988 79 GKFA-VVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSND--SRIRLYDLRDLNLSCKY 155 (408)
Q Consensus 79 ~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~ 155 (408)
+..| ++-...+.|.+.+.+......... ........+++.|.+..|+.+... +.|...++.. .....+
T Consensus 88 ~~~ly~~d~~~~~I~~~~~~g~~~~~~~~--------~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~~~~~ 158 (316)
T 1ijq_A 88 HSNIYWTDSVLGTVSVADTKGVKRKTLFR--------ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSL 158 (316)
T ss_dssp TTEEEEEETTTTEEEEEETTSSSEEEEEE--------CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEEEE
T ss_pred CCeEEEEECCCCEEEEEeCCCCceEEEEE--------CCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CCeEEE
Confidence 5444 454567899999987643322111 011357889999977777776543 6888888764 322222
Q ss_pred cCccccccceEEEEecCCCEEEEee-cCceEEEeeec
Q psy988 156 KGYVNVSSQIKASFSHDGKYIVSGS-ENQCIYIWKTH 191 (408)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~ 191 (408)
.. ........+++++++..|+.+. ..+.|..+|+.
T Consensus 159 ~~-~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~d 194 (316)
T 1ijq_A 159 VT-ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 194 (316)
T ss_dssp EC-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EE-CCCCCceEEEEeccCCEEEEEECCCCeEEEEecC
Confidence 11 1223466799999877776665 45688888875
No 273
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.77 E-value=2.7e-05 Score=67.44 Aligned_cols=155 Identities=12% Similarity=0.170 Sum_probs=94.1
Q ss_pred ceEEEEEcCC-CCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecC----C-EEEEEecc
Q psy988 24 FVTAICFHPR-DDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYD----G-RCIFYTTD 97 (408)
Q Consensus 24 ~v~~~~~sp~-~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g-~i~iw~~~ 97 (408)
....|+++|. ++. |..+...+.|+.+|++++... .+.........++|+++|++|+.+... . .+.+++..
T Consensus 138 ~P~~lavdp~~~g~-Lyv~d~~~~I~~id~~~~~v~---~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~ 213 (430)
T 3tc9_A 138 GAVWLSFDPKNHNH-LYLVGEQHPTRLIDFEKEYVS---TVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE 213 (430)
T ss_dssp CCCEEEEETTEEEE-EEEEEBTEEEEEEETTTTEEE---EEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG
T ss_pred CCCEEEECCCCCCe-EEEEeCCCcEEEEECCCCEEE---EEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC
Confidence 4578899972 354 555544488999998876654 222344568899999999977666542 1 34444433
Q ss_pred CCeeeEEEEEeeccccccCCCCeEEEeeCC-CCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEE
Q psy988 98 QLKYHTQIHVRSTRGKNATGRKISGIEPMP-GEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYI 176 (408)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 176 (408)
. .......... ......++++| ++..+++-..++.|..++...+......... .......++++|+|++|
T Consensus 214 g-~~~~~~~l~~-------~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~-~~~~P~gia~~pdG~~l 284 (430)
T 3tc9_A 214 S-GFKVITELTK-------GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQ-DSGWEFHIQFHPSGNYA 284 (430)
T ss_dssp G-TSCSEEEEEE-------CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECS-SSSCCEEEEECTTSSEE
T ss_pred C-ceeeeeeecc-------CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcC-CCCcceeEEEcCCCCEE
Confidence 2 2211111111 12467788999 4544444456789999999866542222111 11335679999999966
Q ss_pred EEee-cCceEEEeeec
Q psy988 177 VSGS-ENQCIYIWKTH 191 (408)
Q Consensus 177 ~~~~-~dg~i~i~d~~ 191 (408)
+.+. ..+.|..++..
T Consensus 285 yv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 285 YIVVVNQHYILRSDYD 300 (430)
T ss_dssp EEEETTTTEEEEEEEE
T ss_pred EEEECCCCEEEEEeCC
Confidence 5554 56788888875
No 274
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.71 E-value=9.7e-05 Score=63.29 Aligned_cols=179 Identities=12% Similarity=0.026 Sum_probs=109.8
Q ss_pred ceEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCC--ceeeeeecCCceeeEEEEEecC-C
Q psy988 3 KTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKK--VAVWNEVEGQTKLITAANFCEN-G 79 (408)
Q Consensus 3 g~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~--~~~~~~~~~~~~~v~~~~~~~~-~ 79 (408)
..|+..++..............+..|+|++.++.++++-...+.|..+++.... ................+++.+. +
T Consensus 92 ~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~ 171 (400)
T 3p5b_L 92 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS 171 (400)
T ss_dssp TEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTT
T ss_pred ceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCC
Confidence 467777877766666666667889999998445555555557889999987632 1111223333446788899874 4
Q ss_pred CEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeC--CCeEEEEEccCcccceeecC
Q psy988 80 KFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSN--DSRIRLYDLRDLNLSCKYKG 157 (408)
Q Consensus 80 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~ 157 (408)
++.++-...+.|.+.+++......... ........+++.|.+..|+.+.. .+.|...++...........
T Consensus 172 ~lY~~d~~~~~I~~~~~~g~~~~~l~~--------~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~ 243 (400)
T 3p5b_L 172 NIYWTDSVLGTVSVADTKGVKRKTLFR--------ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE 243 (400)
T ss_dssp EEEEEETTTTEEEEECTTTCSEEEEEE--------CSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECS
T ss_pred ceEEEECCCCeEEEEeCCCCceEEEEe--------CCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEEC
Confidence 444555567899999988654332221 01235788999997777777653 36788888764333222221
Q ss_pred ccccccceEEEEecCCCEEEEeec-CceEEEeeec
Q psy988 158 YVNVSSQIKASFSHDGKYIVSGSE-NQCIYIWKTH 191 (408)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~i~d~~ 191 (408)
.......+++++++..|+.+.. .+.|..+|+.
T Consensus 244 --~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~d 276 (400)
T 3p5b_L 244 --NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 276 (400)
T ss_dssp --SCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred --CCCceEEEEEEeCCCEEEEEECCCCEEEEEeCC
Confidence 2233567888887776666643 4567777653
No 275
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.68 E-value=6.6e-05 Score=65.22 Aligned_cols=160 Identities=11% Similarity=0.152 Sum_probs=95.7
Q ss_pred eEEEEEcCC-CCCEEEEEeCCCcEEEEecCCCCceeeeeecC-CceeeEEEEE-------ecCCCEEEEEecCC------
Q psy988 25 VTAICFHPR-DDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEG-QTKLITAANF-------CENGKFAVVGSYDG------ 89 (408)
Q Consensus 25 v~~~~~sp~-~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~-~~~~v~~~~~-------~~~~~~l~~~~~dg------ 89 (408)
...|+|+|. .++++++-...+.|++.|++++.+..+..... .......++| +++|++|+++...+
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~ 220 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES 220 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence 568999983 35555555545678999988877653222211 2235899999 99999777776654
Q ss_pred -EEEEEeccC-CeeeE---EEEEeeccccccCCCCeEEEeeCCCCCeEEEe-eCCCeEEEEEcc-------Cccc-----
Q psy988 90 -RCIFYTTDQ-LKYHT---QIHVRSTRGKNATGRKISGIEPMPGEDKILVT-SNDSRIRLYDLR-------DLNL----- 151 (408)
Q Consensus 90 -~i~iw~~~~-~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~-------~~~~----- 151 (408)
.+.+++... +.... ...... ......++++|++..|+++ ..++.|..+|+. ++..
T Consensus 221 ~~V~~i~r~~~G~~~~~~~~~~v~~-------~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~ 293 (496)
T 3kya_A 221 PSVYIIKRNADGTFDDRSDIQLIAA-------YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIV 293 (496)
T ss_dssp EEEEEEECCTTSCCSTTSCEEEEEE-------ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBG
T ss_pred ceEEEEecCCCCceeecccceeecc-------CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccc
Confidence 255665333 12210 001111 1245678889966666655 567889999997 5543
Q ss_pred ------ceeecCccccccceEEEEecCCCEEEEee-cCceEEEeeec
Q psy988 152 ------SCKYKGYVNVSSQIKASFSHDGKYIVSGS-ENQCIYIWKTH 191 (408)
Q Consensus 152 ------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~ 191 (408)
...+...........++|+|+|++|+.+. ....|+.++..
T Consensus 294 ~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 294 KNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp GGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred cccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 11111111123356799999999665554 46688887653
No 276
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.67 E-value=1.9e-05 Score=73.79 Aligned_cols=113 Identities=10% Similarity=0.042 Sum_probs=74.2
Q ss_pred eeEEEEEe-cCCCEEEEEecC-----CEEEEEeccCC-eeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCC---
Q psy988 69 LITAANFC-ENGKFAVVGSYD-----GRCIFYTTDQL-KYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSND--- 138 (408)
Q Consensus 69 ~v~~~~~~-~~~~~l~~~~~d-----g~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--- 138 (408)
.+...+|| |||++|+.+... ..|+++|+.++ +.... ... .....+.|+||++.|+....+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~~~---------~~~~~~~WspDg~~l~y~~~d~~~ 244 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-KVS---------GTNGEIVWGPDHTSLFYVTKDETL 244 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-CEE---------EECSCCEECSSTTEEEEEEECTTC
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-ccc---------CceeeEEEecCCCEEEEEEECCCC
Confidence 67889999 999988865442 25999999987 52211 000 123468899999988887654
Q ss_pred --CeEEEEEccCcccc--eeecCccccccceEEEEecCCCEEEEeec---CceEEEeeecc
Q psy988 139 --SRIRLYDLRDLNLS--CKYKGYVNVSSQIKASFSHDGKYIVSGSE---NQCIYIWKTHH 192 (408)
Q Consensus 139 --g~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~i~d~~~ 192 (408)
..|+.+++.++... ..+..... .....+.|+|||++|+.... ...|+++|+.+
T Consensus 245 ~~~~v~~~~lgt~~~~~~lv~~~~~~-~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~ 304 (751)
T 2xe4_A 245 RENKVWRHVMGKLQSEDVCLYEEHNP-LFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRK 304 (751)
T ss_dssp CEEEEEEEETTSCGGGCEEEEECCCT-TCEEEEEECTTSSEEEEEEECSSCEEEEEEESSS
T ss_pred CCCEEEEEECCCCchhcEEEEecCCC-ceEEEEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence 36888888776432 22222111 22456789999999887653 34677777754
No 277
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.67 E-value=0.0001 Score=62.92 Aligned_cols=236 Identities=10% Similarity=-0.016 Sum_probs=129.7
Q ss_pred eEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEE-EecCCEEEEEeccCCeeeE
Q psy988 25 VTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVV-GSYDGRCIFYTTDQLKYHT 103 (408)
Q Consensus 25 v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iw~~~~~~~~~ 103 (408)
-.|.+..+ .+ +|+.+ ....|+..++.+..... ... ....+..++|.+.+..|+. -...+.|..++.+......
T Consensus 79 ~~C~~~~~-~~-~l~~~-~~~~I~~i~~~~~~~~~--~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~ 152 (386)
T 3v65_B 79 RSCKALGP-EP-VLLFA-NRIDIRQVLPHRSEYTL--LLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE 152 (386)
T ss_dssp SCEEECSS-CC-EEEEE-CBSCEEEECTTSCCCEE--EEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEE
T ss_pred CeECCccc-cc-eeEee-cCccceeeccCCCcEEE--Eec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEE
Confidence 34444444 33 34443 34678888987766542 222 3345789999976555554 4456889999988654322
Q ss_pred EEEEeeccccccCCCCeEEEeeCCCCCeEEEe-eCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeec-
Q psy988 104 QIHVRSTRGKNATGRKISGIEPMPGEDKILVT-SNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSE- 181 (408)
Q Consensus 104 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~- 181 (408)
... . .......+++.+.+..|+.+ ...+.|.+.++........+.. .......++++|.+..|+....
T Consensus 153 ~~~----~----~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~--~l~~P~giavdp~~g~ly~td~~ 222 (386)
T 3v65_B 153 VVS----T----GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQ--SLEKPRAIALHPMEGTIYWTDWG 222 (386)
T ss_dssp EEC----S----SCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECS--SCSCEEEEEEETTTTEEEEEECS
T ss_pred EEe----C----CCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecC--CCCCCcEEEEEcCCCeEEEeccC
Confidence 111 0 01245678888766666655 4467888888865433222222 2233567899987776665543
Q ss_pred C-ceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCC
Q psy988 182 N-QCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMP 260 (408)
Q Consensus 182 d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 260 (408)
. +.|+.+++...... .+. ...-.....|+++|
T Consensus 223 ~~~~I~r~~~dG~~~~-------------~~~----------------------------------~~~~~~PnGlavd~ 255 (386)
T 3v65_B 223 NTPRIEASSMDGSGRR-------------IIA----------------------------------DTHLFWPNGLTIDY 255 (386)
T ss_dssp SSCEEEEEETTSCSCE-------------EEE----------------------------------CSSCSCEEEEEEEG
T ss_pred CCCEEEEEeCCCCCcE-------------EEE----------------------------------ECCCCCeeeEEEeC
Confidence 3 56666665421100 000 00111234455554
Q ss_pred CCCeEEEe-cCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeecccc
Q psy988 261 GEDKILVT-SNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHD 326 (408)
Q Consensus 261 ~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 326 (408)
++..|+.+ ...+.|..+|+........+... ......+++ ..+.++.+-...+.|..++..++
T Consensus 256 ~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~--~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G 319 (386)
T 3v65_B 256 AGRRMYWVDAKHHVIERANLDGSHRKAVISQG--LPHPFAITV-FEDSLYWTDWHTKSINSANKFTG 319 (386)
T ss_dssp GGTEEEEEETTTTEEEEECTTSCSCEEEECSS--CSSEEEEEE-ETTEEEEEETTTTEEEEEETTTC
T ss_pred CCCEEEEEECCCCEEEEEeCCCCeeEEEEECC--CCCceEEEE-ECCEEEEeeCCCCeEEEEECCCC
Confidence 44444443 55678999987643332222221 223456677 34455556666788888885444
No 278
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.64 E-value=2.1e-05 Score=73.52 Aligned_cols=116 Identities=11% Similarity=0.059 Sum_probs=77.0
Q ss_pred ceEEEEEc-CCCCCEEEEEeC-CC----cEEEEecCCC-CceeeeeecCCceeeEEEEEecCCCEEEEEecC-----CEE
Q psy988 24 FVTAICFH-PRDDRYFLSGSL-DG----KLRLWNIPDK-KVAVWNEVEGQTKLITAANFCENGKFAVVGSYD-----GRC 91 (408)
Q Consensus 24 ~v~~~~~s-p~~~~~l~t~~~-dg----~i~iw~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i 91 (408)
.+...+|| | ||++||.+.. +| .|+++|+.++ +... ..+ ......+.|+|||+.|+....+ ..|
T Consensus 175 ~~~~~~~S~P-DG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~-~~~---~~~~~~~~WspDg~~l~y~~~d~~~~~~~v 249 (751)
T 2xe4_A 175 DVMEVKPAPP-EHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA-DKV---SGTNGEIVWGPDHTSLFYVTKDETLRENKV 249 (751)
T ss_dssp EEEEEEECTT-TTCEEEEEEESSSSSCEEEEEEETTCTTCCCC-CCE---EEECSCCEECSSTTEEEEEEECTTCCEEEE
T ss_pred EEeeeEecCC-CCCEEEEEEeCCCCceEEEEEEECCCCCEeCC-ccc---cCceeeEEEecCCCEEEEEEECCCCCCCEE
Confidence 57889999 9 8988875543 33 4999999988 6321 112 1224568899999988877765 267
Q ss_pred EEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeC---CCeEEEEEccCc
Q psy988 92 IFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSN---DSRIRLYDLRDL 149 (408)
Q Consensus 92 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~ 149 (408)
.++++.+........... ........+.|+||+++|+.... ...|+++|+.++
T Consensus 250 ~~~~lgt~~~~~~lv~~~-----~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 250 WRHVMGKLQSEDVCLYEE-----HNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp EEEETTSCGGGCEEEEEC-----CCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred EEEECCCCchhcEEEEec-----CCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence 888887654221111111 11124567899999999887653 456888998875
No 279
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.62 E-value=0.00016 Score=60.78 Aligned_cols=240 Identities=10% Similarity=-0.022 Sum_probs=133.5
Q ss_pred eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEE-ecCCEEEEEeccCC
Q psy988 21 HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVG-SYDGRCIFYTTDQL 99 (408)
Q Consensus 21 h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iw~~~~~ 99 (408)
+.+..+|.+..+ ++. |+.+ ....|+..++...... ..+. ....+..++|.+.+..|+.. ...+.|..++.+..
T Consensus 32 ~~d~~~C~~~~~-~~~-ll~~-~~~~I~~i~~~g~~~~--~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~ 105 (349)
T 3v64_C 32 RPDRRSCKALGP-EPV-LLFA-NRIDIRQVLPHRSEYT--LLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGS 105 (349)
T ss_dssp CTTSSCEEESSS-CCE-EEEE-CBSCEEEECTTSCCEE--EEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CCCCCccccccc-Cce-eEee-cccceEEEeCCCCeeE--Eeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCC
Confidence 345556666666 443 4433 3456888888766544 2222 33457899999766655544 45688999998765
Q ss_pred eeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEe-eCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEE
Q psy988 100 KYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVT-SNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVS 178 (408)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 178 (408)
....... . .......+++.+.+..|+.+ ...+.|.+.++........+.. .......++++|.+..|+.
T Consensus 106 ~~~~~~~--~------~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~--~l~~P~~iavdp~~g~ly~ 175 (349)
T 3v64_C 106 NVEEVVS--T------GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQ--SLEKPRAIALHPMEGTIYW 175 (349)
T ss_dssp SCEEEEC--S------SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECT--TCSCEEEEEEETTTTEEEE
T ss_pred CceEEEe--C------CCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeC--CCCCcceEEEecCcCeEEE
Confidence 4322111 0 11245678888766666655 4567899999875433222222 2233567899986666655
Q ss_pred eec-C-ceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeee
Q psy988 179 GSE-N-QCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGI 256 (408)
Q Consensus 179 ~~~-d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 256 (408)
... . +.|..+++...... .+. ...-.....+
T Consensus 176 td~~~~~~I~r~~~dG~~~~-------------~~~----------------------------------~~~~~~PnGl 208 (349)
T 3v64_C 176 TDWGNTPRIEASSMDGSGRR-------------IIA----------------------------------DTHLFWPNGL 208 (349)
T ss_dssp EECSSSCEEEEEETTSCSCE-------------ESC----------------------------------CSSCSCEEEE
T ss_pred eccCCCCEEEEEeCCCCCcE-------------EEE----------------------------------ECCCCCcceE
Confidence 543 3 56766665421100 000 0111234455
Q ss_pred ccCCCCCeEEEe-cCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeecccc
Q psy988 257 EPMPGEDKILVT-SNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHD 326 (408)
Q Consensus 257 ~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 326 (408)
+++|++..|+.+ ...+.|..+|+........+... ......+++ ..+....+-...+.|..++..++
T Consensus 209 a~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G 276 (349)
T 3v64_C 209 TIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG--LPHPFAITV-FEDSLYWTDWHTKSINSANKFTG 276 (349)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS--CSSEEEEEE-ETTEEEEEETTTTEEEEEETTTC
T ss_pred EEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCC--CCCceEEEE-ECCEEEEecCCCCeEEEEEccCC
Confidence 555544444444 55678999997743332222221 223456666 34455555556778888875444
No 280
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.60 E-value=0.00011 Score=57.90 Aligned_cols=216 Identities=13% Similarity=0.067 Sum_probs=123.4
Q ss_pred eeecCCceeeEEEEEecCCCEEE-EEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCC
Q psy988 61 NEVEGQTKLITAANFCENGKFAV-VGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDS 139 (408)
Q Consensus 61 ~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 139 (408)
+.+.+-...+..++|+|+++.|+ +...++.|...|.. ++........ + ......+++.+++.++++.-.++
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~---g----~~D~EGIa~~~~g~~~vs~E~~~ 91 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLD---F----VKDLETIEYIGDNQFVISDERDY 91 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECS---S----CSSEEEEEECSTTEEEEEETTTT
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecC---C----CCChHHeEEeCCCEEEEEECCCC
Confidence 35666667899999999866555 46677889999987 5544444321 1 13677888888886656655678
Q ss_pred eEEEEEccCcccc---eeec----CccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccc
Q psy988 140 RIRLYDLRDLNLS---CKYK----GYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIK 212 (408)
Q Consensus 140 ~i~i~d~~~~~~~---~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 212 (408)
.+.++++.....+ .... ........-.++|+|.++.|+++.+.....+|.+.. ... ...+...
T Consensus 92 ~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g-~~~--------~~~l~i~- 161 (255)
T 3qqz_A 92 AIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNG-LLS--------SNELHIS- 161 (255)
T ss_dssp EEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEES-TTC--------SSCCEEE-
T ss_pred cEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcc-ccc--------CCceeee-
Confidence 8999987654421 1111 011122345799999998888887766666666531 000 0000000
Q ss_pred cccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCC-CeEEEecCCCeEEEEEcCCCeeeeEEeec
Q psy988 213 AHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGE-DKILVTSNDSRIRLYDLRDLNLSCKYKGY 291 (408)
Q Consensus 213 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 291 (408)
..+. + .-...-..+.+++++|.. ++++.......+..+|.. ++.+..+.-.
T Consensus 162 ----------~~~~---~--------------~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~ 213 (255)
T 3qqz_A 162 ----------KDKA---L--------------QRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLT 213 (255)
T ss_dssp ----------ECHH---H--------------HHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECS
T ss_pred ----------cchh---h--------------ccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcC
Confidence 0000 0 000011123445555533 345556777888888866 5555555432
Q ss_pred cc-------eeceeEEEEcCCCCEEEEecCCceEEEeec
Q psy988 292 VN-------VSSQIKASFSHDGKYIVSGSENQCIYIWKT 323 (408)
Q Consensus 292 ~~-------~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 323 (408)
.. ....-.++|.++|++.++ ++.+.++.+.-
T Consensus 214 ~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 214 KGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp TTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred CccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence 11 123457999999985555 66666666643
No 281
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.59 E-value=0.0001 Score=63.85 Aligned_cols=111 Identities=8% Similarity=0.001 Sum_probs=68.8
Q ss_pred eeEEEEEec-CCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCC-C----eEE
Q psy988 69 LITAANFCE-NGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSND-S----RIR 142 (408)
Q Consensus 69 ~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g----~i~ 142 (408)
....++++| ++..|+.+...+.|+.+|.++........ .......++++++++.|+++... + .+.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~---------~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~ 208 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS---------GLSKVRTICWTHEADSMIITNDQNNNDRPNNY 208 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC---------CCSCEEEEEECTTSSEEEEEECCSCTTSEEEE
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec---------CCCCcceEEEeCCCCEEEEEeCCCCcccceEE
Confidence 457889998 45667666666889999988765432211 12468899999999977776541 1 344
Q ss_pred EEEccCcccc--eeecCccccccceEEEEec-CCCEEEEeecCceEEEeeecc
Q psy988 143 LYDLRDLNLS--CKYKGYVNVSSQIKASFSH-DGKYIVSGSENQCIYIWKTHH 192 (408)
Q Consensus 143 i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~ 192 (408)
.++. .+... ..+.. ......++++| ++..+++-..++.|+.++...
T Consensus 209 ~~~~-~g~~~~~~~l~~---~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~ 257 (430)
T 3tc9_A 209 ILTR-ESGFKVITELTK---GQNCNGAETHPINGELYFNSWNAGQVFRYDFTT 257 (430)
T ss_dssp EEEG-GGTSCSEEEEEE---CSSCCCEEECTTTCCEEEEETTTTEEEEEETTT
T ss_pred EEeC-CCceeeeeeecc---CCCceEEEEeCCCCEEEEEECCCCEEEEEECCC
Confidence 4443 33332 12221 12345688999 666555555677888888753
No 282
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.56 E-value=0.00015 Score=59.98 Aligned_cols=178 Identities=10% Similarity=-0.029 Sum_probs=110.2
Q ss_pred ceEEEEeccCCe--eEeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCC-
Q psy988 3 KTVRLWHISRKE--CLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENG- 79 (408)
Q Consensus 3 g~i~vwd~~~~~--~~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~- 79 (408)
..|+..++++.. ....+.....+.+++|++.++.++++-...+.|..+++.++.... ..+...-.....+++.+.+
T Consensus 13 ~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~-~~~~~~l~~p~glavd~~~g 91 (318)
T 3sov_A 13 RDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQ-NVVVSGLLSPDGLACDWLGE 91 (318)
T ss_dssp EEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCC-EEEEECCSCCCEEEEETTTT
T ss_pred CeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceE-EEEcCCCCCccEEEEEcCCC
Confidence 468888887763 223333344677999998445555565567889999987764221 1122222346678888754
Q ss_pred CEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeC--CCeEEEEEccCcccceeecC
Q psy988 80 KFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSN--DSRIRLYDLRDLNLSCKYKG 157 (408)
Q Consensus 80 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~ 157 (408)
...++-...+.|.+++.+......... ........+++.|.+..|+.+.. .+.|...++.... ...+..
T Consensus 92 ~ly~~d~~~~~I~~~~~dG~~~~~l~~--------~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~ 162 (318)
T 3sov_A 92 KLYWTDSETNRIEVSNLDGSLRKVLFW--------QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS-RFIIIN 162 (318)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEEEC--------SSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS-CEEEEC
T ss_pred eEEEEECCCCEEEEEECCCCcEEEEEe--------CCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC-eEEEEE
Confidence 444555566899999987643222110 11235788999987777777653 5788888886433 222211
Q ss_pred ccccccceEEEEecCCCEEEEee-cCceEEEeeec
Q psy988 158 YVNVSSQIKASFSHDGKYIVSGS-ENQCIYIWKTH 191 (408)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~ 191 (408)
........+++++++..|+.+. ..+.|..+|+.
T Consensus 163 -~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~d 196 (318)
T 3sov_A 163 -SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD 196 (318)
T ss_dssp -SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred -CCCCCccEEEEeccCCEEEEEECCCCEEEEEcCC
Confidence 1223356799999777776664 45678888875
No 283
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.54 E-value=0.00023 Score=58.84 Aligned_cols=228 Identities=9% Similarity=-0.021 Sum_probs=126.3
Q ss_pred EEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEE-ecCCEEEEEeccCC---eeeEEEEEeeccc
Q psy988 37 YFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVG-SYDGRCIFYTTDQL---KYHTQIHVRSTRG 112 (408)
Q Consensus 37 ~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iw~~~~~---~~~~~~~~~~~~~ 112 (408)
+|+.+. ...|+..++.+.+... .+. ....+..++|.+.+..|+.+ ...+.|..++..+. ...... ..
T Consensus 3 ~ll~~~-~~~I~~i~~~~~~~~~--~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~-~~---- 73 (316)
T 1ijq_A 3 YLFFTN-RHEVRKMTLDRSEYTS--LIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV-IS---- 73 (316)
T ss_dssp EEEEEC-BSSEEEEETTSCCCEE--EEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEE-EC----
T ss_pred EEEEEC-CCeEEEEECCCcceEe--hhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEE-Ee----
Confidence 344443 3679999998876542 222 34457899999876555544 45689999998762 111111 10
Q ss_pred cccCCCCeEEEeeCCCCCeEEEe-eCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecC--ceEEEee
Q psy988 113 KNATGRKISGIEPMPGEDKILVT-SNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSEN--QCIYIWK 189 (408)
Q Consensus 113 ~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d--g~i~i~d 189 (408)
........+++.+.+..|+.+ ...+.|.++++........... .......++++|.+..|+.+... +.|..++
T Consensus 74 --~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~--~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~ 149 (316)
T 1ijq_A 74 --RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE--NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGG 149 (316)
T ss_dssp --SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEEC--TTCCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred --CCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEEC--CCCCcceEEeCCCCCEEEEEccCCCCeEEEEc
Confidence 011245788888766666655 5578999999875433222221 12345678999876666655432 5666666
Q ss_pred eccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEe-
Q psy988 190 THHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVT- 268 (408)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~- 268 (408)
+...... .+ ....-.....++++|++..|+.+
T Consensus 150 ~dG~~~~-------------~~----------------------------------~~~~~~~P~gla~d~~~~~lY~~D 182 (316)
T 1ijq_A 150 LNGVDIY-------------SL----------------------------------VTENIQWPNGITLDLLSGRLYWVD 182 (316)
T ss_dssp TTSCCEE-------------EE----------------------------------ECSSCSCEEEEEEETTTTEEEEEE
T ss_pred CCCCCeE-------------EE----------------------------------EECCCCCceEEEEeccCCEEEEEE
Confidence 5321100 00 00111234556666655555544
Q ss_pred cCCCeEEEEEcCCCeeeeEE-eeccceeceeEEEEcCCCCEEEEecCCceEEEeecccc
Q psy988 269 SNDSRIRLYDLRDLNLSCKY-KGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHD 326 (408)
Q Consensus 269 ~~d~~i~i~d~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 326 (408)
...+.|..+|+.... ...+ ...........+++. .+.++.+-...+.|..++..++
T Consensus 183 ~~~~~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g 239 (316)
T 1ijq_A 183 SKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG 239 (316)
T ss_dssp TTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTC
T ss_pred CCCCeEEEEecCCCc-eEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCC
Confidence 556789999987433 3333 221111234566774 3555555566788888887554
No 284
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.52 E-value=0.00055 Score=62.15 Aligned_cols=159 Identities=11% Similarity=0.001 Sum_probs=94.7
Q ss_pred CceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEec--CCEEEEEeccCCe
Q psy988 23 DFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSY--DGRCIFYTTDQLK 100 (408)
Q Consensus 23 ~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iw~~~~~~ 100 (408)
.....+++.+.+++++++-...+.|.+.+++...... .....-.....+++.|.+.+|+.... .+.|...+++...
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~--l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~ 161 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV--LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS 161 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE--EECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEE--EEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCc
Confidence 5678899998445555555667899999998765432 22233445778999997666665543 3577777766543
Q ss_pred eeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEee-CCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEe
Q psy988 101 YHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTS-NDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSG 179 (408)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 179 (408)
...... . .......+++.++++.|+.+. ..+.|..+|+............ ......+++..+ ..+++-
T Consensus 162 ~~~l~~--~------~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~gi~~~~~-~ly~td 230 (619)
T 3s94_A 162 RFIIIN--S------EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS--LPHPFALTLFED-ILYWTD 230 (619)
T ss_dssp CEEEEC--S------SCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-----------CCCEEESSS-EEEEEC
T ss_pred eEEEEe--C------CCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCC--CCCceEEEEeCC-EEEEec
Confidence 222111 0 123678899999888887774 4678888888654333222211 122345666544 334444
Q ss_pred ecCceEEEeeeccce
Q psy988 180 SENQCIYIWKTHHDY 194 (408)
Q Consensus 180 ~~dg~i~i~d~~~~~ 194 (408)
...+.|...|..++.
T Consensus 231 ~~~~~V~~~d~~tg~ 245 (619)
T 3s94_A 231 WSTHSILACNKYTGE 245 (619)
T ss_dssp TTTCSEEEEESSSCC
T ss_pred CCCCEEEEEECCCCc
Confidence 456778888876553
No 285
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.52 E-value=0.00028 Score=58.65 Aligned_cols=279 Identities=11% Similarity=0.107 Sum_probs=135.2
Q ss_pred eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCC-ceeee-eecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccC
Q psy988 21 HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKK-VAVWN-EVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQ 98 (408)
Q Consensus 21 h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~-~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 98 (408)
....+.++.|.+ .+..++ ++..|.| +...+.++ ..... ........+.++.|.+ +. ++.++..+.|.. ..+.
T Consensus 34 ~~~~~~~v~~~~-~~~~~~-~G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~-~~~~g~~g~i~~-S~Dg 107 (327)
T 2xbg_A 34 TTATILDMSFID-RHHGWL-VGVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NE-GWIVGEPPIMLH-TTDG 107 (327)
T ss_dssp CSSCEEEEEESS-SSCEEE-EETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TE-EEEEEETTEEEE-ESST
T ss_pred CCCcEEEEEECC-CCcEEE-EcCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-Ce-EEEEECCCeEEE-ECCC
Confidence 345799999987 666666 4566765 33344443 11111 1112244688899976 44 444556675544 2332
Q ss_pred CeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEE
Q psy988 99 LKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVS 178 (408)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 178 (408)
++.-...... ......+..+.+.+++..++ ++.+|.|.. ....++.-...... ....+..+.+.+++.++++
T Consensus 108 G~tW~~~~~~-----~~~~~~~~~i~~~~~~~~~~-~~~~g~v~~-S~DgG~tW~~~~~~-~~~~~~~~~~~~~~~~~~~ 179 (327)
T 2xbg_A 108 GQSWSQIPLD-----PKLPGSPRLIKALGNGSAEM-ITNVGAIYR-TKDSGKNWQALVQE-AIGVMRNLNRSPSGEYVAV 179 (327)
T ss_dssp TSSCEECCCC-----TTCSSCEEEEEEEETTEEEE-EETTCCEEE-ESSTTSSEEEEECS-CCCCEEEEEECTTSCEEEE
T ss_pred CCCceECccc-----cCCCCCeEEEEEECCCCEEE-EeCCccEEE-EcCCCCCCEEeecC-CCcceEEEEEcCCCcEEEE
Confidence 3221111100 01123466777766555444 444554432 11223222222111 1224667888888877766
Q ss_pred eecCceEEE-eeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeec
Q psy988 179 GSENQCIYI-WKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIE 257 (408)
Q Consensus 179 ~~~dg~i~i-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 257 (408)
+. +|.++. .|-. + ..+..+. ......+..+.
T Consensus 180 g~-~G~~~~S~d~g-G------------~tW~~~~----------------------------------~~~~~~~~~~~ 211 (327)
T 2xbg_A 180 SS-RGSFYSTWEPG-Q------------TAWEPHN----------------------------------RTTSRRLHNMG 211 (327)
T ss_dssp ET-TSSEEEEECTT-C------------SSCEEEE----------------------------------CCSSSCEEEEE
T ss_pred EC-CCcEEEEeCCC-C------------CceeECC----------------------------------CCCCCccceeE
Confidence 64 444433 2210 0 0001000 01112233444
Q ss_pred cCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeec--cceeceeEEEEcCCCCEEEEecCCceEEEeeccccCcccccccc
Q psy988 258 PMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGY--VNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRR 335 (408)
Q Consensus 258 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 335 (408)
+.++++.++ .+.+|.+++.+...++.-..+... .....+..+.+.+++..++++. +|.| .+..+.+
T Consensus 212 ~~~~g~~~~-~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG--------- 279 (327)
T 2xbg_A 212 FTPDGRLWM-IVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGG--------- 279 (327)
T ss_dssp ECTTSCEEE-EETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTT---------
T ss_pred ECCCCCEEE-EeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCC---------
Confidence 555555444 345677776643323322222211 1112467888998888777765 6665 3333333
Q ss_pred Cccccceeee---eeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeC
Q psy988 336 DRNDFWEGIK---AHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLN 393 (408)
Q Consensus 336 ~~~~~~~~~~---~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~ 393 (408)
+....+. .+...+.++.|.+ ++. ++.++.+|.|.-++-
T Consensus 280 ---~tW~~~~~~~~~~~~~~~v~~~~----------------~~~-~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 280 ---QTWQQDVDVKKVPSNFYKILFFS----------------PDQ-GFILGQKGILLRYVT 320 (327)
T ss_dssp ---SSCEECGGGTTSSSCCCEEEEEE----------------TTE-EEEECSTTEEEEECC
T ss_pred ---cccEEcCccCCCCCCeEEEEEEC----------------CCc-eEEEcCCceEEEEcC
Confidence 1222222 1234577888875 554 556667998877764
No 286
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.45 E-value=0.00053 Score=58.74 Aligned_cols=234 Identities=12% Similarity=0.005 Sum_probs=127.8
Q ss_pred EEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEee-CCCeEEEEEccCcc----cceee
Q psy988 81 FAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTS-NDSRIRLYDLRDLN----LSCKY 155 (408)
Q Consensus 81 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~----~~~~~ 155 (408)
+|+.+ ....|+..++.......... ....+..++|++.+..|+.+. ..+.|+.+++.... ....+
T Consensus 85 ~ll~~-~~~~I~~i~l~~~~~~~~~~---------~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~ 154 (400)
T 3p5b_L 85 YLFFT-NRHEVRKMTLDRSEYTSLIP---------NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI 154 (400)
T ss_dssp EEEEE-ETTEEEEECTTSCSCEEEEC---------SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEE
T ss_pred eeEEe-ccceeEEEccCCcceeEecc---------ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEE
Confidence 44444 45788888888665432211 124688999999777777764 46789889886522 22222
Q ss_pred cCccccccceEEEEecCCCEEE-EeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeec
Q psy988 156 KGYVNVSSQIKASFSHDGKYIV-SGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQM 234 (408)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 234 (408)
.. ....+..+++.+.+..|+ +-...+.|.+.++....... .+.
T Consensus 155 ~~--~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~------------l~~---------------------- 198 (400)
T 3p5b_L 155 SR--DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKT------------LFR---------------------- 198 (400)
T ss_dssp CS--SCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEE------------EEE----------------------
T ss_pred eC--CCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEE------------EEe----------------------
Confidence 21 122355688887444444 44456678777764321110 000
Q ss_pred CCCCCCCceeeecCCCceeeeeccCCCCCeEEEec--CCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEe
Q psy988 235 EPDKSESTGYVLNATGRKISGIEPMPGEDKILVTS--NDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSG 312 (408)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 312 (408)
.....+..+++.|.+.+|+... ..+.|...++........... .......+++++++..|+.+
T Consensus 199 -------------~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~--~l~~P~glavd~~~~~lY~a 263 (400)
T 3p5b_L 199 -------------ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE--NIQWPNGITLDLLSGRLYWV 263 (400)
T ss_dssp -------------CSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECS--SCSCEEEEEEETTTTEEEEE
T ss_pred -------------CCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEEC--CCCceEEEEEEeCCCEEEEE
Confidence 1112234455555444444432 236788888764333322222 22355689999887777665
Q ss_pred c-CCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEE
Q psy988 313 S-ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVF 391 (408)
Q Consensus 313 ~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw 391 (408)
. ..+.|..+++..... ..+...........++++. .+.++.+....+.|..+
T Consensus 264 D~~~~~I~~~d~dG~~~----------~~~~~~~~~l~~P~gl~v~-----------------~~~lywtd~~~~~V~~~ 316 (400)
T 3p5b_L 264 DSKLHSISSIDVNGGNR----------KTILEDEKRLAHPFSLAVF-----------------EDKVFWTDIINEAIFSA 316 (400)
T ss_dssp ETTTTEEEEEETTSCCC----------EEEEECSSTTSSEEEEEEE-----------------TTEEEEEESSSCSEEEE
T ss_pred ECCCCEEEEEeCCCCcc----------EEEEeCCCCCCCCEEEEEe-----------------CCEEEEecCCCCeEEEE
Confidence 4 467899999865311 1111110111233466663 45566676667888888
Q ss_pred eCCCCCCcccc
Q psy988 392 LNKTKPKHSSL 402 (408)
Q Consensus 392 ~~~~~~~~~~~ 402 (408)
+..+++....+
T Consensus 317 ~~~~G~~~~~i 327 (400)
T 3p5b_L 317 NRLTGSDVNLL 327 (400)
T ss_dssp ESSSCCCCEEE
T ss_pred EcCCCCceEEE
Confidence 87777655443
No 287
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.42 E-value=0.0013 Score=61.38 Aligned_cols=231 Identities=9% Similarity=-0.046 Sum_probs=124.1
Q ss_pred EEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEE-EEecCCEEEEEeccCCeeeEEEEEeecccccc
Q psy988 37 YFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAV-VGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNA 115 (408)
Q Consensus 37 ~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 115 (408)
+|+.+ ....|+..++...... .+......+..++|.+....|+ +-...+.|+.+++............. ..
T Consensus 397 ~Ll~a-n~~~Ir~i~l~~~~~~---~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi----~~ 468 (791)
T 3m0c_C 397 YLFFT-NRHEVRKMTLDRSEYT---SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI----SR 468 (791)
T ss_dssp EEEEE-CBSSEEEECTTSCCCE---EEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE----CS
T ss_pred ccccc-cccceeEeeccCCcce---eeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEE----ec
Confidence 34443 3467888888776554 2333345678999998555554 44456788888887532100000000 00
Q ss_pred CCCCeEEEeeCCCCCeEEEe-eCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeec--CceEEEeeecc
Q psy988 116 TGRKISGIEPMPGEDKILVT-SNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSE--NQCIYIWKTHH 192 (408)
Q Consensus 116 ~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--dg~i~i~d~~~ 192 (408)
.......|++.+.++.|+.+ ...+.|.+.++........+.. .......+++.|.+.+|+.+.. .+.|...++..
T Consensus 469 ~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~--~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG 546 (791)
T 3m0c_C 469 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE--NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG 546 (791)
T ss_dssp SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEEC--TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred CCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeC--CCCCcceEEEecCCCCEEEecCCCCCeEEEEecCC
Confidence 12356778888877777766 4578999999875443222222 2233667899997666666543 25666666542
Q ss_pred ceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEe-cCC
Q psy988 193 DYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVT-SND 271 (408)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d 271 (408)
.... .+ ....-..+..|++++.+..|+.+ ...
T Consensus 547 ~~~~-------------~l----------------------------------v~~~l~~P~GLavD~~~~~LYwaD~~~ 579 (791)
T 3m0c_C 547 VDIY-------------SL----------------------------------VTENIQWPNGITLDLLSGRLYWVDSKL 579 (791)
T ss_dssp CCEE-------------EE----------------------------------ECSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred CceE-------------EE----------------------------------EeCCCCCceEEEEecCCCeEEEEeCCC
Confidence 1110 00 00111234556666555555554 456
Q ss_pred CeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEE-EecCCceEEEeecccc
Q psy988 272 SRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIV-SGSENQCIYIWKTHHD 326 (408)
Q Consensus 272 ~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~iw~~~~~ 326 (408)
+.|..+++........+...........|++. +.+|+ +-...+.|...+..++
T Consensus 580 ~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG 633 (791)
T 3m0c_C 580 HSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTG 633 (791)
T ss_dssp TEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTC
T ss_pred CcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCC
Confidence 78999998654443333322212233455553 33444 4445677877776555
No 288
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.41 E-value=0.00025 Score=61.44 Aligned_cols=156 Identities=15% Similarity=0.185 Sum_probs=92.4
Q ss_pred CeEEEeeCCC--CCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecCc-----eEEEeeec
Q psy988 119 KISGIEPMPG--EDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQ-----CIYIWKTH 191 (408)
Q Consensus 119 ~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~ 191 (408)
....+++.|+ +..|+++...+.|+.+|+.++....... ....+..++++++|+ |+.+...+ .+..++..
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~---~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~ 215 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT---NIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRA 215 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC---CCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGG
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec---CCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECC
Confidence 5678999984 5667776555889999998776544333 223366899999999 55554322 12222211
Q ss_pred cceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCC-CCCeEEEecC
Q psy988 192 HDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMP-GEDKILVTSN 270 (408)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~ 270 (408)
.. +.. . ..+ ........++++| ++..+++-..
T Consensus 216 ~~-----------------~~~---~-~~~--------------------------~~~~~P~giavd~~~G~lyv~d~~ 248 (433)
T 4hw6_A 216 SG-----------------FTE---R-LSL--------------------------CNARGAKTCAVHPQNGKIYYTRYH 248 (433)
T ss_dssp GT-----------------TCC---E-EEE--------------------------EECSSBCCCEECTTTCCEEECBTT
T ss_pred CC-----------------eec---c-ccc--------------------------cccCCCCEEEEeCCCCeEEEEECC
Confidence 00 000 0 000 0123455677888 5655556567
Q ss_pred CCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEE-ecCCceEEEeeccc
Q psy988 271 DSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVS-GSENQCIYIWKTHH 325 (408)
Q Consensus 271 d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~iw~~~~ 325 (408)
++.|+.+|..++.....+...........++|+|+|++|+. -...+.|+.++...
T Consensus 249 ~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~ 304 (433)
T 4hw6_A 249 HAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNR 304 (433)
T ss_dssp CSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCT
T ss_pred CCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCC
Confidence 78999999887766333322211122346999999995554 44567899988753
No 289
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.37 E-value=0.00069 Score=63.10 Aligned_cols=179 Identities=12% Similarity=0.013 Sum_probs=110.8
Q ss_pred eEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCc--eeeeeecCCceeeEEEEEecCCCE
Q psy988 4 TVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKV--AVWNEVEGQTKLITAANFCENGKF 81 (408)
Q Consensus 4 ~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~ 81 (408)
.|+..++...+..........+..|+|++.++.++++-...+.|+.+++..... .....+.........|++.+.+..
T Consensus 405 ~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~ 484 (791)
T 3m0c_C 405 EVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN 484 (791)
T ss_dssp SEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTE
T ss_pred ceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCc
Confidence 466666666655555556677889999984455555555668899999875321 111233323445678889877755
Q ss_pred EE-EEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeC--CCeEEEEEccCcccceeecCc
Q psy988 82 AV-VGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSN--DSRIRLYDLRDLNLSCKYKGY 158 (408)
Q Consensus 82 l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~ 158 (408)
|+ +-...+.|.+.+++......... ........|++.|.+..|+.+.. .+.|...++........+..
T Consensus 485 LY~tD~~~~~I~v~~ldG~~~~~l~~--------~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~- 555 (791)
T 3m0c_C 485 IYWTDSVLGTVSVADTKGVKRKTLFR--------ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE- 555 (791)
T ss_dssp EEEEETTTTEEEEEETTSSSEEEEEE--------CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECS-
T ss_pred EEEEecCCCeEEEEeCCCCeEEEEEe--------CCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeC-
Confidence 55 44556899999988654322221 11135789999998777777753 36788888875433322222
Q ss_pred cccccceEEEEecCCCEEEEee-cCceEEEeeecc
Q psy988 159 VNVSSQIKASFSHDGKYIVSGS-ENQCIYIWKTHH 192 (408)
Q Consensus 159 ~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~ 192 (408)
.......+++++.+..|+.+. ....|..+++..
T Consensus 556 -~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG 589 (791)
T 3m0c_C 556 -NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 589 (791)
T ss_dssp -SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred -CCCCceEEEEecCCCeEEEEeCCCCcEEEEecCC
Confidence 223466799998777777664 345788887743
No 290
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.34 E-value=0.0009 Score=56.20 Aligned_cols=106 Identities=13% Similarity=0.114 Sum_probs=61.4
Q ss_pred eeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCC---CCeEEEeeC-C-----
Q psy988 68 KLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPG---EDKILVTSN-D----- 138 (408)
Q Consensus 68 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~-d----- 138 (408)
.....++|.|+|++ +++..+|.|.+++ +++..... ..............++++|+ +..|+++.. .
T Consensus 31 ~~P~~ia~~pdG~l-~V~e~~g~I~~i~--~g~~~~~~---~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~ 104 (352)
T 2ism_A 31 EVPWALAFLPDGGM-LIAERPGRIRLFR--EGRLSTYA---ELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLR 104 (352)
T ss_dssp SCEEEEEECTTSCE-EEEETTTEEEEEE--TTEEEEEE---ECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSE
T ss_pred CCceEEEEcCCCeE-EEEeCCCeEEEEE--CCCccEee---cceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCc
Confidence 34678999999985 4456679999998 33321111 11111112346889999998 666666543 2
Q ss_pred CeEEEEEccCccc-----c-eeecC-ccccccceEEEEecCCCEEEEe
Q psy988 139 SRIRLYDLRDLNL-----S-CKYKG-YVNVSSQIKASFSHDGKYIVSG 179 (408)
Q Consensus 139 g~i~i~d~~~~~~-----~-~~~~~-~~~~~~~~~~~~~~~~~~l~~~ 179 (408)
+.|..++...... + ..+.. .........++|.|+|...++.
T Consensus 105 ~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~ 152 (352)
T 2ism_A 105 NQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTT 152 (352)
T ss_dssp EEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEEC
T ss_pred cEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEE
Confidence 5788888764321 1 11221 0111123468999999765554
No 291
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.32 E-value=0.00019 Score=58.90 Aligned_cols=178 Identities=12% Similarity=0.230 Sum_probs=108.4
Q ss_pred ceEEEEeccCCeeEeEEEeCCceEEEEEcCCC----CC---EEEEEeC---CCcEEEEecC--CCCceeeeeecC-----
Q psy988 3 KTVRLWHISRKECLCCFQHIDFVTAICFHPRD----DR---YFLSGSL---DGKLRLWNIP--DKKVAVWNEVEG----- 65 (408)
Q Consensus 3 g~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~----~~---~l~t~~~---dg~i~iw~~~--~~~~~~~~~~~~----- 65 (408)
+-+.+||+ +|+.++.+.. +.++.+..-| + ++ ++++... +++|.+|++. ++.+. .+..
T Consensus 50 ~gL~Vydl-~G~~l~~~~~-g~~nnVD~r~-~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~---~i~~~~~pv 123 (355)
T 3amr_A 50 SGLVVYSL-DGKMLHSYNT-GKLNNVDIRY-DFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ---SMTDPDHPI 123 (355)
T ss_dssp TEEEEEET-TSCEEEEECC-SCEEEEEEEE-EEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEE---ECSCTTSCE
T ss_pred CCEEEEcC-CCcEEEEccC-CCcccEEEec-ccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCcee---eccccccCc
Confidence 56899999 7888887754 6677777766 3 22 2333333 4789999774 44322 2211
Q ss_pred -Cc-eeeEEEEE--ecC-CC-EEEEEecCCEEEEEeccC---CeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEee
Q psy988 66 -QT-KLITAANF--CEN-GK-FAVVGSYDGRCIFYTTDQ---LKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTS 136 (408)
Q Consensus 66 -~~-~~v~~~~~--~~~-~~-~l~~~~~dg~i~iw~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 136 (408)
.. ..+..+++ +|. +. ++++...+|.+..|++.. +... ....+.+. ..+.+..+...+....|+++-
T Consensus 124 ~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~-~~lVR~f~----lgsq~EgcvvDd~~g~Lyv~e 198 (355)
T 3amr_A 124 ATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYIS-GKKVRAFK----MNSQTEGMAADDEYGRLYIAE 198 (355)
T ss_dssp ECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEE-EEEEEEEE----CSSCEEEEEEETTTTEEEEEE
T ss_pred CCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCccc-ceEEEEec----CCCCcceEEEcCCCCeEEEec
Confidence 11 45666777 664 43 688888899999999843 2111 11122211 124788899999899999999
Q ss_pred CCCeEEEEEcc-----CcccceeecCccccccceEEEE--ecCCC-EEEEee-cCceEEEeeec
Q psy988 137 NDSRIRLYDLR-----DLNLSCKYKGYVNVSSQIKASF--SHDGK-YIVSGS-ENQCIYIWKTH 191 (408)
Q Consensus 137 ~dg~i~i~d~~-----~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~l~~~~-~dg~i~i~d~~ 191 (408)
++..|..++.+ +++.+..+....-...+-.+++ .++++ +|++++ .+....+||.+
T Consensus 199 Ed~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 199 EDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp TTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred ccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 98777777754 2334433322111112444555 55665 666666 46689999985
No 292
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.28 E-value=0.0009 Score=53.93 Aligned_cols=269 Identities=12% Similarity=0.086 Sum_probs=156.1
Q ss_pred eEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEE
Q psy988 4 TVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAV 83 (408)
Q Consensus 4 ~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 83 (408)
+|.|-|+.++..... ..-.--+.-.+| ..+.||.=. ..++.|+|+++.+......+ ...|.-=.|-.+. .|+
T Consensus 50 ~VvIiDl~n~~~~~R--rpi~AdsAIMnP-~~~ViALra-g~~LQiFnletK~klks~~~---~e~VvfWkWis~~-~L~ 121 (365)
T 2xzh_A 50 QVVIIDMNDPSNPIR--RPISADSAIMNP-ASKVIALKA-GKTLQIFNIEMKSKMKAHTM---TDDVTFWKWISLN-TVA 121 (365)
T ss_dssp EEEEEETTSTTSCEE--EECCCSEEEECS-SSSEEEEEE-TTEEEEEETTTTEEEEEEEC---SSCEEEEEECSSS-EEE
T ss_pred EEEEEECCCCCCccc--cccccceeeeCC-CccEEEEec-CCeEEEechHHhhhhcceec---CCccEEEEecCCC-eEE
Confidence 456666665544322 222223455689 788777765 57899999999876633333 2356555665443 344
Q ss_pred EEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeC-------CCeEEEEEccCcccceeec
Q psy988 84 VGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSN-------DSRIRLYDLRDLNLSCKYK 156 (408)
Q Consensus 84 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------dg~i~i~d~~~~~~~~~~~ 156 (408)
-.+ +..|.-|+++..........+... . ....|..-..+++.++++..+- .|.+.+|..+.+ ..+.+.
T Consensus 122 lVT-~taVyHWs~~~~s~P~kvFdR~~~-L--~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ie 196 (365)
T 2xzh_A 122 LVT-DNAVYHWSMEGESQPVKMFDRHSS-L--AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIE 196 (365)
T ss_dssp EEE-SSEEEEEESSTTCCCEEEEECCGG-G--TTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEEC
T ss_pred EEc-CCcEEEEcccCCCCCceeeecchh-c--ccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc-ccceee
Confidence 433 568999999864433332222111 1 2357888888999998766432 367889988754 344555
Q ss_pred CccccccceEEEEecCC----C-EEEEeec---CceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcc
Q psy988 157 GYVNVSSQIKASFSHDG----K-YIVSGSE---NQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPE 228 (408)
Q Consensus 157 ~~~~~~~~~~~~~~~~~----~-~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 228 (408)
+|... . ..+-.+| . .|+.+.. .+.+++.++.... .. -.........+.|.|+
T Consensus 197 Ghaa~--F--~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~---------~~-----~~~f~kk~vdi~fppe-- 256 (365)
T 2xzh_A 197 GHAAS--F--AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPP---------TG-----NQPFPKKAVDVFFPPE-- 256 (365)
T ss_dssp CSEEE--E--EEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCC---------TT-----CCCCCCEEEEECCCTT--
T ss_pred eeeee--e--EEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCC---------CC-----CCCcccccceeeCCcc--
Confidence 55431 0 1121122 1 2332322 2577777764310 00 0111222444445443
Q ss_pred eeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCE
Q psy988 229 LIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKY 308 (408)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 308 (408)
.....+.++..++....++.-+.-|.|++||++++.++..-+-... .|...+.+.+..-
T Consensus 257 -------------------a~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS~d--~iF~ta~~~~~~G 315 (365)
T 2xzh_A 257 -------------------AQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGE--TIFVTAPHEATAG 315 (365)
T ss_dssp -------------------CTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEEEGGGTE
T ss_pred -------------------ccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccCCC--ceEEecccCCCCc
Confidence 2344566777888888888899999999999999998877665444 3433344444444
Q ss_pred EEEecCCceEEEeecccc
Q psy988 309 IVSGSENQCIYIWKTHHD 326 (408)
Q Consensus 309 l~~~~~dg~i~iw~~~~~ 326 (408)
++.....|.|.--.++..
T Consensus 316 i~~Vnr~GqVl~v~v~~~ 333 (365)
T 2xzh_A 316 IIGVNRKGQVLSVCVEEE 333 (365)
T ss_dssp EEEEETTCEEEEEEECTT
T ss_pred EEEEcCCCEEEEEEECcc
Confidence 555567887777776654
No 293
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.26 E-value=5.7e-06 Score=76.23 Aligned_cols=176 Identities=11% Similarity=0.004 Sum_probs=102.6
Q ss_pred ceEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEE-eCCCcEEEEecCC----CCceeeeeecCCceeeEEEEEec
Q psy988 3 KTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSG-SLDGKLRLWNIPD----KKVAVWNEVEGQTKLITAANFCE 77 (408)
Q Consensus 3 g~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~-~~dg~i~iw~~~~----~~~~~~~~~~~~~~~v~~~~~~~ 77 (408)
+.|++.++.+.+....+.....+..|+|++ .+..|+.+ ...+.|+.+++.+ .... ..+.........+++.+
T Consensus 386 ~~I~~id~~~~~~~~~~~~~~~p~gla~d~-~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~--~~i~~~~~~P~glavD~ 462 (699)
T 1n7d_A 386 HEVRKMTLDRSEYTSLIPNLRNVVALDTEV-ASNRIYWSDLSQRMICSTQLDRAHGVSSYD--TVISRDIQAPDGLAVDW 462 (699)
T ss_dssp TC-CEECTTSCCEECCSCCCTTCCCCEEET-TTTEEEECCTTTTSBEEEESCCCCC-CCCC--CBCCSCC--CCCEECCC
T ss_pred cceEEEeCCCCcceeeeccCcceEEEcccc-ccCeEEEEecCCCeEEEEecCCCCCCcceE--EEEeCCCCCcceEEEEe
Confidence 356677777666655554445678899998 55555544 4568899999875 2221 12222223355678875
Q ss_pred CC-CEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeC--CCeEEEEEccCccccee
Q psy988 78 NG-KFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSN--DSRIRLYDLRDLNLSCK 154 (408)
Q Consensus 78 ~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~ 154 (408)
.+ +++++-...+.|.++++.......... ........+++.|.+.+|+.+.. .+.|..+++..... ..
T Consensus 463 ~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~--------~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~-~~ 533 (699)
T 1n7d_A 463 IHSNIYWTDSVLGTVSVADTKGVKRKTLFR--------EQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YS 533 (699)
T ss_dssp SSSBCEECCTTTSCEEEEBSSSCCEEEECC--------CSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC-CE
T ss_pred eCCcEEEEeccCCeEEEEecCCCceEEEEe--------CCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe-eE
Confidence 44 444444556889999987654222111 01124577889987777766643 36788887754322 22
Q ss_pred ecCccccccceEEEEecCCCEEEEee-cCceEEEeeec
Q psy988 155 YKGYVNVSSQIKASFSHDGKYIVSGS-ENQCIYIWKTH 191 (408)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~ 191 (408)
+.. ........++++|++..|+.+. ..+.|..+++.
T Consensus 534 l~~-~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~d 570 (699)
T 1n7d_A 534 LVT-ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 570 (699)
T ss_dssp ESC-SSCSSCCCEEECTTTCCEEEEETTTTEEEEECSS
T ss_pred EEe-CCCCCccEEEEeccCCEEEEEecCCCeEEEEccC
Confidence 211 1123355689998876665554 45678888874
No 294
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.25 E-value=0.0013 Score=54.34 Aligned_cols=230 Identities=13% Similarity=0.018 Sum_probs=127.1
Q ss_pred EEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEE-EEecCCEEEEEeccCCeeeEEEEEeecccccc
Q psy988 37 YFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAV-VGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNA 115 (408)
Q Consensus 37 ~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 115 (408)
+|+.+. ...|+..++....... ..+......+.++.|.+.+..|+ +-...+.|..++..+...........
T Consensus 6 ~ll~~~-~~~I~~i~l~~~~~~~-~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~------ 77 (318)
T 3sov_A 6 LLLYAN-RRDLRLVDATNGKENA-TIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSG------ 77 (318)
T ss_dssp EEEEEC-EEEEEEEETTCTTSCC-EEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEEC------
T ss_pred EEEEEc-cCeEEEEECCCCceEE-EEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCC------
Confidence 344433 4679999998764221 12222234577899998655554 44556889999987653211111111
Q ss_pred CCCCeEEEeeCCCCCeEEEe-eCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeec--CceEEEeeecc
Q psy988 116 TGRKISGIEPMPGEDKILVT-SNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSE--NQCIYIWKTHH 192 (408)
Q Consensus 116 ~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--dg~i~i~d~~~ 192 (408)
-.....+++.+.+..|+.+ ...+.|.++++........... .......+++.|.+..|+.+.. .+.|...++..
T Consensus 78 -l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~--~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG 154 (318)
T 3sov_A 78 -LLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQ--ELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG 154 (318)
T ss_dssp -CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS--SCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS
T ss_pred -CCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeC--CCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC
Confidence 1246678888766666655 4567899999875432222222 2233567899987666666552 45666666532
Q ss_pred ceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEe-cCC
Q psy988 193 DYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVT-SND 271 (408)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d 271 (408)
.... .+ ....-.....++++|++..|+.+ +..
T Consensus 155 ~~~~-------------~~----------------------------------~~~~l~~Pnglavd~~~~~lY~aD~~~ 187 (318)
T 3sov_A 155 SSRF-------------II----------------------------------INSEIYWPNGLTLDYEEQKLYWADAKL 187 (318)
T ss_dssp CSCE-------------EE----------------------------------ECSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred CCeE-------------EE----------------------------------EECCCCCccEEEEeccCCEEEEEECCC
Confidence 1100 00 00111234556666655545544 566
Q ss_pred CeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccC
Q psy988 272 SRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDY 327 (408)
Q Consensus 272 ~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 327 (408)
+.|..+|+............ ......+++.. +.++.+-...+.|..++..++.
T Consensus 188 ~~I~~~d~dG~~~~~~~~~~--~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~ 240 (318)
T 3sov_A 188 NFIHKSNLDGTNRQAVVKGS--LPHPFALTLFE-DILYWTDWSTHSILACNKYTGE 240 (318)
T ss_dssp TEEEEEETTSCSCEEEECSC--CSCEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred CEEEEEcCCCCceEEEecCC--CCCceEEEEeC-CEEEEEecCCCeEEEEECCCCC
Confidence 88999998743332222211 22344666643 3444555567889988886653
No 295
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.24 E-value=0.0027 Score=57.76 Aligned_cols=177 Identities=8% Similarity=0.013 Sum_probs=106.3
Q ss_pred ceEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCE
Q psy988 3 KTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKF 81 (408)
Q Consensus 3 g~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 81 (408)
+.|..+++........+. -......+++.+.+++++++-...+.|.+.+++...... .....-.....+++.|...+
T Consensus 59 ~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~--l~~~~l~~P~~iavdp~~G~ 136 (628)
T 4a0p_A 59 KTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV--LVWKDLDSPRALALDPAEGF 136 (628)
T ss_dssp TEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE--EECSSCCCEEEEEEETTTTE
T ss_pred CeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE--EEeCCCCCcccEEEccCCCe
Confidence 445555554433333333 224567888887355556666667889999987654332 22233345789999986555
Q ss_pred EEEEec--CCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEee-CCCeEEEEEccCcccceeecCc
Q psy988 82 AVVGSY--DGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTS-NDSRIRLYDLRDLNLSCKYKGY 158 (408)
Q Consensus 82 l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~ 158 (408)
|+.... .+.|...+++......... .......++++++++.|+.+. ..+.|..+|+..... ..+...
T Consensus 137 lY~tD~g~~~~I~r~~~dG~~~~~l~~---------~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~ 206 (628)
T 4a0p_A 137 MYWTEWGGKPKIDRAAMDGSERTTLVP---------NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADD 206 (628)
T ss_dssp EEEEECSSSCEEEEEETTSCSCEEEEC---------SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEEC
T ss_pred EEEeCCCCCCEEEEEeCCCCceEEEEC---------CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeecc
Confidence 655542 5678888877654322211 123678999999888888874 467899999875443 233221
Q ss_pred cccccceEEEEecCCCEEEEeecCceEEEeeeccce
Q psy988 159 VNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDY 194 (408)
Q Consensus 159 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 194 (408)
......+++.. +..+++-...+.|...|..++.
T Consensus 207 --l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 207 --LPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQ 239 (628)
T ss_dssp --CSCEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred --CCCceEEEEEC-CEEEEecCCCCEEEEEECCCCC
Confidence 22345666654 3344444457788888865543
No 296
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=98.24 E-value=0.0015 Score=54.81 Aligned_cols=233 Identities=11% Similarity=0.044 Sum_probs=118.9
Q ss_pred eeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCC---CCeEEEeeC----C--
Q psy988 68 KLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPG---EDKILVTSN----D-- 138 (408)
Q Consensus 68 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~----d-- 138 (408)
.....++|.|+|+ |+++..+|.|++++. +++ ... ...............++++|+ +..|+++.. +
T Consensus 29 ~~P~~ia~~pdG~-l~V~e~~g~I~~~d~-~G~--~~~--~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~ 102 (354)
T 3a9g_A 29 EVPWSIAPLGGGR-YLVTERPGRLVLISP-SGK--KLV--ASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGH 102 (354)
T ss_dssp SCEEEEEEEETTE-EEEEETTTEEEEECS-SCE--EEE--EECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGC
T ss_pred CCCeEEEEcCCCe-EEEEeCCCEEEEEeC-CCc--eEe--eccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCC
Confidence 3468899999998 555566799999973 333 111 111111112246889999997 666666543 2
Q ss_pred --CeEEEEEccCc--c---c--c-eeecCccccccceEEEEecCCCEEEEeecC-------------ceEEEeeecccee
Q psy988 139 --SRIRLYDLRDL--N---L--S-CKYKGYVNVSSQIKASFSHDGKYIVSGSEN-------------QCIYIWKTHHDYA 195 (408)
Q Consensus 139 --g~i~i~d~~~~--~---~--~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-------------g~i~i~d~~~~~~ 195 (408)
+.|..|+.... . . + ..+... .......++|.|||...++.+.. |.|.-++....
T Consensus 103 ~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~-~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~-- 179 (354)
T 3a9g_A 103 IRNRVIRGRLDGSTFKLKEVKTLIDGIPGA-YIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGR-- 179 (354)
T ss_dssp EEEEEEEEEECSSSCCEEEEEEEEEEEECC-SSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSC--
T ss_pred cceEEEEEEECCCCcCcCccEEEEEcCCCC-CCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCC--
Confidence 56777877643 1 1 1 111111 11123468999999866654321 34444443211
Q ss_pred eeeecccCCCccccccccccceEEEEEEeC-CcceeeeecCCCCCC--------------------------CceeeecC
Q psy988 196 KFSSVRRDRNDFWEGIKAHNAVVTCAVFAP-CPELIIAQMEPDKSE--------------------------STGYVLNA 248 (408)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~--------------------------~~~~~~~~ 248 (408)
... .........+...-.....++|+| ++...++........ .....+..
T Consensus 180 ~p~---~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~ 256 (354)
T 3a9g_A 180 PPA---DNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGS 256 (354)
T ss_dssp CCT---TSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTT
T ss_pred CCC---CCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCC
Confidence 000 000000011111112235688888 565554432221100 01111111
Q ss_pred CCceeeeeccC-------CCCCeEEEecCCCeEEEEEcCCC-eee--eEEeeccceeceeEEEEcCCCCEEEEec
Q psy988 249 TGRKISGIEPM-------PGEDKILVTSNDSRIRLYDLRDL-NLS--CKYKGYVNVSSQIKASFSHDGKYIVSGS 313 (408)
Q Consensus 249 ~~~~i~~~~~~-------~~~~~l~~~~~d~~i~i~d~~~~-~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 313 (408)
....+..++|. .+|.++++....+.|...++... +.. ..+.. .....+..+++.|||.+.++..
T Consensus 257 ~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~-~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 257 ETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFK-NVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp CCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECT-TTSCCEEEEEECTTSCEEEEEC
T ss_pred CCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeecc-CCCCCeeEEEECCCCcEEEEEe
Confidence 23346667763 46777777677788888888753 222 12211 1134677899999997666653
No 297
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.17 E-value=0.0067 Score=59.22 Aligned_cols=94 Identities=15% Similarity=0.193 Sum_probs=61.3
Q ss_pred ceEEEEeccCCeeEe--EEEeCCceEEEEEcCC-----CCCEEEEEeC-CCcEEEEecCCCCceeeeeecC--CceeeEE
Q psy988 3 KTVRLWHISRKECLC--CFQHIDFVTAICFHPR-----DDRYFLSGSL-DGKLRLWNIPDKKVAVWNEVEG--QTKLITA 72 (408)
Q Consensus 3 g~i~vwd~~~~~~~~--~~~h~~~v~~~~~sp~-----~~~~l~t~~~-dg~i~iw~~~~~~~~~~~~~~~--~~~~v~~ 72 (408)
+.+.++.++.++... ...-.+.|.|+++.|. ..++++.|.. |++|+|+++.+.+......+.. -...+.-
T Consensus 532 ~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l 611 (1158)
T 3ei3_A 532 RALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILM 611 (1158)
T ss_dssp TEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEE
T ss_pred CEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEE
Confidence 455666666554322 2235678999999862 1478999997 9999999998766554344432 2233333
Q ss_pred EEEecCCCEEEEEecCCEEEEEecc
Q psy988 73 ANFCENGKFAVVGSYDGRCIFYTTD 97 (408)
Q Consensus 73 ~~~~~~~~~l~~~~~dg~i~iw~~~ 97 (408)
+.+ ....+|..|-.||.+.-+.++
T Consensus 612 ~~~-~~~~~L~igl~dG~l~~~~~d 635 (1158)
T 3ei3_A 612 TTF-ESSHYLLCALGDGALFYFGLN 635 (1158)
T ss_dssp EEE-TTEEEEEEEETTSEEEEEEEC
T ss_pred EEe-CCCcEEEEEeCCCeEEEEEEc
Confidence 333 234678899999998776655
No 298
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.16 E-value=1.8e-05 Score=73.03 Aligned_cols=226 Identities=9% Similarity=-0.048 Sum_probs=117.7
Q ss_pred CCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEe-cCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEE
Q psy988 44 DGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGS-YDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISG 122 (408)
Q Consensus 44 dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 122 (408)
.+.|+..++.+..... .+ .....+..++|.+.+..|+.+. ..+.|+.+++.+...... .... ..........
T Consensus 385 ~~~I~~id~~~~~~~~--~~-~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~--~~~~--i~~~~~~P~g 457 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTS--LI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS--YDTV--ISRDIQAPDG 457 (699)
T ss_dssp TTC-CEECTTSCCEEC--CS-CCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CC--CCCB--CCSCC--CCC
T ss_pred ccceEEEeCCCCccee--ee-ccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcc--eEEE--EeCCCCCcce
Confidence 3678888887765442 22 2223467889998776666554 457888888775110000 0000 0001123456
Q ss_pred EeeCCCCCeEEEe-eCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeec--CceEEEeeeccceeeeee
Q psy988 123 IEPMPGEDKILVT-SNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSE--NQCIYIWKTHHDYAKFSS 199 (408)
Q Consensus 123 ~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~ 199 (408)
+++.+.+..|+.+ ...+.|.++++........+.. .......++++|.+.+|+.+.. .+.|..+++......
T Consensus 458 lavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~--~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~--- 532 (699)
T 1n7d_A 458 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE--QGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY--- 532 (699)
T ss_dssp EECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCC--SSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCC---
T ss_pred EEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeC--CCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCee---
Confidence 7887656566555 4567899999875433222221 1123456788886665555442 256666655321000
Q ss_pred cccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEe-cCCCeEEEEE
Q psy988 200 VRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVT-SNDSRIRLYD 278 (408)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~i~d 278 (408)
. +....-.....|+++|++..|+.+ ...+.|..++
T Consensus 533 ----------~----------------------------------l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d 568 (699)
T 1n7d_A 533 ----------S----------------------------------LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSID 568 (699)
T ss_dssp ----------E----------------------------------ESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEEC
T ss_pred ----------E----------------------------------EEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEc
Confidence 0 000111234567777765555444 5668899999
Q ss_pred cCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeecccc
Q psy988 279 LRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHD 326 (408)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 326 (408)
+........+...........+++..+ .++++-...+.|..++..++
T Consensus 569 ~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G 615 (699)
T 1n7d_A 569 VNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTG 615 (699)
T ss_dssp SSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTE
T ss_pred cCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCC
Confidence 874333222221111112334555443 34445556678998887654
No 299
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.16 E-value=0.0015 Score=53.75 Aligned_cols=208 Identities=13% Similarity=0.183 Sum_probs=113.6
Q ss_pred CCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEec----CCCE--EE-Eeec---CceEEEeeeccceeeee
Q psy988 129 EDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSH----DGKY--IV-SGSE---NQCIYIWKTHHDYAKFS 198 (408)
Q Consensus 129 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~--l~-~~~~---dg~i~i~d~~~~~~~~~ 198 (408)
...++.....+-+.+||+ +++.++.+.. ..+..+..-| .|+. ++ +... +++|.+|++........
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~----g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~ 114 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT----GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ 114 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEECC----SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEE
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEccC----CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCcee
Confidence 445666677789999999 7887777753 1133344333 3332 33 3333 46899997742111111
Q ss_pred ecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeecc--CCC-CC-eEEEecCCCeE
Q psy988 199 SVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEP--MPG-ED-KILVTSNDSRI 274 (408)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~-~~-~l~~~~~d~~i 274 (408)
. +.....++ ...-..+..+|+ +|. ++ ++++...+|.+
T Consensus 115 ~-----------i~~~~~pv----------------------------~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~ 155 (355)
T 3amr_A 115 S-----------MTDPDHPI----------------------------ATAINEVYGFTLYHSQKTGKYYAMVTGKEGEF 155 (355)
T ss_dssp E-----------CSCTTSCE----------------------------ECCCSSCCCEEEEECTTTCCEEEEEECSSSEE
T ss_pred e-----------ccccccCc----------------------------CCCCCCeeEEEEEecCCCCcEEEEEECCCCeE
Confidence 0 00000000 000123444555 553 33 56777888999
Q ss_pred EEEEcC-------CCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeee-e
Q psy988 275 RLYDLR-------DLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIK-A 346 (408)
Q Consensus 275 ~i~d~~-------~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~-~ 346 (408)
..|++. +.+.++++... ..+-.+...+...+|+.+-++..|..++.+.... .....+..+. +
T Consensus 156 ~q~~l~~~~~g~~~~~lVR~f~lg---sq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~-------~~~~~v~~~~~g 225 (355)
T 3amr_A 156 EQYELKADKNGYISGKKVRAFKMN---SQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGG-------SNGTVIDRADGR 225 (355)
T ss_dssp EEEEEEECTTSCEEEEEEEEEECS---SCEEEEEEETTTTEEEEEETTTEEEEEECSTTSC-------SCCEEEEEBSSS
T ss_pred EEEEEEeCCCCcccceEEEEecCC---CCcceEEEcCCCCeEEEecccceEEEEeCCcCCC-------CCceEEEEecCC
Confidence 999983 33556666543 2456788899889999999986655555332110 0012222221 1
Q ss_pred -eccceEEEEecCCchhhhhccCCCCCCCccc-EEEEEe-cCCeEEEEeCC-CCCCcccccc
Q psy988 347 -HNAVVTCAVFAPCPELIIAQMEPDKSESTGY-VLVSAD-FNGVIRVFLNK-TKPKHSSLPV 404 (408)
Q Consensus 347 -h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~~-~dg~v~iw~~~-~~~~~~~~~~ 404 (408)
....+..|+.-+.. +++ +|++++ .+.++.+||.. +.+....+++
T Consensus 226 ~l~aDvEGLai~~~~--------------~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~I 273 (355)
T 3amr_A 226 HLTRDIEGLTIYYAA--------------DGKGYLMASSQGNSSYAIYDRQGKNKYVADFRI 273 (355)
T ss_dssp SBCSCEEEEEEEECG--------------GGCEEEEEEEGGGTEEEEEESSTTCCEEEEEEE
T ss_pred ccccCcceEEEEecC--------------CCCEEEEEEcCCCCEEEEEECCCCCcEEEEEEe
Confidence 22367888884310 444 444444 57899999996 5555555543
No 300
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.15 E-value=0.00026 Score=57.58 Aligned_cols=166 Identities=5% Similarity=0.040 Sum_probs=108.0
Q ss_pred eEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecC------CceeeEEEEE---ecCCCEEEEEec--------
Q psy988 25 VTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEG------QTKLITAANF---CENGKFAVVGSY-------- 87 (408)
Q Consensus 25 v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~------~~~~v~~~~~---~~~~~~l~~~~~-------- 87 (408)
-.+++|++.++.++++.-..++|..|+...+..... .+.+ ....+..+.| .|+++++++...
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g 93 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFAD 93 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTS
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccc
Confidence 456889884454444444789999999986654432 2322 1124689999 688777775432
Q ss_pred -----CCEEEEEecc---CCeeeEEEEEeecccc----cc-CCCCeEEEeeCCCCCeEEEeeCC-CeEEEEEccCcccce
Q psy988 88 -----DGRCIFYTTD---QLKYHTQIHVRSTRGK----NA-TGRKISGIEPMPGEDKILVTSND-SRIRLYDLRDLNLSC 153 (408)
Q Consensus 88 -----dg~i~iw~~~---~~~~~~~~~~~~~~~~----~~-~~~~v~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~ 153 (408)
+..+..+|+. +++......+...... .+ .......++..++|+..++++.. +.|...+........
T Consensus 94 ~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~ 173 (334)
T 2p9w_A 94 QSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVST 173 (334)
T ss_dssp CCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEE
T ss_pred cccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEee
Confidence 6789999998 6766555543221110 00 11258899999999999988887 887777766432221
Q ss_pred ee-cC--ccccccceEEEEecCCCEEEEeecCceEEEeeec
Q psy988 154 KY-KG--YVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTH 191 (408)
Q Consensus 154 ~~-~~--~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 191 (408)
-+ .. .........++++|+|+.|++....|.+..+|+.
T Consensus 174 ~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 174 FAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp EEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred eeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence 11 11 1112235579999999998888779999999986
No 301
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.10 E-value=0.0022 Score=52.17 Aligned_cols=143 Identities=11% Similarity=0.127 Sum_probs=97.6
Q ss_pred CceEEEEeccCCeeEeE-EEe-------CCceEEEEE---cCCCCCEEEEEeC-------------CCcEEEEecC---C
Q psy988 2 DKTVRLWHISRKECLCC-FQH-------IDFVTAICF---HPRDDRYFLSGSL-------------DGKLRLWNIP---D 54 (408)
Q Consensus 2 Dg~i~vwd~~~~~~~~~-~~h-------~~~v~~~~~---sp~~~~~l~t~~~-------------dg~i~iw~~~---~ 54 (408)
.++|..||...+..... +.. ...+..|.| .| +++++++... +..|..+|+. +
T Consensus 34 ~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~t 112 (334)
T 2p9w_A 34 KGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSEN 112 (334)
T ss_dssp TTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTT
T ss_pred CCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEcccccccccccccCCCCEEEEEcCCcCCC
Confidence 57899999876644333 212 113578999 68 7777775431 5779999999 7
Q ss_pred CCceeeeeecCC-----------ceeeEEEEEecCCCEEEEEecC-CEEEEEeccCCeeeEEEEEeeccccccCCCCeEE
Q psy988 55 KKVAVWNEVEGQ-----------TKLITAANFCENGKFAVVGSYD-GRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISG 122 (408)
Q Consensus 55 ~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 122 (408)
++......+... ......++..++|+..++++.. +.|...+.+.... ........ ........+.
T Consensus 113 g~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~-~~~~~~~~--~~~~~~G~nG 189 (334)
T 2p9w_A 113 SKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTV-STFAWESG--NGGQRPGYSG 189 (334)
T ss_dssp CCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCE-EEEEECCC--CSSSCCSCSE
T ss_pred CCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEE-eeeeecCC--CcccccCcce
Confidence 766544444322 1358899999999999999988 8888887765532 22211111 1112235789
Q ss_pred EeeCCCCCeEEEeeCCCeEEEEEccC
Q psy988 123 IEPMPGEDKILVTSNDSRIRLYDLRD 148 (408)
Q Consensus 123 ~~~~~~~~~l~~~~~dg~i~i~d~~~ 148 (408)
|+++|+++.|++....|.|..+|+.+
T Consensus 190 Iv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 190 ITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp EEEETTTTEEEEESSSSSEEEEECSS
T ss_pred EEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 99999999999987799999999884
No 302
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.07 E-value=0.0045 Score=53.89 Aligned_cols=114 Identities=6% Similarity=-0.013 Sum_probs=69.2
Q ss_pred eEEEEEec-CCCEEEEEec-CCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEee-------CCCCCeEEEeeCCC-
Q psy988 70 ITAANFCE-NGKFAVVGSY-DGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEP-------MPGEDKILVTSNDS- 139 (408)
Q Consensus 70 v~~~~~~~-~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-------~~~~~~l~~~~~dg- 139 (408)
...|+|.| ++..|+.+.. .+.|++.|.++.......... .........++| +++++.|+++...+
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~-----~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~ 215 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNIN-----TIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDG 215 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCT-----TSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCT
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccC-----ccccCCCcEEEEeecccccCCCCCEEEEEeCCCC
Confidence 56889998 3555555544 467888888877654332210 011235889999 99999777775543
Q ss_pred ------eEEEEEccC-cccc-----eeecCccccccceEEEEecCCCE-EEEeecCceEEEeeec
Q psy988 140 ------RIRLYDLRD-LNLS-----CKYKGYVNVSSQIKASFSHDGKY-IVSGSENQCIYIWKTH 191 (408)
Q Consensus 140 ------~i~i~d~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~i~d~~ 191 (408)
.|.+++... +... ..+.. ......++++|++.. +++-..++.|+.+|+.
T Consensus 216 ~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~---~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~ 277 (496)
T 3kya_A 216 KGDESPSVYIIKRNADGTFDDRSDIQLIAA---YKQCNGATIHPINGELYFNSYEKGQVFRLDLV 277 (496)
T ss_dssp TGGGEEEEEEEECCTTSCCSTTSCEEEEEE---ESCCCCEEECTTTCCEEEEETTTTEEEEECHH
T ss_pred CcccCceEEEEecCCCCceeecccceeecc---CCCceEEEEcCCCCeEEEEECCCCEEEEEecc
Confidence 266666433 2222 12221 123456788995545 4455567789999986
No 303
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=98.03 E-value=0.0036 Score=51.27 Aligned_cols=148 Identities=9% Similarity=0.109 Sum_probs=76.9
Q ss_pred CCCEEEEEe-CC-----CcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecC-----CEEEEEeccCCe--
Q psy988 34 DDRYFLSGS-LD-----GKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYD-----GRCIFYTTDQLK-- 100 (408)
Q Consensus 34 ~~~~l~t~~-~d-----g~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iw~~~~~~-- 100 (408)
++.+++.|+ .+ ..+.+||..+.+......+.........+ ..++..++.|+.+ ..+.+||..+.+
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~ 91 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASV--SLHDRIYVIGGYDGRSRLSSVECLDYTADEDG 91 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEE--EETTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEE--EECCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence 556777777 33 47889998887654333222221112222 2366777777755 468899988765
Q ss_pred -eeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCC-----CeEEEEEccCcccceeecCccccccceEEEEecCCC
Q psy988 101 -YHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSND-----SRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGK 174 (408)
Q Consensus 101 -~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (408)
.... ....... .....+.+ ++..++.|+.+ ..+.+||+.+.+-...-......... .+...+++
T Consensus 92 ~W~~~---~~~p~~r---~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~--~~~~~~~~ 161 (301)
T 2vpj_A 92 VWYSV---APMNVRR---GLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGA--GLVVASGV 161 (301)
T ss_dssp CCEEE---CCCSSCC---BSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSC--EEEEETTE
T ss_pred eeEEC---CCCCCCc---cceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccc--eEEEECCE
Confidence 3322 1111111 11122222 46666666543 46889998876543321111111111 12223677
Q ss_pred EEEEeecC-----ceEEEeeeccc
Q psy988 175 YIVSGSEN-----QCIYIWKTHHD 193 (408)
Q Consensus 175 ~l~~~~~d-----g~i~i~d~~~~ 193 (408)
.++.|+.+ ..+.+||+.+.
T Consensus 162 iyv~GG~~~~~~~~~~~~~d~~~~ 185 (301)
T 2vpj_A 162 IYCLGGYDGLNILNSVEKYDPHTG 185 (301)
T ss_dssp EEEECCBCSSCBCCCEEEEETTTT
T ss_pred EEEECCCCCCcccceEEEEeCCCC
Confidence 77777654 35777776553
No 304
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=98.02 E-value=0.0043 Score=51.65 Aligned_cols=159 Identities=14% Similarity=0.149 Sum_probs=92.1
Q ss_pred ceEEEEEcCCCCCEEEEEe------------CCCcEEEEecCC--CCceeeeeecC-----CceeeEEEEEec--CCC-E
Q psy988 24 FVTAICFHPRDDRYFLSGS------------LDGKLRLWNIPD--KKVAVWNEVEG-----QTKLITAANFCE--NGK-F 81 (408)
Q Consensus 24 ~v~~~~~sp~~~~~l~t~~------------~dg~i~iw~~~~--~~~~~~~~~~~-----~~~~v~~~~~~~--~~~-~ 81 (408)
..-.+...| +|..+++++ .+|.|.++|.++ .+...+ .+.+ .......+.+.+ ++. +
T Consensus 51 G~EDi~~~~-~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l-~~~g~~~~~~~f~PhGi~~~~d~dg~~~ 128 (355)
T 3sre_A 51 GSEDLEILP-NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSEL-EIIGNTLDISSFNPHGISTFIDDDNTVY 128 (355)
T ss_dssp CCCEEEECT-TSEEEEEECCC-----------CCEEEEEETTSSSCCEEEC-EEECSSCCGGGCCEEEEEEEECTTCCEE
T ss_pred CcceeEEcC-CCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEE-EccCCCCCcCceeeeeeEEEECCCCcEE
Confidence 456677888 776555542 689999999874 333322 2222 223566777766 453 4
Q ss_pred EEEEe-c--CCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEee-----------------CCCeE
Q psy988 82 AVVGS-Y--DGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTS-----------------NDSRI 141 (408)
Q Consensus 82 l~~~~-~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----------------~dg~i 141 (408)
|+++. . +.++.+|+++........ .....+. .-...+.+.+.++|...++.. ..|.|
T Consensus 129 L~Vvnh~~~~s~ielf~~d~~~~~~~~-~~~~~g~--~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~v 205 (355)
T 3sre_A 129 LLVVNHPGSSSTVEVFKFQEEEKSLLH-LKTIRHK--LLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFV 205 (355)
T ss_dssp EEEEECSTTCCEEEEEEEETTTTEEEE-EEEECCT--TCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEE
T ss_pred EEEEECCCCCCeEEEEEEECCCCEEEE-EeccccC--CCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEE
Confidence 44443 2 467888887654322221 2222221 224688999999887666543 12445
Q ss_pred EEEEccCcccceeecCccccccceEEEEecCCCEEEEee-cCceEEEeeecc
Q psy988 142 RLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS-ENQCIYIWKTHH 192 (408)
Q Consensus 142 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~ 192 (408)
.-+|. ++...... .......++|+||++.|+.+. ..+.|+.|++..
T Consensus 206 yr~d~--~~~~~~~~---~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 206 TYYSP--NDVRVVAE---GFDFANGINISPDGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp EEECT--TCCEEEEE---EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred EEEEC--CeEEEeec---CCcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence 55554 32222111 223356799999999887765 467899999863
No 305
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=98.00 E-value=0.005 Score=51.88 Aligned_cols=269 Identities=12% Similarity=0.088 Sum_probs=156.3
Q ss_pred eEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEE
Q psy988 4 TVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAV 83 (408)
Q Consensus 4 ~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 83 (408)
+|.|-|+.++.... ...-.--+.-.+| ..+.+|-=. ..++.|+|+++........+. ..|.-=.|-.+.. |+
T Consensus 49 ~vvIiDl~~~~~~~--rrpi~AdsAIMnP-~~~iiALra-g~~lQiFnle~K~klks~~~~---e~VvfWkWis~~~-l~ 120 (494)
T 1bpo_A 49 QVVIIDMNDPSNPI--RRPISADSAIMNP-ASKVIALKA-GKTLQIFNIEMKSKMKAHTMT---DDVTFWKWISLNT-VA 120 (494)
T ss_dssp EEEEEETTSTTSCE--EEECCCSEEEECS-SSSCEEEEE-TTEEEEEETTTTEEEEEEECS---SCCCEEEEEETTE-EE
T ss_pred eEEEEECCCCCcce--ecccccceeeeCC-CCcEEEEec-CCeEEEEchHHhhhhcceecC---CCceEEEecCCCe-EE
Confidence 45566665544432 1222234566788 778777665 589999999988765333322 2455555654433 44
Q ss_pred EEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEee-------CCCeEEEEEccCcccceeec
Q psy988 84 VGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTS-------NDSRIRLYDLRDLNLSCKYK 156 (408)
Q Consensus 84 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~ 156 (408)
.. .+..|.-|+++..........+... . ....|..-..+++.++++..+ -.|.+.+|..+.+ ..+.+.
T Consensus 121 lV-T~taVyHWsi~~~s~P~kvFdR~~~-L--~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ie 195 (494)
T 1bpo_A 121 LV-TDNAVYHWSMEGESQPVKMFDRHSS-L--AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIE 195 (494)
T ss_dssp EE-CSSEEEEEESSSSCCCEEEEECCGG-G--TTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEEC
T ss_pred EE-cCCeeEEecccCCCCchhheecchh-c--ccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchhe
Confidence 33 3568999999864433332222111 1 235788888899999877543 2467889988754 344556
Q ss_pred CccccccceEEEEecCC-----CEEEEeec---CceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcc
Q psy988 157 GYVNVSSQIKASFSHDG-----KYIVSGSE---NQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPE 228 (408)
Q Consensus 157 ~~~~~~~~~~~~~~~~~-----~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 228 (408)
+|... . ..+-.+| +.+..+.. .+.+++.++..... + -.........+.|.|+
T Consensus 196 Ghaa~--F--~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~---------~-----~~~f~kk~vdv~fppe-- 255 (494)
T 1bpo_A 196 GHAAS--F--AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPT---------G-----NQPFPKKAVDVFFPPE-- 255 (494)
T ss_dssp CSEEE--E--EEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCT---------T-----CCCCCCEEEECCCCTT--
T ss_pred eeeee--e--EEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCcc---------C-----CCCccceeeeeeCCcc--
Confidence 65432 1 1222222 12333322 26777777743100 0 0111222334444443
Q ss_pred eeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCE
Q psy988 229 LIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKY 308 (408)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 308 (408)
.......++..++....++.-+.-|.|.+||+.++.++..-+-... .+...+......-
T Consensus 256 -------------------~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~--~iF~t~~~~~~~G 314 (494)
T 1bpo_A 256 -------------------AQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGE--TIFVTAPHEATAG 314 (494)
T ss_dssp -------------------STTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEEETTTTE
T ss_pred -------------------cccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCC--ceEEecccCCCCc
Confidence 2344566777888888888899999999999999998877664433 4444445555455
Q ss_pred EEEecCCceEEEeecccc
Q psy988 309 IVSGSENQCIYIWKTHHD 326 (408)
Q Consensus 309 l~~~~~dg~i~iw~~~~~ 326 (408)
++.....|.|.--.++..
T Consensus 315 i~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 315 IIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp EEEEETTCEEEEEEECTT
T ss_pred EEEEccCceEEEEEEccc
Confidence 555667888777777654
No 306
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.00 E-value=0.0038 Score=50.39 Aligned_cols=221 Identities=5% Similarity=0.073 Sum_probs=130.7
Q ss_pred CcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEe
Q psy988 45 GKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIE 124 (408)
Q Consensus 45 g~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 124 (408)
..|.|-|+..+.....+...+. +.-.+|..+.+|.-. ...+.++|+++.......... ..|.--.
T Consensus 49 ~~VvIiDl~n~~~~~Rrpi~Ad-----sAIMnP~~~ViALra-g~~LQiFnletK~klks~~~~---------e~VvfWk 113 (365)
T 2xzh_A 49 AQVVIIDMNDPSNPIRRPISAD-----SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT---------DDVTFWK 113 (365)
T ss_dssp EEEEEEETTSTTSCEEEECCCS-----EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS---------SCEEEEE
T ss_pred CEEEEEECCCCCCccccccccc-----eeeeCCCccEEEEec-CCeEEEechHHhhhhcceecC---------CccEEEE
Confidence 4788889888665432333322 233588888777665 789999999998766555432 2677777
Q ss_pred eCCCCCeEEEeeCCCeEEEEEccC-cccceeecCccc--cccceEEEEecCCCEEEEeec-------CceEEEeeeccce
Q psy988 125 PMPGEDKILVTSNDSRIRLYDLRD-LNLSCKYKGYVN--VSSQIKASFSHDGKYIVSGSE-------NQCIYIWKTHHDY 194 (408)
Q Consensus 125 ~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~-------dg~i~i~d~~~~~ 194 (408)
|-.+ +.|+..+. ..|+.|++.. ..+.+.+..|.. ...+.....+++.++++..+- .|.+.+|..+...
T Consensus 114 Wis~-~~L~lVT~-taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~ 191 (365)
T 2xzh_A 114 WISL-NTVALVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV 191 (365)
T ss_dssp ECSS-SEEEEEES-SEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE
T ss_pred ecCC-CeEEEEcC-CcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccc
Confidence 7643 45555444 5799999975 345555554433 344566677888898765432 3678888775432
Q ss_pred eeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEe---cCC
Q psy988 195 AKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVT---SND 271 (408)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~---~~d 271 (408)
.+.+.+|......+.+..+.. + ...++.+ ...
T Consensus 192 -------------sQ~ieGhaa~F~~~~~~g~~~-----------------------~---------~~lf~fa~r~~~g 226 (365)
T 2xzh_A 192 -------------SQPIEGHAASFAQFKMEGNAE-----------------------E---------STLFCFAVRGQAG 226 (365)
T ss_dssp -------------EEEECCSEEEEEEECCTTCSS-----------------------C---------EEEEEEEEEETTE
T ss_pred -------------cceeeeeeeeeEEEecCCCCC-----------------------C---------ceEEEEEEecCCC
Confidence 233455554443332221100 0 0011111 123
Q ss_pred CeEEEEEcCCC---eee-----eE--EeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccC
Q psy988 272 SRIRLYDLRDL---NLS-----CK--YKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDY 327 (408)
Q Consensus 272 ~~i~i~d~~~~---~~~-----~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 327 (408)
++++|-++... ... .. ++.........++..|+.-..+..-+.-|.|++||++++.
T Consensus 227 ~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt 292 (365)
T 2xzh_A 227 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGT 292 (365)
T ss_dssp EEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCC
T ss_pred cEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCc
Confidence 57888877432 111 11 1111112345578888888888888999999999999983
No 307
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.96 E-value=0.0059 Score=51.23 Aligned_cols=106 Identities=14% Similarity=0.147 Sum_probs=59.1
Q ss_pred CeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccc--eeec-CccccccceEEEEecC---CCEEEEeecC------ceEE
Q psy988 119 KISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLS--CKYK-GYVNVSSQIKASFSHD---GKYIVSGSEN------QCIY 186 (408)
Q Consensus 119 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~-~~~~~~~~~~~~~~~~---~~~l~~~~~d------g~i~ 186 (408)
....++|.|+++ ++++...|.|++++ +++.. ..+. ..........++++|+ +..|+++... +.|.
T Consensus 32 ~P~~ia~~pdG~-l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 32 VPWALAFLPDGG-MLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp CEEEEEECTTSC-EEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred CceEEEEcCCCe-EEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence 567899999997 55556679999998 33321 1111 1112234678999998 5566555432 5677
Q ss_pred EeeeccceeeeeecccCCCccccccc---cccceEEEEEEeCCcceeeee
Q psy988 187 IWKTHHDYAKFSSVRRDRNDFWEGIK---AHNAVVTCAVFAPCPELIIAQ 233 (408)
Q Consensus 187 i~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~ 233 (408)
.|+...+..... ...+..+. ........++|.|+|...++.
T Consensus 109 r~~~~~~~~~~~------~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~ 152 (352)
T 2ism_A 109 RLRHLGERGVLD------RVVLDGIPARPHGLHSGGRIAFGPDGMLYVTT 152 (352)
T ss_dssp EEEECSSCEEEE------EEEEEEECCCTTCCCCCCCEEECTTSCEEEEC
T ss_pred EEEeCCCCcCce------EEEEEeCCCCCCCCcCCceEEECCCCCEEEEE
Confidence 787764211000 00111111 111123578999999666554
No 308
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.96 E-value=0.0039 Score=51.10 Aligned_cols=148 Identities=9% Similarity=0.089 Sum_probs=74.9
Q ss_pred CCCEEEEEeCC----CcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecC-----CEEEEEeccCCeeeEE
Q psy988 34 DDRYFLSGSLD----GKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYD-----GRCIFYTTDQLKYHTQ 104 (408)
Q Consensus 34 ~~~~l~t~~~d----g~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iw~~~~~~~~~~ 104 (408)
++.+++.|+.+ ..+..||+.+.+......+......-..+. -++..++.|+.+ ..+.+||..+.+....
T Consensus 15 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~ 92 (302)
T 2xn4_A 15 PKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVY--MAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSV 92 (302)
T ss_dssp CEEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEESCBCSSSBCCCEEEEETTTTEEEEE
T ss_pred CCEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEE--ECCEEEEEeCcCCCccccceEEECCCCCceeeC
Confidence 34566666653 468889988776543322222111112222 267777777754 3588899887764332
Q ss_pred EEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCC-----eEEEEEccCcccceeecCccccccceEEEEecCCCEEEEe
Q psy988 105 IHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDS-----RIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSG 179 (408)
Q Consensus 105 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 179 (408)
. ...... .....+.+ ++..++.|+.++ .+.+||+.+.+-...-....... -.++ ...+++.++.|
T Consensus 93 ~---~~p~~r---~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~-~~~~-~~~~~~iyv~G 162 (302)
T 2xn4_A 93 A---NMRDRR---STLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRS-SVGV-GVVGGLLYAVG 162 (302)
T ss_dssp C---CCSSCC---BSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCB-SCEE-EEETTEEEEEC
T ss_pred C---CCCccc---cceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCccc-CceE-EEECCEEEEEe
Confidence 2 111111 11122222 466667776543 57788887765433211111111 1112 22366666776
Q ss_pred ecC-------ceEEEeeeccc
Q psy988 180 SEN-------QCIYIWKTHHD 193 (408)
Q Consensus 180 ~~d-------g~i~i~d~~~~ 193 (408)
+.+ ..+.+||+.+.
T Consensus 163 G~~~~~~~~~~~~~~yd~~~~ 183 (302)
T 2xn4_A 163 GYDVASRQCLSTVECYNATTN 183 (302)
T ss_dssp CEETTTTEECCCEEEEETTTT
T ss_pred CCCCCCCccccEEEEEeCCCC
Confidence 643 24677777553
No 309
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.92 E-value=0.0071 Score=50.77 Aligned_cols=58 Identities=7% Similarity=-0.017 Sum_probs=36.7
Q ss_pred CCCeEEEecCCCeEEEEEcCCCeeeeEEeec-cceeceeEEEEcCCCCEEEEec-CCceE
Q psy988 261 GEDKILVTSNDSRIRLYDLRDLNLSCKYKGY-VNVSSQIKASFSHDGKYIVSGS-ENQCI 318 (408)
Q Consensus 261 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~-~dg~i 318 (408)
++.++++....+.|...++..++........ .....+..+++.|||.+.++.. .+|.|
T Consensus 288 ~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g~I 347 (353)
T 2g8s_A 288 QQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSGEL 347 (353)
T ss_dssp TTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTEEE
T ss_pred CCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCCEE
Confidence 4667777777788888888766543332211 1123678899999998766533 34543
No 310
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.89 E-value=0.013 Score=53.17 Aligned_cols=341 Identities=8% Similarity=-0.047 Sum_probs=167.9
Q ss_pred ceEEEEeccCCeeEeEE-EeCCceEEEEEcCCCCCEEEEEe-CCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCC
Q psy988 3 KTVRLWHISRKECLCCF-QHIDFVTAICFHPRDDRYFLSGS-LDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGK 80 (408)
Q Consensus 3 g~i~vwd~~~~~~~~~~-~h~~~v~~~~~sp~~~~~l~t~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 80 (408)
+.|.+.+++........ ..-.....|++.|.++.+++|-. ..+.|...+++...... .....-.....+++.+++.
T Consensus 106 ~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~--l~~~~~~~P~Glald~~~~ 183 (619)
T 3s94_A 106 NRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFI--IINSEIYWPNGLTLDYEEQ 183 (619)
T ss_dssp TEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE--EECSSCSSEEEEEEETTTT
T ss_pred CEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEE--EEeCCCCCCcEEEEEccCC
Confidence 45666676654433333 24455778999994454444432 24667777776554432 2222344578999998766
Q ss_pred EEEEEe-cCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEe-eCCCeEEEEEccCcccceeecCc
Q psy988 81 FAVVGS-YDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVT-SNDSRIRLYDLRDLNLSCKYKGY 158 (408)
Q Consensus 81 ~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~ 158 (408)
.|+.+. ..+.|...+++......... .. .....++++..+ .++.+ ...+.|...|..+++....+...
T Consensus 184 ~LY~aD~~~~~I~~~~~dG~~~~~~~~-----~~---~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~~~~~i~~~ 253 (619)
T 3s94_A 184 KLYWADAKLNFIHKSNLDGTNRQAVVK-----GS---LPHPFALTLFED--ILYWTDWSTHSILACNKYTGEGLREIHSD 253 (619)
T ss_dssp EEEEEETTTCCEEEESSSCCEEC-----------------CCCEEESSS--EEEEECTTTCSEEEEESSSCCCCEECCSC
T ss_pred EEEEEeCCCCeEEEecCCCCccEEEEe-----CC---CCCceEEEEeCC--EEEEecCCCCEEEEEECCCCcccEEEecC
Confidence 666654 45688888887644322111 00 112345666544 55555 44678888888776543322111
Q ss_pred cc-----------------------cccceEEEE-ecC----------C---------------CEEEEeecCceEEEee
Q psy988 159 VN-----------------------VSSQIKASF-SHD----------G---------------KYIVSGSENQCIYIWK 189 (408)
Q Consensus 159 ~~-----------------------~~~~~~~~~-~~~----------~---------------~~l~~~~~dg~i~i~d 189 (408)
.. ......+++ +|. | .+|+.+ ..+.|+..+
T Consensus 254 ~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~-~~~~i~~i~ 332 (619)
T 3s94_A 254 IFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLA-RRTDLRRIS 332 (619)
T ss_dssp CCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEE-ESSCEEEEE
T ss_pred CCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEE-cccceEEEe
Confidence 00 000111111 111 1 011111 122333333
Q ss_pred eccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCC--------CCCceeeecCCCceeeeeccCCC
Q psy988 190 THHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDK--------SESTGYVLNATGRKISGIEPMPG 261 (408)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~i~~~~~~~~ 261 (408)
+..... ......+ ..-.....+++.+.+..+...-.... ......+....-..+..+++.+.
T Consensus 333 l~~~~~---------~~~~~~~-~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~ 402 (619)
T 3s94_A 333 LDTPDF---------TDIVLQL-EDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWV 402 (619)
T ss_dssp SSSTTC---------CCEECCC-SCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETT
T ss_pred cCCCcc---------ceeEEec-cccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecc
Confidence 322110 0000001 11234667888886555544321111 11112223333356778888875
Q ss_pred CCeEEE-ecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEec--CCceEEEeeccccCccccccccCcc
Q psy988 262 EDKILV-TSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS--ENQCIYIWKTHHDYAKFSSVRRDRN 338 (408)
Q Consensus 262 ~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~ 338 (408)
++.|+. -+..+.|.+.++.... ...+.. ........+++.|...+|+... ....|...++....
T Consensus 403 ~~~lY~tD~~~~~I~v~~~~G~~-~~~l~~-~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~----------- 469 (619)
T 3s94_A 403 ARNLYWTDTGTDRIEVTRLNGTM-RKILIS-EDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSD----------- 469 (619)
T ss_dssp TTEEEEEETTTTEEEEEETTSCS-CEEEEC-TTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-----------
T ss_pred cCcEEEEeCCCCcEEEEeCCCCe-EEEEEE-CCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCc-----------
Confidence 554444 4667899999987543 333322 1233567899999755555443 23566666665421
Q ss_pred ccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEE-EEecCCeEEEEeCCCC
Q psy988 339 DFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLV-SADFNGVIRVFLNKTK 396 (408)
Q Consensus 339 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-s~~~dg~v~iw~~~~~ 396 (408)
........-...+.+++++ +++.|. +-+..+.|...++...
T Consensus 470 -~~~l~~~~l~~P~GlalD~----------------~~~~LY~aD~~~~~I~~~~~dG~ 511 (619)
T 3s94_A 470 -RVVLVNTSLGWPNGLALDY----------------DEGKIYWGDAKTDKIEVMNTDGT 511 (619)
T ss_dssp -CEEEECSSCSCEEEEEEET----------------TTTEEEEEETTTTEEEEEESSSC
T ss_pred -cEEEEeCCCCCCeeeEEcc----------------cCCEEEEEECCCCEEEEEecCCC
Confidence 1111111234567889987 333443 3344566777776543
No 311
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.85 E-value=0.008 Score=49.32 Aligned_cols=147 Identities=10% Similarity=0.028 Sum_probs=77.6
Q ss_pred CCEEEEEeC--CCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecC----CEEEEEeccCCeeeEEEEEe
Q psy988 35 DRYFLSGSL--DGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYD----GRCIFYTTDQLKYHTQIHVR 108 (408)
Q Consensus 35 ~~~l~t~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iw~~~~~~~~~~~~~~ 108 (408)
+.+++.|+. ...+.+||..+++......+.........+. -++..++.|+.+ ..+.+||..+.+......
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~-- 87 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLG-- 87 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEEC--
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCC--
Confidence 445666665 3578999998876553333322222222222 366777777754 678899998876543322
Q ss_pred eccccccCCCCeEEEeeCCCCCeEEEeeCC------CeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecC
Q psy988 109 STRGKNATGRKISGIEPMPGEDKILVTSND------SRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSEN 182 (408)
Q Consensus 109 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 182 (408)
..... .....+.+ ++..++.|+.+ ..+.+||+.+.+-...-........ .++ ...+++.++.|+.+
T Consensus 88 -~p~~r---~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~-~~~~~~iyv~GG~~ 159 (306)
T 3ii7_A 88 -PPTPR---DSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCS-HGM-VEANGLIYVCGGSL 159 (306)
T ss_dssp -CSSCC---BSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBS-CEE-EEETTEEEEECCEE
T ss_pred -CCccc---cceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcce-eEE-EEECCEEEEECCCC
Confidence 11111 11122222 56666777654 4688999987654332111111111 112 22366666666542
Q ss_pred ---------ceEEEeeeccc
Q psy988 183 ---------QCIYIWKTHHD 193 (408)
Q Consensus 183 ---------g~i~i~d~~~~ 193 (408)
..+.+||+.+.
T Consensus 160 ~~~~~~~~~~~~~~yd~~~~ 179 (306)
T 3ii7_A 160 GNNVSGRVLNSCEVYDPATE 179 (306)
T ss_dssp SCTTTCEECCCEEEEETTTT
T ss_pred CCCCcccccceEEEeCCCCC
Confidence 34677777654
No 312
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.85 E-value=0.0077 Score=49.41 Aligned_cols=177 Identities=12% Similarity=0.056 Sum_probs=92.0
Q ss_pred ceEEEEeccCCeeEeEEE--eCCceEEEEEcCCCCCEEEEEeCC----CcEEEEecCCCCceeeeeecCCceeeEEEEEe
Q psy988 3 KTVRLWHISRKECLCCFQ--HIDFVTAICFHPRDDRYFLSGSLD----GKLRLWNIPDKKVAVWNEVEGQTKLITAANFC 76 (408)
Q Consensus 3 g~i~vwd~~~~~~~~~~~--h~~~v~~~~~sp~~~~~l~t~~~d----g~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~ 76 (408)
..+.+||..+.+-...-. ....-.++.. - ++.+++.|+.+ ..+.+||..+.+......+.........+.
T Consensus 24 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-- 99 (306)
T 3ii7_A 24 QSCRYFNPKDYSWTDIRCPFEKRRDAACVF-W-DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACA-- 99 (306)
T ss_dssp TSEEEEETTTTEEEECCCCSCCCBSCEEEE-E-TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEE--
T ss_pred ceEEEecCCCCCEecCCCCCcccceeEEEE-E-CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEE--
Confidence 357788888766443321 1111112222 2 66778888765 678899998876554333332222222222
Q ss_pred cCCCEEEEEecC------CEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeC---------CCeE
Q psy988 77 ENGKFAVVGSYD------GRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSN---------DSRI 141 (408)
Q Consensus 77 ~~~~~l~~~~~d------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------dg~i 141 (408)
-+++.++.|+.+ ..+.+||..+.+..... ...... .....+.+ ++..++.|+. -..+
T Consensus 100 ~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~---~~p~~r---~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~ 171 (306)
T 3ii7_A 100 AEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKP---SMLTQR---CSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSC 171 (306)
T ss_dssp ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEEC---CCSSCC---BSCEEEEE--TTEEEEECCEESCTTTCEECCCE
T ss_pred ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCC---CCcCCc---ceeEEEEE--CCEEEEECCCCCCCCcccccceE
Confidence 267777777765 46889998887653321 111111 11122222 4556666643 3458
Q ss_pred EEEEccCcccceeecCccccccceEEEEecCCCEEEEeecC-----ceEEEeeeccc
Q psy988 142 RLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSEN-----QCIYIWKTHHD 193 (408)
Q Consensus 142 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~ 193 (408)
.+||+.+.+-...-....... -.++ ..-+++.++.|+.+ ..+.+||+.+.
T Consensus 172 ~~yd~~~~~W~~~~~~p~~r~-~~~~-~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~ 226 (306)
T 3ii7_A 172 EVYDPATETWTELCPMIEARK-NHGL-VFVKDKIFAVGGQNGLGGLDNVEYYDIKLN 226 (306)
T ss_dssp EEEETTTTEEEEECCCSSCCB-SCEE-EEETTEEEEECCEETTEEBCCEEEEETTTT
T ss_pred EEeCCCCCeEEECCCccchhh-cceE-EEECCEEEEEeCCCCCCCCceEEEeeCCCC
Confidence 899998765332211111111 1122 22266777777654 35777777653
No 313
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.80 E-value=0.0098 Score=48.65 Aligned_cols=176 Identities=11% Similarity=0.068 Sum_probs=92.7
Q ss_pred eEEEEeccCCeeEeEEE--eCCceEEEEEcCCCCCEEEEEeCC-----CcEEEEecCCCC---ceeeeeecCCceeeEEE
Q psy988 4 TVRLWHISRKECLCCFQ--HIDFVTAICFHPRDDRYFLSGSLD-----GKLRLWNIPDKK---VAVWNEVEGQTKLITAA 73 (408)
Q Consensus 4 ~i~vwd~~~~~~~~~~~--h~~~v~~~~~sp~~~~~l~t~~~d-----g~i~iw~~~~~~---~~~~~~~~~~~~~v~~~ 73 (408)
.+.+||+.+.+-...-. ....-.+++. . ++.+++.|+.+ ..+.+||..+.+ ......+.........+
T Consensus 32 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~ 109 (301)
T 2vpj_A 32 VVEKYDPKTQEWSFLPSITRKRRYVASVS-L-HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGAT 109 (301)
T ss_dssp CEEEEETTTTEEEECCCCSSCCBSCEEEE-E-TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEE
T ss_pred EEEEEcCCCCeEEeCCCCChhhccccEEE-E-CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEE
Confidence 57778887765433222 1111122222 2 67778888765 468999998877 54333332222222222
Q ss_pred EEecCCCEEEEEecC-----CEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCC-----CeEEE
Q psy988 74 NFCENGKFAVVGSYD-----GRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSND-----SRIRL 143 (408)
Q Consensus 74 ~~~~~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i 143 (408)
.+ +++.++.|+.+ ..+.+||..+.+........ ... .....+.+ ++..++.|+.+ ..+.+
T Consensus 110 ~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p---~~r---~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~ 179 (301)
T 2vpj_A 110 TL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQ---TAR---EGAGLVVA--SGVIYCLGGYDGLNILNSVEK 179 (301)
T ss_dssp EE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECS---SCC---BSCEEEEE--TTEEEEECCBCSSCBCCCEEE
T ss_pred EE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCC---CCc---ccceEEEE--CCEEEEECCCCCCcccceEEE
Confidence 22 67777777654 46889998887654432211 111 11122222 56666776643 46889
Q ss_pred EEccCcccceeecCccccccceEEEEecCCCEEEEeecC-----ceEEEeeeccc
Q psy988 144 YDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSEN-----QCIYIWKTHHD 193 (408)
Q Consensus 144 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~ 193 (408)
||+.+.+-...-........ ..+...+++.++.|+.+ ..+.+||+.+.
T Consensus 180 ~d~~~~~W~~~~~~p~~r~~--~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 232 (301)
T 2vpj_A 180 YDPHTGHWTNVTPMATKRSG--AGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTD 232 (301)
T ss_dssp EETTTTEEEEECCCSSCCBS--CEEEEETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred EeCCCCcEEeCCCCCccccc--ceEEEECCEEEEEeCCCCCcccceEEEEeCCCC
Confidence 99887654332111111111 11222366777777664 35778887654
No 314
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.74 E-value=0.014 Score=48.64 Aligned_cols=213 Identities=12% Similarity=0.160 Sum_probs=106.2
Q ss_pred eeEEEEEecCCCEEEEE------------ecCCEEEEEeccCCee-eEEEEEeeccccccCCCCeEEEeeCC--CCC-eE
Q psy988 69 LITAANFCENGKFAVVG------------SYDGRCIFYTTDQLKY-HTQIHVRSTRGKNATGRKISGIEPMP--GED-KI 132 (408)
Q Consensus 69 ~v~~~~~~~~~~~l~~~------------~~dg~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~-~l 132 (408)
....+...|+|..++++ ..+|.|.++|.++... ...+..... ......-....+.+.+ ++. +|
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~-~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGN-TLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECS-SCCGGGCCEEEEEEEECTTCCEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCC-CCCcCceeeeeeEEEECCCCcEEE
Confidence 34556677877655554 2689999999874322 122222110 0111123566677655 343 45
Q ss_pred EEee---CCCeEEEEEccCccc----ceeecCccccccceEEEEecCCCEEEEeec---CceEEEeeeccceeeeeeccc
Q psy988 133 LVTS---NDSRIRLYDLRDLNL----SCKYKGYVNVSSQIKASFSHDGKYIVSGSE---NQCIYIWKTHHDYAKFSSVRR 202 (408)
Q Consensus 133 ~~~~---~dg~i~i~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~ 202 (408)
+++. .+..|.+|++..... +..+.+ ........+.+.++|.+.++... |.....++..
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g-~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~----------- 197 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH-KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMH----------- 197 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECC-TTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHH-----------
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEecccc-CCCCCCceEEEeCCCCEEecCCcEeCCcccccchhh-----------
Confidence 5552 256788888765322 222332 23344677888888876665431 1000000000
Q ss_pred CCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEe-cCCCeEEEEEcCC
Q psy988 203 DRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVT-SNDSRIRLYDLRD 281 (408)
Q Consensus 203 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~i~d~~~ 281 (408)
.......+. .+.|.. .......-...+.++|+||++.++++ +..+.|..|++..
T Consensus 198 --------~~~~~g~vy--r~d~~~---------------~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 198 --------LGLAWSFVT--YYSPND---------------VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp --------TTCCCEEEE--EECTTC---------------CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred --------ccCCccEEE--EEECCe---------------EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence 000001111 111210 00111122345778888888877766 5678999999863
Q ss_pred -Cee--eeEEeeccceeceeEEEEcC-CCCEEEEecCC-ceEEEee
Q psy988 282 -LNL--SCKYKGYVNVSSQIKASFSH-DGKYIVSGSEN-QCIYIWK 322 (408)
Q Consensus 282 -~~~--~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d-g~i~iw~ 322 (408)
++. ...+.. ....-.+++.+ +|++.+++..+ +.|..|+
T Consensus 253 ~g~l~~~~~~~~---~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~ 295 (355)
T 3sre_A 253 NWTLTPLRVLSF---DTLVDNISVDPVTGDLWVGCHPNGMRIFFYD 295 (355)
T ss_dssp TSCEEEEEEEEC---SSEEEEEEECTTTCCEEEEEESCHHHHHSCC
T ss_pred CCcEecCEEEeC---CCCCceEEEeCCCCcEEEEecCCceEEEEEC
Confidence 332 122311 22455789999 59988766544 3444444
No 315
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.73 E-value=0.016 Score=48.97 Aligned_cols=221 Identities=5% Similarity=0.066 Sum_probs=131.5
Q ss_pred CcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEe
Q psy988 45 GKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIE 124 (408)
Q Consensus 45 g~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 124 (408)
..|.|-|+..+.....+...+ -+.-.+|..+.+|.-. ..++.|+|+++.......... ..|.--.
T Consensus 48 ~~vvIiDl~~~~~~~rrpi~A-----dsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~---------e~VvfWk 112 (494)
T 1bpo_A 48 AQVVIIDMNDPSNPIRRPISA-----DSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT---------DDVTFWK 112 (494)
T ss_dssp CEEEEEETTSTTSCEEEECCC-----SEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECS---------SCCCEEE
T ss_pred CeEEEEECCCCCcceeccccc-----ceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecC---------CCceEEE
Confidence 468888888766543233332 2334678887776654 789999999998765554432 2565566
Q ss_pred eCCCCCeEEEeeCCCeEEEEEccCc-ccceeecCccc--cccceEEEEecCCCEEEEee-------cCceEEEeeeccce
Q psy988 125 PMPGEDKILVTSNDSRIRLYDLRDL-NLSCKYKGYVN--VSSQIKASFSHDGKYIVSGS-------ENQCIYIWKTHHDY 194 (408)
Q Consensus 125 ~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~-------~dg~i~i~d~~~~~ 194 (408)
|-. .+.|+..+. ..|+-|++... .+.+.+..|.. ...+.....+++.++++..+ -.|.+.+|..+..
T Consensus 113 Wis-~~~l~lVT~-taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~- 189 (494)
T 1bpo_A 113 WIS-LNTVALVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK- 189 (494)
T ss_dssp EEE-TTEEEEECS-SEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-
T ss_pred ecC-CCeEEEEcC-CeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-
Confidence 654 345555443 58999999743 45555554433 34466667788999876543 2467888887543
Q ss_pred eeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEec---CC
Q psy988 195 AKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTS---ND 271 (408)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~d 271 (408)
..+.+.+|......+.+..+.. +. ..++.+. ..
T Consensus 190 ------------~sQ~ieGhaa~F~~~~~~g~~~-----------------------~~---------~lf~fa~r~~~g 225 (494)
T 1bpo_A 190 ------------VSQPIEGHAASFAQFKMEGNAE-----------------------ES---------TLFCFAVRGQAG 225 (494)
T ss_dssp ------------CEEEECCSEEEEEEEECTTCSS-----------------------EE---------EEEEEEECSTTC
T ss_pred ------------ccchheeeeeeeEEEecCCCCC-----------------------Cc---------eEEEEEEecCCC
Confidence 2234566655554443332110 00 0112221 23
Q ss_pred CeEEEEEcCCC---eee---eE----EeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccC
Q psy988 272 SRIRLYDLRDL---NLS---CK----YKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDY 327 (408)
Q Consensus 272 ~~i~i~d~~~~---~~~---~~----~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 327 (408)
++++|.++... ... +. ++.........++..|+.-..+..-+.-|.|++||+.++.
T Consensus 226 ~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt 291 (494)
T 1bpo_A 226 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGT 291 (494)
T ss_dssp CEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCC
T ss_pred cEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccce
Confidence 67888887432 110 01 1111112345578888888888888999999999999984
No 316
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.69 E-value=0.029 Score=51.03 Aligned_cols=349 Identities=7% Similarity=-0.056 Sum_probs=171.2
Q ss_pred eEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEE-eCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEE
Q psy988 4 TVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSG-SLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFA 82 (408)
Q Consensus 4 ~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 82 (408)
.|...+++..........-.....|++++ +++.|..+ ...+.|...++....... +.........+++.. +..+
T Consensus 147 ~I~r~~~dG~~~~~l~~~~~~P~GlalD~-~~~~LY~aD~~~~~I~~~d~dG~~~~v---~~~~l~~P~glav~~-~~ly 221 (628)
T 4a0p_A 147 KIDRAAMDGSERTTLVPNVGRANGLTIDY-AKRRLYWTDLDTNLIESSNMLGLNREV---IADDLPHPFGLTQYQ-DYIY 221 (628)
T ss_dssp EEEEEETTSCSCEEEECSCSSEEEEEEET-TTTEEEEEETTTTEEEEEETTSCSCEE---EEECCSCEEEEEEET-TEEE
T ss_pred EEEEEeCCCCceEEEECCCCCcceEEEcc-ccCEEEEEECCCCEEEEEcCCCCceEE---eeccCCCceEEEEEC-CEEE
Confidence 34444554443333333445678999999 55555544 456789999987755432 222223345677754 4444
Q ss_pred EEEecCCEEEEEeccCCeeeEEEEE----------eecc---ccccC---CCCe--EEE----------e-----eCCCC
Q psy988 83 VVGSYDGRCIFYTTDQLKYHTQIHV----------RSTR---GKNAT---GRKI--SGI----------E-----PMPGE 129 (408)
Q Consensus 83 ~~~~~dg~i~iw~~~~~~~~~~~~~----------~~~~---~~~~~---~~~v--~~~----------~-----~~~~~ 129 (408)
++-...+.|...|..+++....+.. .... ..... .+.. .|+ + ..+++
T Consensus 222 ~tD~~~~~I~~~dk~tg~~~~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~ 301 (628)
T 4a0p_A 222 WTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADN 301 (628)
T ss_dssp EEETTTTEEEEEETTTCCSCEEEECSCCSCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTEEEEECSTTCEECTTS
T ss_pred EecCCCCEEEEEECCCCCceEEEecCCCCcceeeeeeecccccceEeccCCCCcchhhhcCCCCCeeEEcCCCcEecccC
Confidence 4444578888888665543322211 0000 00000 0001 111 0 01111
Q ss_pred -------CeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEee-cCceEEEeeeccceeeeeecc
Q psy988 130 -------DKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS-ENQCIYIWKTHHDYAKFSSVR 201 (408)
Q Consensus 130 -------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~ 201 (408)
.+|+.+. ...|+-..+.................+..++|.+.++.|+.+. ..+.|+.+++.......
T Consensus 302 ~~C~~~~~~Ll~s~-~~~i~~i~l~~~~~~~~~l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~---- 376 (628)
T 4a0p_A 302 RTCSAPTTFLLFSQ-KSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFT---- 376 (628)
T ss_dssp SCEECCSSEEEEEE-TTEEEEECCCTTCCCCEECCCTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE----
T ss_pred CcCccccceeeeec-cceEEEEecccccCceEEEEehhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceE----
Confidence 1222222 2344444433221110111111223466788988766666554 35677777664321100
Q ss_pred cCCCccccc-cc--cccceEEEEEEeCCcceeeeecCCCC-------CCCc-eeeecCCCceeeeeccCCCCCeEEEe-c
Q psy988 202 RDRNDFWEG-IK--AHNAVVTCAVFAPCPELIIAQMEPDK-------SEST-GYVLNATGRKISGIEPMPGEDKILVT-S 269 (408)
Q Consensus 202 ~~~~~~~~~-~~--~~~~~v~~~~~~~~~~~~~~~~~~~~-------~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~-~ 269 (408)
.+.. .. ........+++...++.|...-.... .... ..+....-..+.+|++.|...+|+.. .
T Consensus 377 -----v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~ 451 (628)
T 4a0p_A 377 -----VVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNL 451 (628)
T ss_dssp -----EEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCEEEEEEECTTCCEEEEEEETTTTEEEEEEE
T ss_pred -----EEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECCCCeEEEEEeCCCCceeeEEEecCCCeEEEeec
Confidence 0000 00 01235678888887666554321111 1111 12223344668899999955455443 2
Q ss_pred CCC--eEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEec-CCceEEEeeccccCccccccccCccccceeee-
Q psy988 270 NDS--RIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS-ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIK- 345 (408)
Q Consensus 270 ~d~--~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~- 345 (408)
... .|...++........... .......++++++++.|+.+. ..+.|...+++... ...+.
T Consensus 452 g~~~~~I~r~~~dG~~~~~l~~~--~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~-------------r~~~~~ 516 (628)
T 4a0p_A 452 QERSPKIERAALDGTEREVLFFS--GLSKPIALALDSRLGKLFWADSDLRRIESSDLSGAN-------------RIVLED 516 (628)
T ss_dssp ETTEEEEEEEETTSCSCEEEECS--SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-------------CEEEEC
T ss_pred CCCCCeEEEEeCCCCCcEEEEec--cCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCc-------------eEEEEc
Confidence 222 677777764333222222 223567899999877777654 45789999986531 11111
Q ss_pred eeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCCCc
Q psy988 346 AHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKPKH 399 (408)
Q Consensus 346 ~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~ 399 (408)
.......+++... +.++.+-...+.|...+..+++..
T Consensus 517 ~~~~~P~glav~~-----------------~~ly~tD~~~~~i~~~~k~~G~~~ 553 (628)
T 4a0p_A 517 SNILQPVGLTVFE-----------------NWLYWIDKQQQMIEKIDMTGREGR 553 (628)
T ss_dssp SSCSCEEEEEEET-----------------TEEEEEETTTTEEEEEETTSSSCC
T ss_pred CCCCCcEEEEEEC-----------------CEEEEEECCCCeEEEEECcCCCCc
Confidence 1222345666653 445555555667777776665543
No 317
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.66 E-value=0.0063 Score=51.23 Aligned_cols=165 Identities=15% Similarity=0.189 Sum_probs=92.5
Q ss_pred CCCCCeEEEeeCCCeEEEEEccCcccceeecCcc--ccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccC
Q psy988 126 MPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV--NVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRD 203 (408)
Q Consensus 126 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 203 (408)
..++..++++-. +.||.-++.....-+.+.... ....+..+..+|+|++|+..+. ..|.|..+..+.......
T Consensus 29 ~~n~t~i~~a~~-n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~--- 103 (452)
T 3pbp_A 29 SQNGTRIVFIQD-NIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDV--- 103 (452)
T ss_dssp ETTTTEEEEEET-TEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCH---
T ss_pred EcCCCEEEEEEC-CEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCccc---
Confidence 345666666543 788888887544333333331 2224667999999999998865 478888775321110000
Q ss_pred CCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCC---CCCeEEEecCCCeEEEEEcC
Q psy988 204 RNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMP---GEDKILVTSNDSRIRLYDLR 280 (408)
Q Consensus 204 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~d~~i~i~d~~ 280 (408)
.. ...-.+......+. ......+|..+.|+| .+..|++-..|+.|++||+.
T Consensus 104 ------~~-~~~~q~~ty~l~~~-------------------~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~ 157 (452)
T 3pbp_A 104 ------SI-QDAFQIFHYSIDEE-------------------EVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDIL 157 (452)
T ss_dssp ------HH-HHTTEEEEEEGGGC-------------------C--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETT
T ss_pred ------cc-ccccceeEEEcCCc-------------------ccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcc
Confidence 00 00001111111110 001234566666666 35678888999999999998
Q ss_pred CCee-eeEEee-------ccceeceeEEEEcCCCCEEEE--ecCCceEEEe
Q psy988 281 DLNL-SCKYKG-------YVNVSSQIKASFSHDGKYIVS--GSENQCIYIW 321 (408)
Q Consensus 281 ~~~~-~~~~~~-------~~~~~~v~~~~~s~~~~~l~~--~~~dg~i~iw 321 (408)
.... ...+.. ......+.+++|++++-.|.. .+..|.|+-.
T Consensus 158 ~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 158 NSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp CTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred cCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 5221 112221 111246789999998887777 4488888753
No 318
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.65 E-value=0.02 Score=48.05 Aligned_cols=109 Identities=8% Similarity=0.021 Sum_probs=58.3
Q ss_pred eeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeecc-ccccCCCCeEEEeeCCC---CCeEEEeeC-------
Q psy988 69 LITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTR-GKNATGRKISGIEPMPG---EDKILVTSN------- 137 (408)
Q Consensus 69 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~---~~~l~~~~~------- 137 (408)
....|+|.|+|++|+++...|.|++++.+. ..... ..... ...........++++|+ +..|+++..
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g-~~~~~--~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~ 95 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAGK-GLSAP--LSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK 95 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETTT-EECCC--CBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCCC-ceeeE--ecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence 467899999998445556789999998543 21100 01110 00112245789999996 566665532
Q ss_pred -CCeEEEEEccCcc----cce-eecCc----cccccceEEEEecCCCEEEEee
Q psy988 138 -DSRIRLYDLRDLN----LSC-KYKGY----VNVSSQIKASFSHDGKYIVSGS 180 (408)
Q Consensus 138 -dg~i~i~d~~~~~----~~~-~~~~~----~~~~~~~~~~~~~~~~~l~~~~ 180 (408)
...|..+++.... ... .+... ........+.|.|||.+.++.+
T Consensus 96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 148 (353)
T 2g8s_A 96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALG 148 (353)
T ss_dssp EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEEC
T ss_pred ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEEC
Confidence 2356666664321 111 11111 1111234689999996555543
No 319
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.63 E-value=0.018 Score=47.05 Aligned_cols=176 Identities=10% Similarity=0.111 Sum_probs=89.5
Q ss_pred eEEEEeccCCeeEeEEE--eCCceEEEEEcCCCCCEEEEEeCC-----CcEEEEecCCCCceeeeeecCCceeeEEEEEe
Q psy988 4 TVRLWHISRKECLCCFQ--HIDFVTAICFHPRDDRYFLSGSLD-----GKLRLWNIPDKKVAVWNEVEGQTKLITAANFC 76 (408)
Q Consensus 4 ~i~vwd~~~~~~~~~~~--h~~~v~~~~~sp~~~~~l~t~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~ 76 (408)
.+..||+.+.+-...-. ....-.+++.. ++.+++.|+.+ ..+.+||..+.+......+.........+.
T Consensus 31 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-- 106 (302)
T 2xn4_A 31 SVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV-- 106 (302)
T ss_dssp CEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--
T ss_pred cEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE--
Confidence 46677777665433211 11111122222 56777887754 358899988876554333332222222222
Q ss_pred cCCCEEEEEecCC-----EEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeC-------CCeEEEE
Q psy988 77 ENGKFAVVGSYDG-----RCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSN-------DSRIRLY 144 (408)
Q Consensus 77 ~~~~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------dg~i~i~ 144 (408)
-++..++.|+.++ .+.+||..+.+..... ..... ......+.+ ++..++.|+. ...+.+|
T Consensus 107 ~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~---~~p~~---r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~y 178 (302)
T 2xn4_A 107 LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVA---PMNTR---RSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECY 178 (302)
T ss_dssp ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEEC---CCSSC---CBSCEEEEE--TTEEEEECCEETTTTEECCCEEEE
T ss_pred ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecC---CCCCc---ccCceEEEE--CCEEEEEeCCCCCCCccccEEEEE
Confidence 2677777777653 5778888876643321 11111 111122222 4556666643 2458899
Q ss_pred EccCcccceeecCccccccceEEEEecCCCEEEEeecCc-----eEEEeeeccc
Q psy988 145 DLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQ-----CIYIWKTHHD 193 (408)
Q Consensus 145 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~ 193 (408)
|+.+.+-...-........ .++ ...+++.++.|+.++ .+.+||+.+.
T Consensus 179 d~~~~~W~~~~~~p~~r~~-~~~-~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 230 (302)
T 2xn4_A 179 NATTNEWTYIAEMSTRRSG-AGV-GVLNNLLYAVGGHDGPLVRKSVEVYDPTTN 230 (302)
T ss_dssp ETTTTEEEEECCCSSCCBS-CEE-EEETTEEEEECCBSSSSBCCCEEEEETTTT
T ss_pred eCCCCcEEECCCCcccccc-ccE-EEECCEEEEECCCCCCcccceEEEEeCCCC
Confidence 9887654332111111111 122 223677777777643 5777877653
No 320
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.60 E-value=0.021 Score=46.85 Aligned_cols=148 Identities=8% Similarity=0.012 Sum_probs=75.7
Q ss_pred CCCEEEEEeCC----CcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEec----C-----CEEEEEeccCCe
Q psy988 34 DDRYFLSGSLD----GKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSY----D-----GRCIFYTTDQLK 100 (408)
Q Consensus 34 ~~~~l~t~~~d----g~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d-----g~i~iw~~~~~~ 100 (408)
++.+++.|+.+ ..+.+||..+.+......+.........+. .++..++.|+. + ..+.+||..+.+
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~ 101 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCV--VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ 101 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEE--ECCEEEEECCCcCCCCCCeecceEEEECCCCCe
Confidence 56777777742 468899988876553322222111112222 26677777765 2 457888888765
Q ss_pred eeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCC-----CeEEEEEccCcccceeecCccccccceEEEEecCCCE
Q psy988 101 YHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSND-----SRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKY 175 (408)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (408)
..... ..... ......+.+ ++..++.|+.+ ..+.+||+.+.+-...-......... +++ .-+++.
T Consensus 102 W~~~~---~~p~~---r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~-~~~~~i 171 (308)
T 1zgk_A 102 WSPCA---PMSVP---RNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGV-GVA-VLNRLL 171 (308)
T ss_dssp EEECC---CCSSC---CBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSC-EEE-EETTEE
T ss_pred EeECC---CCCcC---ccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccce-EEE-EECCEE
Confidence 43221 11111 111222222 46666666532 46888998876533221111111111 122 226677
Q ss_pred EEEeecC-----ceEEEeeeccc
Q psy988 176 IVSGSEN-----QCIYIWKTHHD 193 (408)
Q Consensus 176 l~~~~~d-----g~i~i~d~~~~ 193 (408)
++.|+.+ ..+.+||+.+.
T Consensus 172 yv~GG~~~~~~~~~~~~yd~~~~ 194 (308)
T 1zgk_A 172 YAVGGFDGTNRLNSAECYYPERN 194 (308)
T ss_dssp EEECCBCSSCBCCCEEEEETTTT
T ss_pred EEEeCCCCCCcCceEEEEeCCCC
Confidence 7777654 34777776543
No 321
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.55 E-value=0.0062 Score=51.24 Aligned_cols=140 Identities=11% Similarity=0.047 Sum_probs=91.1
Q ss_pred CceEEEEeccCCeeEeEEEeC-----CceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCcee----------eeeecC-
Q psy988 2 DKTVRLWHISRKECLCCFQHI-----DFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAV----------WNEVEG- 65 (408)
Q Consensus 2 Dg~i~vwd~~~~~~~~~~~h~-----~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~----------~~~~~~- 65 (408)
++.||.-++.....-+.+... +.|..+..+| +|++||..+. ..|.|-.+..+.... .+.+.-
T Consensus 40 ~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~ 117 (452)
T 3pbp_A 40 DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSID 117 (452)
T ss_dssp TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGG
T ss_pred CCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEecC-CeEEEEEecCccccCcccccccccceeEEEcC
Confidence 456666677654444555533 2688899999 9999998865 689999887432110 011111
Q ss_pred -----CceeeEEEEEecC---CCEEEEEecCCEEEEEeccCCeeeEEEEEeec---cccccCCCCeEEEeeCCCCCeEEE
Q psy988 66 -----QTKLITAANFCEN---GKFAVVGSYDGRCIFYTTDQLKYHTQIHVRST---RGKNATGRKISGIEPMPGEDKILV 134 (408)
Q Consensus 66 -----~~~~v~~~~~~~~---~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~ 134 (408)
...+|..+.|+|- +..|++-..|+.|++||+........ .+... .+.......+.+++|.+++-.|++
T Consensus 118 ~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYv 196 (452)
T 3pbp_A 118 EEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYC 196 (452)
T ss_dssp GCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEE
T ss_pred CcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEE
Confidence 2467999999995 56899999999999999986322211 11111 111222357889999987777777
Q ss_pred ee--CCCeEEEE
Q psy988 135 TS--NDSRIRLY 144 (408)
Q Consensus 135 ~~--~dg~i~i~ 144 (408)
.+ +.|.|+-.
T Consensus 197 l~~t~~GDIYAl 208 (452)
T 3pbp_A 197 LNTTEGGDIFAF 208 (452)
T ss_dssp EECTTSCEEEEE
T ss_pred EecCCCCCEEEE
Confidence 54 67777654
No 322
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=97.46 E-value=0.047 Score=47.49 Aligned_cols=113 Identities=11% Similarity=0.068 Sum_probs=61.8
Q ss_pred eeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCC---CCeEEEeeC-------
Q psy988 68 KLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPG---EDKILVTSN------- 137 (408)
Q Consensus 68 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~------- 137 (408)
.....|+|.|+|+++++-...+.|++++..++.......+............+..++|+|+ +..|+++..
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 3467999999998666644335788887654443221111111100112356789999996 666666542
Q ss_pred ------CCeEEEEEccCcc-------cce-eecCccccccceEEEEecCCCEEEEeec
Q psy988 138 ------DSRIRLYDLRDLN-------LSC-KYKGYVNVSSQIKASFSHDGKYIVSGSE 181 (408)
Q Consensus 138 ------dg~i~i~d~~~~~-------~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 181 (408)
...|.-++..... .+. .+.. ........++|.|||.+.++.+.
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~-~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPS-SKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECC-CSSCCEEEEEECTTSCEEEEECC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCC-CCCCCCCeEeECCCCeEEEEECC
Confidence 1345556554321 111 1111 11123557899999987666543
No 323
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.43 E-value=0.038 Score=45.77 Aligned_cols=188 Identities=9% Similarity=-0.067 Sum_probs=92.4
Q ss_pred CCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecC--ccccccceEEEEecCCCEEEEeecCceEEEeeecccee
Q psy988 118 RKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKG--YVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYA 195 (408)
Q Consensus 118 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 195 (408)
..+.++.|.+.+..++ ++..|.|. .....++.-..... ......+..+.+.+ +. +++++..+.|+. ...+..
T Consensus 36 ~~~~~v~~~~~~~~~~-~G~~g~i~-~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~-~~~~g~~g~i~~--S~DgG~ 109 (327)
T 2xbg_A 36 ATILDMSFIDRHHGWL-VGVNATLM-ETRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NE-GWIVGEPPIMLH--TTDGGQ 109 (327)
T ss_dssp SCEEEEEESSSSCEEE-EETTTEEE-EESSTTSSCEECCCCCSCCCCEEEEEEEET-TE-EEEEEETTEEEE--ESSTTS
T ss_pred CcEEEEEECCCCcEEE-EcCCCeEE-EeCCCCCCCeECCCCCCCCCccEEEEEecC-Ce-EEEEECCCeEEE--ECCCCC
Confidence 3688898887666666 45567553 33333332111111 11123466778875 44 444456664443 222111
Q ss_pred eeeecccCCCccccccccccceEEEEEEeCCcceeeeecCC------CCCCCceeeecCCCceeeeeccCCCCCeEEEec
Q psy988 196 KFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEP------DKSESTGYVLNATGRKISGIEPMPGEDKILVTS 269 (408)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 269 (408)
....... .......+..+.+.+++..++..... +....-..........+..+.+.+++.+++++.
T Consensus 110 tW~~~~~--------~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~ 181 (327)
T 2xbg_A 110 SWSQIPL--------DPKLPGSPRLIKALGNGSAEMITNVGAIYRTKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSS 181 (327)
T ss_dssp SCEECCC--------CTTCSSCEEEEEEEETTEEEEEETTCCEEEESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEET
T ss_pred CceECcc--------ccCCCCCeEEEEEECCCCEEEEeCCccEEEEcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEEC
Confidence 1111100 00112235566666666555443211 111111222233445688899999998887775
Q ss_pred CCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEee
Q psy988 270 NDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWK 322 (408)
Q Consensus 270 ~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 322 (408)
..+..+-.|- .++.-..+.. .....+..+.++++++.++++ .+|.+++.+
T Consensus 182 ~G~~~~S~d~-gG~tW~~~~~-~~~~~~~~~~~~~~g~~~~~~-~~G~~~~s~ 231 (327)
T 2xbg_A 182 RGSFYSTWEP-GQTAWEPHNR-TTSRRLHNMGFTPDGRLWMIV-NGGKIAFSD 231 (327)
T ss_dssp TSSEEEEECT-TCSSCEEEEC-CSSSCEEEEEECTTSCEEEEE-TTTEEEEEE
T ss_pred CCcEEEEeCC-CCCceeECCC-CCCCccceeEECCCCCEEEEe-CCceEEEec
Confidence 5444444442 1222222221 122356788899998876554 577777764
No 324
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.32 E-value=0.048 Score=44.67 Aligned_cols=176 Identities=11% Similarity=0.024 Sum_probs=89.8
Q ss_pred eEEEEeccCCeeEeEEE--eCCceEEEEEcCCCCCEEEEEeC----C-----CcEEEEecCCCCceeeeeecCCceeeEE
Q psy988 4 TVRLWHISRKECLCCFQ--HIDFVTAICFHPRDDRYFLSGSL----D-----GKLRLWNIPDKKVAVWNEVEGQTKLITA 72 (408)
Q Consensus 4 ~i~vwd~~~~~~~~~~~--h~~~v~~~~~sp~~~~~l~t~~~----d-----g~i~iw~~~~~~~~~~~~~~~~~~~v~~ 72 (408)
.+.+||+.+.+-...-. ....-.+++.. ++.+++.|+. + ..+.+||..+.+......+.........
T Consensus 40 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~ 117 (308)
T 1zgk_A 40 YLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGV 117 (308)
T ss_dssp CEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEE
T ss_pred eEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEE
Confidence 56778887766443321 11111122222 5677777775 2 4688999888765433333222222222
Q ss_pred EEEecCCCEEEEEecC-----CEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCC-----CeEE
Q psy988 73 ANFCENGKFAVVGSYD-----GRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSND-----SRIR 142 (408)
Q Consensus 73 ~~~~~~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~ 142 (408)
+.+ +++.++.|+.+ ..+.+||..+.+...... .... ...-..+.+ ++..++.|+.+ ..+.
T Consensus 118 ~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~---~p~~---r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~ 187 (308)
T 1zgk_A 118 GVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAP---MLTR---RIGVGVAVL--NRLLYAVGGFDGTNRLNSAE 187 (308)
T ss_dssp EEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCC---CSSC---CBSCEEEEE--TTEEEEECCBCSSCBCCCEE
T ss_pred EEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCC---CCcc---ccceEEEEE--CCEEEEEeCCCCCCcCceEE
Confidence 222 66777776643 468888888765432211 1111 111122222 46666666543 4688
Q ss_pred EEEccCcccceeecCccccccceEEEEecCCCEEEEeecC-----ceEEEeeeccc
Q psy988 143 LYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSEN-----QCIYIWKTHHD 193 (408)
Q Consensus 143 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~ 193 (408)
+||+.+.+-...-....... -.+++ .-+++.++.|+.+ ..+.+||+.+.
T Consensus 188 ~yd~~~~~W~~~~~~p~~r~-~~~~~-~~~~~iyv~GG~~~~~~~~~v~~yd~~~~ 241 (308)
T 1zgk_A 188 CYYPERNEWRMITAMNTIRS-GAGVC-VLHNCIYAAGGYDGQDQLNSVERYDVETE 241 (308)
T ss_dssp EEETTTTEEEECCCCSSCCB-SCEEE-EETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred EEeCCCCeEeeCCCCCCccc-cceEE-EECCEEEEEeCCCCCCccceEEEEeCCCC
Confidence 99988765332211111111 11222 2267777777654 45788887654
No 325
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.30 E-value=0.052 Score=44.63 Aligned_cols=144 Identities=10% Similarity=0.055 Sum_probs=72.8
Q ss_pred EEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEec----C-------CEEEEEeccCCeeeEEE
Q psy988 37 YFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSY----D-------GRCIFYTTDQLKYHTQI 105 (408)
Q Consensus 37 ~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d-------g~i~iw~~~~~~~~~~~ 105 (408)
+++.|+ ..+.+||..+++... ..+..............++..++.|+. + ..+.+||..+.+....
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~- 82 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGM- 82 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEEC-
T ss_pred EEEEcC--CceEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEEC-
Confidence 445555 579999998887643 233222122222233457777777774 1 1377888887664321
Q ss_pred EEeeccccccCCCCeEEEeeCCCCCeEEEeeCC--------CeEEEEEccCcccceeecCccccccceEEEEecCCCEEE
Q psy988 106 HVRSTRGKNATGRKISGIEPMPGEDKILVTSND--------SRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIV 177 (408)
Q Consensus 106 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 177 (408)
....... .....+.+ ++..++.|+.+ ..+.+||+.+.+-...-....... - ..+...+++.++
T Consensus 83 --~~~p~~r---~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~-~-~~~~~~~~~iyv 153 (315)
T 4asc_A 83 --PPLPSPR---CLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVY-G-HTVLSHMDLVYV 153 (315)
T ss_dssp --CCBSSCE---ESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCB-S-CEEEEETTEEEE
T ss_pred --CCCCcch---hceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCccc-c-eeEEEECCEEEE
Confidence 1111111 01112222 45566666532 458899998765322211111111 1 122234666777
Q ss_pred Eeec-C-----ceEEEeeeccc
Q psy988 178 SGSE-N-----QCIYIWKTHHD 193 (408)
Q Consensus 178 ~~~~-d-----g~i~i~d~~~~ 193 (408)
.|+. + ..+.+||+.+.
T Consensus 154 ~GG~~~~~~~~~~~~~yd~~~~ 175 (315)
T 4asc_A 154 IGGKGSDRKCLNKMCVYDPKKF 175 (315)
T ss_dssp ECCBCTTSCBCCCEEEEETTTT
T ss_pred EeCCCCCCcccceEEEEeCCCC
Confidence 7765 2 35777777653
No 326
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.29 E-value=0.032 Score=54.66 Aligned_cols=272 Identities=11% Similarity=0.073 Sum_probs=141.6
Q ss_pred eEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEE
Q psy988 4 TVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAV 83 (408)
Q Consensus 4 ~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 83 (408)
+|.|-|+.++..+. ...-.--+.-.+| ..+.+|.=. ..++.|+|+++........+ ...|.-=.|-.+.. |+
T Consensus 49 ~vvIidl~~~~~~~--rrpi~AdsAIMnP-~~~iiALra-g~~lQiFnl~~k~klks~~~---~e~VvfWkWis~~~-l~ 120 (1630)
T 1xi4_A 49 QVVIIDMNDPSNPI--RRPISADSAIMNP-ASKVIALKA-GKTLQIFNIEMKSKMKAHTM---TDDVTFWKWISLNT-VA 120 (1630)
T ss_pred eEEEEECCCCCCcc--cccccchhhccCC-CcceEEEec-CCeEEEeehHHhhhhccccc---CCCceEEEecCCCe-eE
Confidence 35555555443321 1122223455788 777777654 68899999988765532222 23455555644433 33
Q ss_pred EEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEee-------CCCeEEEEEccCcccceeec
Q psy988 84 VGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTS-------NDSRIRLYDLRDLNLSCKYK 156 (408)
Q Consensus 84 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~ 156 (408)
..+ +..|..|++.+.........+. . .-....|..-..+++.++++..+ -.|.+.+|..+.+. .+.+.
T Consensus 121 lVT-~~aVyHW~~~~~s~P~k~fdR~-~--~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~ie 195 (1630)
T 1xi4_A 121 LVT-DNAVYHWSMEGESQPVKMFDRH-S--SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIE 195 (1630)
T ss_pred EEc-CCeEEEeccCCCCccHHHHhcc-h--hcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-chhhh
Confidence 332 5689999997532211110000 0 01134677778888888877543 35788999887543 33344
Q ss_pred CccccccceEEEEecCCCEEEE-eec---CceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeee
Q psy988 157 GYVNVSSQIKASFSHDGKYIVS-GSE---NQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIA 232 (408)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~l~~-~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 232 (408)
+|...-.-..+.-.+....+++ +.. .+.+++.++..... + -.........+.|.|+
T Consensus 196 gha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~---------~-----~~~f~kk~~~~~~~~~------ 255 (1630)
T 1xi4_A 196 GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPT---------G-----NQPFPKKAVDVFFPPE------ 255 (1630)
T ss_pred HhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCcc---------C-----CCCCccccccccCCcc------
Confidence 4432110000000111112222 211 25788877743200 0 0011112333444443
Q ss_pred ecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEe
Q psy988 233 QMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSG 312 (408)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 312 (408)
.....+.++..++....+..-+.-|.|.+||+.++.++..-+-... +|...+......-++..
T Consensus 256 ---------------~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~--~iF~~~~~~~~~g~~~v 318 (1630)
T 1xi4_A 256 ---------------AQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGE--TIFVTAPHEATAGIIGV 318 (1630)
T ss_pred ---------------cccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccccCC--ceEEeccCCCCCceEEE
Confidence 2233456677788888888889999999999999988765443323 33322333333334444
Q ss_pred cCCceEEEeeccc
Q psy988 313 SENQCIYIWKTHH 325 (408)
Q Consensus 313 ~~dg~i~iw~~~~ 325 (408)
...|.|.--.++.
T Consensus 319 nr~G~vl~v~v~~ 331 (1630)
T 1xi4_A 319 NRKGQVLSVCVEE 331 (1630)
T ss_pred cCCceEEEEEEcc
Confidence 4666666555554
No 327
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=97.24 E-value=0.0036 Score=47.43 Aligned_cols=150 Identities=13% Similarity=-0.023 Sum_probs=80.9
Q ss_pred CceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCcee--------eEEEEEecCCCEEEEEecCCEEEEE
Q psy988 23 DFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKL--------ITAANFCENGKFAVVGSYDGRCIFY 94 (408)
Q Consensus 23 ~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~--------v~~~~~~~~~~~l~~~~~dg~i~iw 94 (408)
..+..++|+| ++.+.+. .+|.+.-.+..+.... ...+-... ..++.|.|+|.+.++ .||.|.-+
T Consensus 41 ~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~---~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~ 112 (236)
T 1tl2_A 41 SNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDND---NWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKA 112 (236)
T ss_dssp TTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTC---CHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEE
T ss_pred ccceeEEECC-CccEEEE--eCCeEEEECCCCCCcc---cccccccEecccccccceEEEECCCCCEEEe--CCCEEEEe
Confidence 5788999999 9986666 6687666665443222 11111222 478899999987777 66988877
Q ss_pred eccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccc-----eeecCccccccceEEEE
Q psy988 95 TTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLS-----CKYKGYVNVSSQIKASF 169 (408)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-----~~~~~~~~~~~~~~~~~ 169 (408)
+-.+.....-+.... ......-..+..+.+.|+|...++. |+.++-....+.... ....+.........+.|
T Consensus 113 ~pP~~~~~~Wl~~a~-~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f 189 (236)
T 1tl2_A 113 SPPQSDTDNWIARAT-EVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFF 189 (236)
T ss_dssp SCCCSTTCCHHHHSE-EEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEE
T ss_pred CCCcCCCCceecccc-EeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEE
Confidence 753321110000000 0000111367899999999776666 777543333221110 11111111112334568
Q ss_pred ecCCCEEEEeecCceE
Q psy988 170 SHDGKYIVSGSENQCI 185 (408)
Q Consensus 170 ~~~~~~l~~~~~dg~i 185 (408)
.+++...++. +|.+
T Consensus 190 ~~~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 190 SSVGTLFGVQ--GGKF 203 (236)
T ss_dssp CTTSCEEEEE--TTEE
T ss_pred CCCCcEEEEe--CCeE
Confidence 8888766655 6633
No 328
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=97.22 E-value=0.056 Score=44.56 Aligned_cols=118 Identities=8% Similarity=0.100 Sum_probs=70.8
Q ss_pred CCEEEEEeCCCcEEEEecCCCCceeeeeecCC-ceeeEEEEE--ec-CCCEEEEE-ecCCEEEEEeccCCeeeEEEEEee
Q psy988 35 DRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQ-TKLITAANF--CE-NGKFAVVG-SYDGRCIFYTTDQLKYHTQIHVRS 109 (408)
Q Consensus 35 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~-~~~v~~~~~--~~-~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~ 109 (408)
+.+++.++.||.|.-.|.++|+.. -.+... ..++....- .+ ++..++.. +.||.+..++..++..........
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~--W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~ 87 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHII--WSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQ 87 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEE--EEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHH
T ss_pred CCEEEEEeCCCeEEEEECCCCcEE--EEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccc
Confidence 347888999999999999888765 233322 122222110 01 23333333 589999999988875543333222
Q ss_pred ccccccCCCCeEE---Eee-----CCCCCeEEEeeCCCeEEEEEccCcccceeecCc
Q psy988 110 TRGKNATGRKISG---IEP-----MPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGY 158 (408)
Q Consensus 110 ~~~~~~~~~~v~~---~~~-----~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 158 (408)
... ..++.. ... ...+..+++++.+|.+...|+++|+.+..+...
T Consensus 88 lv~----~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 88 LVS----TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp HHT----TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred cee----ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence 111 112221 000 013568899999999999999999998887643
No 329
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=97.16 E-value=0.068 Score=46.48 Aligned_cols=112 Identities=12% Similarity=0.112 Sum_probs=63.5
Q ss_pred CCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecC------CceeeEEEEEecC---CCEEEEEec-----
Q psy988 22 IDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEG------QTKLITAANFCEN---GKFAVVGSY----- 87 (408)
Q Consensus 22 ~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~------~~~~v~~~~~~~~---~~~l~~~~~----- 87 (408)
-...+.|+|.| +|+++++-...+.|++++..++.......+.. .......|+|+|+ +..|+.+..
T Consensus 26 l~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 26 LNKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp CSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCCceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence 45678999999 89866665433478888866555433222221 2456789999995 444544432
Q ss_pred --------CCEEEEEeccCC--eeeE-EEEEeeccccccCCCCeEEEeeCCCCCeEEEee
Q psy988 88 --------DGRCIFYTTDQL--KYHT-QIHVRSTRGKNATGRKISGIEPMPGEDKILVTS 136 (408)
Q Consensus 88 --------dg~i~iw~~~~~--~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 136 (408)
...|.-++.... .... ...+........| ....++|.|+|.+.++.+
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H--~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDH--QSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSC--CEEEEEECTTSCEEEEEC
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCC--CCCeEeECCCCeEEEEEC
Confidence 235666665432 1111 1111111111122 578899999998666644
No 330
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.12 E-value=0.1 Score=51.38 Aligned_cols=244 Identities=8% Similarity=0.036 Sum_probs=124.8
Q ss_pred CEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEE
Q psy988 89 GRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKAS 168 (408)
Q Consensus 89 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 168 (408)
..|.|.|+..+......+. .--+...+|..+.++.-. ...+.|+|+++...+..+.-.. .|.--.
T Consensus 48 ~~vvIidl~~~~~~~rrpi-----------~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e---~VvfWk 112 (1630)
T 1xi4_A 48 AQVVIIDMNDPSNPIRRPI-----------SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD---DVTFWK 112 (1630)
T ss_pred ceEEEEECCCCCCcccccc-----------cchhhccCCCcceEEEec-CCeEEEeehHHhhhhcccccCC---CceEEE
Confidence 4788888887654322211 122344577776665554 6799999999877666554433 355566
Q ss_pred EecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccc----cceEEEEEEeCCcceeeeecCCCCCCCcee
Q psy988 169 FSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAH----NAVVTCAVFAPCPELIIAQMEPDKSESTGY 244 (408)
Q Consensus 169 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (408)
|-.+.. |+..+ +..|+-|++.... .+.+.+..| ...|.....+++.++++..+
T Consensus 113 Wis~~~-l~lVT-~~aVyHW~~~~~s-----------~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~g---------- 169 (1630)
T 1xi4_A 113 WISLNT-VALVT-DNAVYHWSMEGES-----------QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTG---------- 169 (1630)
T ss_pred ecCCCe-eEEEc-CCeEEEeccCCCC-----------ccHHHHhcchhcccCeeEEeeeCCCCCeEEEEe----------
Confidence 654443 33332 3579999996421 122222222 34455555555555553211
Q ss_pred eecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCC-CCEEEEec---CCceEEE
Q psy988 245 VLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHD-GKYIVSGS---ENQCIYI 320 (408)
Q Consensus 245 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~---~dg~i~i 320 (408)
++++. +.-.|.+.+|..+. +..+.+.+|.....-..+.=.+. ...++.+. ..+.++|
T Consensus 170 -------------i~~~~-----~~v~G~mQLyS~er-~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi 230 (1630)
T 1xi4_A 170 -------------ISAQQ-----NRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHI 230 (1630)
T ss_pred -------------eccCC-----Ccccceeeeeeccc-ccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEE
Confidence 01111 13458899998774 34445566544221111111111 12222222 1368999
Q ss_pred eeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCCCcc
Q psy988 321 WKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKPKHS 400 (408)
Q Consensus 321 w~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~ 400 (408)
-++...........+........-..-.+--.++..++ .-..+..-+.-|.|.++|+.++....
T Consensus 231 ~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~----------------k~g~iy~itk~G~~~~~d~~t~~~i~ 294 (1630)
T 1xi4_A 231 IEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE----------------KHDVVFLITKYGYIHLYDLETGTCIY 294 (1630)
T ss_pred EecCCCccCCCCCccccccccCCcccccCcceEEEecc----------------ccCEEEEEecCceEEEEecccchhhh
Confidence 99865311100000000000000001122223556666 45567777788999999999998876
Q ss_pred ccccc
Q psy988 401 SLPVS 405 (408)
Q Consensus 401 ~~~~s 405 (408)
.-++|
T Consensus 295 ~~ris 299 (1630)
T 1xi4_A 295 MNRIS 299 (1630)
T ss_pred hcccc
Confidence 65554
No 331
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.10 E-value=0.098 Score=43.81 Aligned_cols=109 Identities=14% Similarity=0.079 Sum_probs=62.2
Q ss_pred CCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeec---CCceeeEEEEEecC---CCEEEEEec----C---
Q psy988 22 IDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVE---GQTKLITAANFCEN---GKFAVVGSY----D--- 88 (408)
Q Consensus 22 ~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~---~~~~~v~~~~~~~~---~~~l~~~~~----d--- 88 (408)
-.....|+|.| ++++++ +..+|.|++++. +++ .....+. ........++++|+ +..|+.+.. +
T Consensus 28 l~~P~~ia~~p-dG~l~V-~e~~g~I~~~d~-~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~ 103 (354)
T 3a9g_A 28 LEVPWSIAPLG-GGRYLV-TERPGRLVLISP-SGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHI 103 (354)
T ss_dssp CSCEEEEEEEE-TTEEEE-EETTTEEEEECS-SCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCE
T ss_pred CCCCeEEEEcC-CCeEEE-EeCCCEEEEEeC-CCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCc
Confidence 35678999999 887544 556799999973 443 2222221 12345789999997 445554433 3
Q ss_pred -CEEEEEeccCC--eeeEE-EEEeeccccccCCCCeEEEeeCCCCCeEEEee
Q psy988 89 -GRCIFYTTDQL--KYHTQ-IHVRSTRGKNATGRKISGIEPMPGEDKILVTS 136 (408)
Q Consensus 89 -g~i~iw~~~~~--~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 136 (408)
+.|..|+.... ..... ...........| ....++|.|++..+++.+
T Consensus 104 ~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h--~~~~l~~~pDG~Lyvt~G 153 (354)
T 3a9g_A 104 RNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIH--NGGRIRFGPDGMLYITTG 153 (354)
T ss_dssp EEEEEEEEECSSSCCEEEEEEEEEEEECCSSC--CCCCEEECTTSCEEEECC
T ss_pred ceEEEEEEECCCCcCcCccEEEEEcCCCCCCc--CCceEEECCCCcEEEEEC
Confidence 57777877654 11111 111111111112 346789999997666543
No 332
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=96.96 E-value=0.11 Score=42.24 Aligned_cols=95 Identities=12% Similarity=0.098 Sum_probs=50.9
Q ss_pred ecCCCEEEEEe--cCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCC--------------C
Q psy988 76 CENGKFAVVGS--YDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSND--------------S 139 (408)
Q Consensus 76 ~~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------------g 139 (408)
+++|..++... .++.|...+.+..... .+.. -.+--++++++.|+.+... .
T Consensus 22 ~~~g~~iy~~n~~d~~~ly~~~~dg~~~~-~l~~------------~~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~ 88 (302)
T 3s25_A 22 CESDGEVFFSNTNDNGRLYAMNIDGSNIH-KLSN------------DTAMYINADKNYVYYVRNNNQKITSQTFFSYDRN 88 (302)
T ss_dssp EEETTEEEEEEGGGTTEEEEEETTSCSCE-EEEE------------EEEEEEEECSSEEEEEEECC------CCSSCCSE
T ss_pred EEeCCEEEEEeCCCCceEEEEcCCCCCCE-EccC------------CceeeEEEcCCEEEEEECCCCcccccceeccCCC
Confidence 35666666554 2456666665544322 2211 1123446778888777542 4
Q ss_pred eEEEEEccCcccceeecCccccccceEEEEecCCCEEEEee--cCceEEEeee
Q psy988 140 RIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS--ENQCIYIWKT 190 (408)
Q Consensus 140 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~dg~i~i~d~ 190 (408)
.|+..++...+... +... ....+++++++|+-.. .++.-.||.+
T Consensus 89 ~Iy~i~~dg~~~~~-l~~~------~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~ 134 (302)
T 3s25_A 89 SLCRIKRNGHGSTV-LDPD------PCIYASLIGNYIYYLHYDTQTATSLYRI 134 (302)
T ss_dssp EEEEEETTSCCCEE-EECS------CEEEEEEETTEEEEEEESSSSCEEEEEE
T ss_pred eEEEEeCCCCcceE-eecC------CccEEEEeCCEEEEEeecCCCCceEEEE
Confidence 67777777665332 2211 1236788888888765 3444444443
No 333
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.93 E-value=0.11 Score=43.64 Aligned_cols=54 Identities=15% Similarity=0.156 Sum_probs=30.7
Q ss_pred CCCEEEEEeC-C---------CcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecC
Q psy988 34 DDRYFLSGSL-D---------GKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYD 88 (408)
Q Consensus 34 ~~~~l~t~~~-d---------g~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 88 (408)
++.+++.|+. + ..+.+||..+.+......+......-.++. ..+++.++.|+.+
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~ 128 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTF-VHNGKAYVTGGVN 128 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEE-EETTEEEEEECCC
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEE-EECCEEEEEeCcC
Confidence 5677777776 2 468899998876553333221111111122 2577777888754
No 334
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.89 E-value=0.14 Score=42.10 Aligned_cols=176 Identities=13% Similarity=0.146 Sum_probs=90.7
Q ss_pred eEEEEeccCCeeEeEEE--e-CCceEEEEEcCCCCCEEEEEeC----C-------CcEEEEecCCCCceeeeeecCCcee
Q psy988 4 TVRLWHISRKECLCCFQ--H-IDFVTAICFHPRDDRYFLSGSL----D-------GKLRLWNIPDKKVAVWNEVEGQTKL 69 (408)
Q Consensus 4 ~i~vwd~~~~~~~~~~~--h-~~~v~~~~~sp~~~~~l~t~~~----d-------g~i~iw~~~~~~~~~~~~~~~~~~~ 69 (408)
.+.+||+.+++-.. .. . ........... ++.+++.|+. + ..+.+||..+.+......+......
T Consensus 14 ~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~ 91 (315)
T 4asc_A 14 GAVAYDPAANECYC-ASLSSQVPKNHVSLVTK-ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCL 91 (315)
T ss_dssp EEEEEETTTTEEEE-EECCCCSCSSEEEEECT-TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEES
T ss_pred ceEEECCCCCeEec-CCCCCCCCccceEEEEE-CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhc
Confidence 57788988887543 22 1 12223333344 7788888874 1 1277888887765433333222222
Q ss_pred eEEEEEecCCCEEEEEecC--------CEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeC----
Q psy988 70 ITAANFCENGKFAVVGSYD--------GRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSN---- 137 (408)
Q Consensus 70 v~~~~~~~~~~~l~~~~~d--------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---- 137 (408)
...+.+ ++..++.|+.+ ..+.+||..+.+..... ...... .....+. .+++.++.|+.
T Consensus 92 ~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~---~~p~~r---~~~~~~~--~~~~iyv~GG~~~~~ 161 (315)
T 4asc_A 92 FGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESD---PLPYVV---YGHTVLS--HMDLVYVIGGKGSDR 161 (315)
T ss_dssp CEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECC---CCSSCC---BSCEEEE--ETTEEEEECCBCTTS
T ss_pred eeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECC---CCCCcc---cceeEEE--ECCEEEEEeCCCCCC
Confidence 222222 66667777642 46888998877543221 111111 1112222 24566667765
Q ss_pred --CCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecCc-----eEEEeeeccc
Q psy988 138 --DSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQ-----CIYIWKTHHD 193 (408)
Q Consensus 138 --dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~ 193 (408)
-..+.+||+.+.+-...-........ ..+..-+++.++.|+.++ .+.+||+.+.
T Consensus 162 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~--~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 222 (315)
T 4asc_A 162 KCLNKMCVYDPKKFEWKELAPMQTARSL--FGATVHDGRIIVAAGVTDTGLTSSAEVYSITDN 222 (315)
T ss_dssp CBCCCEEEEETTTTEEEECCCCSSCCBS--CEEEEETTEEEEEEEECSSSEEEEEEEEETTTT
T ss_pred cccceEEEEeCCCCeEEECCCCCCchhc--eEEEEECCEEEEEeccCCCCccceEEEEECCCC
Confidence 24689999987653322111111111 112233677777777644 4777777654
No 335
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=96.87 E-value=0.21 Score=43.86 Aligned_cols=289 Identities=10% Similarity=0.057 Sum_probs=140.4
Q ss_pred EEEEecCCEEEEEeccCCeeeEEEEEeeccccccC-----------------CCCe--EEEeeC---CCCCeEEEeeC-C
Q psy988 82 AVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNAT-----------------GRKI--SGIEPM---PGEDKILVTSN-D 138 (408)
Q Consensus 82 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~-----------------~~~v--~~~~~~---~~~~~l~~~~~-d 138 (408)
+.||+..|.++|+-+.+++....+.........+- .+.. ..+.+. .||++|+.-.. +
T Consensus 73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan 152 (638)
T 3sbq_A 73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN 152 (638)
T ss_dssp EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence 77889999999999999988777665443321110 0011 112222 25677777753 5
Q ss_pred CeEEEEEccCcccceeecCccccccceEEEEe--cCCCEEEEeecCc-------eEEEeeeccceeeeeecccCCCcc-c
Q psy988 139 SRIRLYDLRDLNLSCKYKGYVNVSSQIKASFS--HDGKYIVSGSENQ-------CIYIWKTHHDYAKFSSVRRDRNDF-W 208 (408)
Q Consensus 139 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~dg-------~i~i~d~~~~~~~~~~~~~~~~~~-~ 208 (408)
..|...+++..++.+.+... +...+..+.+- |+..|++++++.. ...-+|-......+..+.....+. +
T Consensus 153 ~RvAri~l~~~~~d~Ii~iP-n~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~~ 231 (638)
T 3sbq_A 153 SRVARIRLDIMKCDKMITVP-NVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMAF 231 (638)
T ss_dssp TEEEEEETTTTEEEEEEECT-TCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEEE
T ss_pred cceEEEECCcEeeceeEeCC-CCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEEE
Confidence 67888888877765554432 22335556665 6788888887532 110000000000011000000000 0
Q ss_pred cccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecC-CCceeeeecc------CCCCCeEEEecCCC-eEEEEEcC
Q psy988 209 EGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNA-TGRKISGIEP------MPGEDKILVTSNDS-RIRLYDLR 280 (408)
Q Consensus 209 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~------~~~~~~l~~~~~d~-~i~i~d~~ 280 (408)
+... ..........+++.+.++...+............ ....+..+.| -.+|++-.. +| .+.+.|.+
T Consensus 232 Qv~v--~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~---~g~gv~ViD~~ 306 (638)
T 3sbq_A 232 QVIV--DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITL---GDSKTPVLDGR 306 (638)
T ss_dssp EEEE--SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCC---TTCCCCEEECS
T ss_pred EEEc--CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEE---CCCCeeEEccc
Confidence 0000 0111122334455554444333222211111111 1111111111 112332211 21 36777776
Q ss_pred C----Ce-eeeEEeeccceeceeEEEEcCCCCEEEEec-CCceEEEeeccccCccccc-cccCccccceeeeeeccceEE
Q psy988 281 D----LN-LSCKYKGYVNVSSQIKASFSHDGKYIVSGS-ENQCIYIWKTHHDYAKFSS-VRRDRNDFWEGIKAHNAVVTC 353 (408)
Q Consensus 281 ~----~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~-~~~~~~~~~~~~~~h~~~v~~ 353 (408)
. +. ....++... ....+..+|||+++++++ .+.++.++|+..-...+.. +..+......... -.-.-..
T Consensus 307 ~~~~~~~~~~~~iP~pk---sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlH 382 (638)
T 3sbq_A 307 KKDGKDSKFTRYVPVPK---NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLH 382 (638)
T ss_dssp CBTTBCCSSEEEEEESS---SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEE
T ss_pred cccccCCceEEEEeCCC---CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccE
Confidence 5 22 222232222 334679999999988755 5789999998853221110 0011111122222 2334568
Q ss_pred EEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCC
Q psy988 354 AVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTK 396 (408)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 396 (408)
.+|.+ +|+...|---|..|.-|++...
T Consensus 383 t~Fd~----------------~G~aYTtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 383 TTFDG----------------RGNAYTTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp EEECS----------------SSEEEEEETTTTEEEEEEHHHH
T ss_pred EEECC----------------CCceEeeeeecceEEEEeccHH
Confidence 89999 8876677778999999998753
No 336
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.86 E-value=0.15 Score=42.22 Aligned_cols=116 Identities=11% Similarity=0.017 Sum_probs=64.5
Q ss_pred ecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCC---CCeEEEe---e
Q psy988 63 VEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPG---EDKILVT---S 136 (408)
Q Consensus 63 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~---~ 136 (408)
+...-.....|+|.|+|.++++--..|.|++++..+++........ ............++++|+ +..|++. .
T Consensus 27 va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~--~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~ 104 (347)
T 3das_A 27 VATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVP--GVSPSGEGGLLGIALSPDYASDHMVYAYFTSA 104 (347)
T ss_dssp EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECT--TCCCBTTBSEEEEEECTTHHHHCEEEEEEECS
T ss_pred eecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccC--ceeecCCCCceeeEeccccccCCEEEEEEecC
Confidence 3333445689999999987666544899999986654432111111 111122356899999995 4555553 2
Q ss_pred CCCeEEEEEccCcc--------cce---eecCccccccceEEEEecCCCEEEEeec
Q psy988 137 NDSRIRLYDLRDLN--------LSC---KYKGYVNVSSQIKASFSHDGKYIVSGSE 181 (408)
Q Consensus 137 ~dg~i~i~d~~~~~--------~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 181 (408)
.++.|.-|.+..+. ... .+.. ........+.|.|||.+.++.+.
T Consensus 105 ~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~-~~~H~g~~l~fgpDG~Lyvt~Gd 159 (347)
T 3das_A 105 SDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPK-GVIHNGGRIAFGPDKMLYAGTGE 159 (347)
T ss_dssp SSEEEEEEEBCTTSCTTCCBCCCEEEEEEECC-CSSCCCCCEEECTTSCEEEECBC
T ss_pred CCCEEEEEEeCCCCcccccCCCcEEEEEcCCC-CCCccCccccCCCCCCEEEEECC
Confidence 34556666665421 111 1111 11112335889999976666543
No 337
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.67 E-value=0.22 Score=41.30 Aligned_cols=113 Identities=11% Similarity=0.026 Sum_probs=66.0
Q ss_pred eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeee----cCCceeeEEEEEecC---CCEEEEE-e--cCCE
Q psy988 21 HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEV----EGQTKLITAANFCEN---GKFAVVG-S--YDGR 90 (408)
Q Consensus 21 h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~----~~~~~~v~~~~~~~~---~~~l~~~-~--~dg~ 90 (408)
.-...+.|+|.| ++.++++--..|.|++++..++.......+ .........|+|+|+ +..|+.. + .++.
T Consensus 30 gL~~P~~ia~~p-dG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~ 108 (347)
T 3das_A 30 GLNSPWGLAPLP-GGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNR 108 (347)
T ss_dssp CCSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEE
T ss_pred CCCCceEEEEcC-CCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCE
Confidence 456778999999 898776665489999998766654322222 123456789999985 3344432 2 3456
Q ss_pred EEEEeccCCe-----e-eEEEEEeeccccccCCCCeEEEeeCCCCCeEEEee
Q psy988 91 CIFYTTDQLK-----Y-HTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTS 136 (408)
Q Consensus 91 i~iw~~~~~~-----~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 136 (408)
|.-|...... . .....+........| .-..+.|.|++.+.++.+
T Consensus 109 v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H--~g~~l~fgpDG~Lyvt~G 158 (347)
T 3das_A 109 IVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIH--NGGRIAFGPDKMLYAGTG 158 (347)
T ss_dssp EEEEEBCTTSCTTCCBCCCEEEEEEECCCSSC--CCCCEEECTTSCEEEECB
T ss_pred EEEEEeCCCCcccccCCCcEEEEEcCCCCCCc--cCccccCCCCCCEEEEEC
Confidence 6666665421 1 011111111111222 346789999997666644
No 338
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.65 E-value=0.0046 Score=50.95 Aligned_cols=158 Identities=10% Similarity=0.092 Sum_probs=81.9
Q ss_pred CCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEE--e-cCCCEEEEe-ecCceEEEeeeccceeeeeecccCC
Q psy988 129 EDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASF--S-HDGKYIVSG-SENQCIYIWKTHHDYAKFSSVRRDR 204 (408)
Q Consensus 129 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~ 204 (408)
+..+++++.||.|.-+|..+|+..-.+... ....+....- . .++..++.. ..||.|+.++..++..+......
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~-~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~-- 86 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPE-NFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIR-- 86 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGG-GSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHH--
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCC-ccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccc--
Confidence 457889999999999999999988877654 1111211110 0 123333333 57999999998765333211000
Q ss_pred CccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCee
Q psy988 205 NDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNL 284 (408)
Q Consensus 205 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 284 (408)
.+. ...++.. . +.-++ ...--...+..+++|+.+|++...|+.+|+.
T Consensus 87 -----~lv-~~SP~~~-~----~~pvv----------------------~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~ 133 (339)
T 2be1_A 87 -----QLV-STSPLHL-K----TNIVV----------------------NDSGKIVEDEKVYTGSMRTIMYTINMLNGEI 133 (339)
T ss_dssp -----HHH-TTCSEEE-E----CC--------------------------------CCEEEEECEEEEEEEEEETTTCCE
T ss_pred -----cce-ecccccc-C----CCcee----------------------ecccccccCCEEEEEecCCEEEEEECCCCcE
Confidence 000 0001100 0 00000 0000001245678899999999999999999
Q ss_pred eeEEeeccceec-----eeEEEEc-----CCCCEEEEecCCceEEEee
Q psy988 285 SCKYKGYVNVSS-----QIKASFS-----HDGKYIVSGSENQCIYIWK 322 (408)
Q Consensus 285 ~~~~~~~~~~~~-----v~~~~~s-----~~~~~l~~~~~dg~i~iw~ 322 (408)
+..+........ ..+.... ..+..|+.+..+..+.+.+
T Consensus 134 ~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~ 181 (339)
T 2be1_A 134 ISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS 181 (339)
T ss_dssp EEEESTTCBCC--------------------CCEEEEEEEEEECEECC
T ss_pred EEEEecCCCcccccccccccccccccccccCCCeEEEecceEEEEEEC
Confidence 988874321110 0011110 1235677777676666666
No 339
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.57 E-value=0.47 Score=43.94 Aligned_cols=154 Identities=14% Similarity=0.161 Sum_probs=83.1
Q ss_pred CCCEEEEEeCC----CcEEEEecCCCCceeee-e-----ecCCceeeEEEEEecCCCEEEEEecC------CEEEEEecc
Q psy988 34 DDRYFLSGSLD----GKLRLWNIPDKKVAVWN-E-----VEGQTKLITAANFCENGKFAVVGSYD------GRCIFYTTD 97 (408)
Q Consensus 34 ~~~~l~t~~~d----g~i~iw~~~~~~~~~~~-~-----~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iw~~~ 97 (408)
++.+++.||.+ ..+.+||..++...... . .......-..+.+..+++.++.|+.+ ..+.+||..
T Consensus 397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~ 476 (695)
T 2zwa_A 397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMK 476 (695)
T ss_dssp SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETT
T ss_pred CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCC
Confidence 67788888753 46889998887765433 1 11111112222222277777777754 357888888
Q ss_pred CCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCC--eEEEEEccCcccceeec---CccccccceEEEEecC
Q psy988 98 QLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDS--RIRLYDLRDLNLSCKYK---GYVNVSSQIKASFSHD 172 (408)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 172 (408)
+....... ..... ..-.+++...++..++.|+.++ .+.+||+.+.+-...-. ..........+.+..+
T Consensus 477 t~~W~~~~---~~p~~----R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~ 549 (695)
T 2zwa_A 477 TREWSMIK---SLSHT----RFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPV 549 (695)
T ss_dssp TTEEEECC---CCSBC----CBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETT
T ss_pred CCcEEECC---CCCCC----cccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCC
Confidence 76543221 11110 1112223323677888886644 79999998765332211 1111111222445554
Q ss_pred -CCEEEEeec--C-----ceEEEeeeccce
Q psy988 173 -GKYIVSGSE--N-----QCIYIWKTHHDY 194 (408)
Q Consensus 173 -~~~l~~~~~--d-----g~i~i~d~~~~~ 194 (408)
++.++.|+. + ..+..||+.+..
T Consensus 550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 550 SKQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp TTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred CCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 667777765 2 358888886643
No 340
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.54 E-value=0.26 Score=40.52 Aligned_cols=95 Identities=6% Similarity=-0.070 Sum_probs=46.3
Q ss_pred EEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeC----CC-------eEEEEEccCcccceeecCc
Q psy988 90 RCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSN----DS-------RIRLYDLRDLNLSCKYKGY 158 (408)
Q Consensus 90 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----dg-------~i~i~d~~~~~~~~~~~~~ 158 (408)
.+..||..+.+... ...... . ..........++..++.|+. ++ .+..||..+.+-...-...
T Consensus 25 ~~~~yd~~~~~W~~-~~~~~~-~-----~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p 97 (318)
T 2woz_A 25 AAVAYDPMENECYL-TALAEQ-I-----PRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLP 97 (318)
T ss_dssp EEEEEETTTTEEEE-EEECTT-S-----CSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBS
T ss_pred ceEEECCCCCceec-ccCCcc-C-----CccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCC
Confidence 47899998887544 111110 0 01112223346777777763 12 2778888776543221111
Q ss_pred cccccceEEEEecCCCEEEEeecC-------ceEEEeeeccc
Q psy988 159 VNVSSQIKASFSHDGKYIVSGSEN-------QCIYIWKTHHD 193 (408)
Q Consensus 159 ~~~~~~~~~~~~~~~~~l~~~~~d-------g~i~i~d~~~~ 193 (408)
.... -.+++ ..+++.++.|+.+ ..+.+||+.+.
T Consensus 98 ~~r~-~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~ 137 (318)
T 2woz_A 98 SARC-LFGLG-EVDDKIYVVAGKDLQTEASLDSVLCYDPVAA 137 (318)
T ss_dssp SCBC-SCEEE-EETTEEEEEEEEBTTTCCEEEEEEEEETTTT
T ss_pred cccc-ccceE-EECCEEEEEcCccCCCCcccceEEEEeCCCC
Confidence 1111 11122 2266777777754 24677776543
No 341
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.42 E-value=0.31 Score=40.05 Aligned_cols=177 Identities=12% Similarity=0.106 Sum_probs=88.0
Q ss_pred eEEEEeccCCeeEeEEE-e-CCceEEEEEcCCCCCEEEEEeC----CC-------cEEEEecCCCCceeeeeecCCceee
Q psy988 4 TVRLWHISRKECLCCFQ-H-IDFVTAICFHPRDDRYFLSGSL----DG-------KLRLWNIPDKKVAVWNEVEGQTKLI 70 (408)
Q Consensus 4 ~i~vwd~~~~~~~~~~~-h-~~~v~~~~~sp~~~~~l~t~~~----dg-------~i~iw~~~~~~~~~~~~~~~~~~~v 70 (408)
.+..||..+.+-...-. . ...-....... ++.+++.|+. ++ .+.+||..+.+......+.......
T Consensus 25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~ 103 (318)
T 2woz_A 25 AAVAYDPMENECYLTALAEQIPRNHSSIVTQ-QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLF 103 (318)
T ss_dssp EEEEEETTTTEEEEEEECTTSCSSEEEEECS-SSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSC
T ss_pred ceEEECCCCCceecccCCccCCccceEEEEE-CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcccccc
Confidence 36778888777544211 1 11222223344 7788888873 12 1778888777654332222222112
Q ss_pred EEEEEecCCCEEEEEecC-------CEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeC------
Q psy988 71 TAANFCENGKFAVVGSYD-------GRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSN------ 137 (408)
Q Consensus 71 ~~~~~~~~~~~l~~~~~d-------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------ 137 (408)
..+.+ +++.++.|+.+ ..+.+||..+.+...... ..... ..-..+. .++..++.|+.
T Consensus 104 ~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~---~p~~r---~~~~~~~--~~~~iyv~GG~~~~~~~ 173 (318)
T 2woz_A 104 GLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKN---LPIKV---YGHNVIS--HNGMIYCLGGKTDDKKC 173 (318)
T ss_dssp EEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECC---CSSCE---ESCEEEE--ETTEEEEECCEESSSCB
T ss_pred ceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCC---CCCcc---cccEEEE--ECCEEEEEcCCCCCCCc
Confidence 22222 66777777754 357888888776543211 11110 0111122 35666666653
Q ss_pred CCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecC-----ceEEEeeeccc
Q psy988 138 DSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSEN-----QCIYIWKTHHD 193 (408)
Q Consensus 138 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~ 193 (408)
-..+.+||+.+.+-...-....... ..++ ..-+++.++.|+.+ ..+.+||+.+.
T Consensus 174 ~~~~~~yd~~~~~W~~~~~~p~~r~-~~~~-~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 232 (318)
T 2woz_A 174 TNRVFIYNPKKGDWKDLAPMKTPRS-MFGV-AIHKGKIVIAGGVTEDGLSASVEAFDLKTN 232 (318)
T ss_dssp CCCEEEEETTTTEEEEECCCSSCCB-SCEE-EEETTEEEEEEEEETTEEEEEEEEEETTTC
T ss_pred cceEEEEcCCCCEEEECCCCCCCcc-cceE-EEECCEEEEEcCcCCCCccceEEEEECCCC
Confidence 2458999998765332211111111 1122 22366777777653 34667776543
No 342
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=96.16 E-value=0.87 Score=42.71 Aligned_cols=348 Identities=9% Similarity=0.028 Sum_probs=175.3
Q ss_pred EEEEeccCCeeEeEEE-----eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecC----CceeeEEEEE
Q psy988 5 VRLWHISRKECLCCFQ-----HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEG----QTKLITAANF 75 (408)
Q Consensus 5 i~vwd~~~~~~~~~~~-----h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~----~~~~v~~~~~ 75 (408)
|..+|..+++...... ....|.++...+ ++.+.+ |+.+ -+..++..++..... .... ....|.++..
T Consensus 123 l~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lWi-gt~~-Gl~~~~~~~~~~~~~-~~~~~~~~~~~~i~~i~~ 198 (758)
T 3ott_A 123 LYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTK-DNQIYV-GTYN-GLCRYIPSNGKFEGI-PLPVHSSQSNLFVNSLLE 198 (758)
T ss_dssp EEEEETTTCCEEEECHHHHCCSCSCEEEEEECT-TCCEEE-EETT-EEEEEETTTTEEEEE-CCCCCTTCSSCCEEEEEE
T ss_pred ceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcC-CCCEEE-EeCC-CHhhCccCCCceEEe-cCCCccccccceeEEEEE
Confidence 4556665554332211 134688888877 666544 5544 477888776654321 1111 1234788887
Q ss_pred ecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceee
Q psy988 76 CENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKY 155 (408)
Q Consensus 76 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 155 (408)
.+++..|..|+. +-+..++..+.+........ ...|.++...+++. |..|+. +-+.+++..+++.....
T Consensus 199 d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~--------~~~i~~i~~d~~g~-lWigT~-~Gl~~~~~~~~~~~~~~ 267 (758)
T 3ott_A 199 DTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFH--------NNSIKSLALDGNGD-LLAGTD-NGLYVYHNDTTPLQHII 267 (758)
T ss_dssp ETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEE--------EEEEEEEEECTTCC-EEEEET-TEEEEECCTTSCCEEEC
T ss_pred ECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCC--------CCeEEEEEEcCCCC-EEEEeC-CceeEEecCCCcEEEEE
Confidence 777776666664 45888888766543221111 13578888776664 555554 45888887765432211
Q ss_pred cC-----ccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCccee
Q psy988 156 KG-----YVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELI 230 (408)
Q Consensus 156 ~~-----~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 230 (408)
.. ......+.++....+|. |..|+..| +.++............. . .-......|.++....+|...
T Consensus 268 ~~~~~~~~l~~~~i~~i~~D~~g~-lWiGT~~G-l~~~~~~~~~~~~~~~~-~------~~~~~~~~v~~i~~D~~g~lW 338 (758)
T 3ott_A 268 HDSRNIQSLTNNIIWNIFADQEHN-IWLGTDYG-ISLSRYNSALQFIPISQ-I------TGTGDGNQFYSLFRDSKGFYW 338 (758)
T ss_dssp CCTTCTTSCSCSCEEEEEECTTCC-EEEEESSS-EEEECCCC-CEEEEHHH-H------SCSCCCCBEEEEEECTTCCEE
T ss_pred cCCCCcCcCCcCeEEEEEEcCCCC-EEEEeCCc-ccccccCCceeEEeccc-C------CCCCCCceEEEEEEcCCCCEE
Confidence 11 01123366676676665 55565566 54443221111000000 0 000122457777777777665
Q ss_pred eeecC------CCCC-CCceeeec-------CCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeecc----
Q psy988 231 IAQME------PDKS-ESTGYVLN-------ATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV---- 292 (408)
Q Consensus 231 ~~~~~------~~~~-~~~~~~~~-------~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---- 292 (408)
+.+.. .... ......+. .....|.++.-.++++..+ |+ ++-+..||..+++.........
T Consensus 339 iGt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWi-gt-~~GL~~~~~~~~~~~~~~~~~~~~~~ 416 (758)
T 3ott_A 339 FGGANGLIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWI-AT-DGSINRYDYATRQFIHYNIVDNTGTY 416 (758)
T ss_dssp EEETTEEEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEE-EE-TTEEEEEETTTTEEEEEEEECCC--C
T ss_pred EeeCCcceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEE-Ee-CCcHhhcCcCCCcEEEeecCCCcCCC
Confidence 54321 1100 00111111 1234578888888877555 44 3469999988775433221111
Q ss_pred ceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccc-cccccCccccceeeee-eccceEEEEecCCchhhhhccCCC
Q psy988 293 NVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKF-SSVRRDRNDFWEGIKA-HNAVVTCAVFAPCPELIIAQMEPD 370 (408)
Q Consensus 293 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~-~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~~ 370 (408)
....|.++...++|++.+ |+..+-+.+++..+..... ...... .......+ ....|.++...+
T Consensus 417 ~~~~v~~i~~d~~g~lWi-gT~~~Gl~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~i~~i~~d~------------ 481 (758)
T 3ott_A 417 NTNWTYYIFEDTAGQLWI-STCLGGIFVVDKHKLMQSTSGQYIAE--QNYSVHNGLSGMFINQIIPDN------------ 481 (758)
T ss_dssp BSSSEEEEEECTTSEEEE-EESSSCEEEEEHHHHHHCCSSEEECS--EEECGGGTCSCSCEEEEEECT------------
T ss_pred CCceEEEEEEcCCCCEEE-EECCCceEEEccccccccCCcceecc--cccccccccccceeeeEEEcC------------
Confidence 123467777777776544 5555568888765310000 000000 00000000 123588888887
Q ss_pred CCCCcccEEEEEecCCeEEEEeCCCCC
Q psy988 371 KSESTGYVLVSADFNGVIRVFLNKTKP 397 (408)
Q Consensus 371 ~~s~~~~~l~s~~~dg~v~iw~~~~~~ 397 (408)
+|++.+.++..+-|..++..+.+
T Consensus 482 ----~g~lWi~~~t~~Gl~~~d~~~~~ 504 (758)
T 3ott_A 482 ----EGNVWVLLYNNKGIDKINPRTRE 504 (758)
T ss_dssp ----TSCEEEEETTCSSEEEEETTTTE
T ss_pred ----CCCEEEEccCCCCcEEEeCCCCc
Confidence 77777633334447777776543
No 343
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.12 E-value=0.31 Score=37.14 Aligned_cols=62 Identities=13% Similarity=-0.026 Sum_probs=37.8
Q ss_pred eeeccCCCCCeEEEecCCCeEEEEEcCCCeee-----eEEeeccceeceeEEEEcCCCCEEEEecCCceEE
Q psy988 254 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLS-----CKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIY 319 (408)
Q Consensus 254 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 319 (408)
..+.|.|+|.+.++ .||.|+-++-.+...- ...-+......+..+.|.|+|.+.++. |+.++
T Consensus 91 ~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~ly 157 (236)
T 1tl2_A 91 QFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFY 157 (236)
T ss_dssp SEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred eEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEE
Confidence 34556666766666 5688887775431110 111122233456789999999988877 77754
No 344
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.03 E-value=0.82 Score=42.31 Aligned_cols=184 Identities=10% Similarity=0.107 Sum_probs=93.7
Q ss_pred eEEEEeccCCeeEeEE-E-------eC-CceEEEEEcCCCCCEEEEEeCC------CcEEEEecCCCCceeeeeecCCce
Q psy988 4 TVRLWHISRKECLCCF-Q-------HI-DFVTAICFHPRDDRYFLSGSLD------GKLRLWNIPDKKVAVWNEVEGQTK 68 (408)
Q Consensus 4 ~i~vwd~~~~~~~~~~-~-------h~-~~v~~~~~sp~~~~~l~t~~~d------g~i~iw~~~~~~~~~~~~~~~~~~ 68 (408)
.+.+||+.+++-...- . .. ..-.++.+.. ++.+++.||.+ ..+.+||..+........+.....
T Consensus 413 ~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~ 491 (695)
T 2zwa_A 413 EILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRF 491 (695)
T ss_dssp CEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCB
T ss_pred cEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcc
Confidence 4677787776544332 1 11 1123334433 56677777754 357889988866543322222111
Q ss_pred eeEEEEEecCCCEEEEEecCC--EEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCC-CCeEEEeeC--C-----
Q psy988 69 LITAANFCENGKFAVVGSYDG--RCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPG-EDKILVTSN--D----- 138 (408)
Q Consensus 69 ~v~~~~~~~~~~~l~~~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~--d----- 138 (408)
.-.+ ....+++.++.|+.++ .+.+||..+.............. ......++.+..+ +..++.|+. +
T Consensus 492 ~h~~-~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~---~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~ 567 (695)
T 2zwa_A 492 RHSA-CSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQ---NSLVSAGLEFDPVSKQGIILGGGFMDQTTVS 567 (695)
T ss_dssp SCEE-EECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGG---SCCBSCEEEEETTTTEEEEECCBCTTSSCBC
T ss_pred cceE-EEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCC---cccceeEEEEeCCCCEEEEECCcCCCCCeee
Confidence 1222 2223788888887654 68999998876432211000110 1112223444444 556666654 2
Q ss_pred CeEEEEEccCccc-----ceeecC--ccccccceEEEEecCCCEEEEeecC--------ceEEEeeeccc
Q psy988 139 SRIRLYDLRDLNL-----SCKYKG--YVNVSSQIKASFSHDGKYIVSGSEN--------QCIYIWKTHHD 193 (408)
Q Consensus 139 g~i~i~d~~~~~~-----~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~ 193 (408)
..+.+||+.+.+. -..+.. ..... -.+++...+++.++.|+.+ ..+.+||+.+.
T Consensus 568 ~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~ 636 (695)
T 2zwa_A 568 DKAIIFKYDAENATEPITVIKKLQHPLFQRY-GSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSE 636 (695)
T ss_dssp CEEEEEEECTTCSSCCEEEEEEEECGGGCCB-SCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTT
T ss_pred CcEEEEEccCCccccceEEEEcCCCCCCCcc-cceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCC
Confidence 4688999988762 111111 11111 1123333337777777743 35788887654
No 345
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.33 E-value=1 Score=37.52 Aligned_cols=67 Identities=15% Similarity=0.160 Sum_probs=37.4
Q ss_pred CCCEEEEEeCC-CcEEEEecCC--CCceeeeeec-CCceeeEEEEEecCCCEEEEEec-C---------CEEEEEeccCC
Q psy988 34 DDRYFLSGSLD-GKLRLWNIPD--KKVAVWNEVE-GQTKLITAANFCENGKFAVVGSY-D---------GRCIFYTTDQL 99 (408)
Q Consensus 34 ~~~~l~t~~~d-g~i~iw~~~~--~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~-d---------g~i~iw~~~~~ 99 (408)
++.+++.|+.+ ..+.++|+.. .+......+. .......++. -+++.++.|+. + ..+.+||..+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAF--IDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEE--ETTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEE--ECCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 56677777654 5688888864 4443222222 1111122222 25677777765 2 46888998876
Q ss_pred eee
Q psy988 100 KYH 102 (408)
Q Consensus 100 ~~~ 102 (408)
+..
T Consensus 97 ~W~ 99 (357)
T 2uvk_A 97 SWV 99 (357)
T ss_dssp EEE
T ss_pred cEE
Confidence 643
No 346
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=95.32 E-value=0.92 Score=36.85 Aligned_cols=137 Identities=9% Similarity=0.027 Sum_probs=78.1
Q ss_pred EEEcCCCCCEEEEEeCC--------------CcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEe--cC--C
Q psy988 28 ICFHPRDDRYFLSGSLD--------------GKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGS--YD--G 89 (408)
Q Consensus 28 ~~~sp~~~~~l~t~~~d--------------g~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d--g 89 (408)
--+++ ++++|+-+... ..|+..++++.+.. .+.... +..|++++++|+-.. .+ .
T Consensus 58 ~~i~~-~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~---~l~~~~----~~~~s~~g~~Iy~~~~~~~~~~ 129 (302)
T 3s25_A 58 MYINA-DKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGST---VLDPDP----CIYASLIGNYIYYLHYDTQTAT 129 (302)
T ss_dssp EEEEE-CSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCE---EEECSC----EEEEEEETTEEEEEEESSSSCE
T ss_pred eeEEE-cCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcce---EeecCC----ccEEEEeCCEEEEEeecCCCCc
Confidence 34577 77777766543 35777777776543 232222 226778888888776 23 4
Q ss_pred EEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeC-CCeEEEEEccCcccceeecCccccccceEEE
Q psy988 90 RCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSN-DSRIRLYDLRDLNLSCKYKGYVNVSSQIKAS 168 (408)
Q Consensus 90 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 168 (408)
.|..-+++.... ..+. . ..+ ..++++++.|+..+. ...|...++..+.....+.+.. ...
T Consensus 130 ~Iy~~~~dGs~~-~~lt-~---------~~~--~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~~~------~~~ 190 (302)
T 3s25_A 130 SLYRIRIDGEEK-KKIK-N---------HYL--FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDCNC------YKP 190 (302)
T ss_dssp EEEEEETTSCCC-EEEE-S---------SCC--CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECSCE------EEE
T ss_pred eEEEEECCCCCe-EEEe-C---------CCc--eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCCCc------cce
Confidence 555555554332 1111 1 011 356778888887765 5788888887665443333211 123
Q ss_pred EecCCCEEEEeecCc--eEEEeeec
Q psy988 169 FSHDGKYIVSGSENQ--CIYIWKTH 191 (408)
Q Consensus 169 ~~~~~~~l~~~~~dg--~i~i~d~~ 191 (408)
+.|++.+|+-....+ .|..-++.
T Consensus 191 ~~P~g~~iy~t~~~~~~~I~~~~ld 215 (302)
T 3s25_A 191 VVLDDTNVYYMDVNRDNAIVHVNIN 215 (302)
T ss_dssp EEEETTEEEEEEGGGTTEEEEECSS
T ss_pred eeecCCEEEEEEcCCCcEEEEEECC
Confidence 568888888765443 44444443
No 347
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=95.21 E-value=1.2 Score=37.42 Aligned_cols=141 Identities=7% Similarity=0.109 Sum_probs=78.3
Q ss_pred eEEEEeccCC--eeEeEEEe-------CCceEEEEEc---CC--C-CCEEEEE-eCCCcEEEEecCCCCceeee------
Q psy988 4 TVRLWHISRK--ECLCCFQH-------IDFVTAICFH---PR--D-DRYFLSG-SLDGKLRLWNIPDKKVAVWN------ 61 (408)
Q Consensus 4 ~i~vwd~~~~--~~~~~~~h-------~~~v~~~~~s---p~--~-~~~l~t~-~~dg~i~iw~~~~~~~~~~~------ 61 (408)
+|.+||+.+. +.++.+.- ...+..+.+. |. . +.++..+ +..+-|.++|+.+++.-...
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5889999999 99988862 3457788877 21 1 2333333 34678999999887643211
Q ss_pred ------eecCC----ceeeEEEEEecC----CCEEEEEecCCEEEEEeccC-----CeeeEEEEEeeccccccCCCCeEE
Q psy988 62 ------EVEGQ----TKLITAANFCEN----GKFAVVGSYDGRCIFYTTDQ-----LKYHTQIHVRSTRGKNATGRKISG 122 (408)
Q Consensus 62 ------~~~~~----~~~v~~~~~~~~----~~~l~~~~~dg~i~iw~~~~-----~~~~~~~~~~~~~~~~~~~~~v~~ 122 (408)
...+. ...+..++++|+ ++.|.-....+ -++|.+.+ .......... +..+....-..
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~---G~kg~~s~~~~ 279 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELL---GNRGKYNDAIA 279 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEE---EECCTTCCEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEe---eecCCCCCcce
Confidence 00111 136788888887 66666665443 23333321 1110000000 11111123344
Q ss_pred EeeC-CCCCeEEEeeCCCeEEEEEccC
Q psy988 123 IEPM-PGEDKILVTSNDSRIRLYDLRD 148 (408)
Q Consensus 123 ~~~~-~~~~~l~~~~~dg~i~i~d~~~ 148 (408)
++.. .+|..+++--+.+.|..|+..+
T Consensus 280 ~~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 280 LAYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp EEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred EEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 5665 4565555656778999999875
No 348
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=94.91 E-value=1.9 Score=38.13 Aligned_cols=78 Identities=8% Similarity=0.071 Sum_probs=53.3
Q ss_pred CCceeeeeccCCCCCeEEEe-cCCCeEEEEEcCCCe------e---eeE-EeeccceeceeEEEEcCCCCEEEEecCCce
Q psy988 249 TGRKISGIEPMPGEDKILVT-SNDSRIRLYDLRDLN------L---SCK-YKGYVNVSSQIKASFSHDGKYIVSGSENQC 317 (408)
Q Consensus 249 ~~~~i~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~------~---~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 317 (408)
....+..+.++|||++++++ -.+.++.++|++... . ... .....-.......+|.++|....+---|..
T Consensus 321 ~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSq 400 (638)
T 3sbq_A 321 VPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQ 400 (638)
T ss_dssp ESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTE
T ss_pred CCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecce
Confidence 34556778899999999886 457899999987421 1 000 111111224456899999966666778999
Q ss_pred EEEeecccc
Q psy988 318 IYIWKTHHD 326 (408)
Q Consensus 318 i~iw~~~~~ 326 (408)
|.-|++...
T Consensus 401 vvkWni~~a 409 (638)
T 3sbq_A 401 VVKWNMEEA 409 (638)
T ss_dssp EEEEEHHHH
T ss_pred EEEEeccHH
Confidence 999999764
No 349
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=94.14 E-value=2 Score=35.26 Aligned_cols=251 Identities=8% Similarity=0.051 Sum_probs=123.2
Q ss_pred CCEEEEEeCCCcEEEEecCCCC-------ceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCee---e-E
Q psy988 35 DRYFLSGSLDGKLRLWNIPDKK-------VAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKY---H-T 103 (408)
Q Consensus 35 ~~~l~t~~~dg~i~iw~~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~---~-~ 103 (408)
...+++.+.+|.|+--.+.+-. -..-..++ ....+..+........|+.-+..|.++-.....-.. . .
T Consensus 3 E~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~k-e~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~ 81 (327)
T 3uc1_A 3 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLK-QDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTAR 81 (327)
T ss_dssp CEEEEEEETTSEEEEEEHHHHHHHC--------CCCC-GGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSC
T ss_pred ccEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccC-CCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCC
Confidence 4578888888888866543211 01001222 223455554455566677777788776655432111 0 0
Q ss_pred EEEEeeccccccCCCCeEEEeeCC---CCCeEEEeeCCCeEEEEEccCcccce-----eecCccccccceEEEEecCCCE
Q psy988 104 QIHVRSTRGKNATGRKISGIEPMP---GEDKILVTSNDSRIRLYDLRDLNLSC-----KYKGYVNVSSQIKASFSHDGKY 175 (408)
Q Consensus 104 ~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 175 (408)
...+...... .....|..+...+ +...++..+.+|.++-..+....... .+.... ...+..+........
T Consensus 82 G~~i~~~l~l-~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ 159 (327)
T 3uc1_A 82 GQHVANLLAF-QPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDD 159 (327)
T ss_dssp CEEHHHHTTC-CTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCE
T ss_pred CEEHHHccCC-CCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCE
Confidence 0011011111 1233555554333 57799999999999998876533211 111111 122444444455567
Q ss_pred EEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeee
Q psy988 176 IVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISG 255 (408)
Q Consensus 176 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 255 (408)
|+..+..|.+..+....+.. .........+..+.+ ..+..|.+
T Consensus 160 ill~T~~G~~~rf~~~~~ei-------------p~~gr~a~Gv~~i~L------------------------~~~d~Vv~ 202 (327)
T 3uc1_A 160 LLLVSANGQSIRFSATDEAL-------------RPMGRATSGVQGMRF------------------------NIDDRLLS 202 (327)
T ss_dssp EEEEETTSEEEEEECCTTTS-------------CCCCTTSBCEESSCC------------------------CTTCCEEE
T ss_pred EEEEECCCeEEEEECccccc-------------CcCCcCCCCeeeecC------------------------CCCCEEEE
Confidence 88888889888777641000 000000011111111 11223344
Q ss_pred eccCCCCCeEEEecCCCeEEEEEcCCCeee-------eEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccc
Q psy988 256 IEPMPGEDKILVTSNDSRIRLYDLRDLNLS-------CKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHH 325 (408)
Q Consensus 256 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 325 (408)
+...+++.+++..+..|.++.-.+...... ..+........+..+....+...++..+.+|.+.-++...
T Consensus 203 ~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 203 LNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp EEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred EEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence 444445567888889999888876532221 1111111112344444334445666667777777777654
No 350
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=94.03 E-value=4 Score=38.26 Aligned_cols=299 Identities=8% Similarity=0.084 Sum_probs=153.4
Q ss_pred EEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeee-c-CCceeeEEEEEecCCCE
Q psy988 5 VRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEV-E-GQTKLITAANFCENGKF 81 (408)
Q Consensus 5 i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~-~-~~~~~v~~~~~~~~~~~ 81 (408)
+..||..+.+...... ....|.++.. . ++. |..++.+ -+..++..+++....... . .....|.++....+|.+
T Consensus 84 l~~yd~~~~~f~~~~~~~~~~i~~i~~-~-~g~-lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~l 159 (758)
T 3ott_A 84 ILVYNYRADRYEQPETDFPTDVRTMAL-Q-GDT-LWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQI 159 (758)
T ss_dssp EEEEETTTTEECCCSCCCCSCEEEEEE-E-TTE-EEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCE
T ss_pred eEEEeCCCCEEECcccCCCceEEEEEe-c-CCc-EEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCE
Confidence 4566666554322111 2235777654 3 454 5556655 588889877665422110 0 11345788877777775
Q ss_pred EEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCcccc
Q psy988 82 AVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNV 161 (408)
Q Consensus 82 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 161 (408)
.+ ++.+ -+..++..+.+... .... .........|.++...+++..|..|+. +-+..+|..+++... +... ..
T Consensus 160 Wi-gt~~-Gl~~~~~~~~~~~~-~~~~--~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~-~~~l-~~ 231 (758)
T 3ott_A 160 YV-GTYN-GLCRYIPSNGKFEG-IPLP--VHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQ-TEAF-HN 231 (758)
T ss_dssp EE-EETT-EEEEEETTTTEEEE-ECCC--CCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEE-EEEE-EE
T ss_pred EE-EeCC-CHhhCccCCCceEE-ecCC--CccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEe-ccCC-CC
Confidence 44 5544 57778877654321 1111 000111234788887777777777764 468888987654322 2111 12
Q ss_pred ccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCC---
Q psy988 162 SSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDK--- 238 (408)
Q Consensus 162 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--- 238 (408)
..+.++....+|.. ..|+.+ -+.+++..+..... ...... .........|.++....++...+.+.....
T Consensus 232 ~~i~~i~~d~~g~l-WigT~~-Gl~~~~~~~~~~~~--~~~~~~---~~~~l~~~~i~~i~~D~~g~lWiGT~~Gl~~~~ 304 (758)
T 3ott_A 232 NSIKSLALDGNGDL-LAGTDN-GLYVYHNDTTPLQH--IIHDSR---NIQSLTNNIIWNIFADQEHNIWLGTDYGISLSR 304 (758)
T ss_dssp EEEEEEEECTTCCE-EEEETT-EEEEECCTTSCCEE--ECCCTT---CTTSCSCSCEEEEEECTTCCEEEEESSSEEEEC
T ss_pred CeEEEEEEcCCCCE-EEEeCC-ceeEEecCCCcEEE--EEcCCC---CcCcCCcCeEEEEEEcCCCCEEEEeCCcccccc
Confidence 23666777767764 445544 47788875432111 000000 000112345788887777766555422100
Q ss_pred CCCceeee-------cCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCe--eeeEEeec-----cceeceeEEEEcC
Q psy988 239 SESTGYVL-------NATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLN--LSCKYKGY-----VNVSSQIKASFSH 304 (408)
Q Consensus 239 ~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~-----~~~~~v~~~~~s~ 304 (408)
........ ......|.++....+|...+. +.+| +..++..+++ ....+... -....|.++.-.+
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiG-t~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~ 382 (758)
T 3ott_A 305 YNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFG-GANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDK 382 (758)
T ss_dssp CCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEE-ETTE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECT
T ss_pred cCCceeEEecccCCCCCCCceEEEEEEcCCCCEEEe-eCCc-ceeecccccccceeEEeccCCcCCCCCCCceEEEEECC
Confidence 00000000 012345778887877776554 4444 6666655432 11122210 0123477788788
Q ss_pred CCCEEEEecCCceEEEeecccc
Q psy988 305 DGKYIVSGSENQCIYIWKTHHD 326 (408)
Q Consensus 305 ~~~~l~~~~~dg~i~iw~~~~~ 326 (408)
+|++.+ |+ ++-+..|+..++
T Consensus 383 ~g~lWi-gt-~~GL~~~~~~~~ 402 (758)
T 3ott_A 383 EQQLWI-AT-DGSINRYDYATR 402 (758)
T ss_dssp TSCEEE-EE-TTEEEEEETTTT
T ss_pred CCCEEE-Ee-CCcHhhcCcCCC
Confidence 887655 34 356888887664
No 351
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=93.68 E-value=3.3 Score=36.05 Aligned_cols=29 Identities=3% Similarity=0.173 Sum_probs=24.0
Q ss_pred CeEEEeeCCCCC-eEEEeeCCCeEEEEEcc
Q psy988 119 KISGIEPMPGED-KILVTSNDSRIRLYDLR 147 (408)
Q Consensus 119 ~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~ 147 (408)
....|+|.|++. .|+++...|.|++++..
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~ 44 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPE 44 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence 567899999996 67778888999999754
No 352
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=93.54 E-value=3.4 Score=35.90 Aligned_cols=113 Identities=12% Similarity=0.128 Sum_probs=59.1
Q ss_pred eeEEEEEecCCC-EEEEEecCCEEEEEeccCCeeeEE-EEEeecccc---ccCCCCeEEEeeCCC---CCeEEEe-eC--
Q psy988 69 LITAANFCENGK-FAVVGSYDGRCIFYTTDQLKYHTQ-IHVRSTRGK---NATGRKISGIEPMPG---EDKILVT-SN-- 137 (408)
Q Consensus 69 ~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~-~~~~~~~~~---~~~~~~v~~~~~~~~---~~~l~~~-~~-- 137 (408)
....|+|.|+|. .|+++...|.|++++......... ..+...... ......+..|+++|+ +..|++. +.
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 457899999996 566667899999997543211100 111111000 011356889999996 3444443 21
Q ss_pred C----------CeEEEEEccCc----------ccceeecCccccccceEEEEecCCCEEEEeec
Q psy988 138 D----------SRIRLYDLRDL----------NLSCKYKGYVNVSSQIKASFSHDGKYIVSGSE 181 (408)
Q Consensus 138 d----------g~i~i~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 181 (408)
+ ..|.-|.+..+ +.+..+.........-.+.|.|||.+.++.+.
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd 158 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD 158 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence 1 13444555421 11111111111122446899999987666554
No 353
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=92.02 E-value=4.9 Score=33.76 Aligned_cols=127 Identities=16% Similarity=0.147 Sum_probs=72.6
Q ss_pred ceEEEEE-cCCCCCEEEEEeC--C---CcEEEEecCC--------CCceeeeeecC-----CceeeEEEEEecCCCEEEE
Q psy988 24 FVTAICF-HPRDDRYFLSGSL--D---GKLRLWNIPD--------KKVAVWNEVEG-----QTKLITAANFCENGKFAVV 84 (408)
Q Consensus 24 ~v~~~~~-sp~~~~~l~t~~~--d---g~i~iw~~~~--------~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~ 84 (408)
-...++. +. +++++++--. + -++...+... +... ..+.. +--.|..+...+++++-+.
T Consensus 27 ~P~gv~vd~~-~gRiFvt~PR~~~gvp~TL~~v~~~~~~~~~~~~p~ll--~PYP~w~~~~~lvsV~~v~iD~~~rLWVL 103 (381)
T 3q6k_A 27 ISTAFAYDAE-GEKLFLAVPRKLPRVPYTLAEVDTKNSLGVKGKHSPLL--NKFSGHKTGKELTSIYQPVIDDCRRLWVV 103 (381)
T ss_dssp CCCEEEEETT-TTEEEEECCTTSTTCSCSEEEEEHHHHTTCTTCSSCCB--EECTTCSSSCSSSCEEEEEECTTCEEEEE
T ss_pred ceeeeeeecC-CCcEEEEeCCCCCCCCcEEEEEeCCCCcccccCCcccc--cCCCCCccccceEEeeEEEEcCCCcEEEE
Confidence 3456777 56 7777776543 2 2455554431 1220 12221 2235777777776654332
Q ss_pred --Ee-------------cCCEEEEEeccCC--eeeEEEEEeeccccccCCCCeEEEeeC---CC----CCeEEEee-CCC
Q psy988 85 --GS-------------YDGRCIFYTTDQL--KYHTQIHVRSTRGKNATGRKISGIEPM---PG----EDKILVTS-NDS 139 (408)
Q Consensus 85 --~~-------------~dg~i~iw~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~----~~~l~~~~-~dg 139 (408)
|- .--.|.+||+.+. +......+...... ....+..+.+. |+ +.+.+.+. ..+
T Consensus 104 DtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~--~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~ 181 (381)
T 3q6k_A 104 DIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVE--KPTYFGGFAVDVANPKGDCSETFVYITNFLRG 181 (381)
T ss_dssp ECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCC--CGGGEEEEEEEESCTTTTSCSEEEEEEETTTT
T ss_pred eCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcc--cCCccceEEEecccCCCCCCccEEEEEcCCCC
Confidence 10 1236889999998 87777766433222 23567888877 22 33444443 467
Q ss_pred eEEEEEccCcccceee
Q psy988 140 RIRLYDLRDLNLSCKY 155 (408)
Q Consensus 140 ~i~i~d~~~~~~~~~~ 155 (408)
.|.++|+.+++.-+.+
T Consensus 182 gLIVydl~~~~swRv~ 197 (381)
T 3q6k_A 182 ALFIYDHKKQDSWNVT 197 (381)
T ss_dssp EEEEEETTTTEEEEEE
T ss_pred cEEEEECCCCcEEEEc
Confidence 8999999988765544
No 354
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=91.41 E-value=11 Score=36.48 Aligned_cols=38 Identities=13% Similarity=0.149 Sum_probs=32.8
Q ss_pred eeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEe
Q psy988 252 KISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYK 289 (408)
Q Consensus 252 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 289 (408)
.+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 45667778888999999999999999999999887754
No 355
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=90.15 E-value=7.8 Score=32.77 Aligned_cols=107 Identities=7% Similarity=-0.061 Sum_probs=51.4
Q ss_pred CCEEEEEeCCCcEEEEecCC-C-CceeeeeecCCceeeEEEEEec-CCCEEEEEecCC----EEEEEeccCCeeeEEEEE
Q psy988 35 DRYFLSGSLDGKLRLWNIPD-K-KVAVWNEVEGQTKLITAANFCE-NGKFAVVGSYDG----RCIFYTTDQLKYHTQIHV 107 (408)
Q Consensus 35 ~~~l~t~~~dg~i~iw~~~~-~-~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg----~i~iw~~~~~~~~~~~~~ 107 (408)
...|..|...| +.+++... + ....... ......|.+|++.| +...|.++...| .|...+ +.++.-.....
T Consensus 22 ~g~l~vgt~~G-l~~~~~~~~g~~W~~~~~-~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~ 98 (394)
T 3b7f_A 22 PVMLLVATIKG-AWFLASDPARRTWELRGP-VFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATR 98 (394)
T ss_dssp CCEEEEEETTE-EEEEEECTTSCSEEEEEE-ESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSB
T ss_pred CCEEEEEecCc-eEEEECCCCCCCceECCc-cCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCc
Confidence 44677787776 55555443 2 2221111 12245699999998 334455555555 344332 22221111111
Q ss_pred ee-cccccc-----CCCCeEEEeeCCC--CCeEEEeeCCCeEEEE
Q psy988 108 RS-TRGKNA-----TGRKISGIEPMPG--EDKILVTSNDSRIRLY 144 (408)
Q Consensus 108 ~~-~~~~~~-----~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~ 144 (408)
.. ...... ....|.++++.|. ...+++++..+.|...
T Consensus 99 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S 143 (394)
T 3b7f_A 99 PPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRS 143 (394)
T ss_dssp CCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEE
T ss_pred cccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEE
Confidence 00 000000 1125778888873 5667777666655544
No 356
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=89.87 E-value=7 Score=31.77 Aligned_cols=155 Identities=12% Similarity=0.090 Sum_probs=79.3
Q ss_pred CCCEEEEEeCCCcEEEEecCCCCcee-------eeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeee----
Q psy988 34 DDRYFLSGSLDGKLRLWNIPDKKVAV-------WNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYH---- 102 (408)
Q Consensus 34 ~~~~l~t~~~dg~i~iw~~~~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~---- 102 (408)
+..++++.+.+|.|+--.+..-.... ...+... ..+..+......+.|+..+..|.+.-+....-...
T Consensus 2 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~-D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a 80 (307)
T 1zi0_A 2 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEE-DFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGA 80 (307)
T ss_dssp CCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSS
T ss_pred CCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCC-CEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCC
Confidence 56788899999999877665422110 0112222 23444444455566777778888776655321111
Q ss_pred EEEEEeeccccccCCCCeEEEeeC---CCCCeEEEeeCCCeEEEEEccCcccce-----eecCccccccceEEEEecCCC
Q psy988 103 TQIHVRSTRGKNATGRKISGIEPM---PGEDKILVTSNDSRIRLYDLRDLNLSC-----KYKGYVNVSSQIKASFSHDGK 174 (408)
Q Consensus 103 ~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~l~~~~~dg~i~i~d~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 174 (408)
.......... ......|..+... .++.+++..+..|.++-..+..-.... .+....+ ..+..+....+..
T Consensus 81 ~G~~i~~~l~-l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~ 158 (307)
T 1zi0_A 81 RGRPIVNLLP-LEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGED 158 (307)
T ss_dssp CCEEGGGTSC-CCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTC
T ss_pred CCeEhhhccC-CCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCC
Confidence 0000000001 1123356555432 346678999999999998875322211 1111111 2344444444555
Q ss_pred EEEEeecCceEEEeeec
Q psy988 175 YIVSGSENQCIYIWKTH 191 (408)
Q Consensus 175 ~l~~~~~dg~i~i~d~~ 191 (408)
.++..+.+|.+..++..
T Consensus 159 ~i~l~T~~G~~irf~~~ 175 (307)
T 1zi0_A 159 EVMLFSAEGKVVRFKES 175 (307)
T ss_dssp EEEEEETTSEEEEEEGG
T ss_pred EEEEECCCCcEEEEEHH
Confidence 67777788887777653
No 357
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=84.66 E-value=30 Score=33.46 Aligned_cols=39 Identities=15% Similarity=0.050 Sum_probs=33.2
Q ss_pred eeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEE
Q psy988 69 LITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHV 107 (408)
Q Consensus 69 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 107 (408)
.+.++...++..++++-+.|+++|+|++.+++.......
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL 275 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 275 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence 567777888889999999999999999999988766544
No 358
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=83.73 E-value=17 Score=29.84 Aligned_cols=167 Identities=10% Similarity=0.123 Sum_probs=93.0
Q ss_pred CCceEEEEEcCC--CCCEEEEEeCCCcEEEEecCCCCc-----eeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEE
Q psy988 22 IDFVTAICFHPR--DDRYFLSGSLDGKLRLWNIPDKKV-----AVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFY 94 (408)
Q Consensus 22 ~~~v~~~~~sp~--~~~~l~t~~~dg~i~iw~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 94 (408)
.+.|.++..-++ +..+++.++.+|.|+--.+..-.. .....+... ..+..+........++..+..|.+..+
T Consensus 94 ~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~-D~lv~~~~~~~~d~ill~T~~G~~~rf 172 (327)
T 3uc1_A 94 EERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDN-DELVGAVLCSAGDDLLLVSANGQSIRF 172 (327)
T ss_dssp TCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTT-CCEEEEEEECTTCEEEEEETTSEEEEE
T ss_pred CCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCC-CEEEEEEEecCCCEEEEEECCCeEEEE
Confidence 445655543331 467899999999999988754221 111233333 344455455556678888899999888
Q ss_pred ecc--CCeeeEE--EEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccc-------eeecCcccccc
Q psy988 95 TTD--QLKYHTQ--IHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLS-------CKYKGYVNVSS 163 (408)
Q Consensus 95 ~~~--~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-------~~~~~~~~~~~ 163 (408)
... .-..... .-.... .......|.++...+++..++..+..|.++.-.+..-... ..+........
T Consensus 173 ~~~~~eip~~gr~a~Gv~~i--~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~ 250 (327)
T 3uc1_A 173 SATDEALRPMGRATSGVQGM--RFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGR 250 (327)
T ss_dssp ECCTTTSCCCCTTSBCEESS--CCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCS
T ss_pred ECcccccCcCCcCCCCeeee--cCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCe
Confidence 876 3211000 000000 0112346777766666778999999999998876542221 11221111122
Q ss_pred ceEEEEecCCCEEEEeecCceEEEeeec
Q psy988 164 QIKASFSHDGKYIVSGSENQCIYIWKTH 191 (408)
Q Consensus 164 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 191 (408)
+..+....+...++..+.+|.+.-++..
T Consensus 251 lv~~~~~~~~~~i~l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 251 LVGALIVDDDSELYAVTSGGGVIRTAAR 278 (327)
T ss_dssp EEEEEEECTTCEEEEEEGGGCEEEEEGG
T ss_pred EEEEEEeCCCccEEEEcCCCeEEEEehh
Confidence 3333333344566666777777666653
No 359
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=83.66 E-value=19 Score=30.37 Aligned_cols=159 Identities=7% Similarity=-0.077 Sum_probs=74.3
Q ss_pred CCceEEEEEcCCCCCEEEEEeCCC----cEEEEecCCCC-ceeeee---ecC--------CceeeEEEEEecC--CCEEE
Q psy988 22 IDFVTAICFHPRDDRYFLSGSLDG----KLRLWNIPDKK-VAVWNE---VEG--------QTKLITAANFCEN--GKFAV 83 (408)
Q Consensus 22 ~~~v~~~~~sp~~~~~l~t~~~dg----~i~iw~~~~~~-~~~~~~---~~~--------~~~~v~~~~~~~~--~~~l~ 83 (408)
...|.+|++.|.+...|..++..| .|...+ +.++ ...... +.. ....|.++++.|. ...+.
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~ 132 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY 132 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred CCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence 456999999984455565565555 344332 2222 221111 111 1135778888862 45666
Q ss_pred EEecCCEEEEEeccCCeeeEEEEEeecccc-----------ccCCCCeEEEeeCCC-CCeEEEeeCCCeEEEEEccCccc
Q psy988 84 VGSYDGRCIFYTTDQLKYHTQIHVRSTRGK-----------NATGRKISGIEPMPG-EDKILVTSNDSRIRLYDLRDLNL 151 (408)
Q Consensus 84 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~-----------~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~ 151 (408)
++...+.|...+-..... ........... ......+.++.+.|. ...++++..++.|...+- .++.
T Consensus 133 ~g~~~ggl~~S~DgG~tW-~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~D-gG~t 210 (394)
T 3b7f_A 133 AGTSPQGLFRSTDHGASW-EPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTD-AGTD 210 (394)
T ss_dssp EEEETTEEEEESSTTSBC-EECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESS-TTSS
T ss_pred EEecCCcEEEEcCCCCCe-EECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECC-CCCC
Confidence 666666655543222221 11100000000 011235788999884 456666655554443321 2221
Q ss_pred ceeecC-ccc----------cccceEEEEecC-CCEEEEeecCc
Q psy988 152 SCKYKG-YVN----------VSSQIKASFSHD-GKYIVSGSENQ 183 (408)
Q Consensus 152 ~~~~~~-~~~----------~~~~~~~~~~~~-~~~l~~~~~dg 183 (408)
-..+.. ... ...+..+.+.|. ...|+++...+
T Consensus 211 W~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g 254 (394)
T 3b7f_A 211 WKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG 254 (394)
T ss_dssp CEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE
T ss_pred ceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe
Confidence 111111 000 123567788885 35676666544
No 360
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=82.57 E-value=18 Score=29.39 Aligned_cols=205 Identities=14% Similarity=0.114 Sum_probs=103.9
Q ss_pred cCCCEEEEEecCCEEEEEeccCCeeeEEE--EEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccC------
Q psy988 77 ENGKFAVVGSYDGRCIFYTTDQLKYHTQI--HVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRD------ 148 (408)
Q Consensus 77 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~------ 148 (408)
++..++++.+.+|.|+--.+...+..... ..... .......+..+........++..+..|.++-+....
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~--~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r 83 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSF--DLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSR 83 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECC--CCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC---
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceec--ccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCc
Confidence 56678889999999998877654321100 00000 001123455555555566788888888887776542
Q ss_pred ---cccceeecCccccccceEEEEec---CCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEE
Q psy988 149 ---LNLSCKYKGYVNVSSQIKASFSH---DGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAV 222 (408)
Q Consensus 149 ---~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 222 (408)
|..+...........+..+...+ +..+++..+..|.++...+..-... ....+..+.
T Consensus 84 ~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~-----------------r~~G~~~i~ 146 (312)
T 1suu_A 84 ASKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAV-----------------KSRGVIVIK 146 (312)
T ss_dssp ----CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC---------------------CEECBC
T ss_pred cCCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhcc-----------------CCCcEEEEe
Confidence 11111111111112233333222 4567888889998888766431000 011122222
Q ss_pred EeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCee-------eeEEeecccee
Q psy988 223 FAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNL-------SCKYKGYVNVS 295 (408)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-------~~~~~~~~~~~ 295 (408)
+.++ ..+..+....++..++..+.+|.+..+....-.. +..+.-. ...
T Consensus 147 L~~~------------------------d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~-~~d 201 (312)
T 1suu_A 147 LNDK------------------------DFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLK-EGD 201 (312)
T ss_dssp CCTT------------------------CCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCC-TTC
T ss_pred cCCC------------------------CEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeC-CCC
Confidence 2221 1122222222345577778888888887654111 1111111 122
Q ss_pred ceeEEEEcCCCCEEEEecCCceEEEeeccc
Q psy988 296 SQIKASFSHDGKYIVSGSENQCIYIWKTHH 325 (408)
Q Consensus 296 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 325 (408)
.+..+..-+++..|++.+..|..+...+..
T Consensus 202 ~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 202 LFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp CEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred EEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 455555545566788888899988888765
No 361
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=82.46 E-value=21 Score=29.93 Aligned_cols=109 Identities=8% Similarity=0.003 Sum_probs=63.2
Q ss_pred ecCCCEEEEEecCCEEEEEeccCCee-------eEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccC
Q psy988 76 CENGKFAVVGSYDGRCIFYTTDQLKY-------HTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRD 148 (408)
Q Consensus 76 ~~~~~~l~~~~~dg~i~iw~~~~~~~-------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 148 (408)
-|+..++++.+.+|.|+--.+...+. ...... .....+..+........++..+..|.++-+....
T Consensus 4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~l-------ke~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~e 76 (370)
T 3l6v_A 4 IAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAAST-------KEEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQ 76 (370)
T ss_dssp CCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEEC-------SCCCCEEEEEEECTTCEEEEEETTSEEEEEEGGG
T ss_pred ccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceeccc-------CCCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHH
Confidence 46778899999999999876543221 111111 1124566666566667788788888877665432
Q ss_pred ---------cccceeecCccccccceEEEEe---cCCCEEEEeecCceEEEeeec
Q psy988 149 ---------LNLSCKYKGYVNVSSQIKASFS---HDGKYIVSGSENQCIYIWKTH 191 (408)
Q Consensus 149 ---------~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~dg~i~i~d~~ 191 (408)
|..+..+........+.++..- .++.+|+.++..|.++...+.
T Consensus 77 ip~~~r~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~ 131 (370)
T 3l6v_A 77 LPEAGSNARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLS 131 (370)
T ss_dssp SCBCCTTSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGG
T ss_pred CcCCCcccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHH
Confidence 2221111111122334444332 245689999999999887764
No 362
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=80.39 E-value=25 Score=29.61 Aligned_cols=109 Identities=8% Similarity=0.013 Sum_probs=55.3
Q ss_pred CCCEEEEEecCCEEEEEeccCCee------eEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCccc
Q psy988 78 NGKFAVVGSYDGRCIFYTTDQLKY------HTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNL 151 (408)
Q Consensus 78 ~~~~l~~~~~dg~i~iw~~~~~~~------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 151 (408)
.....+....||.|..|-....-. ............ ....+..++++......++-..+|.|+.|-......
T Consensus 61 G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~--~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~Gq 138 (389)
T 3kci_A 61 GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESI--QHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGK 138 (389)
T ss_dssp ETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGG--TTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGT
T ss_pred CCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccc--cCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCc
Confidence 344556667889999986432110 000111111111 112445566666666777778899999996543111
Q ss_pred c-----------eeecCccccccceEEEEecCCCEEEEeecCceEEEeeec
Q psy988 152 S-----------CKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTH 191 (408)
Q Consensus 152 ~-----------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 191 (408)
+ ..+.. .....+..+ +....+.++...+|.|+.|-..
T Consensus 139 LG~g~~~~~~~p~~v~~-l~~~~i~~v--a~G~~hs~alt~~G~v~~wG~n 186 (389)
T 3kci_A 139 LGHGNRSPCDRPRVIES-LRGIEVVDV--AAGGAHSACVTAAGDLYTWGKG 186 (389)
T ss_dssp TCSSSCCCEEEEEECGG-GTTSCEEEE--EECSSEEEEEETTSCEEEEECC
T ss_pred CCCCCCccCcCCeEecc-cCCCeEEEE--EeCcCeEEEEeCCCeEEEeCCC
Confidence 1 01111 111123333 3344556666788999999653
No 363
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=79.36 E-value=52 Score=32.63 Aligned_cols=38 Identities=13% Similarity=0.149 Sum_probs=31.9
Q ss_pred eeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEe
Q psy988 252 KISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYK 289 (408)
Q Consensus 252 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 289 (408)
.+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 44555667788999999999999999999999888765
No 364
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=79.35 E-value=24 Score=28.65 Aligned_cols=115 Identities=10% Similarity=-0.015 Sum_probs=57.0
Q ss_pred cCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccC--------
Q psy988 77 ENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRD-------- 148 (408)
Q Consensus 77 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-------- 148 (408)
|+...+++.+.+|.|+--.+...+...................+..+........++..+..|.++-+....
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a 80 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGA 80 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC--------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCC
Confidence 355678888999999887766543211100000000001123454555555566777788888877665532
Q ss_pred -cccceeecCccccccceEEEEe---cCCCEEEEeecCceEEEeeec
Q psy988 149 -LNLSCKYKGYVNVSSQIKASFS---HDGKYIVSGSENQCIYIWKTH 191 (408)
Q Consensus 149 -~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~dg~i~i~d~~ 191 (408)
|..+..+........+..+..- .++.+++..+.+|.++--.+.
T Consensus 81 ~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~ 127 (307)
T 1zi0_A 81 RGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLT 127 (307)
T ss_dssp CCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGG
T ss_pred CCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHH
Confidence 2211111111122234444322 345678888899988877653
No 365
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=79.09 E-value=22 Score=28.23 Aligned_cols=163 Identities=9% Similarity=0.075 Sum_probs=90.2
Q ss_pred CCceEEEEEcCC-CCCEEEEEeCCCcEEEEecCCCC----ceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEec
Q psy988 22 IDFVTAICFHPR-DDRYFLSGSLDGKLRLWNIPDKK----VAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTT 96 (408)
Q Consensus 22 ~~~v~~~~~sp~-~~~~l~t~~~dg~i~iw~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~ 96 (408)
.+.|.++.. ++ ++.+++..+.+|.++-..+..-. -.....+... ..+..+........++..+..|.+..+..
T Consensus 67 ~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lkeg-D~l~~~~~~~~~~~ill~T~~G~~~r~~~ 144 (276)
T 3no0_A 67 EEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTEG-DEVVSIASSVDETHILLFTKKGRVARFSV 144 (276)
T ss_dssp TCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCCTT-CCEEEEEECCSSCEEEEEETTSEEEEEEG
T ss_pred CCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecCCC-CEEEEEEEeCCCCEEEEEECCCEEEEEEh
Confidence 455666543 31 35689999999999998876532 1111223332 34555555555667888899999988876
Q ss_pred cCCeeeEE--EEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCccc-------ceeecCccccccceEE
Q psy988 97 DQLKYHTQ--IHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNL-------SCKYKGYVNVSSQIKA 167 (408)
Q Consensus 97 ~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-------~~~~~~~~~~~~~~~~ 167 (408)
..-..... .-..... ......|..+...+++..++..+..|.++...+..-.. ...+ .....+..+
T Consensus 145 ~eip~~gR~a~Gv~~i~--L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i---~~~~~lv~~ 219 (276)
T 3no0_A 145 REVPPSTPGARGVQGIK--LEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS---GTKDTLVDL 219 (276)
T ss_dssp GGSCBCCTTCCCEECCC--CCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC---CSSSCEEEE
T ss_pred hhCCCcCCCCCCEEEEc--cCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE---cCCCcEEEE
Confidence 54221100 0000000 11124566666556677888999999999888754221 1112 111223333
Q ss_pred EEecCCCEEEEeecCceEEE--eeec
Q psy988 168 SFSHDGKYIVSGSENQCIYI--WKTH 191 (408)
Q Consensus 168 ~~~~~~~~l~~~~~dg~i~i--~d~~ 191 (408)
....+...++..+.+|.+.. ++..
T Consensus 220 ~~~~~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 220 IPIKEEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp EEESSEEEEEEEETTSCEEEEEEEGG
T ss_pred EEeCCCCEEEEEcCCCeEEEeeeCHH
Confidence 33333445666667777666 6653
No 366
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=77.24 E-value=6.8 Score=38.78 Aligned_cols=38 Identities=13% Similarity=0.149 Sum_probs=31.0
Q ss_pred CeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeec
Q psy988 119 KISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYK 156 (408)
Q Consensus 119 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 156 (408)
.+.+++..++..++++-+.|+.+|+|++.+++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 45556666788899999999999999999998877643
No 367
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=76.84 E-value=33 Score=28.92 Aligned_cols=161 Identities=10% Similarity=0.080 Sum_probs=80.0
Q ss_pred ceEEEEEcCCCCCEEEEEeCCCcEEEEecCCC-C--------ceeeeeecC-CceeeEEEEEecCCCEEEEEecCCEEEE
Q psy988 24 FVTAICFHPRDDRYFLSGSLDGKLRLWNIPDK-K--------VAVWNEVEG-QTKLITAANFCENGKFAVVGSYDGRCIF 93 (408)
Q Consensus 24 ~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~-~--------~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i 93 (408)
.|..++. .....+.-..||.|..|-.... + ......+.. ....+..++.+.-..+.+....||.|..
T Consensus 54 ~i~~i~~---G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~ 130 (389)
T 3kci_A 54 RPVQLIG---GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYS 130 (389)
T ss_dssp CEEEEEE---ETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEE
T ss_pred ceEEEEe---CCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEE
Confidence 3445543 4455566667899999964321 1 011111111 1223455566666667777788999999
Q ss_pred EeccCCe------eeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccc----------eeecC
Q psy988 94 YTTDQLK------YHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLS----------CKYKG 157 (408)
Q Consensus 94 w~~~~~~------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----------~~~~~ 157 (408)
|-..... ............. ....|..++.- ....++-..+|.|+.|-....-.+ .....
T Consensus 131 wG~n~~GqLG~g~~~~~~~p~~v~~l--~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~ 206 (389)
T 3kci_A 131 WGEAEDGKLGHGNRSPCDRPRVIESL--RGIEVVDVAAG--GAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVE 206 (389)
T ss_dssp EECCGGGTTCSSSCCCEEEEEECGGG--TTSCEEEEEEC--SSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECG
T ss_pred EeCCCCCcCCCCCCccCcCCeEeccc--CCCeEEEEEeC--cCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEec
Confidence 9643211 0011111111111 11245555543 445566677899999965431110 00001
Q ss_pred ccccccceEEEEecCCCEEEEeecCceEEEeeec
Q psy988 158 YVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTH 191 (408)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 191 (408)
......+..++......+.++-..+|.|+.|-..
T Consensus 207 ~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n 240 (389)
T 3kci_A 207 ALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDG 240 (389)
T ss_dssp GGTTSCEEEEEECCSSCEEEEEETTTEEEEEECC
T ss_pred ccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCC
Confidence 1111224444433323556666788999999643
No 368
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=76.39 E-value=30 Score=28.28 Aligned_cols=154 Identities=7% Similarity=0.066 Sum_probs=83.4
Q ss_pred CCCEEEEEeCCCcEEEEecCCC---CceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeE----EEE
Q psy988 34 DDRYFLSGSLDGKLRLWNIPDK---KVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHT----QIH 106 (408)
Q Consensus 34 ~~~~l~t~~~dg~i~iw~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~----~~~ 106 (408)
+..++++.+.+|.|+--.+..- .... ..+... ..+..+......+.|+..+..|.+.-+....-.... ..+
T Consensus 4 ~e~~~v~lT~~G~IKr~~~~~~~~~~~~~-~~lke~-D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~ 81 (323)
T 1wp5_A 4 SEDVIVTVTKDGYVKRTSLRSYAASNGQD-FAMKDT-DRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH 81 (323)
T ss_dssp CCEEEEEEETTCEEEEEEHHHHHHTTTCC-CCCCTT-CCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred CCcEEEEEeCCCEEEEeEHHHhhhcCccc-cccCCC-CEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcC
Confidence 6778899999999987765421 1100 123333 334444445556677778888887766654311100 000
Q ss_pred EeeccccccCCCCeEEEeeCC---CCCeEEEeeCCCeEEEEEccCcccc------eeecCccccccceEEEEecCCCEEE
Q psy988 107 VRSTRGKNATGRKISGIEPMP---GEDKILVTSNDSRIRLYDLRDLNLS------CKYKGYVNVSSQIKASFSHDGKYIV 177 (408)
Q Consensus 107 ~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~ 177 (408)
....-. ......|..+...+ ++.+++.++.+|.++-..+..-... ..+..... ..+..+........++
T Consensus 82 i~~~i~-L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~-d~lv~~~~~~~~~~i~ 159 (323)
T 1wp5_A 82 IANIIP-IDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKND-DQVVDVHLTDGMNELF 159 (323)
T ss_dssp GGGTSC-CCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTT-CCEEEEEEECSCSEEE
T ss_pred hhhccC-CCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCC-CEEEEEEEeCCCCEEE
Confidence 001100 11223455543333 2567999999999999887532221 11111112 3344444444556777
Q ss_pred EeecCceEEEeeec
Q psy988 178 SGSENQCIYIWKTH 191 (408)
Q Consensus 178 ~~~~dg~i~i~d~~ 191 (408)
..+.+|.+..++..
T Consensus 160 l~T~~G~~irf~~~ 173 (323)
T 1wp5_A 160 LVTHNGYALWFDES 173 (323)
T ss_dssp EEETTSEEEEEEGG
T ss_pred EEeCCCcEEEEEHH
Confidence 88888888877764
No 369
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=75.86 E-value=13 Score=33.36 Aligned_cols=60 Identities=18% Similarity=0.132 Sum_probs=43.0
Q ss_pred eeeeeccCCCCCeEEEecCC------------CeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEe
Q psy988 252 KISGIEPMPGEDKILVTSND------------SRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSG 312 (408)
Q Consensus 252 ~i~~~~~~~~~~~l~~~~~d------------~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 312 (408)
.+-.|+|+|.|++++.-..+ ..+.+.+..+++..+.+.++. ...++.++|+||++.|++.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~-gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPI-GCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCT-TCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCC-CccCcCeeECCCCCEEEEE
Confidence 45668899999876664322 346677777787776666653 4578899999999988764
No 370
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=75.68 E-value=54 Score=30.89 Aligned_cols=156 Identities=12% Similarity=0.111 Sum_probs=74.6
Q ss_pred CCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecC-------CceeeEEEEEecC-CCEEEEEecCCE---
Q psy988 22 IDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEG-------QTKLITAANFCEN-GKFAVVGSYDGR--- 90 (408)
Q Consensus 22 ~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~-------~~~~v~~~~~~~~-~~~l~~~~~dg~--- 90 (408)
.+.|.+|+++|.+...++.++..+.|...+=...... .+.. ....+.++++.|. ...++.+..+..
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~DgG~tW~---~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~ 90 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWI---PLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDE 90 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEE---ESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSS
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEecCCCCCee---ECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCc
Confidence 4689999999966677777877777766553222222 2222 1246999999884 344444433211
Q ss_pred -EEEEe-ccCCeeeEEEEEeecccc-ccCCCCeEEEeeCCCC-CeEEEeeCCCeEEEEEccC-cccceeecCc----ccc
Q psy988 91 -CIFYT-TDQLKYHTQIHVRSTRGK-NATGRKISGIEPMPGE-DKILVTSNDSRIRLYDLRD-LNLSCKYKGY----VNV 161 (408)
Q Consensus 91 -i~iw~-~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~----~~~ 161 (408)
-.||. .+.++.-........... ......+..++++|.. +.++++...+.| |-... ++.-..+... ...
T Consensus 91 ~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl--~~S~DgG~TW~~~~~~~~~~~~~ 168 (789)
T 1sqj_A 91 WAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGI--WKSSDRAKTWTNVTSIPDAFTNG 168 (789)
T ss_dssp CCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCE--EEESSTTSSCEEETTSCCCCSTT
T ss_pred ccEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCE--EEECCCCcccCCCccCccccCCC
Confidence 23333 333332222221100000 0001134567777753 455555534433 33222 2221222110 011
Q ss_pred ccceEEEEecC-CCEEEEeecC
Q psy988 162 SSQIKASFSHD-GKYIVSGSEN 182 (408)
Q Consensus 162 ~~~~~~~~~~~-~~~l~~~~~d 182 (408)
..+..+.++|. +..++++..+
T Consensus 169 ~~~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 169 IGYTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp TCEEEEEECTTSTTCEEEEESS
T ss_pred CCeEEEEECCCCCCEEEEEEcC
Confidence 23556778774 4456666544
No 371
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=74.59 E-value=33 Score=27.87 Aligned_cols=155 Identities=12% Similarity=0.124 Sum_probs=84.5
Q ss_pred CCCEEEEEeCCCcEEEEecCCCCce-------eeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEE
Q psy988 34 DDRYFLSGSLDGKLRLWNIPDKKVA-------VWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIH 106 (408)
Q Consensus 34 ~~~~l~t~~~dg~i~iw~~~~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 106 (408)
+..++++.+.+|.|+--.+..-... ....+... ..+..+......+.++..+..|.++-+....-.......
T Consensus 7 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~-D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~ 85 (312)
T 1suu_A 7 KENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDG-DEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRAS 85 (312)
T ss_dssp -CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTT-CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-----
T ss_pred CCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCC-CEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccC
Confidence 6778999999999998876543211 00122332 334444455556678888889988877665321110000
Q ss_pred E--e--eccccccCCCCeEEEeeCC---CCCeEEEeeCCCeEEEEEccCcccc-----eeecCccccccceEEEEecCCC
Q psy988 107 V--R--STRGKNATGRKISGIEPMP---GEDKILVTSNDSRIRLYDLRDLNLS-----CKYKGYVNVSSQIKASFSHDGK 174 (408)
Q Consensus 107 ~--~--~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 174 (408)
. + .... ......|..+...+ ++.+++..+..|.++...+...... ..+.... ...+..+....++.
T Consensus 86 ~G~~i~~~l~-l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~~ 163 (312)
T 1suu_A 86 KGQNISELIN-LGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKDE 163 (312)
T ss_dssp --CBGGGTSC-CCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTTC
T ss_pred CCcChhhccC-CCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCCC
Confidence 0 0 0000 11223455554332 4667888899999999887543211 1111111 23344444444556
Q ss_pred EEEEeecCceEEEeeec
Q psy988 175 YIVSGSENQCIYIWKTH 191 (408)
Q Consensus 175 ~l~~~~~dg~i~i~d~~ 191 (408)
.++..+.+|.+..+...
T Consensus 164 ~i~l~T~~G~~~r~~~~ 180 (312)
T 1suu_A 164 KVICLSKKGSAFIFNSR 180 (312)
T ss_dssp EEEEEETTSEEEEEEGG
T ss_pred EEEEEeCCCcEEEEEHH
Confidence 78888888988888764
No 372
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=70.83 E-value=38 Score=26.92 Aligned_cols=113 Identities=12% Similarity=0.004 Sum_probs=64.1
Q ss_pred eeeEEEEEecCCCEEEEEecCCEEEEEe---ccCCeeeEEEEEeeccccccCCCCeEEEeeCC--CCCeEEEeeCCCeEE
Q psy988 68 KLITAANFCENGKFAVVGSYDGRCIFYT---TDQLKYHTQIHVRSTRGKNATGRKISGIEPMP--GEDKILVTSNDSRIR 142 (408)
Q Consensus 68 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~ 142 (408)
..+..+.-....++|+.-+.+|.++--. +....... . ......|..+.. + ++..++..+.+|.++
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~------l---l~~~e~i~~v~~-~~~~~~~~v~~T~~G~iK 93 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVS------L---KSREEKIVGAFI-REKFGNRLLLATKKGYVK 93 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECC------C---SSTTCCEEEEEE-GGGSCSEEEEEETTSEEE
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccc------c---CCCCCEEEEEEC-CcCCCCEEEEEeCCCEEE
Confidence 3455555455556677777888776543 33221111 1 112345666644 3 467899999999999
Q ss_pred EEEccCcc----cceeecCccccccceEEEEecCCCEEEEeecCceEEEeeec
Q psy988 143 LYDLRDLN----LSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTH 191 (408)
Q Consensus 143 i~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 191 (408)
-..+..-. -...+... ....+..+........++..+..|.++.++..
T Consensus 94 r~~l~~~~~~~~G~~~i~lk-egD~l~~~~~~~~~~~ill~T~~G~~~r~~~~ 145 (276)
T 3no0_A 94 KIPLAEFEYKAQGMPIIKLT-EGDEVVSIASSVDETHILLFTKKGRVARFSVR 145 (276)
T ss_dssp EEEGGGTTTCSTTEECSCCC-TTCCEEEEEECCSSCEEEEEETTSEEEEEEGG
T ss_pred EEEHHHhhhhcCCeEEEecC-CCCEEEEEEEeCCCCEEEEEECCCEEEEEEhh
Confidence 99876542 00111111 11234444444455678888888988877653
No 373
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=70.81 E-value=22 Score=31.71 Aligned_cols=61 Identities=16% Similarity=0.117 Sum_probs=41.7
Q ss_pred ceeeeeccCCCCCeEEEecC------------CCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEe
Q psy988 251 RKISGIEPMPGEDKILVTSN------------DSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSG 312 (408)
Q Consensus 251 ~~i~~~~~~~~~~~l~~~~~------------d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 312 (408)
..+..|.|.++|.+.+.... ...+..++..++++...+.... ...++.++|+||++.|++.
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~-~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPI-GCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCT-TCEEEEEEECTTSSEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCC-CccccCCEECCCCCEEEEE
Confidence 45677889999887773321 2257777777777665554322 2357889999999988875
No 374
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=70.00 E-value=44 Score=27.32 Aligned_cols=110 Identities=11% Similarity=0.000 Sum_probs=60.2
Q ss_pred cCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccC--------
Q psy988 77 ENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRD-------- 148 (408)
Q Consensus 77 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-------- 148 (408)
|+...+++.+.+|.|+--.+...+.... ... .......+..+........++..+..|.++-+....
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~----~~~-~lke~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a 77 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNG----QDF-AMKDTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKD 77 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTT----CCC-CCCTTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTS
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCc----ccc-ccCCCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCC
Confidence 5667788999999998776553221000 000 011223455555555667788888888877665532
Q ss_pred -cccceeecCccccccceEEEEec---CCCEEEEeecCceEEEeeec
Q psy988 149 -LNLSCKYKGYVNVSSQIKASFSH---DGKYIVSGSENQCIYIWKTH 191 (408)
Q Consensus 149 -~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~dg~i~i~d~~ 191 (408)
|.++..+-.......+..+..-+ ++.+++..+.+|.++-..+.
T Consensus 78 ~G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~ 124 (323)
T 1wp5_A 78 LGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELK 124 (323)
T ss_dssp CCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGG
T ss_pred CCcChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHH
Confidence 22111111111222344332222 25678888999999887764
No 375
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=68.57 E-value=27 Score=32.19 Aligned_cols=71 Identities=13% Similarity=0.151 Sum_probs=0.0
Q ss_pred eEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCc-----------eeeEEEEEecCCCEEEEEe--cCCEE
Q psy988 25 VTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQT-----------KLITAANFCENGKFAVVGS--YDGRC 91 (408)
Q Consensus 25 v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~-----------~~v~~~~~~~~~~~l~~~~--~dg~i 91 (408)
|.++.+ +..++++-+.|.++|+|++.++++.....+.... .+-.-+.... .++++-+ ..|..
T Consensus 224 Is~~~~---~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL~~~~~~~~s~L~~~~~~~~~Lrl~~--~~lv~y~P~~~G~F 298 (729)
T 3f7f_A 224 ISCKLF---HERYLIVLTQNCHLKIWDLTSFTLIQDYDMVSQSDSDPSHFRKVEAVGEYLSLYN--NTLVTLLPLENGLF 298 (729)
T ss_dssp EEEEEE---TTTEEEEEETTCEEEEEETTTTEEEEEEETTTTSCCCSSCCCCCCSCCCCEEESS--SEEEEEETTTTCEE
T ss_pred EEEecc---CCcEEEEEEcCCeEEEEEcCCCceEEeeccccCccccccccCcccCcchhHhhee--eEEEEEecCCCCeE
Q ss_pred EEEeccCCe
Q psy988 92 IFYTTDQLK 100 (408)
Q Consensus 92 ~iw~~~~~~ 100 (408)
++|.+....
T Consensus 299 k~~~l~~~~ 307 (729)
T 3f7f_A 299 QMGTLLVDS 307 (729)
T ss_dssp EEEEEEC--
T ss_pred EEEEEEEcC
No 376
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=63.52 E-value=22 Score=32.02 Aligned_cols=60 Identities=18% Similarity=0.132 Sum_probs=41.2
Q ss_pred CeEEEeeCCCCCeEEEeeCC------------CeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEe
Q psy988 119 KISGIEPMPGEDKILVTSND------------SRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSG 179 (408)
Q Consensus 119 ~v~~~~~~~~~~~l~~~~~d------------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 179 (408)
..-.|+|+|.|++++.-..+ ..+.+.+..+++..+.+..+. ...++.++|+||++.|++.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~-gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPI-GCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCT-TCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCC-CccCcCeeECCCCCEEEEE
Confidence 45678999999865554321 345666777777665555543 3568889999999888765
No 377
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=60.42 E-value=39 Score=30.22 Aligned_cols=62 Identities=16% Similarity=0.106 Sum_probs=41.6
Q ss_pred CCeEEEeeCCCCCeEEEeeC------------CCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEee
Q psy988 118 RKISGIEPMPGEDKILVTSN------------DSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS 180 (408)
Q Consensus 118 ~~v~~~~~~~~~~~l~~~~~------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 180 (408)
.....+.|.++|.+.+.... ...+..++..+++....+.... ...++.++|+||++.|++.-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~-~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPI-GCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCT-TCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCC-CccccCCEECCCCCEEEEEE
Confidence 45678999999876664321 1257777777777655443322 23467899999999888764
No 378
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=56.94 E-value=1.2e+02 Score=28.07 Aligned_cols=34 Identities=18% Similarity=0.316 Sum_probs=24.4
Q ss_pred eEEEe-eCCCCCeEEEe-eC----CCeEEEEEccCcccce
Q psy988 120 ISGIE-PMPGEDKILVT-SN----DSRIRLYDLRDLNLSC 153 (408)
Q Consensus 120 v~~~~-~~~~~~~l~~~-~~----dg~i~i~d~~~~~~~~ 153 (408)
...+. ++|++++++.+ +. -..++++|+.+++.+.
T Consensus 131 ~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~ 170 (711)
T 4hvt_A 131 YRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVK 170 (711)
T ss_dssp EEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECT
T ss_pred EeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCC
Confidence 44455 88999988776 32 2369999999987653
No 379
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=53.15 E-value=1e+02 Score=25.83 Aligned_cols=158 Identities=6% Similarity=0.075 Sum_probs=86.4
Q ss_pred EcCCCCCEEEEEeCCCcEEEEecCC-------CCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeee
Q psy988 30 FHPRDDRYFLSGSLDGKLRLWNIPD-------KKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYH 102 (408)
Q Consensus 30 ~sp~~~~~l~t~~~dg~i~iw~~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~ 102 (408)
+-| +..++++.+.+|.|+--.+.. +.-..-..++. ...+..+........|+..+..|.+.-+....-...
T Consensus 3 lI~-~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke-~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~ 80 (370)
T 3l6v_A 3 LIA-PEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKE-EDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEA 80 (370)
T ss_dssp CCC-CCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSC-CCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBC
T ss_pred ccc-CCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCC-CCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCC
Confidence 346 788999999999999765532 11111123333 344555555555667777788888776654321110
Q ss_pred ----EEEEEeeccccccCCCCeEEEeeC---CCCCeEEEeeCCCeEEEEEccCcccc-----eeecCccccccceEEEEe
Q psy988 103 ----TQIHVRSTRGKNATGRKISGIEPM---PGEDKILVTSNDSRIRLYDLRDLNLS-----CKYKGYVNVSSQIKASFS 170 (408)
Q Consensus 103 ----~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~l~~~~~dg~i~i~d~~~~~~~-----~~~~~~~~~~~~~~~~~~ 170 (408)
........... .....|.++... .++.+|+.++..|.++-..+...... ..+.... ...+..+...
T Consensus 81 ~r~a~G~~i~~ll~L-~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~~ 158 (370)
T 3l6v_A 81 GSNARGRPIINWIPL-ESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVALT 158 (370)
T ss_dssp CTTSCCEEGGGSCCC-CTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEEE
T ss_pred CcccCCcCHhhccCC-CCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEEe
Confidence 00000000001 123455555433 24568999999999999887543221 1111111 2234444444
Q ss_pred cCCCEEEEeecCceEEEeeec
Q psy988 171 HDGKYIVSGSENQCIYIWKTH 191 (408)
Q Consensus 171 ~~~~~l~~~~~dg~i~i~d~~ 191 (408)
.....++..+.+|.+..++..
T Consensus 159 ~~~~~i~l~T~~G~~irf~~~ 179 (370)
T 3l6v_A 159 DGDRDVLLFASNGKTVRFGES 179 (370)
T ss_dssp CSCCEEEEEETTSEEEEEEGG
T ss_pred CCCceEEEEeCCCeEEEEEcc
Confidence 555677778888887777653
No 380
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=50.71 E-value=1.6e+02 Score=27.40 Aligned_cols=245 Identities=9% Similarity=0.026 Sum_probs=112.1
Q ss_pred eeEEEE-EecCCCEEEEEec-C----CEEEEEeccCCeeeEEEEEeeccccccCC-----CCeEEEeeCCCCCeEEEee-
Q psy988 69 LITAAN-FCENGKFAVVGSY-D----GRCIFYTTDQLKYHTQIHVRSTRGKNATG-----RKISGIEPMPGEDKILVTS- 136 (408)
Q Consensus 69 ~v~~~~-~~~~~~~l~~~~~-d----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~- 136 (408)
....+. ++|++++++.+-. . ..++++|+.+++..... +. ..... .....++|. +++.++.+.
T Consensus 130 ~~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~----~~-~~~k~~~~~~~~~~~~~W~-d~~~~~~~~~ 203 (711)
T 4hvt_A 130 AYRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNG----FE-PITNSGKLLEGKFTYPTWI-NKDTIIFNLV 203 (711)
T ss_dssp EEEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTC----SC-CBCTTCCBCCEETCCEEEE-ETTEEEECCC
T ss_pred EEeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCC----cc-cccccccccccccceeeEE-CCCEEEEEeC
Confidence 344555 8899888765432 2 37999999998764211 00 00000 011334665 344444432
Q ss_pred ----------CCCeEEEEEccCcccc--eeecCccccccceEEEEecCCCE-----EEEee---cCceEEEeeeccceee
Q psy988 137 ----------NDSRIRLYDLRDLNLS--CKYKGYVNVSSQIKASFSHDGKY-----IVSGS---ENQCIYIWKTHHDYAK 196 (408)
Q Consensus 137 ----------~dg~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-----l~~~~---~dg~i~i~d~~~~~~~ 196 (408)
....|+.|.+-+.... ..+....... ......++++++ +++.+ ....+++.+.......
T Consensus 204 ~~~~~~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 282 (711)
T 4hvt_A 204 LHKNEITSSLYPNSLYIWKRGESIEKAKKLFEVPKEYI-YVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLK 282 (711)
T ss_dssp CSTTCBCTTSSBCEEEEEETTSCGGGCEEEEECCTTSC-EEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCE
T ss_pred CCCCCcCcCCCCCEEEEEECCCChHHCeEEeccCCCce-EEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCc
Confidence 1246888877654322 2333333322 223455666663 33332 1245666665432221
Q ss_pred eeecccCCCccccccccccceEEE-E--EE------eCCcceeeeecCCCCC-----CCce-eeecCCCceeeeeccCCC
Q psy988 197 FSSVRRDRNDFWEGIKAHNAVVTC-A--VF------APCPELIIAQMEPDKS-----ESTG-YVLNATGRKISGIEPMPG 261 (408)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~v~~-~--~~------~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~i~~~~~~~~ 261 (408)
...+..+..... ...+.+...- . .| .|.++.+++....... .... .+.......+..+.+..+
T Consensus 283 ~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 360 (711)
T 4hvt_A 283 LQKINMPSDATL--QGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD 360 (711)
T ss_dssp EEECCSCTTCEE--EEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS
T ss_pred ceEeecCCcceE--eeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC
Confidence 111111111000 0011111100 0 01 2445555444333211 1122 233445667888888876
Q ss_pred CCeEEEecCCC--eEEEEEcCCCe-eeeE-EeeccceeceeEEEEcCCCCEEE-Eec---CCceEEEeecc
Q psy988 262 EDKILVTSNDS--RIRLYDLRDLN-LSCK-YKGYVNVSSQIKASFSHDGKYIV-SGS---ENQCIYIWKTH 324 (408)
Q Consensus 262 ~~~l~~~~~d~--~i~i~d~~~~~-~~~~-~~~~~~~~~v~~~~~s~~~~~l~-~~~---~dg~i~iw~~~ 324 (408)
..+++...++ .+.++|+.+++ .... +.... ...+.....++++..++ +.+ .-+.+..+|+.
T Consensus 361 -~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~-~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 361 -RVFLATYDNVVAKVVTFTLENEQWTKPVVLKLPY-QNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp -CEEEEEEETTEEEEEEECEETTEECCCEEECCCS-TTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred -EEEEEEEECCEEEEEEEECCCCceEEEeccCCCC-CeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 5566666665 46777776664 2233 32211 12344456667765443 332 23577777765
No 381
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=49.01 E-value=68 Score=28.54 Aligned_cols=69 Identities=13% Similarity=0.178 Sum_probs=42.4
Q ss_pred eeeeeccCC--CCCeEEEecCCCeEEEEEcCCC----eeeeEEeeccceecee-EEEEcCCCCEEEEecCCceEEE
Q psy988 252 KISGIEPMP--GEDKILVTSNDSRIRLYDLRDL----NLSCKYKGYVNVSSQI-KASFSHDGKYIVSGSENQCIYI 320 (408)
Q Consensus 252 ~i~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~----~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~dg~i~i 320 (408)
..++++... +...+..|+.+|.|.-..+... .....+.......+|. .+.+++++.+|++++..+.++|
T Consensus 401 ~lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 401 RLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred ceEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEecccccee
Confidence 455555443 3345667889998766555422 1223333322234664 7899999999999988765554
No 382
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=43.63 E-value=88 Score=28.70 Aligned_cols=57 Identities=7% Similarity=0.091 Sum_probs=36.0
Q ss_pred eEEEecCCCeEE-EEEcCCCe-------eeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEE
Q psy988 264 KILVTSNDSRIR-LYDLRDLN-------LSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYI 320 (408)
Q Consensus 264 ~l~~~~~d~~i~-i~d~~~~~-------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 320 (408)
.++.|+.+|.|. +.-..... .+..+.......+|..+.++++.++|.+++.++.++|
T Consensus 431 VlFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v~~~~~pI~~L~ld~~~~~LYV~t~~~V~kV 495 (667)
T 4gz8_A 431 VMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 495 (667)
T ss_dssp EEEEEETTSEEEEEEEEC------CEEEEEEEEECSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEECCCCeEEEEEEcCCCCccccceEEEEEEeecCCCceeeeEEEcCCCCEEEEEECCEEEEE
Confidence 456678888764 33222211 2223333344557889999999999999998876655
No 383
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=43.12 E-value=80 Score=27.73 Aligned_cols=57 Identities=7% Similarity=0.019 Sum_probs=35.5
Q ss_pred eEEEecCCCeEEEEEcC-CCe-------eeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEE
Q psy988 264 KILVTSNDSRIRLYDLR-DLN-------LSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYI 320 (408)
Q Consensus 264 ~l~~~~~d~~i~i~d~~-~~~-------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 320 (408)
.+..|+.+|.|.-.-+. .+. .+..+.......+|..+.++++..+|.+++.++.++|
T Consensus 423 V~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V~~v 487 (495)
T 1q47_A 423 VMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 487 (495)
T ss_dssp EEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeEEEE
Confidence 45667888876544332 211 2223333223457889999999999999998876554
No 384
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=40.63 E-value=2.3e+02 Score=26.41 Aligned_cols=111 Identities=6% Similarity=0.022 Sum_probs=56.4
Q ss_pred ceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCC-------ceeeEEEEEec-CCCEEEEEecC-------
Q psy988 24 FVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQ-------TKLITAANFCE-NGKFAVVGSYD------- 88 (408)
Q Consensus 24 ~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~-------~~~v~~~~~~~-~~~~l~~~~~d------- 88 (408)
.|..|+++|.+...+..+...+.|...+-...... .+..+ ...|.++++.| +.+.++.+...
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~ggv~rS~D~G~tW~---~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~ 100 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAIGGAYRWDPSTETWI---PLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLP 100 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSSSCEEEEETTTTEEE---ECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSC
T ss_pred eeeEEEECCCCCCEEEEEecCCcEEEeCCCCCCEE---ECcCccCcccccCCCcceEEeCCCCCCEEEEEeccccccccc
Confidence 89999999965566777776676666653333222 22221 24589999998 33444444321
Q ss_pred CEEEEEeccC-CeeeEEEEEeecccc-ccCCCCeEEEeeCCCC-CeEEEeeC
Q psy988 89 GRCIFYTTDQ-LKYHTQIHVRSTRGK-NATGRKISGIEPMPGE-DKILVTSN 137 (408)
Q Consensus 89 g~i~iw~~~~-~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~-~~l~~~~~ 137 (408)
+...||.... ++.-........... ......+..++++|.. +.++++..
T Consensus 101 ~~~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~ 152 (737)
T 2cn3_A 101 NMGAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTR 152 (737)
T ss_dssp CCCEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECS
T ss_pred CCccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeec
Confidence 1244554433 332222221110000 0001134678888854 56666653
No 385
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D*
Probab=40.38 E-value=73 Score=20.61 Aligned_cols=25 Identities=28% Similarity=0.631 Sum_probs=15.5
Q ss_pred EEEEcCCCCEEEEecCCceEEEeeccc
Q psy988 299 KASFSHDGKYIVSGSENQCIYIWKTHH 325 (408)
Q Consensus 299 ~~~~s~~~~~l~~~~~dg~i~iw~~~~ 325 (408)
.+.+..||++++.-. ++. .+|...+
T Consensus 54 ~L~l~~dGnLvL~d~-~~~-~vWss~t 78 (105)
T 4h3o_A 54 SAVLQSDGNFVVYDS-SGR-SLWASHS 78 (105)
T ss_dssp EEEECTTSCEEEECT-TCC-EEEECCC
T ss_pred EEEEeCCccEEEECC-CcE-EEEEecC
Confidence 567888888777643 232 4676543
No 386
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=38.36 E-value=1.5e+02 Score=23.52 Aligned_cols=104 Identities=9% Similarity=-0.031 Sum_probs=52.2
Q ss_pred eeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccC
Q psy988 69 LITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRD 148 (408)
Q Consensus 69 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 148 (408)
.|..++.... +.+.-. ||.+..|-........ .+ ......|..++.... ..++. . ||.|+.|-...
T Consensus 25 ~i~~ia~G~~--h~~~l~-~G~v~~wG~n~~Gqlg---~p-----~~~~~~i~~ia~G~~-hs~~l-~-~G~v~~wG~n~ 90 (282)
T 3qhy_B 25 GVDAIAGGYF--HGLALK-GGKVLGWGANLNGQLT---MP-----AATQSGVDAIAAGNY-HSLAL-K-DGEVIAWGGNE 90 (282)
T ss_dssp SCCEEEECSS--EEEEEE-TTEEEEEECCSSSTTS---CC-----GGGGSCCCEEEECSS-EEEEE-E-TTEEEEEECCT
T ss_pred CCcEEEeCCC--eEEEEE-CCEEEEEeCCCCCCCC---CC-----ccCCCCEEEEEeCCC-EEEEE-E-CCEEEEeeCCC
Confidence 4666665332 333335 8999999765432211 00 011235666665432 23333 4 89999997654
Q ss_pred cccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeec
Q psy988 149 LNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTH 191 (408)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 191 (408)
...+..... ....+..++... .+.++-. +|.|+.|-..
T Consensus 91 ~Gqlg~P~~--~~~~v~~ia~G~--~hs~al~-~G~v~~wG~n 128 (282)
T 3qhy_B 91 DGQTTVPAE--ARSGVDAIAAGA--WASYALK-DGKVIAWGDD 128 (282)
T ss_dssp TSTTCCCGG--GSSSEEEEEEET--TEEEEEE-TTEEEEEECC
T ss_pred CCCCCCCcc--cCCCeEEEECcC--CEEEEEe-CCeEEEecCC
Confidence 322211110 012344444433 3344445 8999999654
No 387
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=34.83 E-value=1.5e+02 Score=26.73 Aligned_cols=58 Identities=7% Similarity=0.054 Sum_probs=36.3
Q ss_pred CeEEEecCCCeEEEEEcCCCe----e--eeEEeeccceeceeEEEEcCCCCEEEEecCCceEEE
Q psy988 263 DKILVTSNDSRIRLYDLRDLN----L--SCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYI 320 (408)
Q Consensus 263 ~~l~~~~~d~~i~i~d~~~~~----~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 320 (408)
..+..|+.+|.|.-.-..... . +..+.......++..+.++++..+|.+++.++.+++
T Consensus 381 tVlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~~~~~~pi~~L~ls~~~~~LyV~s~~~V~qV 444 (590)
T 3nvq_A 381 HVLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPFRRAAAIQTMSLDAERRKLYVSSQWEVSQV 444 (590)
T ss_dssp EEEEEEETTSCEEEEECCCSSTTCCCEEEEEECCCSSCCCCCEEEEETTTTEEEEECSSEEEEE
T ss_pred EEEEEEcCCcEEEEEEecCCCCcceeEEEEEeeccCCCCceeeEEEcCCCCEEEEEecceEEEc
Confidence 355667888887544332211 1 122322223457788999999999999988876665
No 388
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=34.67 E-value=1.7e+02 Score=23.15 Aligned_cols=145 Identities=12% Similarity=-0.006 Sum_probs=73.1
Q ss_pred CCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCee
Q psy988 22 IDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKY 101 (408)
Q Consensus 22 ~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 101 (408)
...|..++... ...++. . ||.|..|-.......-. . ......|..++...+- .++. . ||.+..|-......
T Consensus 23 ~~~i~~ia~G~--~h~~~l-~-~G~v~~wG~n~~Gqlg~-p-~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gq 93 (282)
T 3qhy_B 23 QSGVDAIAGGY--FHGLAL-K-GGKVLGWGANLNGQLTM-P-AATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQ 93 (282)
T ss_dssp SSSCCEEEECS--SEEEEE-E-TTEEEEEECCSSSTTSC-C-GGGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTST
T ss_pred cCCCcEEEeCC--CeEEEE-E-CCEEEEEeCCCCCCCCC-C-ccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCC
Confidence 34677777754 233333 5 89999998654322210 1 1112356666654332 2333 4 89999997654322
Q ss_pred eEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeec
Q psy988 102 HTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSE 181 (408)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 181 (408)
.. .+ ......|..++.-. ...++-. +|.|+.|-......+.... .....+..++.. ..+.+.-.
T Consensus 94 lg---~P-----~~~~~~v~~ia~G~--~hs~al~-~G~v~~wG~n~~gqlg~~~--~~~~~i~~i~~G--~~~~~~l~- 157 (282)
T 3qhy_B 94 TT---VP-----AEARSGVDAIAAGA--WASYALK-DGKVIAWGDDSDGQTTVPA--EAQSGVTALDGG--VYTALAVK- 157 (282)
T ss_dssp TC---CC-----GGGSSSEEEEEEET--TEEEEEE-TTEEEEEECCTTSTTSCCG--GGGSSEEEEEEC--SSEEEEEE-
T ss_pred CC---CC-----cccCCCeEEEECcC--CEEEEEe-CCeEEEecCCCCCcCCCCc--cCCCCeEEEEcc--cCEEEEEE-
Confidence 11 00 01123576666543 3344445 8999999765432221111 111224444332 22333333
Q ss_pred CceEEEeeec
Q psy988 182 NQCIYIWKTH 191 (408)
Q Consensus 182 dg~i~i~d~~ 191 (408)
||.++.|-..
T Consensus 158 ~G~v~~wG~n 167 (282)
T 3qhy_B 158 NGGVIAWGDN 167 (282)
T ss_dssp TTEEEEEECC
T ss_pred CCEEEEecCC
Confidence 7899988654
No 389
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=30.49 E-value=1.9e+02 Score=25.42 Aligned_cols=70 Identities=14% Similarity=0.121 Sum_probs=42.0
Q ss_pred ceEEEEEcCC-----CCCEEEEEeCCCcEEEEecC-CCC-----ceeeeeec--CCceeeEEEEEecCCCEEEEEecCCE
Q psy988 24 FVTAICFHPR-----DDRYFLSGSLDGKLRLWNIP-DKK-----VAVWNEVE--GQTKLITAANFCENGKFAVVGSYDGR 90 (408)
Q Consensus 24 ~v~~~~~sp~-----~~~~l~t~~~dg~i~iw~~~-~~~-----~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~ 90 (408)
..++|+.... +-..++.|..+|.|.=.-+. .+. ...+..+. ....+|..|.++++..+|++++.++.
T Consensus 405 ~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V 484 (495)
T 1q47_A 405 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGV 484 (495)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCE
T ss_pred ceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeE
Confidence 4566665431 22456778889987544332 221 11112222 23578999999999999999988876
Q ss_pred EEE
Q psy988 91 CIF 93 (408)
Q Consensus 91 i~i 93 (408)
++|
T Consensus 485 ~~v 487 (495)
T 1q47_A 485 AQL 487 (495)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 390
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=29.64 E-value=3.6e+02 Score=25.40 Aligned_cols=62 Identities=11% Similarity=0.171 Sum_probs=34.5
Q ss_pred CCeEEEeeCCC-CCeEEEeeCCCeEEEEEccCcccceeecCcc-----ccccceEEEEecC-CCEEEEee
Q psy988 118 RKISGIEPMPG-EDKILVTSNDSRIRLYDLRDLNLSCKYKGYV-----NVSSQIKASFSHD-GKYIVSGS 180 (408)
Q Consensus 118 ~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~l~~~~ 180 (408)
..|.+++++|. ...+++++..+.|...+= .++.-..+.... ....+.+++++|. .+.++++.
T Consensus 15 g~i~~i~~~p~~~~~~~a~~~~ggv~rS~D-gG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~ 83 (789)
T 1sqj_A 15 GYITGIVAHPKTKDLLYARTDIGGAYRWDA-GTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQ 83 (789)
T ss_dssp SCEEEEEECSSSTTCEEEEESSSCEEEEET-TTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEE
T ss_pred CcEEEEEECCCCCCEEEEEecCCCEEEecC-CCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEe
Confidence 58999999986 356677776676655442 222111111111 1234778888884 34455443
No 391
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=28.26 E-value=3.8e+02 Score=25.14 Aligned_cols=65 Identities=9% Similarity=0.100 Sum_probs=37.1
Q ss_pred eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeee-ec----C----CceeeEEEEEecC-CCEEEEE
Q psy988 21 HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNE-VE----G----QTKLITAANFCEN-GKFAVVG 85 (408)
Q Consensus 21 h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~-~~----~----~~~~v~~~~~~~~-~~~l~~~ 85 (408)
-.+.|.+|.++|.+...+..+...|.|...+=.......... +. + ....+.++++.|. .+.++++
T Consensus 19 ~~g~i~~i~~~p~~~~~~y~~~~~ggv~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~ 93 (763)
T 3a0f_A 19 GGGFISGLVAHPTEKDLIYARTDIGGTYRWNAAKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLA 93 (763)
T ss_dssp BCSCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEE
T ss_pred CCCceeEEEeCCCCCCEEEEEeccCcEEEECCCCCCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEE
Confidence 457899999999666777777766765544422211121111 10 0 2245889999883 3444443
No 392
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=27.92 E-value=2.4e+02 Score=25.42 Aligned_cols=58 Identities=10% Similarity=0.009 Sum_probs=37.0
Q ss_pred CEEEEEeCCCcEEEEecCCCC----ceeeeeec--CCceeeEEEEEecCCCEEEEEecCCEEEE
Q psy988 36 RYFLSGSLDGKLRLWNIPDKK----VAVWNEVE--GQTKLITAANFCENGKFAVVGSYDGRCIF 93 (408)
Q Consensus 36 ~~l~t~~~dg~i~iw~~~~~~----~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 93 (408)
..+..|+.+|.|.-.-+.... ......+. ....+|..+.++++...|+.++.++.+++
T Consensus 381 tVlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~~~~~~pi~~L~ls~~~~~LyV~s~~~V~qV 444 (590)
T 3nvq_A 381 HVLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPFRRAAAIQTMSLDAERRKLYVSSQWEVSQV 444 (590)
T ss_dssp EEEEEEETTSCEEEEECCCSSTTCCCEEEEEECCCSSCCCCCEEEEETTTTEEEEECSSEEEEE
T ss_pred EEEEEEcCCcEEEEEEecCCCCcceeEEEEEeeccCCCCceeeEEEcCCCCEEEEEecceEEEc
Confidence 467788889987644332221 11112222 34568899999999999999887765554
No 393
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=27.83 E-value=2.2e+02 Score=22.23 Aligned_cols=150 Identities=11% Similarity=0.030 Sum_probs=79.6
Q ss_pred CEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeE--EEEEeecccc
Q psy988 36 RYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHT--QIHVRSTRGK 113 (408)
Q Consensus 36 ~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~--~~~~~~~~~~ 113 (408)
...++.+.+|.|+--......... ..+..... +..+......+.|+..+..|.+.-+....-.... .........
T Consensus 3 ~v~v~lT~~G~iKr~~~~~~~~~~-~~lke~D~-l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~- 79 (256)
T 1zvt_A 3 PVTIVLSQMGWVRSAKGHDIDAPG-LNYKAGDS-FKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLT- 79 (256)
T ss_dssp EEEEEEETTSEEEEEESSCCCSTT-SCCCTTCC-EEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCC-
T ss_pred CEEEEEeCCCEEEEeeCCcCCcee-ccCCCCCE-EEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeec-
Confidence 456667777877765543321111 12333333 3344344445567777888987776654321100 000000101
Q ss_pred ccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcc-------cceeecCccccccceEEEEe-cCCCEEEEeecCceE
Q psy988 114 NATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLN-------LSCKYKGYVNVSSQIKASFS-HDGKYIVSGSENQCI 185 (408)
Q Consensus 114 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-------~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~dg~i 185 (408)
......|.++....++.+++.++..|.++...+..-. ....+.. . ..+..+... .++..++..+.+|.+
T Consensus 80 L~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~--~-d~lv~~~~~~~~~~~i~l~T~~G~~ 156 (256)
T 1zvt_A 80 LPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPE--N-AHVMPPVVIEDASDMLLAITQAGRM 156 (256)
T ss_dssp CCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCT--T-CCBCCCEECCCTTCEEEEEETTSEE
T ss_pred CCCCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECC--C-CEEEEEEEecCCCCEEEEEcCCCeE
Confidence 1123467666544456778889999999999875421 1112221 1 223334444 345578888888988
Q ss_pred EEeeec
Q psy988 186 YIWKTH 191 (408)
Q Consensus 186 ~i~d~~ 191 (408)
..++..
T Consensus 157 lrf~~~ 162 (256)
T 1zvt_A 157 LMFPVS 162 (256)
T ss_dssp EEEEGG
T ss_pred EEEEHH
Confidence 888764
No 394
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=24.36 E-value=2.5e+02 Score=21.84 Aligned_cols=103 Identities=8% Similarity=-0.028 Sum_probs=52.0
Q ss_pred EEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccC-------cccce
Q psy988 81 FAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRD-------LNLSC 153 (408)
Q Consensus 81 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-------~~~~~ 153 (408)
.+++.+.+|.|+--....... ..........+..+........++..+..|.++-+.... |..+.
T Consensus 4 v~v~lT~~G~iKr~~~~~~~~--------~~~~lke~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~ 75 (256)
T 1zvt_A 4 VTIVLSQMGWVRSAKGHDIDA--------PGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLT 75 (256)
T ss_dssp EEEEEETTSEEEEEESSCCCS--------TTSCCCTTCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGG
T ss_pred EEEEEeCCCEEEEeeCCcCCc--------eeccCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEee
Confidence 455667777776554332110 000011123444444444455677777788877665432 11111
Q ss_pred eecCccccccceEEEEecCCCEEEEeecCceEEEeeec
Q psy988 154 KYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTH 191 (408)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 191 (408)
.+-.......+..+....++.+|+.++..|.++...+.
T Consensus 76 ~~i~L~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~ 113 (256)
T 1zvt_A 76 GKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFN 113 (256)
T ss_dssp GTCCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGG
T ss_pred eeecCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHH
Confidence 11111112334444333456678888899998887764
No 395
>3oky_A Plexin-A2; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okt_A* 4gza_A
Probab=23.59 E-value=2.5e+02 Score=25.93 Aligned_cols=58 Identities=14% Similarity=0.108 Sum_probs=36.9
Q ss_pred CeEEEecCCCeEEEEEcCCC----eeeeEEeeccceece-eEEEEcCCCCEEEEecCCceEEE
Q psy988 263 DKILVTSNDSRIRLYDLRDL----NLSCKYKGYVNVSSQ-IKASFSHDGKYIVSGSENQCIYI 320 (408)
Q Consensus 263 ~~l~~~~~d~~i~i~d~~~~----~~~~~~~~~~~~~~v-~~~~~s~~~~~l~~~~~dg~i~i 320 (408)
..+..|+.+|.|.-.-+... ..+..+.......+| ..+.++++..+|++++..+.+++
T Consensus 413 tVlFLGT~~G~l~Kv~~~~~~~~~~~~ee~~v~~~~~pI~~~l~l~~~~~~Lyv~s~~~V~qv 475 (681)
T 3oky_A 413 SVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 475 (681)
T ss_dssp EEEEEEBTTSEEEEEECCCTTTCCEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred EEEEEECCCceEEEEEECCCCCceEEEEEeeeccCCCceeeeeEEcCCCCEEEEEecCEEEEE
Confidence 44567888998875544321 122233322233455 58899999999999988877666
No 396
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=23.41 E-value=4.4e+02 Score=24.26 Aligned_cols=58 Identities=9% Similarity=-0.007 Sum_probs=35.0
Q ss_pred EEEEEecCCEEEEE-eccCCeeeEEEEEeeccccccCCCCeEEEeeCCCC--CeEEEeeCCCeEEE
Q psy988 81 FAVVGSYDGRCIFY-TTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGE--DKILVTSNDSRIRL 143 (408)
Q Consensus 81 ~l~~~~~dg~i~iw-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~i 143 (408)
.++.|+.+|.|.=. ...... ......... ....+|..|.++++. ..|++++..+.+++
T Consensus 417 V~flGT~~G~l~Kvv~~~~~~-~~~ee~~~~----~~~~pI~~l~l~~~~~~~~Lyv~s~~~V~~v 477 (663)
T 1olz_A 417 VMFVSTDRGALHKAISLEHAV-HIIEETQLF----QDFEPVQTLLLSSKKGNRFVYAGSNSGVVQA 477 (663)
T ss_dssp EEEEEETTSEEEEEEECSSSE-EEEEEEECC----TTCCCCCEEEECCSSSSCEEEEECSSCEEEE
T ss_pred EEEEEcCCcEEEEEEecCCCc-eEEEEeccc----CCCCcceeeEeccCCCccEEEEEEcCeEEEE
Confidence 57788889987543 333221 111112121 223578899999887 88988888765554
No 397
>1b44_D ETB-POL, protein (B-POL subunit of heat-labIle enterotoxin); B subunit, heat-labIle enterotoxin anti-HSV; 3.30A {Escherichia coli} SCOP: b.40.2.1
Probab=23.12 E-value=25 Score=22.14 Aligned_cols=21 Identities=29% Similarity=0.377 Sum_probs=11.1
Q ss_pred EEEEeCCCCCCccccccccCC
Q psy988 388 IRVFLNKTKPKHSSLPVSALA 408 (408)
Q Consensus 388 v~iw~~~~~~~~~~~~~s~~a 408 (408)
+.+|+.++...++.+.+++||
T Consensus 85 lcvwnnktpnsiaai~~~~la 105 (129)
T 1b44_D 85 LCVWNNKTPNSIAAISMEKLA 105 (129)
T ss_dssp EEEETTSSSEEEEEEEEECTT
T ss_pred eeeecCCCCchhhhhhhhhhc
Confidence 455555555555555555443
No 398
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=23.12 E-value=3.7e+02 Score=24.74 Aligned_cols=57 Identities=9% Similarity=0.181 Sum_probs=36.7
Q ss_pred eEEEecCCCeEEEE-EcCCCe-eeeEEeeccceeceeEEEEcCCC--CEEEEecCCceEEE
Q psy988 264 KILVTSNDSRIRLY-DLRDLN-LSCKYKGYVNVSSQIKASFSHDG--KYIVSGSENQCIYI 320 (408)
Q Consensus 264 ~l~~~~~d~~i~i~-d~~~~~-~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~i 320 (408)
.++.|+.+|.|.-. ...... .+..........+|..+.++++. .+|++++..+.++|
T Consensus 417 V~flGT~~G~l~Kvv~~~~~~~~~ee~~~~~~~~pI~~l~l~~~~~~~~Lyv~s~~~V~~v 477 (663)
T 1olz_A 417 VMFVSTDRGALHKAISLEHAVHIIEETQLFQDFEPVQTLLLSSKKGNRFVYAGSNSGVVQA 477 (663)
T ss_dssp EEEEEETTSEEEEEEECSSSEEEEEEEECCTTCCCCCEEEECCSSSSCEEEEECSSCEEEE
T ss_pred EEEEEcCCcEEEEEEecCCCceEEEEecccCCCCcceeeEeccCCCccEEEEEEcCeEEEE
Confidence 56778888887443 333322 22223233334577889999988 99999988876665
No 399
>3ol2_B Plexin-B1; beta-propeller, signalling, extacellular, signaling protein; HET: NAG BMA; 2.99A {Homo sapiens}
Probab=22.26 E-value=2.3e+02 Score=25.17 Aligned_cols=57 Identities=5% Similarity=-0.067 Sum_probs=35.8
Q ss_pred eEEEecCCCeEEEEEcC-CC--eeeeEEeeccceece-eEEEEcCCCCEEEEecCCceEEEe
Q psy988 264 KILVTSNDSRIRLYDLR-DL--NLSCKYKGYVNVSSQ-IKASFSHDGKYIVSGSENQCIYIW 321 (408)
Q Consensus 264 ~l~~~~~d~~i~i~d~~-~~--~~~~~~~~~~~~~~v-~~~~~s~~~~~l~~~~~dg~i~iw 321 (408)
.+..|+.+|.|.-.-+. ++ ..+..+.. ....+| ..+.++++..+|.+++..+.++|-
T Consensus 402 V~FlGT~~G~l~Kv~~~~~~~~~~~ee~~v-~~~~pi~~~l~l~~~~~~Lyv~s~~~V~~vp 462 (528)
T 3ol2_B 402 IAFLGDSQGQLHRVYLGPGSDGHPYSTQSI-QQGSAVSRDLTFDGTFEHLYVMTQSTLLKVP 462 (528)
T ss_dssp EEEEEETTSEEEEEECSSSCCSCCSEEEES-STTSCCCSCCEECTTSSEEEEECSSCEEEEE
T ss_pred EEEEECCCCeEEEEEEcCCCCeeEEeeecc-CCCCcceeeEEEecCCCEEEEEeCCEEEEEE
Confidence 45567888887654443 21 22333333 223456 378999999999999888776653
No 400
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=21.77 E-value=3.1e+02 Score=25.21 Aligned_cols=57 Identities=7% Similarity=0.091 Sum_probs=33.8
Q ss_pred eEEEeeCCCeEE-EEEccCcc-------cceeecCccccccceEEEEecCCCEEEEeecCceEEE
Q psy988 131 KILVTSNDSRIR-LYDLRDLN-------LSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYI 187 (408)
Q Consensus 131 ~l~~~~~dg~i~-i~d~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 187 (408)
.++.|+.+|.|. +.-..... .+..+........+..+.+++++++|++++.++.+++
T Consensus 431 VlFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v~~~~~pI~~L~ld~~~~~LYV~t~~~V~kV 495 (667)
T 4gz8_A 431 VMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 495 (667)
T ss_dssp EEEEEETTSEEEEEEEEC------CEEEEEEEEECSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEECCCCeEEEEEEcCCCCccccceEEEEEEeecCCCceeeeEEEcCCCCEEEEEECCEEEEE
Confidence 456677888764 32222111 1122222233445778999999999999998875554
No 401
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=21.43 E-value=1.9e+02 Score=25.81 Aligned_cols=57 Identities=14% Similarity=0.145 Sum_probs=32.8
Q ss_pred eEEEeeCCCeEEEEEccCcc----cceeecCccccccce-EEEEecCCCEEEEeecCceEEE
Q psy988 131 KILVTSNDSRIRLYDLRDLN----LSCKYKGYVNVSSQI-KASFSHDGKYIVSGSENQCIYI 187 (408)
Q Consensus 131 ~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~dg~i~i 187 (408)
.++.|+.+|.|.-..+.... ....+........|. .+.+++++.+|++++..+.+++
T Consensus 415 V~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 415 VVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp EEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred EEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEecccccee
Confidence 46667888877655443221 122222222123353 6888898889999887765544
No 402
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=21.05 E-value=3.8e+02 Score=22.62 Aligned_cols=113 Identities=10% Similarity=0.069 Sum_probs=59.3
Q ss_pred CceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCc-----------eeeeeecCCceeeEEEEEecCCCEEEEEecCCEE
Q psy988 23 DFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKV-----------AVWNEVEGQTKLITAANFCENGKFAVVGSYDGRC 91 (408)
Q Consensus 23 ~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 91 (408)
..|..++. .+...+.-..||.|+.|=...... .....+. ....|..++. -..+.+....||.|
T Consensus 75 ~~v~~va~---G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~-~~~~i~~va~--G~~hs~al~~~G~v 148 (423)
T 3mvd_K 75 PDAVDISA---GGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLID-LPGKALCISA--GDSHSACLLEDGRV 148 (423)
T ss_dssp SSEEEEEE---CSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECC-CSSCEEEEEE--CSSEEEEEETTSCE
T ss_pred CCceEEee---CCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEc-CCCCEEEEEc--CcCeEEEEeCCCeE
Confidence 45666665 455666667899999996543110 0001111 1234555554 33455566788999
Q ss_pred EEEec--cCCeee-------EEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccC
Q psy988 92 IFYTT--DQLKYH-------TQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRD 148 (408)
Q Consensus 92 ~iw~~--~~~~~~-------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 148 (408)
..|-. ...... ....... .....|..++.- ....++-..+|.|+.|-...
T Consensus 149 ~~wG~~~n~~GqlG~~~~~~~~~p~~~-----~~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~ 207 (423)
T 3mvd_K 149 FAWGSFRDSHGNMGLTIDGNKRTPIDL-----MEGTVCCSIASG--ADHLVILTTAGKVFTVGCAE 207 (423)
T ss_dssp EEEECEECSSSEEESBTTBCEEEEEES-----STTCCEEEEEEC--SSEEEEEETTSCEEEEECCT
T ss_pred EEEeCCCCCCCCcCcCCCCCCceeeEe-----cCCCcEEEEecC--CCeEEEEecCCeEEEeeCCc
Confidence 99975 221110 0111111 112346656543 34555567788999996543
No 403
>1xks_A Nuclear pore complex protein NUP133; beta-propeller, helical insertions, protein transport; 2.35A {Homo sapiens} SCOP: b.69.14.1
Probab=21.05 E-value=4.1e+02 Score=22.99 Aligned_cols=114 Identities=8% Similarity=0.036 Sum_probs=51.4
Q ss_pred EEEecCCCEEEEEecCCEEEEEeccCCee---eE--EEEEeeccccccCCCCeEEEeeCCC--------CCeEEEeeCCC
Q psy988 73 ANFCENGKFAVVGSYDGRCIFYTTDQLKY---HT--QIHVRSTRGKNATGRKISGIEPMPG--------EDKILVTSNDS 139 (408)
Q Consensus 73 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~---~~--~~~~~~~~~~~~~~~~v~~~~~~~~--------~~~l~~~~~dg 139 (408)
..++ +..+.+..+ ...+.||....... .. .+.++ .....+.....++.+.+. ..-++....+|
T Consensus 43 g~i~-~~GyAlvv~-~~~l~VW~y~~~~~~~~~~c~~lpLp--~sd~~~~~~lvsi~~~~~~~~~~s~~~pGlliVsptG 118 (450)
T 1xks_A 43 INID-EGGWACLVC-KEKLIIWKIALSPITKLSVCKELQLP--PSDFHWSADLVALSYSSPSGEAHSTQAVAVMVATREG 118 (450)
T ss_dssp EEEC-TTSEEEEEE-TTEEEEEECCSSCCGGGCCEEEEECC--CCSSCCCGGGEEEEECC-------CTTEEEEEECTTC
T ss_pred EEEC-CCcEEEEEe-CCeEEEEeecCCCCCCcccceeccCC--ccccccCCcEEEEEcCCCccccccCCCceEEEEcCCc
Confidence 3455 444444443 45899999876521 11 11111 111122222344433322 22344444499
Q ss_pred eEEEEEccCcc-cceeecCcccc-ccceEEEEecCCCEEEEeecCceEEEeeec
Q psy988 140 RIRLYDLRDLN-LSCKYKGYVNV-SSQIKASFSHDGKYIVSGSENQCIYIWKTH 191 (408)
Q Consensus 140 ~i~i~d~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 191 (408)
.|+.|.--... .-......... ..+..+. ..++.-++.+..-|.+....++
T Consensus 119 ~VryWesIs~~~~~~ei~~~L~~~E~vt~l~-n~epaGfIlaTStgrl~~lsir 171 (450)
T 1xks_A 119 SIRYWPSLAGEDTYTEAFVDSGGDKTYSFLT-AVQGGSFILSSSGSQLIRLIPE 171 (450)
T ss_dssp EEEEESCTTCTTCCEEEECC----CCEEEEE-EETTTEEEEEETTCCEEEEEEC
T ss_pred cEEEccccCCCCceEEEEecCCCCceEEEEe-ecCCceEEEEeccceEEEEEec
Confidence 99999743321 11122222221 2233332 2234445555566777777775
No 404
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=20.71 E-value=1.8e+02 Score=18.90 Aligned_cols=13 Identities=8% Similarity=0.317 Sum_probs=7.4
Q ss_pred EEEEecCCCEEEE
Q psy988 72 AANFCENGKFAVV 84 (408)
Q Consensus 72 ~~~~~~~~~~l~~ 84 (408)
.+.+..+|++++.
T Consensus 53 ~l~l~~dGNLVl~ 65 (111)
T 3mez_A 53 TLRLNNRGQLEIH 65 (111)
T ss_dssp EEEECTTSCEEEE
T ss_pred EEEEcCCCcEEEE
Confidence 4456666665554
Done!