RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy988
(408 letters)
>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic
proteins that cover a wide variety of functions
including adaptor/regulatory modules in signal
transduction, pre-mRNA processing and cytoskeleton
assembly; typically contains a GH dipeptide 11-24
residues from its N-terminus and the WD dipeptide at its
C-terminus and is 40 residues long, hence the name WD40;
between GH and WD lies a conserved core; serves as a
stable propeller-like platform to which proteins can
bind either stably or reversibly; forms a propeller-like
structure with several blades where each blade is
composed of a four-stranded anti-parallel b-sheet;
instances with few detectable copies are hypothesized to
form larger structures by dimerization; each WD40
sequence repeat forms the first three strands of one
blade and the last strand in the next blade; the last
C-terminal WD40 repeat completes the blade structure of
the first WD40 repeat to create the closed ring
propeller-structure; residues on the top and bottom
surface of the propeller are proposed to coordinate
interactions with other proteins and/or small ligands; 7
copies of the repeat are present in this alignment.
Length = 289
Score = 103 bits (259), Expect = 3e-25
Identities = 70/325 (21%), Positives = 119/325 (36%), Gaps = 69/325 (21%)
Query: 2 DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
D T+++W + E L + H V + D Y SGS D +RLW++ +
Sbjct: 30 DGTIKVWDLETGELLRTLKGHTGPVRDVAASA-DGTYLASGSSDKTIRLWDLETGECV-- 86
Query: 61 NEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKI 120
+ G T +++ F +G+ S D + + K + + RG +
Sbjct: 87 RTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKC-----LTTLRGHTDWVNSV 141
Query: 121 SGIEPMPGEDKILVT-SNDSRIRLYDLRDLNLSCKYKG-YVNVSSQIKASFSHDGKYIVS 178
+ + + + S D I+L+DLR G V+S +FS DG+ ++S
Sbjct: 142 A----FSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNS---VAFSPDGEKLLS 194
Query: 179 GSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDK 238
S + I +W D + + ++ H V F+P L+ +
Sbjct: 195 SSSDGTIKLW----DLSTGKCLGT--------LRGHENGVNSVAFSPDGYLLAS------ 236
Query: 239 SESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVN-VSSQ 297
S D IR++DLR G+ N V+S
Sbjct: 237 -----------------------------GSEDGTIRVWDLRTGECVQTLSGHTNSVTS- 266
Query: 298 IKASFSHDGKYIVSGSENQCIYIWK 322
++S DGK + SGS + I IW
Sbjct: 267 --LAWSPDGKRLASGSADGTIRIWD 289
Score = 100 bits (250), Expect = 6e-24
Identities = 76/378 (20%), Positives = 130/378 (34%), Gaps = 104/378 (27%)
Query: 21 HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGK 80
H VT + F P D + +GS DG +++W++ ++ ++G T + +G
Sbjct: 8 HTGGVTCVAFSP-DGKLLATGSGDGTIKVWDLETGELL--RTLKGHTGPVRDVAASADGT 64
Query: 81 FAVVGSYDGRCIFYTTDQLK-YHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDS 139
+ GS D + + + T S +S + P + +S D
Sbjct: 65 YLASGSSDKTIRLWDLETGECVRTLTGHTSY---------VSSVAFSPDGRILSSSSRDK 115
Query: 140 RIRLYDLRDLNLSCKY-----KGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDY 194
I+++D+ C +VN +FS DG ++ S S++ I +W D
Sbjct: 116 TIKVWDVETGK--CLTTLRGHTDWVNS-----VAFSPDGTFVASSSQDGTIKLW----DL 164
Query: 195 AKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKIS 254
V + H V F
Sbjct: 165 RTGKCVAT--------LTGHTGEVNSVAF------------------------------- 185
Query: 255 GIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVN-VSSQIKASFSHDGKYIVSGS 313
P +K+L +S+D I+L+DL +G+ N V+S +FS DG + SGS
Sbjct: 186 ----SPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNS---VAFSPDGYLLASGS 238
Query: 314 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSE 373
E+ I +W D V+ + H VT ++P
Sbjct: 239 EDGTIRVW----DLRTGECVQT--------LSGHTNSVTSLAWSP--------------- 271
Query: 374 STGYVLVSADFNGVIRVF 391
G L S +G IR++
Sbjct: 272 -DGKRLASGSADGTIRIW 288
Score = 97.0 bits (242), Expect = 9e-23
Identities = 59/230 (25%), Positives = 96/230 (41%), Gaps = 34/230 (14%)
Query: 1 MDKTVRLWHISRKECLCCF-QHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKK-VA 58
DKT+RLW + EC+ H +V+++ F P D R S S D +++W++ K +
Sbjct: 71 SDKTIRLWDLETGECVRTLTGHTSYVSSVAFSP-DGRILSSSSRDKTIKVWDVETGKCLT 129
Query: 59 VWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGR 118
G T + + F +G F S DG + K TG
Sbjct: 130 TLR---GHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK----------CVATLTGH 176
Query: 119 K--ISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVN-VSSQIKASFSHDGKY 175
++ + P +K+L +S+D I+L+DL +G+ N V+S +FS DG
Sbjct: 177 TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNS---VAFSPDGYL 233
Query: 176 IVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAP 225
+ SGSE+ I +W D V+ + H VT ++P
Sbjct: 234 LASGSEDGTIRVW----DLRTGECVQT--------LSGHTNSVTSLAWSP 271
Score = 43.9 bits (104), Expect = 9e-05
Identities = 41/182 (22%), Positives = 62/182 (34%), Gaps = 67/182 (36%)
Query: 211 IKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSN 270
+K H VTC F+P +L+ ATG S
Sbjct: 5 LKGHTGGVTCVAFSPDGKLL-----------------ATG------------------SG 29
Query: 271 DSRIRLYDLRDLNLSCKYKG-YVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAK 329
D I+++DL L KG V + S DG Y+ SGS ++ I +W D
Sbjct: 30 DGTIKVWDLETGELLRTLKGHTGPVR---DVAASADGTYLASGSSDKTIRLW----DLET 82
Query: 330 FSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIR 389
VR + H + V+ F+P G +L S+ + I+
Sbjct: 83 GECVRT--------LTGHTSYVSSVAFSP----------------DGRILSSSSRDKTIK 118
Query: 390 VF 391
V+
Sbjct: 119 VW 120
>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction
only].
Length = 466
Score = 92.1 bits (227), Expect = 3e-20
Identities = 75/335 (22%), Positives = 126/335 (37%), Gaps = 35/335 (10%)
Query: 1 MDKTVRLWHIS--RKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVA 58
+D TV+LW +S K H + VT++ F P SLDG ++LW++ K
Sbjct: 132 LDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPL 191
Query: 59 VWNEVEGQTKLITAANFCENGKFAVVG-SYDGRCIFYTTDQLK-YHTQIHVRSTRGKNAT 116
+ G T +++ F +G + S DG + K + + S ++
Sbjct: 192 ST--LAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSF 249
Query: 117 GRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYI 176
P + S+D IRL+DLR + S + SS + +FS DGK +
Sbjct: 250 ---------SPDGSLLASGSSDGTIRLWDLRSSS-SLLRTLSGHSSSVLSVAFSPDGKLL 299
Query: 177 VSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEP 236
SGS + + +W + + +K H V+ F+P L+++
Sbjct: 300 ASGSSDGTVRLW----------DLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSD 349
Query: 237 DK-------SESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYK 289
D + + P + S D +RL+DL +L
Sbjct: 350 DGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLD 409
Query: 290 GYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTH 324
G+ + FS DGK + SGS + I +W
Sbjct: 410 GHTSRV--TSLDFSPDGKSLASGSSDNTIRLWDLK 442
Score = 84.0 bits (206), Expect = 1e-17
Identities = 78/343 (22%), Positives = 126/343 (36%), Gaps = 42/343 (12%)
Query: 1 MDKTVRLWHISRKECLCC---FQHIDFVTAICFHPRDDRYFLS--GSLDGKLRLWNIPDK 55
D T++LW + E L H V+ + D L SLDG ++LW+
Sbjct: 85 SDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWD-LST 143
Query: 56 KVAVWNEVEGQTKLITAANFCENGKFAVVGS-YDGRCIFYTTDQLKYHTQIHVRSTRGKN 114
+ +EG ++ +T+ F +GK GS DG + K
Sbjct: 144 PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK--------PLSTLA 195
Query: 115 ATGRKISGIEPMP-GEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDG 173
+S + P G I S+D IRL+DL S + +SFS DG
Sbjct: 196 GHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLS--TGKLLRSTLSGHSDSVVSSFSPDG 253
Query: 174 KYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQ 233
+ SGS + I +W + ++ H++ V F+P +L+ +
Sbjct: 254 SLLASGSSDGTIRLWDLRSSSSLLRTLSG-----------HSSSVLSVAFSPDGKLLASG 302
Query: 234 ME---------PDKSESTGYVLNATGRKISGIEPMPGEDKILVT-SNDSRIRLYDLRDLN 283
+ L +S + P ++ S+D IRL+DLR
Sbjct: 303 SSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362
Query: 284 LSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHD 326
+G+ NV S SFS DG+ + SGS + + +W
Sbjct: 363 PLKTLEGHSNVLS---VSFSPDGRVVSSGSTDGTVRLWDLSTG 402
Score = 61.3 bits (147), Expect = 3e-10
Identities = 60/317 (18%), Positives = 107/317 (33%), Gaps = 37/317 (11%)
Query: 61 NEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKI 120
K + +GS + + + S+ I
Sbjct: 10 ENKSKLLKKSELGPSLNSLSLLSLGSSESGILLLALL-SDSLVSLPDLSSLLLRGHEDSI 68
Query: 121 SGIEPMPGEDKILVTSNDSRIRLYDLRDLN-LSCKYKGYVNVSSQIKASFSHDGKYIVS- 178
+ I P + +L S+D I+L+DL + L +G + S A S DG I+
Sbjct: 69 TSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLA 128
Query: 179 -GSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPD 237
S + + +W S+ + + H+ VT F+P +L+ + D
Sbjct: 129 SSSLDGTVKLWD-------LSTPGKLIRTL----EGHSESVTSLAFSPDGKLLASGSSLD 177
Query: 238 --------KSESTGYVLNATGRKISGIEPMP-GEDKILVTSNDSRIRLYDLRDLNLSCKY 288
++ L +S + P G I S+D IRL+DL
Sbjct: 178 GTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLS--TGKLLR 235
Query: 289 KGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHN 348
S + +SFS DG + SGS + I +W + ++ H+
Sbjct: 236 STLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSG-----------HS 284
Query: 349 AVVTCAVFAPCPELIIA 365
+ V F+P +L+ +
Sbjct: 285 SSVLSVAFSPDGKLLAS 301
>gnl|CDD|197651 smart00320, WD40, WD40 repeats. Note that these repeats are
permuted with respect to the structural repeats
(blades) of the beta propeller domain.
Length = 40
Score = 41.1 bits (97), Expect = 2e-05
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 13 KECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWN 51
E L + H VT++ F P D +Y SGS DG ++LW+
Sbjct: 2 GELLKTLKGHTGPVTSVAFSP-DGKYLASGSDDGTIKLWD 40
Score = 31.9 bits (73), Expect = 0.041
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 168 SFSHDGKYIVSGSENQCIYIWK 189
+FS DGKY+ SGS++ I +W
Sbjct: 19 AFSPDGKYLASGSDDGTIKLWD 40
Score = 31.9 bits (73), Expect = 0.041
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 301 SFSHDGKYIVSGSENQCIYIWK 322
+FS DGKY+ SGS++ I +W
Sbjct: 19 AFSPDGKYLASGSDDGTIKLWD 40
Score = 26.9 bits (60), Expect = 2.5
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 64 EGQTKLITAANFCENGKFAVVGSYDGRCIFY 94
+G T +T+ F +GK+ GS DG +
Sbjct: 9 KGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39
>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat.
Length = 39
Score = 41.2 bits (97), Expect = 2e-05
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 21 HIDFVTAICFHPRDDRYFLSGSLDGKLRLWN 51
H VT++ F P D SGS DG +R+W+
Sbjct: 10 HTGPVTSVAFSP-DGNLLASGSDDGTVRVWD 39
Score = 31.2 bits (71), Expect = 0.055
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 168 SFSHDGKYIVSGSENQCIYIWK 189
+FS DG + SGS++ + +W
Sbjct: 18 AFSPDGNLLASGSDDGTVRVWD 39
Score = 31.2 bits (71), Expect = 0.055
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 301 SFSHDGKYIVSGSENQCIYIWK 322
+FS DG + SGS++ + +W
Sbjct: 18 AFSPDGNLLASGSDDGTVRVWD 39
Score = 25.0 bits (55), Expect = 9.7
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 64 EGQTKLITAANFCENGKFAVVGSYDGRCIFY 94
+G T +T+ F +G GS DG +
Sbjct: 8 KGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional.
Length = 793
Score = 38.1 bits (88), Expect = 0.007
Identities = 49/200 (24%), Positives = 95/200 (47%), Gaps = 31/200 (15%)
Query: 2 DKTVRLWHISRKECLCCF-QHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
+ V++W ++R + + +H V +I + D SGS DG ++LW+I ++ V++
Sbjct: 554 EGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSI-NQGVSI- 611
Query: 61 NEVEGQTKLITAANFC------ENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKN 114
G K T AN C E+G+ GS D + +Y K + + + G +
Sbjct: 612 ----GTIK--TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPK----LPLCTMIGHS 661
Query: 115 ATGRKISGIEPMPGEDKILVTSNDSRIRLYDL----RDLNLSC--KYKGYVNVSSQIKAS 168
T + ++ ++ +S D+ ++L+DL +N + + G+ NV + + S
Sbjct: 662 KTVSYVRFVD----SSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLS 717
Query: 169 FSHDGKYIVSGSENQCIYIW 188
S DG YI +GSE ++++
Sbjct: 718 VS-DG-YIATGSETNEVFVY 735
>gnl|CDD|223893 COG0823, TolB, Periplasmic component of the Tol biopolymer
transport system [Intracellular trafficking and
secretion].
Length = 425
Score = 34.7 bits (80), Expect = 0.085
Identities = 33/171 (19%), Positives = 53/171 (30%), Gaps = 41/171 (23%)
Query: 30 FHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDG 89
F P + S S DG ++ + + +T F N + S DG
Sbjct: 245 FSPDGSKLAFSSSRDGSPDIY--------LMDLDGKNLPRLTNG-FGINTSPSW--SPDG 293
Query: 90 RCIFYTTDQLKYHTQIHVRSTRGKNAT-----------------GRKISGIEPMPGEDKI 132
I +T+D+ QI++ G T G KI G+ I
Sbjct: 294 SKIVFTSDR-GGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDI 352
Query: 133 LVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQ 183
+R L Y+N S S++ +G+ I+ S
Sbjct: 353 DKN---DLASGGKIRILT-----STYLNESP----SWAPNGRMIMFSSGQG 391
>gnl|CDD|179635 PRK03708, ppnK, inorganic polyphosphate/ATP-NAD kinase;
Provisional.
Length = 277
Score = 31.6 bits (72), Expect = 0.64
Identities = 18/101 (17%), Positives = 37/101 (36%), Gaps = 14/101 (13%)
Query: 239 SESTGYVLNATGR---------KISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYK 289
+ ST Y ++A G I+ + P + +V + SRI + LR +
Sbjct: 174 TGSTAYAMSAGGPFVDPRLDAILIAPLCPFKLSSRPMVVPSSSRIDVKLLRT-----GRE 228
Query: 290 GYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKF 330
+ + Q D + + S + ++ + Y K+
Sbjct: 229 IILVIDGQYYEELPPDTEITIKKSPRKTKFVRFSKEIYPKY 269
>gnl|CDD|183102 PRK11367, PRK11367, hypothetical protein; Provisional.
Length = 476
Score = 30.0 bits (67), Expect = 2.4
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 117 GRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCK--YKGYVNVSSQIKASFSH 171
G +G + PG +K + ND++ + D+ LS K KG+ N Q++ +F +
Sbjct: 20 GTWYTGTQIQPGVEKFIKDFNDAKKKGEHAYDMTLSYKNFDKGFFNSRFQMQMTFDN 76
Score = 30.0 bits (67), Expect = 2.4
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 250 GRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCK--YKGYVNVSSQIKASFSH 304
G +G + PG +K + ND++ + D+ LS K KG+ N Q++ +F +
Sbjct: 20 GTWYTGTQIQPGVEKFIKDFNDAKKKGEHAYDMTLSYKNFDKGFFNSRFQMQMTFDN 76
>gnl|CDD|216611 pfam01621, Fusion_gly_K, Cell fusion glycoprotein K. This protein
is probably an integral membrane bound glycoprotein that
is involved in viral fusion with the host cell.
Length = 337
Score = 29.2 bits (66), Expect = 3.5
Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 12/97 (12%)
Query: 132 ILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFS---HDGKYIVSGSENQCIYIW 188
I VT ++ + L L + + C K VN + + + S HD IV G+ N Y+W
Sbjct: 61 IYVTLTNASLFLGGLENHDDRC-RKNLVNGTPVVLLARSVPLHDKVRIVLGARNCRAYLW 119
Query: 189 KTHHD--------YAKFSSVRRDRNDFWEGIKAHNAV 217
Y F ++R++R F A +
Sbjct: 120 CVQVRLICVAWFLYLAFLALRQERRMFGPVRNAAEFL 156
Score = 29.2 bits (66), Expect = 3.5
Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 12/97 (12%)
Query: 265 ILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFS---HDGKYIVSGSENQCIYIW 321
I VT ++ + L L + + C K VN + + + S HD IV G+ N Y+W
Sbjct: 61 IYVTLTNASLFLGGLENHDDRC-RKNLVNGTPVVLLARSVPLHDKVRIVLGARNCRAYLW 119
Query: 322 KTHHD--------YAKFSSVRRDRNDFWEGIKAHNAV 350
Y F ++R++R F A +
Sbjct: 120 CVQVRLICVAWFLYLAFLALRQERRMFGPVRNAAEFL 156
>gnl|CDD|177574 PHA03278, PHA03278, envelope glycoprotein K; Provisional.
Length = 347
Score = 28.2 bits (63), Expect = 9.5
Identities = 28/142 (19%), Positives = 40/142 (28%), Gaps = 26/142 (18%)
Query: 216 AVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIR 275
V + A + + P S G + I G L S I
Sbjct: 23 LVWYGSTLAKLGHGCVYAVLPLGELSDGKNFTWEAYNSTLIYVPLGNKNALDFSGFDDIC 82
Query: 276 LYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHD--------Y 327
DL + G + +I+ IV G+ N Y+WK H Y
Sbjct: 83 RTDLVNRTAIGGLAGDEALRGRIR---------IVVGARNCVAYLWKVHIRLATLAWLLY 133
Query: 328 AKFSSVR---------RDRNDF 340
F +R R+ DF
Sbjct: 134 VAFVYLRQWRRMFGVFRNDADF 155
>gnl|CDD|182804 PRK10879, PRK10879, proline aminopeptidase P II; Provisional.
Length = 438
Score = 28.2 bits (63), Expect = 10.0
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 135 TSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKY 175
T N+S +R DL ++ C+YKGY + I +F +GK+
Sbjct: 243 TENESEMRDGDLVLIDAGCEYKGY---AGDITRTFPVNGKF 280
Score = 28.2 bits (63), Expect = 10.0
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 268 TSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKY 308
T N+S +R DL ++ C+YKGY + I +F +GK+
Sbjct: 243 TENESEMRDGDLVLIDAGCEYKGY---AGDITRTFPVNGKF 280
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.135 0.421
Gapped
Lambda K H
0.267 0.0728 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 20,068,289
Number of extensions: 1866729
Number of successful extensions: 1495
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1407
Number of HSP's successfully gapped: 36
Length of query: 408
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 309
Effective length of database: 6,546,556
Effective search space: 2022885804
Effective search space used: 2022885804
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.9 bits)