BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9880
(280 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q62203|SF3A2_MOUSE Splicing factor 3A subunit 2 OS=Mus musculus GN=Sf3a2 PE=2 SV=2
Length = 475
Score = 283 bits (725), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 161/239 (67%), Positives = 172/239 (71%), Gaps = 53/239 (22%)
Query: 1 MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60
MD+Q+RPGGKTG GGVAS SESNRDRRERLRQLALETID+NKDPYFMKNHLGSYECKLCL
Sbjct: 1 MDFQHRPGGKTGSGGVASSSESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCL 60
Query: 61 TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQSCDELLLTSDAVYTHKDSILISTL 120
TLHNNEGSYLAHTQGKKHQ NLARRAAKEAK+AP Q
Sbjct: 61 TLHNNEGSYLAHTQGKKHQTNLARRAAKEAKEAPAQ------------------------ 96
Query: 121 DWGPPAPEKPRVEPKKFVKIGRPGYRVTKQRDPSNGQQSLLFQVDYPEIADDVFPRHRFM 180
PAPE+ +VE KKFVKIGRPGY+VTKQRD GQQSLLF
Sbjct: 97 ----PAPEQVKVEVKKFVKIGRPGYKVTKQRDTEMGQQSLLF------------------ 134
Query: 181 SAYSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIAFKVSDR 239
Q+DYPEIA+ + PRHRFMSAYEQRIEPPDR+WQYLL AAEPYETIAFKV R
Sbjct: 135 -------QIDYPEIAEGIMPRHRFMSAYEQRIEPPDRRWQYLLMAAEPYETIAFKVPSR 186
>sp|Q6AXT8|SF3A2_RAT Splicing factor 3A subunit 2 OS=Rattus norvegicus GN=Sf3a2 PE=2
SV=1
Length = 471
Score = 278 bits (712), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 163/239 (68%), Positives = 172/239 (71%), Gaps = 53/239 (22%)
Query: 1 MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60
MD+Q+RPGGKTG GGVAS SESNRDRRERLRQLALETID+NKDPYFMKNHLGSYECKLCL
Sbjct: 1 MDFQHRPGGKTGSGGVASSSESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCL 60
Query: 61 TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQSCDELLLTSDAVYTHKDSILISTL 120
TLHNNEGSYLAHTQGKKHQ NLARRAAKEAK+AP Q
Sbjct: 61 TLHNNEGSYLAHTQGKKHQTNLARRAAKEAKEAPAQ------------------------ 96
Query: 121 DWGPPAPEKPRVEPKKFVKIGRPGYRVTKQRDPSNGQQSLLFQVDYPEIADDVFPRHRFM 180
PAPEK +VE KKFVKIGRPGY+VTKQRD GQQSLLF
Sbjct: 97 ----PAPEKVKVEVKKFVKIGRPGYKVTKQRDTEMGQQSLLF------------------ 134
Query: 181 SAYSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIAFKVSDR 239
Q+DYPEIA+ V PRHRFMSAYEQRIEPPDR+WQYLL AAEPYETIAFKV R
Sbjct: 135 -------QIDYPEIAEGVMPRHRFMSAYEQRIEPPDRRWQYLLMAAEPYETIAFKVPSR 186
>sp|Q15428|SF3A2_HUMAN Splicing factor 3A subunit 2 OS=Homo sapiens GN=SF3A2 PE=1 SV=2
Length = 464
Score = 278 bits (712), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 162/239 (67%), Positives = 172/239 (71%), Gaps = 53/239 (22%)
Query: 1 MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60
MD+Q+RPGGKTG GGVAS SESNRDRRERLRQLALETID+NKDPYFMKNHLGSYECKLCL
Sbjct: 1 MDFQHRPGGKTGSGGVASSSESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCL 60
Query: 61 TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQSCDELLLTSDAVYTHKDSILISTL 120
TLHNNEGSYLAHTQGKKHQ NLARRAAKEAK+AP Q
Sbjct: 61 TLHNNEGSYLAHTQGKKHQTNLARRAAKEAKEAPAQ------------------------ 96
Query: 121 DWGPPAPEKPRVEPKKFVKIGRPGYRVTKQRDPSNGQQSLLFQVDYPEIADDVFPRHRFM 180
PAPEK +VE KKFVKIGRPGY+VTKQRD GQQSLLF
Sbjct: 97 ----PAPEKVKVEVKKFVKIGRPGYKVTKQRDSEMGQQSLLF------------------ 134
Query: 181 SAYSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIAFKVSDR 239
Q+DYPEIA+ + PRHRFMSAYEQRIEPPDR+WQYLL AAEPYETIAFKV R
Sbjct: 135 -------QIDYPEIAEGIMPRHRFMSAYEQRIEPPDRRWQYLLMAAEPYETIAFKVPSR 186
>sp|A5PJN8|SF3A2_BOVIN Splicing factor 3A subunit 2 OS=Bos taurus GN=SF3A2 PE=2 SV=1
Length = 477
Score = 277 bits (709), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 162/239 (67%), Positives = 172/239 (71%), Gaps = 53/239 (22%)
Query: 1 MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60
MD+Q+RPGGKTG GGVAS SESNRDRRERLRQLALETID+NKDPYFMKNHLGSYECKLCL
Sbjct: 1 MDFQHRPGGKTGSGGVASSSESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCL 60
Query: 61 TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQSCDELLLTSDAVYTHKDSILISTL 120
TLHNNEGSYLAHTQGKKHQ NLARRAAKEAK+AP Q
Sbjct: 61 TLHNNEGSYLAHTQGKKHQTNLARRAAKEAKEAPAQ------------------------ 96
Query: 121 DWGPPAPEKPRVEPKKFVKIGRPGYRVTKQRDPSNGQQSLLFQVDYPEIADDVFPRHRFM 180
PAPEK +VE KKFVKIGRPGY+VTKQRD GQQSLLF
Sbjct: 97 ----PAPEKVKVEVKKFVKIGRPGYKVTKQRDTEMGQQSLLF------------------ 134
Query: 181 SAYSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIAFKVSDR 239
Q+DYPEIA+ + PRHRFMSAYEQRIEPPDR+WQYLL AAEPYETIAFKV R
Sbjct: 135 -------QIDYPEIAEGIMPRHRFMSAYEQRIEPPDRRWQYLLMAAEPYETIAFKVPSR 186
>sp|Q9P7L8|SAP62_SCHPO Pre-mRNA-splicing factor sap62 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=sap62 PE=1 SV=1
Length = 217
Score = 223 bits (567), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 119/243 (48%), Positives = 147/243 (60%), Gaps = 47/243 (19%)
Query: 1 MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60
MDYQNR G + GGGGVA + E+N RRERLR+LALETIDL+KDPY MKNHLG++EC+LCL
Sbjct: 1 MDYQNRAGVRFGGGGVAGYQETNAARRERLRKLALETIDLSKDPYLMKNHLGTFECRLCL 60
Query: 61 TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQSCDELLLTSDAVYTHKDSILISTL 120
T H NE SYL HTQGKKHQ NLARR A E K + + + LL S + K S+
Sbjct: 61 TTHANENSYLTHTQGKKHQTNLARRQALENKKSQENAPQVLLGISQSHVQVKKSV----- 115
Query: 121 DWGPPAPEKPRVEPKKFVKIGRPGYRVTKQRDPSNGQQSLLFQVDYPEIADDVFPRHRFM 180
VKIGRPGY+V+K R+ +G+ L FQ+ YP+I + PR
Sbjct: 116 -----------------VKIGRPGYKVSKIREAESGKFGLRFQIKYPDIEVNAKPR---- 154
Query: 181 SAYSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIAFKVSDRT 240
+R MSAYEQR+E PDRK+QYL+ AAEPYE+IAFK+
Sbjct: 155 ---------------------YRIMSAYEQRVEAPDRKFQYLVVAAEPYESIAFKIDRAP 193
Query: 241 GLY 243
G +
Sbjct: 194 GKF 196
>sp|Q54B65|SF3A2_DICDI Splicing factor 3A subunit 2 OS=Dictyostelium discoideum GN=sf3a2
PE=3 SV=1
Length = 215
Score = 218 bits (555), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 112/231 (48%), Positives = 142/231 (61%), Gaps = 50/231 (21%)
Query: 9 GKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCLTLHNNEGS 68
GK G GG+ S N DRRER +QL LE +D++KDPY + NH+GS+EC+LCLT+HNN G+
Sbjct: 5 GKAGSGGLQSSQYDNIDRRERQKQLVLEHVDVSKDPYIISNHIGSFECRLCLTVHNNVGN 64
Query: 69 YLAHTQGKKHQANLARRAAKEAKDAPQQSCDELLLTSDAVYTHKDSILISTLDWGPPAPE 128
YLAHTQGKKHQ +LARRAAKE ++ P S + + T+
Sbjct: 65 YLAHTQGKKHQTHLARRAAKEQRENPSVSKNNYIQTT----------------------- 101
Query: 129 KPRVEPKKFVKIGRPGYRVTKQRDPSNGQQSLLFQVDYPEIADDVFPRHRFMSAYSLLFQ 188
RV KK +KIGRPGY++ KQRD GQ SLLFQ+DYPEI + PRH
Sbjct: 102 --RVIHKKTIKIGRPGYKIIKQRDSKTGQLSLLFQIDYPEIESGLQPRH----------- 148
Query: 189 VDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIAFKVSDR 239
R MSA+EQR+E P++ +QYLLFAAEPYETIAFK+ ++
Sbjct: 149 --------------RIMSAFEQRVEQPNKDYQYLLFAAEPYETIAFKIPNK 185
>sp|Q07350|PRP11_YEAST Pre-mRNA-splicing factor PRP11 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PRP11 PE=1 SV=1
Length = 266
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 97/236 (41%), Gaps = 53/236 (22%)
Query: 16 VASWSESNRDRRERLRQLALE------TIDLNKD------PYFMKNHLGSYECKLCLTLH 63
+AS S+ N RR+ + L + T KD PY KNH G CKLC T+H
Sbjct: 16 IASESQFNLQRRKEVESLLSKGENVPYTFQDEKDDQVRSNPYIYKNHSGKLVCKLCNTMH 75
Query: 64 NNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQSCDELLLTSDAVYTHKDSILISTLDWG 123
+ S H GKKH N+ RR K + L + TH D+
Sbjct: 76 MSWSSVERHLGGKKHGLNVLRRGISIEKSS---------LGREGQTTH---------DF- 116
Query: 124 PPAPEKPRVEPKKFVKIGR--PGYRVTKQRDPSNGQQSLLFQVDY-PEIADDVFPRHRFM 180
++ +E K+ +K P ++ ++P NG L QV+Y E+ ++
Sbjct: 117 --RQQQKIIEAKQSLKNNGTIPVCKIATVKNPKNGSVGLAIQVNYSSEVKEN-------- 166
Query: 181 SAYSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIAFKV 236
VD + A V P R +S E + + ++L+ A EP+E IA ++
Sbjct: 167 -------SVDSDDKA-KVPPLIRIVSGLELS-DTKQKGKKFLVIAYEPFENIAIEL 213
>sp|Q9CPW7|ZMAT2_MOUSE Zinc finger matrin-type protein 2 OS=Mus musculus GN=Zmat2 PE=2
SV=1
Length = 199
Score = 34.7 bits (78), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 48 KNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQANLA 83
++ +G Y C +C + + ++L H GKKHQ NL
Sbjct: 74 QSEMGGYYCNVCDCVVKDSINFLDHINGKKHQRNLG 109
>sp|Q96NC0|ZMAT2_HUMAN Zinc finger matrin-type protein 2 OS=Homo sapiens GN=ZMAT2 PE=1
SV=1
Length = 199
Score = 34.7 bits (78), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 48 KNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQANLA 83
++ +G Y C +C + + ++L H GKKHQ NL
Sbjct: 74 QSEMGGYYCNVCDCVVKDSINFLDHINGKKHQRNLG 109
>sp|Q96NB3|ZN830_HUMAN Zinc finger protein 830 OS=Homo sapiens GN=ZNF830 PE=1 SV=2
Length = 372
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 27 RERLRQLALETIDLN------KDPYFMKNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQA 80
+E LR+L E L+ + P+ N LG C LC T +E + H GK+H+
Sbjct: 18 QEELRRLMKEKQRLSTSRKRIESPFAKYNRLGQLSCALCNTPVKSELLWQTHVLGKQHRE 77
Query: 81 NLAR-RAAKE 89
+A + AKE
Sbjct: 78 KVAELKGAKE 87
>sp|Q8R1N0|ZN830_MOUSE Zinc finger protein 830 OS=Mus musculus GN=Znf830 PE=1 SV=1
Length = 363
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Query: 27 RERLRQLALETIDLNKD------PYFMKNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQA 80
+E LR+L E L+ + P+ N LG C LC T +E + H GK+H+
Sbjct: 18 QEELRRLMREKQRLSTNRKRIESPFAKYNRLGQLSCALCNTPVKSELLWQTHVLGKQHRE 77
Query: 81 NLAR-RAAKEAKDAP 94
+A + AK A P
Sbjct: 78 RVAELKGAKGATQGP 92
>sp|O14029|SEC16_SCHPO COPII coat assembly protein sec16 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=sec16 PE=1 SV=2
Length = 1995
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 7/94 (7%)
Query: 60 LTLHNNEGSYLAHTQGK--KHQANLARRAAKEAKDAPQQSCDELLLTSDAVYTHKDSILI 117
L NNE ++ H Q +HQ L A+K D P+ S + L++S+ + K ++
Sbjct: 318 LESENNESTFFVHNQNSSGQHQT-LDFVASKPVTDTPELSKENTLVSSENLNDPKPNLPE 376
Query: 118 STLDWGPPAPEKPRVEPKKFVKIGRPGYRVTKQR 151
+ +D+G P VE FV + T Q+
Sbjct: 377 TEVDFGEPL----EVEAPSFVVQNNSAVQPTTQK 406
>sp|Q3MHS2|ZN830_RAT Zinc finger protein 830 OS=Rattus norvegicus GN=Znf830 PE=2 SV=1
Length = 370
Score = 33.1 bits (74), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Query: 27 RERLRQLALETIDLNKD------PYFMKNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQA 80
+E LR+L E L+ + P+ N LG C LC T +E + H GK+H+
Sbjct: 18 QEELRRLMKEKQRLSTNRKRIESPFAKYNRLGQLSCALCNTPVKSELLWQTHVLGKQHRE 77
Query: 81 NLAR-RAAKEAKDAP 94
+A + AK A P
Sbjct: 78 RVAELKGAKGATQGP 92
>sp|Q8BZ94|ZMAT4_MOUSE Zinc finger matrin-type protein 4 OS=Mus musculus GN=Zmat4 PE=2
SV=1
Length = 229
Score = 32.3 bits (72), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%)
Query: 21 ESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQA 80
E + ++ R LE + + D ++ +Y C C N+ Y AH QG KHQ
Sbjct: 165 EGKKHKKNAARVALLEQLGTSLDLGELRGLRRTYRCTTCSVSLNSIEQYHAHLQGSKHQT 224
Query: 81 NL 82
NL
Sbjct: 225 NL 226
>sp|Q07527|TRM3_YEAST tRNA (guanosine(18)-2'-O)-methyltransferase OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TRM3 PE=1
SV=1
Length = 1436
Score = 32.0 bits (71), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 16 VASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCLTLHNNEGSYLAHTQG 75
+++W N + L + +E L+K +F + + +YEC+ T+ N L+ +
Sbjct: 656 ISTWKSINVNN---LFKSVMEKFSLDKFKFFAEIYQKTYECRFD-TIELNFNDLLSLYEM 711
Query: 76 KKHQANLARRAAKEAKDAPQQSCDELLLT 104
K AN R + + KD+ S ELL T
Sbjct: 712 VKKSANQCSRESFKVKDSAYSSYFELLNT 740
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 113,568,567
Number of Sequences: 539616
Number of extensions: 4773373
Number of successful extensions: 11311
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 11273
Number of HSP's gapped (non-prelim): 35
length of query: 280
length of database: 191,569,459
effective HSP length: 116
effective length of query: 164
effective length of database: 128,974,003
effective search space: 21151736492
effective search space used: 21151736492
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)