RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9880
         (280 letters)



>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 67

 Score = 31.6 bits (72), Expect = 0.013
 Identities = 10/56 (17%), Positives = 18/56 (32%), Gaps = 5/56 (8%)

Query: 39 DLNKDPYFMKNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAP 94
          D N +        G + C  C     +  +   H + K H     ++  K+    P
Sbjct: 1  DPNAEFDPDLPGGGLHRCLACARYFIDSTNLKTHFRSKDH-----KKRLKQLSVEP 51


>d1zu1a2 g.37.1.4 (A:74-128) dsRNA-binding protein ZFa (ZNF346,
          JAZ) {African clawed frog (Xenopus laevis) [TaxId:
          8355]}
          Length = 55

 Score = 31.0 bits (70), Expect = 0.018
 Identities = 9/30 (30%), Positives = 13/30 (43%)

Query: 56 CKLCLTLHNNEGSYLAHTQGKKHQANLARR 85
          C +C    ++     +H  GK H  NL  R
Sbjct: 24 CPVCNMTFSSPVVAESHYIGKTHIKNLRLR 53


>d1zu1a1 g.37.1.4 (A:2-73) dsRNA-binding protein ZFa (ZNF346, JAZ)
          {African clawed frog (Xenopus laevis) [TaxId: 8355]}
          Length = 72

 Score = 28.8 bits (64), Expect = 0.17
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 56 CKLCLTLHNNEGSYLAHTQGKKHQANLAR 84
          CK+C  +  +E   LAH Q +KH   + R
Sbjct: 35 CKVCSAVLISESQKLAHYQSRKHANKVRR 63


>d2dk4a1 a.140.6.1 (A:8-70) Pre-mRNA-splicing factor 18 {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 63

 Score = 27.9 bits (62), Expect = 0.22
 Identities = 8/22 (36%), Positives = 16/22 (72%)

Query: 21 ESNRDRRERLRQLALETIDLNK 42
          E++ D  +RLR++ + T ++NK
Sbjct: 41 ETDYDAFQRLRKIEILTPEVNK 62


>d2vrda1 g.37.1.4 (A:1-61) Spliceosomal protein U1C {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 61

 Score = 25.5 bits (56), Expect = 1.9
 Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 54  YECKLCLT--LHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQSCDE 100
           + C  C T   H++      H  G+KH+ N+     K  ++  Q   D+
Sbjct: 4   FYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDK 52


>d3c8ya1 c.96.1.1 (A:210-574) Fe-only hydrogenase, catalytic domain
           {Clostridium pasteurianum [TaxId: 1501]}
          Length = 365

 Score = 26.1 bits (57), Expect = 5.4
 Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 2/39 (5%)

Query: 7   PGGKTGGGGVASWSESNRDRRE--RLRQLALETIDLNKD 43
            GG   GGG    +  + ++ +  ++R   L   D +  
Sbjct: 291 HGGCVNGGGQPHVNPKDLEKVDIKKVRASVLYNQDEHLS 329


>d1i0da_ c.1.9.3 (A:) Phosphotriesterase (parathion hydrolase, PTE)
           {Pseudomonas diminuta [TaxId: 293]}
          Length = 331

 Score = 25.5 bits (54), Expect = 7.9
 Identities = 6/33 (18%), Positives = 9/33 (27%), Gaps = 1/33 (3%)

Query: 113 DSILISTLDWGPPAPEKPRVEPKKFVKIGRPGY 145
             IL+S  DW                ++   G 
Sbjct: 260 KQILVSN-DWLFGFSSYVTNIMDVMDRVNPDGM 291


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.135    0.412 

Gapped
Lambda     K      H
   0.267   0.0557    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,059,002
Number of extensions: 49031
Number of successful extensions: 90
Number of sequences better than 10.0: 1
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 7
Length of query: 280
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 196
Effective length of database: 1,254,276
Effective search space: 245838096
Effective search space used: 245838096
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.2 bits)