Query psy9882
Match_columns 81
No_of_seqs 138 out of 1250
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 22:03:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9882.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9882hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15113 glutathione S-transfe 99.7 5.3E-16 1.2E-20 100.2 7.6 57 2-59 49-111 (214)
2 PRK09481 sspA stringent starva 99.6 2.7E-15 5.8E-20 96.8 7.3 57 2-59 49-108 (211)
3 PLN02395 glutathione S-transfe 99.6 3.2E-15 7E-20 96.0 7.6 58 2-60 43-105 (215)
4 PLN02473 glutathione S-transfe 99.6 5.9E-15 1.3E-19 94.8 8.1 59 3-62 45-108 (214)
5 KOG1695|consensus 99.6 7E-15 1.5E-19 95.6 7.9 60 4-64 44-103 (206)
6 KOG0867|consensus 99.6 4.3E-15 9.2E-20 97.4 6.1 61 2-63 44-109 (226)
7 PRK13972 GSH-dependent disulfi 99.6 6.6E-15 1.4E-19 95.0 6.2 60 2-62 42-109 (215)
8 COG0625 Gst Glutathione S-tran 99.5 1.7E-14 3.6E-19 92.8 6.8 60 2-62 41-107 (211)
9 PRK11752 putative S-transferas 99.5 3.6E-14 7.9E-19 94.7 6.8 57 2-59 91-152 (264)
10 TIGR01262 maiA maleylacetoacet 99.5 6.9E-14 1.5E-18 89.5 7.3 56 2-58 42-100 (210)
11 PRK10542 glutathionine S-trans 99.5 5E-14 1.1E-18 89.6 6.5 57 2-59 42-103 (201)
12 PRK10357 putative glutathione 99.5 3.2E-13 6.9E-18 86.1 8.0 59 3-62 40-102 (202)
13 PTZ00057 glutathione s-transfe 99.4 7.3E-13 1.6E-17 85.1 8.4 56 5-61 52-107 (205)
14 KOG0868|consensus 99.4 1E-12 2.2E-17 83.9 7.1 56 2-58 48-106 (217)
15 KOG0406|consensus 99.3 6.8E-12 1.5E-16 82.7 7.8 58 3-61 49-111 (231)
16 PLN02378 glutathione S-transfe 99.3 1.4E-11 3E-16 79.7 7.0 53 2-55 50-103 (213)
17 cd03046 GST_N_GTT1_like GST_N 99.3 5.5E-12 1.2E-16 69.2 4.2 36 2-37 41-76 (76)
18 cd03077 GST_N_Alpha GST_N fami 99.3 8.8E-12 1.9E-16 69.7 4.8 33 7-39 47-79 (79)
19 cd03050 GST_N_Theta GST_N fami 99.3 4.8E-12 1E-16 69.8 3.5 35 2-36 42-76 (76)
20 cd03076 GST_N_Pi GST_N family, 99.3 6.8E-12 1.5E-16 69.0 3.9 33 3-35 41-73 (73)
21 PF02798 GST_N: Glutathione S- 99.2 7.3E-12 1.6E-16 69.6 3.5 33 2-34 42-76 (76)
22 cd03057 GST_N_Beta GST_N famil 99.2 9.1E-12 2E-16 68.8 3.5 35 2-36 41-76 (77)
23 cd03075 GST_N_Mu GST_N family, 99.2 1.3E-11 2.9E-16 69.5 4.2 30 7-36 53-82 (82)
24 cd03048 GST_N_Ure2p_like GST_N 99.2 1.1E-11 2.3E-16 69.2 3.7 36 2-37 42-80 (81)
25 cd03059 GST_N_SspA GST_N famil 99.2 1.4E-11 3.1E-16 67.0 3.8 35 2-36 39-73 (73)
26 cd03039 GST_N_Sigma_like GST_N 99.2 2.5E-11 5.3E-16 66.3 3.7 33 2-34 40-72 (72)
27 cd03052 GST_N_GDAP1 GST_N fami 99.2 1.4E-11 3.1E-16 68.0 2.7 31 3-33 43-73 (73)
28 cd03045 GST_N_Delta_Epsilon GS 99.2 2E-11 4.4E-16 66.7 3.2 33 2-34 42-74 (74)
29 cd03053 GST_N_Phi GST_N family 99.2 2.3E-11 4.9E-16 66.9 3.4 34 2-35 43-76 (76)
30 cd03080 GST_N_Metaxin_like GST 99.2 5.5E-11 1.2E-15 65.6 4.7 35 3-37 41-75 (75)
31 cd03047 GST_N_2 GST_N family, 99.2 2.1E-11 4.5E-16 66.8 2.9 32 2-33 42-73 (73)
32 PLN02817 glutathione dehydroge 99.2 8.9E-11 1.9E-15 78.8 6.1 53 2-55 103-156 (265)
33 cd03061 GST_N_CLIC GST_N famil 99.1 5E-11 1.1E-15 68.8 3.7 34 3-36 53-86 (91)
34 TIGR00862 O-ClC intracellular 99.1 2.4E-10 5.2E-15 75.7 7.0 36 2-37 49-84 (236)
35 cd03043 GST_N_1 GST_N family, 99.1 4.8E-11 1E-15 65.7 2.9 32 2-33 42-73 (73)
36 cd03044 GST_N_EF1Bgamma GST_N 99.1 5.1E-11 1.1E-15 65.7 2.7 33 2-34 41-74 (75)
37 cd03058 GST_N_Tau GST_N family 99.1 9.6E-11 2.1E-15 64.2 3.7 35 2-36 39-74 (74)
38 PF13417 GST_N_3: Glutathione 99.1 1E-10 2.2E-15 64.6 3.6 35 3-37 38-72 (75)
39 PF13409 GST_N_2: Glutathione 99.1 1E-10 2.2E-15 64.0 3.5 34 2-35 36-70 (70)
40 PRK10387 glutaredoxin 2; Provi 99.1 2.5E-10 5.5E-15 72.9 5.8 56 4-62 40-98 (210)
41 cd03041 GST_N_2GST_N GST_N fam 99.1 1.4E-10 3E-15 64.3 3.3 35 2-36 41-77 (77)
42 TIGR02182 GRXB Glutaredoxin, G 99.1 4.1E-10 8.8E-15 72.7 5.8 57 3-62 38-97 (209)
43 cd03038 GST_N_etherase_LigE GS 99.1 2.4E-10 5.2E-15 64.2 4.0 33 5-37 51-84 (84)
44 cd03056 GST_N_4 GST_N family, 99.0 1.5E-10 3.2E-15 62.8 2.8 31 3-33 43-73 (73)
45 cd03042 GST_N_Zeta GST_N famil 99.0 2E-10 4.2E-15 62.4 2.8 32 2-33 42-73 (73)
46 PLN02907 glutamate-tRNA ligase 99.0 2.3E-09 5E-14 80.2 6.9 53 6-59 32-88 (722)
47 cd03060 GST_N_Omega_like GST_N 99.0 5.4E-10 1.2E-14 60.9 2.7 31 2-32 39-70 (71)
48 cd03049 GST_N_3 GST_N family, 98.9 6.4E-10 1.4E-14 60.7 2.0 32 2-33 41-73 (73)
49 cd03079 GST_N_Metaxin2 GST_N f 98.8 4.5E-09 9.8E-14 58.5 3.9 30 6-35 45-74 (74)
50 cd03051 GST_N_GTT2_like GST_N 98.8 1.8E-09 4E-14 58.4 2.2 31 3-33 43-74 (74)
51 cd03055 GST_N_Omega GST_N fami 98.8 3.9E-09 8.6E-14 60.0 2.7 31 3-33 58-89 (89)
52 cd03054 GST_N_Metaxin GST_N fa 98.7 1.4E-08 3.1E-13 55.3 3.9 31 5-35 42-72 (72)
53 cd03037 GST_N_GRX2 GST_N famil 98.7 8.3E-09 1.8E-13 56.0 2.9 31 4-34 40-71 (71)
54 cd03040 GST_N_mPGES2 GST_N fam 98.7 2.7E-08 5.8E-13 54.7 4.0 32 5-36 41-76 (77)
55 cd00570 GST_N_family Glutathio 98.7 2.1E-08 4.6E-13 52.7 3.0 31 3-33 41-71 (71)
56 cd03078 GST_N_Metaxin1_like GS 98.0 1E-05 2.2E-10 44.6 4.1 30 6-35 43-72 (73)
57 KOG4420|consensus 97.9 1.1E-05 2.4E-10 54.6 3.5 40 2-41 68-111 (325)
58 COG2999 GrxB Glutaredoxin 2 [P 97.1 0.00077 1.7E-08 43.6 3.6 51 9-63 45-99 (215)
59 PF10568 Tom37: Outer mitochon 97.0 0.0013 2.9E-08 36.2 3.7 27 6-32 44-71 (72)
60 cd03200 GST_C_JTV1 GST_C famil 96.1 0.0088 1.9E-07 34.2 3.2 31 29-60 1-32 (96)
61 KOG4244|consensus 96.1 0.061 1.3E-06 36.7 7.6 53 5-58 87-140 (281)
62 KOG1422|consensus 95.6 0.086 1.9E-06 34.8 6.6 36 2-37 51-86 (221)
63 PF09635 MetRS-N: MetRS-N bind 95.5 0.0077 1.7E-07 36.5 1.5 32 5-36 29-62 (122)
64 TIGR02190 GlrX-dom Glutaredoxi 94.7 0.029 6.3E-07 30.8 2.2 29 5-33 51-79 (79)
65 KOG3027|consensus 94.7 0.2 4.3E-06 33.3 6.2 56 6-62 62-119 (257)
66 PF11287 DUF3088: Protein of u 92.7 0.24 5.1E-06 29.6 3.7 31 9-39 66-110 (112)
67 TIGR02196 GlrX_YruB Glutaredox 91.8 0.21 4.5E-06 25.9 2.5 29 4-32 43-73 (74)
68 cd03029 GRX_hybridPRX5 Glutare 90.6 0.32 6.9E-06 25.9 2.5 27 7-33 46-72 (72)
69 KOG3029|consensus 89.8 0.56 1.2E-05 32.6 3.6 26 9-34 134-159 (370)
70 KOG3028|consensus 89.5 3.8 8.3E-05 28.6 7.5 57 6-63 44-105 (313)
71 PRK10638 glutaredoxin 3; Provi 88.3 0.74 1.6E-05 25.2 3.0 32 3-34 44-75 (83)
72 cd02976 NrdH NrdH-redoxin (Nrd 86.6 0.54 1.2E-05 24.2 1.7 22 3-24 42-63 (73)
73 cd02066 GRX_family Glutaredoxi 85.9 1 2.2E-05 22.9 2.5 27 4-30 43-69 (72)
74 COG0435 ECM4 Predicted glutath 83.8 2.1 4.5E-05 29.8 3.8 48 11-61 129-187 (324)
75 KOG2903|consensus 82.9 1 2.3E-05 31.0 2.1 49 11-62 123-186 (319)
76 PRK11200 grxA glutaredoxin 1; 80.0 5.1 0.00011 21.9 4.0 29 10-38 57-85 (85)
77 PF09098 Dehyd-heme_bind: Quin 77.8 1.7 3.6E-05 27.8 1.6 18 24-41 55-72 (167)
78 TIGR02183 GRXA Glutaredoxin, G 77.6 5.4 0.00012 22.0 3.6 29 10-38 56-84 (86)
79 cd03189 GST_C_GTT1_like GST_C 70.3 13 0.00029 21.0 4.2 23 40-63 2-24 (119)
80 TIGR02681 phage_pRha phage reg 61.0 12 0.00027 21.9 2.8 26 12-37 2-28 (108)
81 cd03027 GRX_DEP Glutaredoxin ( 56.2 15 0.00033 19.2 2.4 23 3-25 43-65 (73)
82 PF10850 DUF2653: Protein of u 55.8 13 0.00028 21.4 2.2 17 25-41 11-27 (91)
83 PF09314 DUF1972: Domain of un 54.9 14 0.00031 23.8 2.5 20 18-37 154-173 (185)
84 PF10022 DUF2264: Uncharacteri 52.6 22 0.00047 25.3 3.3 64 16-80 102-171 (361)
85 TIGR02200 GlrX_actino Glutared 52.5 6.1 0.00013 20.5 0.5 21 5-25 44-66 (77)
86 cd03182 GST_C_GTT2_like GST_C 48.7 36 0.00077 19.0 3.4 20 42-62 1-20 (117)
87 cd03418 GRX_GRXb_1_3_like Glut 47.9 27 0.00058 18.0 2.6 22 11-32 51-72 (75)
88 cd03196 GST_C_5 GST_C family, 46.0 23 0.00049 20.4 2.3 21 42-63 3-23 (115)
89 TIGR01764 excise DNA binding d 41.3 41 0.00088 15.6 3.4 25 9-33 24-48 (49)
90 PF04564 U-box: U-box domain; 41.2 58 0.0013 17.4 3.9 25 11-36 15-39 (73)
91 cd03419 GRX_GRXh_1_2_like Glut 40.1 47 0.001 17.3 2.8 28 7-34 49-76 (82)
92 TIGR02180 GRX_euk Glutaredoxin 39.1 51 0.0011 17.2 2.9 25 9-33 52-76 (84)
93 TIGR02181 GRX_bact Glutaredoxi 38.9 46 0.001 17.5 2.7 29 6-34 44-72 (79)
94 PF14420 Clr5: Clr5 domain 38.6 50 0.0011 16.7 2.6 27 26-53 24-50 (54)
95 cd03190 GST_C_ECM4_like GST_C 38.1 50 0.0011 19.7 3.0 18 47-64 5-22 (142)
96 PRK10329 glutaredoxin-like pro 37.8 45 0.00097 18.2 2.5 16 7-22 46-61 (81)
97 cd03191 GST_C_Zeta GST_C famil 36.4 55 0.0012 18.5 2.9 13 47-59 4-16 (121)
98 cd03187 GST_C_Phi GST_C family 33.6 89 0.0019 17.3 3.8 13 47-59 3-15 (118)
99 PF12728 HTH_17: Helix-turn-he 32.1 67 0.0015 15.5 3.7 26 9-34 24-49 (51)
100 cd03203 GST_C_Lambda GST_C fam 30.1 1.1E+02 0.0025 17.5 3.7 15 42-57 1-15 (120)
101 PF12622 NpwBP: mRNA biogenesi 29.5 31 0.00067 17.4 0.9 10 5-14 10-19 (48)
102 COG0695 GrxC Glutaredoxin and 29.1 90 0.002 16.9 2.8 19 6-24 48-66 (80)
103 KOG2828|consensus 28.7 20 0.00043 26.1 0.1 55 12-70 387-444 (454)
104 PF11588 DUF3243: Protein of u 28.2 88 0.0019 17.6 2.7 30 26-58 36-65 (81)
105 cd03192 GST_C_Sigma_like GST_C 27.8 88 0.0019 17.0 2.7 17 47-63 3-19 (104)
106 cd03186 GST_C_SspA GST_N famil 27.7 86 0.0019 17.2 2.7 18 44-62 2-19 (107)
107 cd03185 GST_C_Tau GST_C family 26.4 1E+02 0.0022 17.3 2.9 16 47-62 4-19 (126)
108 PF04358 DsrC: DsrC like prote 24.7 1.6E+02 0.0034 17.3 4.1 43 25-73 24-66 (109)
109 TIGR03342 dsrC_tusE_dsvC sulfu 23.2 1.7E+02 0.0038 17.2 4.4 34 25-64 23-56 (108)
110 PRK10667 Hha toxicity attenuat 22.9 1.4E+02 0.003 18.1 2.9 29 28-57 76-104 (122)
111 cd03188 GST_C_Beta GST_C famil 20.6 1E+02 0.0022 16.9 2.1 16 47-62 3-18 (114)
112 PF10757 YbaJ: Biofilm formati 20.2 1.6E+02 0.0034 17.9 2.8 14 28-41 76-89 (122)
No 1
>PRK15113 glutathione S-transferase; Provisional
Probab=99.65 E-value=5.3e-16 Score=100.19 Aligned_cols=57 Identities=19% Similarity=0.247 Sum_probs=52.5
Q ss_pred cccccCCCCCCcEEEeCCeEeecHHHHHHHHHHhcC------CCCCCHHHHHHHHHHHHHHHHH
Q psy9882 2 TTVNHYPFGKVPCIEINGVQYHQSRAIGRYLARQAG------LYGMDGPEMDMKIDMIVDTIDD 59 (81)
Q Consensus 2 ~~~~~~P~gkvP~L~~~~~~l~eS~aI~~yL~~~~~------l~~~~~~e~~a~v~~~~~~~~d 59 (81)
.|+++||+|+||+|++||.+|+||.||++||+++++ ++|.++.+ ++++++|+.+.+.
T Consensus 49 ~~~~~nP~g~VP~L~~~~~~l~ES~aI~~YL~~~~~~~~~~~l~p~~~~~-ra~~~~~~~~~~~ 111 (214)
T PRK15113 49 TYQGYSLTRRVPTLQHDDFELSESSAIAEYLEERFAPPAWERIYPADLQA-RARARQIQAWLRS 111 (214)
T ss_pred HHHhcCCCCCCCEEEECCEEEecHHHHHHHHHHHcCCCCccccCCCCHHH-HHHHHHHHHHHHh
Confidence 378899999999999999999999999999999984 88999989 9999999998863
No 2
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=99.61 E-value=2.7e-15 Score=96.75 Aligned_cols=57 Identities=18% Similarity=0.262 Sum_probs=51.4
Q ss_pred cccccCCCCCCcEEEeCCeEeecHHHHHHHHHHhcC---CCCCCHHHHHHHHHHHHHHHHH
Q psy9882 2 TTVNHYPFGKVPCIEINGVQYHQSRAIGRYLARQAG---LYGMDGPEMDMKIDMIVDTIDD 59 (81)
Q Consensus 2 ~~~~~~P~gkvP~L~~~~~~l~eS~aI~~yL~~~~~---l~~~~~~e~~a~v~~~~~~~~d 59 (81)
.|+++||+|+||+|+++|..|+||.||++||+++++ |.|.++.+ ++++.+|+.++.+
T Consensus 49 ~~~~~nP~g~VPvL~~~g~~l~ES~AIl~YL~~~~~~~~l~p~~~~~-ra~~~~~~~~~~~ 108 (211)
T PRK09481 49 DLIDLNPYQSVPTLVDRELTLYESRIIMEYLDERFPHPPLMPVYPVA-RGESRLMMHRIEK 108 (211)
T ss_pred HHHHhCCCCCCCEEEECCEEeeCHHHHHHHHHHhCCCCCCCCCCHHH-HHHHHHHHHHHHH
Confidence 478999999999999999999999999999999984 88888888 9999999877653
No 3
>PLN02395 glutathione S-transferase
Probab=99.61 E-value=3.2e-15 Score=96.03 Aligned_cols=58 Identities=29% Similarity=0.355 Sum_probs=52.1
Q ss_pred cccccCCCCCCcEEEeCCeEeecHHHHHHHHHHhc-----CCCCCCHHHHHHHHHHHHHHHHHH
Q psy9882 2 TTVNHYPFGKVPCIEINGVQYHQSRAIGRYLARQA-----GLYGMDGPEMDMKIDMIVDTIDDM 60 (81)
Q Consensus 2 ~~~~~~P~gkvP~L~~~~~~l~eS~aI~~yL~~~~-----~l~~~~~~e~~a~v~~~~~~~~d~ 60 (81)
+|+++||+||||+|+++|..|+||.||++||++++ ++.|.++.+ ++++++|+.+.+..
T Consensus 43 ~~~~~nP~g~vP~L~~~~~~l~ES~aI~~YL~~~~~~~~~~l~p~~~~~-~~~~~~~~~~~~~~ 105 (215)
T PLN02395 43 EYLALQPFGVVPVIVDGDYKIFESRAIMRYYAEKYRSQGPDLLGKTIEE-RGQVEQWLDVEATS 105 (215)
T ss_pred HHHhhCCCCCCCEEEECCEEEEcHHHHHHHHHHHcCCCCcCcCCCChhH-HHHHHHHHHHHHHh
Confidence 47889999999999999999999999999999987 388988888 99999999987643
No 4
>PLN02473 glutathione S-transferase
Probab=99.60 E-value=5.9e-15 Score=94.84 Aligned_cols=59 Identities=31% Similarity=0.442 Sum_probs=52.7
Q ss_pred ccccCCCCCCcEEEeCCeEeecHHHHHHHHHHhc-----CCCCCCHHHHHHHHHHHHHHHHHHhh
Q psy9882 3 TVNHYPFGKVPCIEINGVQYHQSRAIGRYLARQA-----GLYGMDGPEMDMKIDMIVDTIDDMRQ 62 (81)
Q Consensus 3 ~~~~~P~gkvP~L~~~~~~l~eS~aI~~yL~~~~-----~l~~~~~~e~~a~v~~~~~~~~d~~~ 62 (81)
|+++||+|+||+|+++|..|+||.||++||++++ +|.|.++.+ ++++++|+.+..+.+.
T Consensus 45 ~~~~nP~g~vP~L~~~g~~l~ES~aI~~YL~~~~~~~~~~l~p~~~~~-ra~~~~~~~~~~~~~~ 108 (214)
T PLN02473 45 HLLRQPFGQVPAIEDGDLKLFESRAIARYYATKYADQGTDLLGKTLEH-RAIVDQWVEVENNYFY 108 (214)
T ss_pred HHhhCCCCCCCeEEECCEEEEehHHHHHHHHHHcCCcCCCCCCCCHHH-HHHHHHHHHHHHhccc
Confidence 5678999999999999999999999999999998 388888888 9999999988877654
No 5
>KOG1695|consensus
Probab=99.59 E-value=7e-15 Score=95.60 Aligned_cols=60 Identities=45% Similarity=0.717 Sum_probs=56.2
Q ss_pred cccCCCCCCcEEEeCCeEeecHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHhhhh
Q psy9882 4 VNHYPFGKVPCIEINGVQYHQSRAIGRYLARQAGLYGMDGPEMDMKIDMIVDTIDDMRQGK 64 (81)
Q Consensus 4 ~~~~P~gkvP~L~~~~~~l~eS~aI~~yL~~~~~l~~~~~~e~~a~v~~~~~~~~d~~~~~ 64 (81)
+...|+||+|+|..||..|.||.||+|||+++||+.|+++.| .+.++.+.+...|++..+
T Consensus 44 K~~~pfgqlP~l~vDg~~i~QS~AI~RyLArk~gl~Gkt~~E-~a~vD~i~d~~~D~~~~~ 103 (206)
T KOG1695|consen 44 KDKMPFGQLPVLEVDGKKLVQSRAILRYLARKFGLAGKTEEE-EAWVDMIVDQFKDFRWEI 103 (206)
T ss_pred cccCCCCCCCEEeECCEeeccHHHHHHHHHHHhCcCCCCHHH-HHHHHHHHHhhhhHHHHH
Confidence 456899999999999999999999999999999999999999 999999999999988873
No 6
>KOG0867|consensus
Probab=99.58 E-value=4.3e-15 Score=97.44 Aligned_cols=61 Identities=31% Similarity=0.422 Sum_probs=55.5
Q ss_pred cccccCCCCCCcEEEeCCeEeecHHHHHHHHHHhcC-----CCCCCHHHHHHHHHHHHHHHHHHhhh
Q psy9882 2 TTVNHYPFGKVPCIEINGVQYHQSRAIGRYLARQAG-----LYGMDGPEMDMKIDMIVDTIDDMRQG 63 (81)
Q Consensus 2 ~~~~~~P~gkvP~L~~~~~~l~eS~aI~~yL~~~~~-----l~~~~~~e~~a~v~~~~~~~~d~~~~ 63 (81)
+|+++||+|+||+|+|+|..++||+||++||+++|+ ++|.+..+ ++.+++|+++..+.+..
T Consensus 44 efl~~nP~~kVP~l~d~~~~l~eS~AI~~Yl~~ky~~~~~~l~p~~~~~-ra~v~~~l~~~~~~l~~ 109 (226)
T KOG0867|consen 44 EFLKLNPLGKVPALEDGGLTLWESHAILRYLAEKYGPLGGILLPKDLKE-RAIVDQWLEFENGVLDP 109 (226)
T ss_pred HHHhcCcCCCCCeEecCCeEEeeHHHHHHHHHHHcCCCCcccCCcCHHH-HHHHHHHHHhhhccccc
Confidence 588999999999999999999999999999999985 88899988 99999999888766554
No 7
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=99.57 E-value=6.6e-15 Score=94.98 Aligned_cols=60 Identities=22% Similarity=0.153 Sum_probs=50.8
Q ss_pred cccccCCCCCCcEEEe-----CC--eEeecHHHHHHHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHhh
Q psy9882 2 TTVNHYPFGKVPCIEI-----NG--VQYHQSRAIGRYLARQAG-LYGMDGPEMDMKIDMIVDTIDDMRQ 62 (81)
Q Consensus 2 ~~~~~~P~gkvP~L~~-----~~--~~l~eS~aI~~yL~~~~~-l~~~~~~e~~a~v~~~~~~~~d~~~ 62 (81)
.|+++||+||||+|++ || .+|+||.||++||+++++ +.|.++.+ ++++.+|+.|....+.
T Consensus 42 ~~~~iNP~gkVP~L~~~~~~d~g~~~~L~ES~AI~~YL~~~~~~l~p~~~~~-ra~~~~~~~~~~~~~~ 109 (215)
T PRK13972 42 EFLRISPNNKIPAIVDHSPADGGEPLSLFESGAILLYLAEKTGLFLSHETRE-RAATLQWLFWQVGGLG 109 (215)
T ss_pred HHHhhCcCCCCCEEEeCCCCCCCCceeEEcHHHHHHHHHHhcCCCCCCCHHH-HHHHHHHHHHHhhccC
Confidence 4789999999999997 45 579999999999999997 56677888 9999999988764433
No 8
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=1.7e-14 Score=92.76 Aligned_cols=60 Identities=22% Similarity=0.139 Sum_probs=51.3
Q ss_pred cccccCCCCCCcEEEeCCe-EeecHHHHHHHHHHhcC---CCCCCHH---HHHHHHHHHHHHHHHHhh
Q psy9882 2 TTVNHYPFGKVPCIEINGV-QYHQSRAIGRYLARQAG---LYGMDGP---EMDMKIDMIVDTIDDMRQ 62 (81)
Q Consensus 2 ~~~~~~P~gkvP~L~~~~~-~l~eS~aI~~yL~~~~~---l~~~~~~---e~~a~v~~~~~~~~d~~~ 62 (81)
.|+++||+||||+|+++|. +|+||.||++||+++|+ +.|.++. + ++.+..|..+......
T Consensus 41 ~~~~~nP~gkVPvL~~~~~~~l~ES~AI~~YL~~~~~~~~l~p~~~~~r~~-r~~~~~~~~~~~~~~~ 107 (211)
T COG0625 41 DFLALNPLGKVPALVDDDGEVLTESGAILEYLAERYPGPPLLPADPLARRA-RALLLWWLFFAASDLH 107 (211)
T ss_pred HHHhcCCCCCCCEEeeCCCCeeecHHHHHHHHHhhCCCCCcCCCCchhHHH-HHHHHHHHHHHHhccc
Confidence 3789999999999998765 89999999999999996 9998874 6 8888899888854433
No 9
>PRK11752 putative S-transferase; Provisional
Probab=99.52 E-value=3.6e-14 Score=94.72 Aligned_cols=57 Identities=21% Similarity=0.133 Sum_probs=50.9
Q ss_pred cccccCCCCCCcEEEeC----CeEeecHHHHHHHHHHhcC-CCCCCHHHHHHHHHHHHHHHHH
Q psy9882 2 TTVNHYPFGKVPCIEIN----GVQYHQSRAIGRYLARQAG-LYGMDGPEMDMKIDMIVDTIDD 59 (81)
Q Consensus 2 ~~~~~~P~gkvP~L~~~----~~~l~eS~aI~~yL~~~~~-l~~~~~~e~~a~v~~~~~~~~d 59 (81)
.|+++||+||||+|+++ +++|+||.||++||+++++ |.|.++.+ ++++++|+.+...
T Consensus 91 e~~~iNP~GkVP~Lv~~dg~~~~~L~ES~AIl~YL~~~~~~L~P~~~~e-ra~v~~wl~~~~~ 152 (264)
T PRK11752 91 GFVEINPNSKIPALLDRSGNPPIRVFESGAILLYLAEKFGAFLPKDLAA-RTETLNWLFWQQG 152 (264)
T ss_pred HHHhhCCCCCCCEEEeCCCCCCeEEEcHHHHHHHHHHhcCCcCCCCHHH-HHHHHHHHHHHhh
Confidence 47899999999999984 3789999999999999997 99988888 9999999988754
No 10
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=99.51 E-value=6.9e-14 Score=89.45 Aligned_cols=56 Identities=27% Similarity=0.313 Sum_probs=51.3
Q ss_pred cccccCCCCCCcEEEeCCeEeecHHHHHHHHHHhc---CCCCCCHHHHHHHHHHHHHHHH
Q psy9882 2 TTVNHYPFGKVPCIEINGVQYHQSRAIGRYLARQA---GLYGMDGPEMDMKIDMIVDTID 58 (81)
Q Consensus 2 ~~~~~~P~gkvP~L~~~~~~l~eS~aI~~yL~~~~---~l~~~~~~e~~a~v~~~~~~~~ 58 (81)
+|+++||+|+||+|+++|..|+||.||++||++++ ++.|.++.+ ++++++|+.+..
T Consensus 42 ~~~~~nP~g~vP~L~~~g~~l~ES~aI~~yl~~~~~~~~l~p~~~~~-~a~~~~~~~~~~ 100 (210)
T TIGR01262 42 EFLALNPQGLVPTLDIDGEVLTQSLAIIEYLEETYPDPPLLPADPIK-RARVRALALLIA 100 (210)
T ss_pred hhhhcCCCCcCCEEEECCEEeecHHHHHHHHHHhCCCCCCCCCCHHH-HHHHHHHHHHHh
Confidence 47889999999999999999999999999999998 499988888 999999988875
No 11
>PRK10542 glutathionine S-transferase; Provisional
Probab=99.51 E-value=5e-14 Score=89.57 Aligned_cols=57 Identities=21% Similarity=0.275 Sum_probs=48.6
Q ss_pred cccccCCCCCCcEEEe-CCeEeecHHHHHHHHHHhcC---CC-CCCHHHHHHHHHHHHHHHHH
Q psy9882 2 TTVNHYPFGKVPCIEI-NGVQYHQSRAIGRYLARQAG---LY-GMDGPEMDMKIDMIVDTIDD 59 (81)
Q Consensus 2 ~~~~~~P~gkvP~L~~-~~~~l~eS~aI~~yL~~~~~---l~-~~~~~e~~a~v~~~~~~~~d 59 (81)
.|+++||+|+||+|++ ||.+|+||.||++||+++++ +. |.++.+ ++++.+|+.+..+
T Consensus 42 ~~~~~nP~g~vPvL~~~~g~~l~eS~aI~~YL~~~~~~~~l~~p~~~~~-ra~~~~~~~~~~~ 103 (201)
T PRK10542 42 DYLAINPKGQVPALLLDDGTLLTEGVAIMQYLADSVPDRQLLAPVGSLS-RYHTIEWLNYIAT 103 (201)
T ss_pred HHHHhCcCCCCCeEEeCCCcEeecHHHHHHHHHHhCcccccCCCCCcHH-HHHHHHHHHHHHh
Confidence 3789999999999984 78999999999999999985 44 566778 8999999887753
No 12
>PRK10357 putative glutathione S-transferase; Provisional
Probab=99.47 E-value=3.2e-13 Score=86.12 Aligned_cols=59 Identities=19% Similarity=0.314 Sum_probs=50.5
Q ss_pred ccccCCCCCCcEEE-eCCeEeecHHHHHHHHHHhcC---CCCCCHHHHHHHHHHHHHHHHHHhh
Q psy9882 3 TVNHYPFGKVPCIE-INGVQYHQSRAIGRYLARQAG---LYGMDGPEMDMKIDMIVDTIDDMRQ 62 (81)
Q Consensus 3 ~~~~~P~gkvP~L~-~~~~~l~eS~aI~~yL~~~~~---l~~~~~~e~~a~v~~~~~~~~d~~~ 62 (81)
+.+.||+|+||+|+ ++|.+|+||.||++||+++++ |.|.++.+ ++++++|..+..+...
T Consensus 40 ~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL~~~~~~~~l~p~~~~~-~a~~~~~~~~~~~~~~ 102 (202)
T PRK10357 40 VAQYNPLGKVPALVTEEGECWFDSPIIAEYIELLNVAPAMLPRDPLA-ALRVRQLEALADGIMD 102 (202)
T ss_pred hhhcCCccCCCeEEeCCCCeeecHHHHHHHHHHhCCCCCCCCCCHHH-HHHHHHHHHHHHHHHH
Confidence 56789999999998 578999999999999999873 88988888 8999999887665443
No 13
>PTZ00057 glutathione s-transferase; Provisional
Probab=99.45 E-value=7.3e-13 Score=85.13 Aligned_cols=56 Identities=30% Similarity=0.576 Sum_probs=45.1
Q ss_pred ccCCCCCCcEEEeCCeEeecHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHh
Q psy9882 5 NHYPFGKVPCIEINGVQYHQSRAIGRYLARQAGLYGMDGPEMDMKIDMIVDTIDDMR 61 (81)
Q Consensus 5 ~~~P~gkvP~L~~~~~~l~eS~aI~~yL~~~~~l~~~~~~e~~a~v~~~~~~~~d~~ 61 (81)
+.||+|+||+|++||.+|+||.||++||++++++.+.+..+ ++.++.......+++
T Consensus 52 ~~nP~g~vP~L~~~~~~l~eS~AI~~YLa~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 107 (205)
T PTZ00057 52 KDTPFEQVPILEMDNIIFAQSQAIVRYLSKKYKICGESELN-EFYADMIFCGVQDIH 107 (205)
T ss_pred CCCCCCCCCEEEECCEEEecHHHHHHHHHHHcCCCCCCHHH-HHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999988877666 566655544433433
No 14
>KOG0868|consensus
Probab=99.41 E-value=1e-12 Score=83.88 Aligned_cols=56 Identities=29% Similarity=0.293 Sum_probs=50.2
Q ss_pred cccccCCCCCCcEEEeCCeEeecHHHHHHHHHHhcC---CCCCCHHHHHHHHHHHHHHHH
Q psy9882 2 TTVNHYPFGKVPCIEINGVQYHQSRAIGRYLARQAG---LYGMDGPEMDMKIDMIVDTID 58 (81)
Q Consensus 2 ~~~~~~P~gkvP~L~~~~~~l~eS~aI~~yL~~~~~---l~~~~~~e~~a~v~~~~~~~~ 58 (81)
.|+++||++|||+|++||.+|+||.||++||+++++ |.|+|+.. |+.+++...-..
T Consensus 48 ef~~iNPm~kVP~L~i~g~tl~eS~AII~YLeEt~P~ppLLP~d~~K-RA~~r~i~~~i~ 106 (217)
T KOG0868|consen 48 EFKEINPMEKVPTLVIDGLTLTESLAIIEYLEETYPDPPLLPKDPHK-RAKARAISLLIA 106 (217)
T ss_pred HHhhcCchhhCCeEEECCEEeehHHHHHHHHHhcCCCCCCCCcCHHH-HHHHHHHHHHHH
Confidence 588999999999999999999999999999999994 99999988 888887765553
No 15
>KOG0406|consensus
Probab=99.34 E-value=6.8e-12 Score=82.73 Aligned_cols=58 Identities=22% Similarity=0.228 Sum_probs=53.0
Q ss_pred ccccC-CCCCCcEEEeCCeEeecHHHHHHHHHHhcC----CCCCCHHHHHHHHHHHHHHHHHHh
Q psy9882 3 TVNHY-PFGKVPCIEINGVQYHQSRAIGRYLARQAG----LYGMDGPEMDMKIDMIVDTIDDMR 61 (81)
Q Consensus 3 ~~~~~-P~gkvP~L~~~~~~l~eS~aI~~yL~~~~~----l~~~~~~e~~a~v~~~~~~~~d~~ 61 (81)
+++.| +.+|||||+++|..|+||..|++||++.+. ++|+|+.+ |+..+.|+++.++..
T Consensus 49 ll~~np~hkKVPvL~Hn~k~i~ESliiveYiDe~w~~~~~iLP~DPy~-Ra~arfwa~~id~~~ 111 (231)
T KOG0406|consen 49 LLEKNPVHKKVPVLEHNGKPICESLIIVEYIDETWPSGPPILPSDPYE-RAQARFWAEYIDKKV 111 (231)
T ss_pred HHHhccccccCCEEEECCceehhhHHHHHHHHhhccCCCCCCCCCHHH-HHHHHHHHHHHHhHH
Confidence 46778 899999999999999999999999999983 99999999 999999999998644
No 16
>PLN02378 glutathione S-transferase DHAR1
Probab=99.29 E-value=1.4e-11 Score=79.71 Aligned_cols=53 Identities=19% Similarity=0.068 Sum_probs=42.8
Q ss_pred cccccCCCCCCcEEEeCCeEeecHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHH
Q psy9882 2 TTVNHYPFGKVPCIEINGVQYHQSRAIGRYLARQAGLY-GMDGPEMDMKIDMIVD 55 (81)
Q Consensus 2 ~~~~~~P~gkvP~L~~~~~~l~eS~aI~~yL~~~~~l~-~~~~~e~~a~v~~~~~ 55 (81)
.|+++||+|+||+|+++|..|+||.||++||+++++-. ..++.+ ++.++.++.
T Consensus 50 ~~l~inP~G~VPvL~~~~~~l~ES~aI~~YL~~~~~~~~l~~~~~-~a~i~~~~~ 103 (213)
T PLN02378 50 WFLDISPQGKVPVLKIDDKWVTDSDVIVGILEEKYPDPPLKTPAE-FASVGSNIF 103 (213)
T ss_pred HHHHhCCCCCCCEEEECCEEecCHHHHHHHHHHhCCCCCCCCHHH-HHHHHHHHH
Confidence 47899999999999999999999999999999998521 145666 777665543
No 17
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=99.28 E-value=5.5e-12 Score=69.19 Aligned_cols=36 Identities=33% Similarity=0.440 Sum_probs=33.1
Q ss_pred cccccCCCCCCcEEEeCCeEeecHHHHHHHHHHhcC
Q psy9882 2 TTVNHYPFGKVPCIEINGVQYHQSRAIGRYLARQAG 37 (81)
Q Consensus 2 ~~~~~~P~gkvP~L~~~~~~l~eS~aI~~yL~~~~~ 37 (81)
+|++.||+|++|+|+++|..++||.||++||+++++
T Consensus 41 ~~~~~~p~~~vP~l~~~g~~l~es~aI~~yL~~~~~ 76 (76)
T cd03046 41 EYLAINPLGKVPVLVDGDLVLTESAAIILYLAEKYG 76 (76)
T ss_pred HHHhcCCCCCCCEEEECCEEEEcHHHHHHHHHHhCc
Confidence 467899999999999999999999999999999864
No 18
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=99.27 E-value=8.8e-12 Score=69.69 Aligned_cols=33 Identities=42% Similarity=0.712 Sum_probs=30.5
Q ss_pred CCCCCCcEEEeCCeEeecHHHHHHHHHHhcCCC
Q psy9882 7 YPFGKVPCIEINGVQYHQSRAIGRYLARQAGLY 39 (81)
Q Consensus 7 ~P~gkvP~L~~~~~~l~eS~aI~~yL~~~~~l~ 39 (81)
+|+|+||+|++||..|+||.||++||+++++++
T Consensus 47 ~~~g~vP~L~~~g~~l~ES~AI~~YL~~~~~~~ 79 (79)
T cd03077 47 LMFQQVPMVEIDGMKLVQTRAILNYIAGKYNLY 79 (79)
T ss_pred CCCCCCCEEEECCEEEeeHHHHHHHHHHHcCCC
Confidence 369999999999999999999999999999874
No 19
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=99.27 E-value=4.8e-12 Score=69.82 Aligned_cols=35 Identities=43% Similarity=0.514 Sum_probs=31.9
Q ss_pred cccccCCCCCCcEEEeCCeEeecHHHHHHHHHHhc
Q psy9882 2 TTVNHYPFGKVPCIEINGVQYHQSRAIGRYLARQA 36 (81)
Q Consensus 2 ~~~~~~P~gkvP~L~~~~~~l~eS~aI~~yL~~~~ 36 (81)
.|++.||+|+||+|+++|..++||.||++||+++|
T Consensus 42 ~~~~~~p~~~vP~L~~~~~~l~eS~aI~~Yl~~~~ 76 (76)
T cd03050 42 EFKKINPFGKVPAIVDGDFTLAESVAILRYLARKF 76 (76)
T ss_pred HHHHhCcCCCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 35688999999999999999999999999999874
No 20
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=99.26 E-value=6.8e-12 Score=69.03 Aligned_cols=33 Identities=33% Similarity=0.499 Sum_probs=30.8
Q ss_pred ccccCCCCCCcEEEeCCeEeecHHHHHHHHHHh
Q psy9882 3 TVNHYPFGKVPCIEINGVQYHQSRAIGRYLARQ 35 (81)
Q Consensus 3 ~~~~~P~gkvP~L~~~~~~l~eS~aI~~yL~~~ 35 (81)
|++.||+|+||+|+++|..++||.||++||+++
T Consensus 41 ~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~ 73 (73)
T cd03076 41 LKPKMLFGQLPCFKDGDLTLVQSNAILRHLGRK 73 (73)
T ss_pred hhccCCCCCCCEEEECCEEEEcHHHHHHHHhcC
Confidence 678999999999999999999999999999863
No 21
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=99.25 E-value=7.3e-12 Score=69.55 Aligned_cols=33 Identities=45% Similarity=0.645 Sum_probs=30.6
Q ss_pred cccccCCC-CCCcEEEeC-CeEeecHHHHHHHHHH
Q psy9882 2 TTVNHYPF-GKVPCIEIN-GVQYHQSRAIGRYLAR 34 (81)
Q Consensus 2 ~~~~~~P~-gkvP~L~~~-~~~l~eS~aI~~yL~~ 34 (81)
.|++.||+ ||||+|+++ |..++||.||++||++
T Consensus 42 e~~~~~p~~g~vP~l~~~~~~~l~es~AI~~YLa~ 76 (76)
T PF02798_consen 42 EFLAINPMFGKVPALEDGDGFVLTESNAILRYLAR 76 (76)
T ss_dssp HHHHHTTTSSSSSEEEETTTEEEESHHHHHHHHHH
T ss_pred hhhhcccccceeeEEEECCCCEEEcHHHHHHHhCC
Confidence 36789999 999999998 9999999999999985
No 22
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=99.23 E-value=9.1e-12 Score=68.76 Aligned_cols=35 Identities=31% Similarity=0.449 Sum_probs=31.9
Q ss_pred cccccCCCCCCcEEEeC-CeEeecHHHHHHHHHHhc
Q psy9882 2 TTVNHYPFGKVPCIEIN-GVQYHQSRAIGRYLARQA 36 (81)
Q Consensus 2 ~~~~~~P~gkvP~L~~~-~~~l~eS~aI~~yL~~~~ 36 (81)
+|++.||+|++|+|+++ |..++||.||++||++++
T Consensus 41 ~~~~~np~~~vP~l~~~~g~~l~eS~aI~~yL~~~~ 76 (77)
T cd03057 41 DYLAINPKGQVPALVLDDGEVLTESAAILQYLADLH 76 (77)
T ss_pred hHHHhCCCCCCCEEEECCCcEEEcHHHHHHHHHHhC
Confidence 46788999999999986 899999999999999876
No 23
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=99.23 E-value=1.3e-11 Score=69.49 Aligned_cols=30 Identities=37% Similarity=0.474 Sum_probs=28.0
Q ss_pred CCCCCCcEEEeCCeEeecHHHHHHHHHHhc
Q psy9882 7 YPFGKVPCIEINGVQYHQSRAIGRYLARQA 36 (81)
Q Consensus 7 ~P~gkvP~L~~~~~~l~eS~aI~~yL~~~~ 36 (81)
+|+|+||+|++||..|+||.||++||++++
T Consensus 53 ~P~g~vP~L~~~g~~l~ES~AIl~YLa~~~ 82 (82)
T cd03075 53 LDFPNLPYYIDGDVKLTQSNAILRYIARKH 82 (82)
T ss_pred CcCCCCCEEEECCEEEeehHHHHHHHhhcC
Confidence 399999999999999999999999999874
No 24
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=99.23 E-value=1.1e-11 Score=69.17 Aligned_cols=36 Identities=28% Similarity=0.343 Sum_probs=32.6
Q ss_pred cccccCCCCCCcEEEeC---CeEeecHHHHHHHHHHhcC
Q psy9882 2 TTVNHYPFGKVPCIEIN---GVQYHQSRAIGRYLARQAG 37 (81)
Q Consensus 2 ~~~~~~P~gkvP~L~~~---~~~l~eS~aI~~yL~~~~~ 37 (81)
.|++.||+|+||+|+++ |..|+||.||++||+++++
T Consensus 42 ~~~~~~p~~~vP~l~~~~~~g~~l~eS~aI~~yL~~~~~ 80 (81)
T cd03048 42 EFLKINPNGRIPAIVDHNGTPLTVFESGAILLYLAEKYD 80 (81)
T ss_pred HHHHhCcCCCCCEEEeCCCCceEEEcHHHHHHHHHHHhC
Confidence 36788999999999986 7999999999999999874
No 25
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.22 E-value=1.4e-11 Score=67.05 Aligned_cols=35 Identities=26% Similarity=0.398 Sum_probs=32.2
Q ss_pred cccccCCCCCCcEEEeCCeEeecHHHHHHHHHHhc
Q psy9882 2 TTVNHYPFGKVPCIEINGVQYHQSRAIGRYLARQA 36 (81)
Q Consensus 2 ~~~~~~P~gkvP~L~~~~~~l~eS~aI~~yL~~~~ 36 (81)
.|++.||+|++|+|+++|..++||.||++||++++
T Consensus 39 ~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~~ 73 (73)
T cd03059 39 DLAELNPYGTVPTLVDRDLVLYESRIIMEYLDERF 73 (73)
T ss_pred HHHhhCCCCCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 46789999999999999999999999999999874
No 26
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=99.19 E-value=2.5e-11 Score=66.31 Aligned_cols=33 Identities=48% Similarity=0.782 Sum_probs=30.5
Q ss_pred cccccCCCCCCcEEEeCCeEeecHHHHHHHHHH
Q psy9882 2 TTVNHYPFGKVPCIEINGVQYHQSRAIGRYLAR 34 (81)
Q Consensus 2 ~~~~~~P~gkvP~L~~~~~~l~eS~aI~~yL~~ 34 (81)
+|++.||+|++|+|+++|..++||.||++||++
T Consensus 40 ~~~~~~p~~~vP~L~~~~~~l~es~aI~~yL~~ 72 (72)
T cd03039 40 DLKPTLPFGQLPVLEIDGKKLTQSNAILRYLAR 72 (72)
T ss_pred hhccCCcCCCCCEEEECCEEEEecHHHHHHhhC
Confidence 378899999999999999999999999999974
No 27
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.18 E-value=1.4e-11 Score=67.97 Aligned_cols=31 Identities=23% Similarity=0.268 Sum_probs=29.3
Q ss_pred ccccCCCCCCcEEEeCCeEeecHHHHHHHHH
Q psy9882 3 TVNHYPFGKVPCIEINGVQYHQSRAIGRYLA 33 (81)
Q Consensus 3 ~~~~~P~gkvP~L~~~~~~l~eS~aI~~yL~ 33 (81)
|+++||.|+||+|+++|..|+||.||++||+
T Consensus 43 ~~~inP~g~vP~L~~~g~~l~Es~aI~~yLe 73 (73)
T cd03052 43 FMRLNPTGEVPVLIHGDNIICDPTQIIDYLE 73 (73)
T ss_pred HHHhCcCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 7789999999999999999999999999984
No 28
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=99.18 E-value=2e-11 Score=66.66 Aligned_cols=33 Identities=30% Similarity=0.334 Sum_probs=30.4
Q ss_pred cccccCCCCCCcEEEeCCeEeecHHHHHHHHHH
Q psy9882 2 TTVNHYPFGKVPCIEINGVQYHQSRAIGRYLAR 34 (81)
Q Consensus 2 ~~~~~~P~gkvP~L~~~~~~l~eS~aI~~yL~~ 34 (81)
.|++.||+|+||+|+++|..|+||.||++||++
T Consensus 42 ~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~ 74 (74)
T cd03045 42 EFLKLNPQHTVPTLVDNGFVLWESHAILIYLVE 74 (74)
T ss_pred HHHhhCcCCCCCEEEECCEEEEcHHHHHHHHhC
Confidence 367899999999999999999999999999974
No 29
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=99.18 E-value=2.3e-11 Score=66.87 Aligned_cols=34 Identities=38% Similarity=0.737 Sum_probs=31.2
Q ss_pred cccccCCCCCCcEEEeCCeEeecHHHHHHHHHHh
Q psy9882 2 TTVNHYPFGKVPCIEINGVQYHQSRAIGRYLARQ 35 (81)
Q Consensus 2 ~~~~~~P~gkvP~L~~~~~~l~eS~aI~~yL~~~ 35 (81)
.|++.||+|++|+|+++|..++||.||++||+++
T Consensus 43 ~~~~~~P~~~vP~l~~~g~~l~es~aI~~yL~~~ 76 (76)
T cd03053 43 EHLARNPFGQIPALEDGDLKLFESRAITRYLAEK 76 (76)
T ss_pred HHHhhCCCCCCCEEEECCEEEEcHHHHHHHHhhC
Confidence 3678999999999999999999999999999874
No 30
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=99.17 E-value=5.5e-11 Score=65.63 Aligned_cols=35 Identities=34% Similarity=0.472 Sum_probs=32.2
Q ss_pred ccccCCCCCCcEEEeCCeEeecHHHHHHHHHHhcC
Q psy9882 3 TVNHYPFGKVPCIEINGVQYHQSRAIGRYLARQAG 37 (81)
Q Consensus 3 ~~~~~P~gkvP~L~~~~~~l~eS~aI~~yL~~~~~ 37 (81)
+++.||.|++|+|+++|..++||.+|++||+++||
T Consensus 41 ~~~~~p~g~vPvl~~~g~~l~eS~~I~~yL~~~~~ 75 (75)
T cd03080 41 LAKRSPKGKLPFIELNGEKIADSELIIDHLEEKYG 75 (75)
T ss_pred cccCCCCCCCCEEEECCEEEcCHHHHHHHHHHHcC
Confidence 34789999999999999999999999999999875
No 31
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=99.17 E-value=2.1e-11 Score=66.85 Aligned_cols=32 Identities=38% Similarity=0.494 Sum_probs=29.6
Q ss_pred cccccCCCCCCcEEEeCCeEeecHHHHHHHHH
Q psy9882 2 TTVNHYPFGKVPCIEINGVQYHQSRAIGRYLA 33 (81)
Q Consensus 2 ~~~~~~P~gkvP~L~~~~~~l~eS~aI~~yL~ 33 (81)
.|++.||+|+||+|+++|..|+||.||++||+
T Consensus 42 ~~~~~nP~~~vP~L~~~~~~l~eS~aI~~YL~ 73 (73)
T cd03047 42 EFLAMNPNGRVPVLEDGDFVLWESNAILRYLA 73 (73)
T ss_pred HHHhhCCCCCCCEEEECCEEEECHHHHHHHhC
Confidence 36789999999999999999999999999985
No 32
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=99.16 E-value=8.9e-11 Score=78.78 Aligned_cols=53 Identities=19% Similarity=0.142 Sum_probs=43.5
Q ss_pred cccccCCCCCCcEEEeCCeEeecHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHH
Q psy9882 2 TTVNHYPFGKVPCIEINGVQYHQSRAIGRYLARQAGL-YGMDGPEMDMKIDMIVD 55 (81)
Q Consensus 2 ~~~~~~P~gkvP~L~~~~~~l~eS~aI~~yL~~~~~l-~~~~~~e~~a~v~~~~~ 55 (81)
.|+++||+|+||+|+++|..|+||.||++||+++++- ...++.+ ++.+.+|+.
T Consensus 103 ~fl~iNP~GkVPvL~~d~~~L~ES~aI~~YL~e~~p~~~L~~~~e-ra~i~~~l~ 156 (265)
T PLN02817 103 WFLKISPEGKVPVVKLDEKWVADSDVITQALEEKYPDPPLATPPE-KASVGSKIF 156 (265)
T ss_pred HHHhhCCCCCCCEEEECCEEEecHHHHHHHHHHHCCCCCCCCHHH-HHHHHHHHH
Confidence 3789999999999999889999999999999999851 1135667 788877653
No 33
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=99.14 E-value=5e-11 Score=68.79 Aligned_cols=34 Identities=18% Similarity=0.202 Sum_probs=32.3
Q ss_pred ccccCCCCCCcEEEeCCeEeecHHHHHHHHHHhc
Q psy9882 3 TVNHYPFGKVPCIEINGVQYHQSRAIGRYLARQA 36 (81)
Q Consensus 3 ~~~~~P~gkvP~L~~~~~~l~eS~aI~~yL~~~~ 36 (81)
|+++||+|+||+|+++|..|+||.+|++||++++
T Consensus 53 ~~~~nP~g~vPvL~~~~~~i~eS~~I~eYLde~~ 86 (91)
T cd03061 53 LKDLAPGTQPPFLLYNGEVKTDNNKIEEFLEETL 86 (91)
T ss_pred HHHhCCCCCCCEEEECCEEecCHHHHHHHHHHHc
Confidence 6789999999999999999999999999999986
No 34
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=99.13 E-value=2.4e-10 Score=75.71 Aligned_cols=36 Identities=17% Similarity=0.117 Sum_probs=33.7
Q ss_pred cccccCCCCCCcEEEeCCeEeecHHHHHHHHHHhcC
Q psy9882 2 TTVNHYPFGKVPCIEINGVQYHQSRAIGRYLARQAG 37 (81)
Q Consensus 2 ~~~~~~P~gkvP~L~~~~~~l~eS~aI~~yL~~~~~ 37 (81)
.|+++||+|+||+|+++|..|+||.||++||+++|+
T Consensus 49 ~fl~inP~g~vPvL~~~g~~l~ES~aI~eYL~e~~~ 84 (236)
T TIGR00862 49 DLQNLAPGTHPPFLTYNTEVKTDVNKIEEFLEETLC 84 (236)
T ss_pred HHHHHCcCCCCCEEEECCEEeecHHHHHHHHHHHcC
Confidence 478899999999999999999999999999999983
No 35
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.12 E-value=4.8e-11 Score=65.71 Aligned_cols=32 Identities=38% Similarity=0.520 Sum_probs=29.5
Q ss_pred cccccCCCCCCcEEEeCCeEeecHHHHHHHHH
Q psy9882 2 TTVNHYPFGKVPCIEINGVQYHQSRAIGRYLA 33 (81)
Q Consensus 2 ~~~~~~P~gkvP~L~~~~~~l~eS~aI~~yL~ 33 (81)
.|++.||+|++|+|+++|..|+||.||++||+
T Consensus 42 ~~~~~nP~g~vP~L~~~g~~l~eS~aI~~YL~ 73 (73)
T cd03043 42 RILEFSPTGKVPVLVDGGIVVWDSLAICEYLA 73 (73)
T ss_pred HHHhhCCCCcCCEEEECCEEEEcHHHHHHHhC
Confidence 36789999999999999999999999999984
No 36
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=99.11 E-value=5.1e-11 Score=65.71 Aligned_cols=33 Identities=36% Similarity=0.657 Sum_probs=30.0
Q ss_pred cccccCCCCCCcEEEe-CCeEeecHHHHHHHHHH
Q psy9882 2 TTVNHYPFGKVPCIEI-NGVQYHQSRAIGRYLAR 34 (81)
Q Consensus 2 ~~~~~~P~gkvP~L~~-~~~~l~eS~aI~~yL~~ 34 (81)
+|+++||+|++|+|++ +|..|+||.||++||++
T Consensus 41 ~~~~~nP~~~vP~L~~~~g~~l~es~aI~~yL~~ 74 (75)
T cd03044 41 EFLKKFPLGKVPAFEGADGFCLFESNAIAYYVAN 74 (75)
T ss_pred HHHHhCCCCCCCEEEcCCCCEEeeHHHHHHHHhh
Confidence 4788999999999997 58899999999999986
No 37
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=99.11 E-value=9.6e-11 Score=64.24 Aligned_cols=35 Identities=23% Similarity=0.297 Sum_probs=31.3
Q ss_pred cccccCCC-CCCcEEEeCCeEeecHHHHHHHHHHhc
Q psy9882 2 TTVNHYPF-GKVPCIEINGVQYHQSRAIGRYLARQA 36 (81)
Q Consensus 2 ~~~~~~P~-gkvP~L~~~~~~l~eS~aI~~yL~~~~ 36 (81)
.|++.||. |++|+|+++|..++||.||++||++++
T Consensus 39 ~~~~~~p~~~~vP~l~~~~~~l~eS~aI~~yL~~~~ 74 (74)
T cd03058 39 LLLASNPVHKKIPVLLHNGKPICESLIIVEYIDEAW 74 (74)
T ss_pred HHHHhCCCCCCCCEEEECCEEeehHHHHHHHHHhhC
Confidence 35688995 999999999999999999999999864
No 38
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=99.10 E-value=1e-10 Score=64.58 Aligned_cols=35 Identities=31% Similarity=0.374 Sum_probs=32.6
Q ss_pred ccccCCCCCCcEEEeCCeEeecHHHHHHHHHHhcC
Q psy9882 3 TVNHYPFGKVPCIEINGVQYHQSRAIGRYLARQAG 37 (81)
Q Consensus 3 ~~~~~P~gkvP~L~~~~~~l~eS~aI~~yL~~~~~ 37 (81)
|++.||.|+||+|+++|..++||.+|++||+++++
T Consensus 38 ~~~~~p~~~vPvL~~~g~~l~dS~~I~~yL~~~~~ 72 (75)
T PF13417_consen 38 FLKLNPKGKVPVLVDDGEVLTDSAAIIEYLEERYP 72 (75)
T ss_dssp HHHHSTTSBSSEEEETTEEEESHHHHHHHHHHHST
T ss_pred HHhhcccccceEEEECCEEEeCHHHHHHHHHHHcC
Confidence 56789999999999999999999999999999875
No 39
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=99.10 E-value=1e-10 Score=63.95 Aligned_cols=34 Identities=35% Similarity=0.442 Sum_probs=29.9
Q ss_pred cccccCCCCCCcEEEe-CCeEeecHHHHHHHHHHh
Q psy9882 2 TTVNHYPFGKVPCIEI-NGVQYHQSRAIGRYLARQ 35 (81)
Q Consensus 2 ~~~~~~P~gkvP~L~~-~~~~l~eS~aI~~yL~~~ 35 (81)
.|++.||.|+||+|++ +|..++||.+|++||+++
T Consensus 36 ~~~~~~p~~~VP~L~~~~g~vi~eS~~I~~yL~~~ 70 (70)
T PF13409_consen 36 EFLALNPRGKVPVLVDPDGTVINESLAILEYLEEQ 70 (70)
T ss_dssp BHHHHSTT-SSSEEEETTTEEEESHHHHHHHHHHT
T ss_pred hhhccCcCeEEEEEEECCCCEeeCHHHHHHHHhcC
Confidence 3678999999999998 789999999999999874
No 40
>PRK10387 glutaredoxin 2; Provisional
Probab=99.09 E-value=2.5e-10 Score=72.94 Aligned_cols=56 Identities=16% Similarity=0.199 Sum_probs=44.0
Q ss_pred cccCCCCCCcEEE-eCCeEeecHHHHHHHHHHhcC--CCCCCHHHHHHHHHHHHHHHHHHhh
Q psy9882 4 VNHYPFGKVPCIE-INGVQYHQSRAIGRYLARQAG--LYGMDGPEMDMKIDMIVDTIDDMRQ 62 (81)
Q Consensus 4 ~~~~P~gkvP~L~-~~~~~l~eS~aI~~yL~~~~~--l~~~~~~e~~a~v~~~~~~~~d~~~ 62 (81)
.+.||.|+||+|+ ++|..|+||.||++||+++|+ +.+ + .+ ++.+++|+.+......
T Consensus 40 ~~~~p~~~VPvL~~~~g~~l~eS~aI~~yL~~~~~~~~l~-~-~~-~~~~~~~~~~~~~~~~ 98 (210)
T PRK10387 40 IRMIGQKQVPILQKDDGSYMPESLDIVHYIDELDGKPLLT-G-KR-SPAIEEWLRKVFGYLN 98 (210)
T ss_pred HHhcCCcccceEEecCCeEecCHHHHHHHHHHhCCCccCC-C-cc-cHHHHHHHHHHHHHhh
Confidence 4578999999994 789999999999999999985 333 1 25 6788889887764443
No 41
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.07 E-value=1.4e-10 Score=64.34 Aligned_cols=35 Identities=26% Similarity=0.263 Sum_probs=30.9
Q ss_pred cccccCCCCCCcEEEe--CCeEeecHHHHHHHHHHhc
Q psy9882 2 TTVNHYPFGKVPCIEI--NGVQYHQSRAIGRYLARQA 36 (81)
Q Consensus 2 ~~~~~~P~gkvP~L~~--~~~~l~eS~aI~~yL~~~~ 36 (81)
+|++.||.|+||+|++ +|..++||.+|++||+++|
T Consensus 41 ~~~~~~p~~~vP~l~~~~~~~~l~es~~I~~yL~~~~ 77 (77)
T cd03041 41 KFLEKGGKVQVPYLVDPNTGVQMFESADIVKYLFKTY 77 (77)
T ss_pred HHHHhCCCCcccEEEeCCCCeEEEcHHHHHHHHHHhC
Confidence 3678899999999997 4689999999999999874
No 42
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=99.06 E-value=4.1e-10 Score=72.75 Aligned_cols=57 Identities=16% Similarity=0.220 Sum_probs=43.9
Q ss_pred ccccCCCCCCcEEE-eCCeEeecHHHHHHHHHHhcC--CCCCCHHHHHHHHHHHHHHHHHHhh
Q psy9882 3 TVNHYPFGKVPCIE-INGVQYHQSRAIGRYLARQAG--LYGMDGPEMDMKIDMIVDTIDDMRQ 62 (81)
Q Consensus 3 ~~~~~P~gkvP~L~-~~~~~l~eS~aI~~yL~~~~~--l~~~~~~e~~a~v~~~~~~~~d~~~ 62 (81)
..+.||.|+||+|+ ++|..|+||.+|++||+++|+ +.+. .+ ++.+.+|+.+....+.
T Consensus 38 ~~~~np~g~vP~l~~~~g~~l~es~~I~~yL~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~ 97 (209)
T TIGR02182 38 PIRMIGAKQVPILQKDDGRAMPESLDIVAYFDKLDGEPLLTG--KV-SPEIEAWLRKVTGYAN 97 (209)
T ss_pred HHHhcCCCCcceEEeeCCeEeccHHHHHHHHHHhCCCccCCC--CC-hHHHHHHHHHHHHHhh
Confidence 35789999999998 788999999999999999985 3321 24 5667788777655443
No 43
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=99.05 E-value=2.4e-10 Score=64.15 Aligned_cols=33 Identities=30% Similarity=0.244 Sum_probs=30.4
Q ss_pred ccCCCCCCcEEEeC-CeEeecHHHHHHHHHHhcC
Q psy9882 5 NHYPFGKVPCIEIN-GVQYHQSRAIGRYLARQAG 37 (81)
Q Consensus 5 ~~~P~gkvP~L~~~-~~~l~eS~aI~~yL~~~~~ 37 (81)
+.||.|++|+|+++ |..++||.||++||+++|+
T Consensus 51 ~~~p~~~vP~L~~~~~~~l~eS~aI~~yL~~~~p 84 (84)
T cd03038 51 TSGGFYTVPVIVDGSGEVIGDSFAIAEYLEEAYP 84 (84)
T ss_pred cCCCCceeCeEEECCCCEEeCHHHHHHHHHHhCc
Confidence 57999999999998 8999999999999999863
No 44
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.05 E-value=1.5e-10 Score=62.83 Aligned_cols=31 Identities=39% Similarity=0.553 Sum_probs=28.9
Q ss_pred ccccCCCCCCcEEEeCCeEeecHHHHHHHHH
Q psy9882 3 TVNHYPFGKVPCIEINGVQYHQSRAIGRYLA 33 (81)
Q Consensus 3 ~~~~~P~gkvP~L~~~~~~l~eS~aI~~yL~ 33 (81)
|++.||.|++|+|+++|..++||.||++||+
T Consensus 43 ~~~~~p~~~vP~l~~~~~~i~es~aI~~yl~ 73 (73)
T cd03056 43 FLALNPNGEVPVLELDGRVLAESNAILVYLA 73 (73)
T ss_pred HHHhCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 5678999999999999999999999999984
No 45
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=99.03 E-value=2e-10 Score=62.41 Aligned_cols=32 Identities=38% Similarity=0.452 Sum_probs=29.4
Q ss_pred cccccCCCCCCcEEEeCCeEeecHHHHHHHHH
Q psy9882 2 TTVNHYPFGKVPCIEINGVQYHQSRAIGRYLA 33 (81)
Q Consensus 2 ~~~~~~P~gkvP~L~~~~~~l~eS~aI~~yL~ 33 (81)
.|++.||.|++|+|+++|..++||.||++||+
T Consensus 42 ~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 73 (73)
T cd03042 42 AYRALNPQGLVPTLVIDGLVLTQSLAIIEYLD 73 (73)
T ss_pred HHHHhCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 46788999999999999999999999999984
No 46
>PLN02907 glutamate-tRNA ligase
Probab=98.95 E-value=2.3e-09 Score=80.17 Aligned_cols=53 Identities=26% Similarity=0.447 Sum_probs=47.6
Q ss_pred cCCCCCCcEEEe-CCeEeecHHHHHHHHHHhcC---CCCCCHHHHHHHHHHHHHHHHH
Q psy9882 6 HYPFGKVPCIEI-NGVQYHQSRAIGRYLARQAG---LYGMDGPEMDMKIDMIVDTIDD 59 (81)
Q Consensus 6 ~~P~gkvP~L~~-~~~~l~eS~aI~~yL~~~~~---l~~~~~~e~~a~v~~~~~~~~d 59 (81)
.+|+|+||+|++ +|..|+||.||++||+++++ |+|.++.+ ++++++|+.++..
T Consensus 32 ~~p~GkVPvLv~ddG~~L~ES~AIl~YLa~~~p~~~L~p~d~~e-rAqV~qWL~~~~~ 88 (722)
T PLN02907 32 SLKSGSAPTLLFSSGEKLTGTNVLLRYIARSASLPGFYGQDAFE-SSQVDEWLDYAPT 88 (722)
T ss_pred cCCCCCCcEEEECCCCEEECHHHHHHHHHHhCCCcCCCCCCHHH-HHHHHHHHHHHhh
Confidence 579999999995 78999999999999999973 88888888 9999999998864
No 47
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=98.95 E-value=5.4e-10 Score=60.90 Aligned_cols=31 Identities=26% Similarity=0.415 Sum_probs=28.1
Q ss_pred cccccCCCCCCcEEEeC-CeEeecHHHHHHHH
Q psy9882 2 TTVNHYPFGKVPCIEIN-GVQYHQSRAIGRYL 32 (81)
Q Consensus 2 ~~~~~~P~gkvP~L~~~-~~~l~eS~aI~~yL 32 (81)
.|++.||.|+||+|+++ |..++||.||++|+
T Consensus 39 ~~~~~np~~~vP~L~~~~g~~l~eS~aI~~y~ 70 (71)
T cd03060 39 EMLAASPKGTVPVLVLGNGTVIEESLDIMRWA 70 (71)
T ss_pred HHHHHCCCCCCCEEEECCCcEEecHHHHHHhh
Confidence 46789999999999984 89999999999996
No 48
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.91 E-value=6.4e-10 Score=60.70 Aligned_cols=32 Identities=31% Similarity=0.636 Sum_probs=28.6
Q ss_pred cccccCCCCCCcEEEe-CCeEeecHHHHHHHHH
Q psy9882 2 TTVNHYPFGKVPCIEI-NGVQYHQSRAIGRYLA 33 (81)
Q Consensus 2 ~~~~~~P~gkvP~L~~-~~~~l~eS~aI~~yL~ 33 (81)
+|++.||+|++|+|++ +|..++||.||++||+
T Consensus 41 ~~~~~~p~~~vP~l~~~~g~~l~es~aI~~yLe 73 (73)
T cd03049 41 SLLAVNPLGKIPALVLDDGEALFDSRVICEYLD 73 (73)
T ss_pred HHHHhCCCCCCCEEEECCCCEEECHHHHHhhhC
Confidence 4678999999999985 7899999999999984
No 49
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=98.84 E-value=4.5e-09 Score=58.53 Aligned_cols=30 Identities=23% Similarity=0.372 Sum_probs=27.8
Q ss_pred cCCCCCCcEEEeCCeEeecHHHHHHHHHHh
Q psy9882 6 HYPFGKVPCIEINGVQYHQSRAIGRYLARQ 35 (81)
Q Consensus 6 ~~P~gkvP~L~~~~~~l~eS~aI~~yL~~~ 35 (81)
.+|.||||+|++||.+|+||.||+.||+++
T Consensus 45 ~~P~GkVP~L~~dg~vI~eS~aIl~yL~~~ 74 (74)
T cd03079 45 MSPSGKVPFIRVGNQIVSEFGPIVQFVEAK 74 (74)
T ss_pred cCCCCcccEEEECCEEEeCHHHHHHHHhcC
Confidence 678999999999999999999999999864
No 50
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=98.84 E-value=1.8e-09 Score=58.42 Aligned_cols=31 Identities=39% Similarity=0.643 Sum_probs=28.0
Q ss_pred ccccCCCCCCcEEEe-CCeEeecHHHHHHHHH
Q psy9882 3 TVNHYPFGKVPCIEI-NGVQYHQSRAIGRYLA 33 (81)
Q Consensus 3 ~~~~~P~gkvP~L~~-~~~~l~eS~aI~~yL~ 33 (81)
|++.||.|++|+|++ +|..++||.||++||+
T Consensus 43 ~~~~~p~~~vP~l~~~~~~~l~es~aI~~yLe 74 (74)
T cd03051 43 FLAKNPAGTVPVLELDDGTVITESVAICRYLE 74 (74)
T ss_pred HHhhCCCCCCCEEEeCCCCEEecHHHHHHHhC
Confidence 678899999999985 7789999999999984
No 51
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=98.79 E-value=3.9e-09 Score=60.03 Aligned_cols=31 Identities=39% Similarity=0.576 Sum_probs=28.4
Q ss_pred ccccCCCCCCcEEEeC-CeEeecHHHHHHHHH
Q psy9882 3 TVNHYPFGKVPCIEIN-GVQYHQSRAIGRYLA 33 (81)
Q Consensus 3 ~~~~~P~gkvP~L~~~-~~~l~eS~aI~~yL~ 33 (81)
|++.||+|++|+|+++ |..++||.||++||+
T Consensus 58 ~~~~np~~~vPvL~~~~g~~l~eS~aI~~yLe 89 (89)
T cd03055 58 FLEKNPQGKVPALEIDEGKVVYESLIICEYLD 89 (89)
T ss_pred HHhhCCCCCcCEEEECCCCEEECHHHHHHhhC
Confidence 6789999999999986 899999999999984
No 52
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=98.75 E-value=1.4e-08 Score=55.26 Aligned_cols=31 Identities=35% Similarity=0.594 Sum_probs=28.6
Q ss_pred ccCCCCCCcEEEeCCeEeecHHHHHHHHHHh
Q psy9882 5 NHYPFGKVPCIEINGVQYHQSRAIGRYLARQ 35 (81)
Q Consensus 5 ~~~P~gkvP~L~~~~~~l~eS~aI~~yL~~~ 35 (81)
..+|.|++|+|+++|..++||.+|++||+++
T Consensus 42 ~~~p~g~vP~l~~~g~~l~es~~I~~yL~~~ 72 (72)
T cd03054 42 WRSPTGKLPFLELNGEKIADSEKIIEYLKKK 72 (72)
T ss_pred ccCCCcccCEEEECCEEEcCHHHHHHHHhhC
Confidence 3689999999999999999999999999874
No 53
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=98.75 E-value=8.3e-09 Score=56.03 Aligned_cols=31 Identities=19% Similarity=0.279 Sum_probs=27.5
Q ss_pred cccCCCCCCcEEEeC-CeEeecHHHHHHHHHH
Q psy9882 4 VNHYPFGKVPCIEIN-GVQYHQSRAIGRYLAR 34 (81)
Q Consensus 4 ~~~~P~gkvP~L~~~-~~~l~eS~aI~~yL~~ 34 (81)
++.+|.|+||+|+++ |..++||.||++||++
T Consensus 40 ~~~~~~~~vP~L~~~~~~~l~es~aI~~yL~~ 71 (71)
T cd03037 40 IRMIGAKQVPILEKDDGSFMAESLDIVAFIDE 71 (71)
T ss_pred HHhcCCCccCEEEeCCCeEeehHHHHHHHHhC
Confidence 457899999999985 8999999999999974
No 54
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=98.70 E-value=2.7e-08 Score=54.72 Aligned_cols=32 Identities=25% Similarity=0.309 Sum_probs=28.3
Q ss_pred ccCCCCCCcEEEeC----CeEeecHHHHHHHHHHhc
Q psy9882 5 NHYPFGKVPCIEIN----GVQYHQSRAIGRYLARQA 36 (81)
Q Consensus 5 ~~~P~gkvP~L~~~----~~~l~eS~aI~~yL~~~~ 36 (81)
+.+|.++||+|+++ |..|+||.+|++||+++.
T Consensus 41 ~~~~~~~vP~l~~~~~~~~~~l~eS~~I~~yL~~~~ 76 (77)
T cd03040 41 KWSSYKKVPILRVESGGDGQQLVDSSVIISTLKTYL 76 (77)
T ss_pred HHhCCCccCEEEECCCCCccEEEcHHHHHHHHHHHc
Confidence 45899999999965 789999999999999874
No 55
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=98.67 E-value=2.1e-08 Score=52.70 Aligned_cols=31 Identities=42% Similarity=0.584 Sum_probs=28.5
Q ss_pred ccccCCCCCCcEEEeCCeEeecHHHHHHHHH
Q psy9882 3 TVNHYPFGKVPCIEINGVQYHQSRAIGRYLA 33 (81)
Q Consensus 3 ~~~~~P~gkvP~L~~~~~~l~eS~aI~~yL~ 33 (81)
+++.+|.+++|+|.++|..++||.+|++||+
T Consensus 41 ~~~~~~~~~~P~l~~~~~~~~es~~I~~yl~ 71 (71)
T cd00570 41 FLALNPLGKVPVLEDGGLVLTESLAILEYLA 71 (71)
T ss_pred HHhcCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 5668999999999999999999999999984
No 56
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=98.03 E-value=1e-05 Score=44.62 Aligned_cols=30 Identities=30% Similarity=0.525 Sum_probs=27.5
Q ss_pred cCCCCCCcEEEeCCeEeecHHHHHHHHHHh
Q psy9882 6 HYPFGKVPCIEINGVQYHQSRAIGRYLARQ 35 (81)
Q Consensus 6 ~~P~gkvP~L~~~~~~l~eS~aI~~yL~~~ 35 (81)
..|.||+|+|++++..+.+|..|++||.++
T Consensus 43 ~sp~gkLP~l~~~~~~i~d~~~Ii~~L~~~ 72 (73)
T cd03078 43 RSPTGKLPALLTSGTKISGPEKIIEYLRKQ 72 (73)
T ss_pred CCCCCccCEEEECCEEecChHHHHHHHHHc
Confidence 568899999999999999999999999875
No 57
>KOG4420|consensus
Probab=97.93 E-value=1.1e-05 Score=54.62 Aligned_cols=40 Identities=23% Similarity=0.203 Sum_probs=35.9
Q ss_pred cccccCCCCCCcEEEeCCeEeecHHHHHHHHHHhc-C---CCCC
Q psy9882 2 TTVNHYPFGKVPCIEINGVQYHQSRAIGRYLARQA-G---LYGM 41 (81)
Q Consensus 2 ~~~~~~P~gkvP~L~~~~~~l~eS~aI~~yL~~~~-~---l~~~ 41 (81)
.|...||.|.||||++|+.+|.++.-|+.|+.++| | |.|.
T Consensus 68 wFmrlNp~gevPVl~~g~~II~d~tqIIdYvErtf~ger~l~pe 111 (325)
T KOG4420|consen 68 WFMRLNPGGEVPVLIHGDNIISDYTQIIDYVERTFTGERVLMPE 111 (325)
T ss_pred hheecCCCCCCceEecCCeecccHHHHHHHHHHhhccccccccc
Confidence 47889999999999999999999999999999987 2 6664
No 58
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.00077 Score=43.56 Aligned_cols=51 Identities=20% Similarity=0.284 Sum_probs=38.0
Q ss_pred CCCCcEEEe-CCeEeecHHHHHHHHHHhcC---CCCCCHHHHHHHHHHHHHHHHHHhhh
Q psy9882 9 FGKVPCIEI-NGVQYHQSRAIGRYLARQAG---LYGMDGPEMDMKIDMIVDTIDDMRQG 63 (81)
Q Consensus 9 ~gkvP~L~~-~~~~l~eS~aI~~yL~~~~~---l~~~~~~e~~a~v~~~~~~~~d~~~~ 63 (81)
..+||+|+. +|.-+.||.-|++|+.+..| +.++ . +-.++.|+..+..+.++
T Consensus 45 ~KqVPiL~Kedg~~m~ESlDIV~y~d~~~~~~~lt~~---~-~pai~~wlrkv~~y~nk 99 (215)
T COG2999 45 QKQVPILQKEDGRAMPESLDIVHYVDELDGKPLLTGK---V-RPAIEAWLRKVNGYLNK 99 (215)
T ss_pred ccccceEEccccccchhhhHHHHHHHHhcCchhhccC---c-CHHHHHHHHHhcchHhh
Confidence 468999995 78899999999999999876 3333 2 34556777766655554
No 59
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=97.02 E-value=0.0013 Score=36.20 Aligned_cols=27 Identities=30% Similarity=0.397 Sum_probs=25.0
Q ss_pred cCCCCCCcEEEe-CCeEeecHHHHHHHH
Q psy9882 6 HYPFGKVPCIEI-NGVQYHQSRAIGRYL 32 (81)
Q Consensus 6 ~~P~gkvP~L~~-~~~~l~eS~aI~~yL 32 (81)
..|.|++|+|.+ ++..+.+-..|++||
T Consensus 44 ~Sptg~LP~L~~~~~~~vsg~~~Iv~yL 71 (72)
T PF10568_consen 44 LSPTGELPALIDSGGTWVSGFRNIVEYL 71 (72)
T ss_pred cCCCCCCCEEEECCCcEEECHHHHHHhh
Confidence 568999999999 899999999999998
No 60
>cd03200 GST_C_JTV1 GST_C family, JTV-1 subfamily; composed of uncharacterized proteins with similarity to the translation product of the human JTV-1 gene. Human JTV-1, a gene of unknown function, initiates within the human PMS2 gene promoter, but is transcribed from the opposite strand. PMS2 encodes a protein involved in DNA mismatch repair and is mutated in a subset of patients with hereditary nonpolyposis colon cancer. It is unknown whether the expression of JTV-1 affects that of PMS2, or vice versa, as a result of their juxtaposition. JTV-1 is up-regulated while PMS2 is down-regulated in tumor cell spheroids that show increased resistance to anticancer cytotoxic drugs compared with tumor cell monolayers indicating that suppressed DNA mismatch repair may be a mechanism for multicellular resistance to alkylating agents.
Probab=96.09 E-value=0.0088 Score=34.25 Aligned_cols=31 Identities=29% Similarity=0.266 Sum_probs=27.4
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHHH-HH
Q psy9882 29 GRYLARQAGLYGMDGPEMDMKIDMIVDTID-DM 60 (81)
Q Consensus 29 ~~yL~~~~~l~~~~~~e~~a~v~~~~~~~~-d~ 60 (81)
+|||++.-|++|+++.+ .+.+++|++... ++
T Consensus 1 ~r~~~~~~~~~~~~~~~-~~~vd~~~d~~~~~l 32 (96)
T cd03200 1 ARFLYRLLGPAPNAPNA-ATNIDSWVDTAIFQL 32 (96)
T ss_pred CchHHHHhcccCCCchH-HHHHHHHHHHHHHHH
Confidence 48999998899999999 999999999876 55
No 61
>KOG4244|consensus
Probab=96.08 E-value=0.061 Score=36.68 Aligned_cols=53 Identities=19% Similarity=0.271 Sum_probs=38.9
Q ss_pred ccCCCCCCcEEEeCCeEeecHHHHHHHHHHhcCCCC-CCHHHHHHHHHHHHHHHH
Q psy9882 5 NHYPFGKVPCIEINGVQYHQSRAIGRYLARQAGLYG-MDGPEMDMKIDMIVDTID 58 (81)
Q Consensus 5 ~~~P~gkvP~L~~~~~~l~eS~aI~~yL~~~~~l~~-~~~~e~~a~v~~~~~~~~ 58 (81)
...+.|++|-++-+|..+.+|.-|..+|.+.+++.- -.+++ ++........++
T Consensus 87 ~rSr~G~lPFIELNGe~iaDS~~I~~~L~~hf~~~~~L~~e~-~a~s~Al~rm~d 140 (281)
T KOG4244|consen 87 RRSRNGTLPFIELNGEHIADSDLIEDRLRKHFKIPDDLSAEQ-RAQSRALSRMAD 140 (281)
T ss_pred eeccCCCcceEEeCCeeccccHHHHHHHHHHcCCCCCCCHHH-HHHHHHHHHHHH
Confidence 467899999999999999999999999999886443 33344 444444444333
No 62
>KOG1422|consensus
Probab=95.62 E-value=0.086 Score=34.85 Aligned_cols=36 Identities=19% Similarity=0.252 Sum_probs=33.3
Q ss_pred cccccCCCCCCcEEEeCCeEeecHHHHHHHHHHhcC
Q psy9882 2 TTVNHYPFGKVPCIEINGVQYHQSRAIGRYLARQAG 37 (81)
Q Consensus 2 ~~~~~~P~gkvP~L~~~~~~l~eS~aI~~yL~~~~~ 37 (81)
.|+++.|.|++|+|..++...+||..|-++|.++++
T Consensus 51 ~f~~~sp~~~~P~l~~d~~~~tDs~~Ie~~Lee~l~ 86 (221)
T KOG1422|consen 51 WFLDISPGGKPPVLKFDEKWVTDSDKIEEFLEEKLP 86 (221)
T ss_pred HHHhhCCCCCCCeEEeCCceeccHHHHHHHHHHhcC
Confidence 367899999999999999999999999999999984
No 63
>PF09635 MetRS-N: MetRS-N binding domain; InterPro: IPR018285 This entry represents the N-terminal domain of methionyl-tRNA synthetase (MetRS). This N-terminal appended domain mediates non-catalytic complex formation through its interaction with a domain in the tRNA aminoacylation cofactor Arc1p. The interacting domains of MetRS, GluRS (glutamyl-tRNA synthetase) and Arc1p form a ternary complex resembling a classical GST homo-dimer []. Domain-swapping between symmetrically related MetRS-N and Arc1p-N domains generates a 2:2 tetramer held together by van der Waals forces. This domain is necessary for formation of the aminoacyl-tRNA synthetase complex necessary for tRNA nuclear export and shuttling as part of the translational apparatus. ; PDB: 2HSN_A.
Probab=95.54 E-value=0.0077 Score=36.47 Aligned_cols=32 Identities=25% Similarity=0.286 Sum_probs=15.6
Q ss_pred ccCCCCCCcEEEe--CCeEeecHHHHHHHHHHhc
Q psy9882 5 NHYPFGKVPCIEI--NGVQYHQSRAIGRYLARQA 36 (81)
Q Consensus 5 ~~~P~gkvP~L~~--~~~~l~eS~aI~~yL~~~~ 36 (81)
+.|....-|-|.+ +|+.++|++||+||+..-|
T Consensus 29 ~v~ed~~~~~L~~~~~gF~L~e~NAIvrYl~nDF 62 (122)
T PF09635_consen 29 EVNEDESGPLLKDKKSGFELFEPNAIVRYLANDF 62 (122)
T ss_dssp EE-SS--S--EEE-S--S----HHHHHHHHTT--
T ss_pred eeCCccccceeeecCCceEEecccHHHHHHHhhc
Confidence 3456666788865 6799999999999999865
No 64
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=94.72 E-value=0.029 Score=30.80 Aligned_cols=29 Identities=28% Similarity=0.241 Sum_probs=25.5
Q ss_pred ccCCCCCCcEEEeCCeEeecHHHHHHHHH
Q psy9882 5 NHYPFGKVPCIEINGVQYHQSRAIGRYLA 33 (81)
Q Consensus 5 ~~~P~gkvP~L~~~~~~l~eS~aI~~yL~ 33 (81)
..+....+|++..+|..+.++..|.+||+
T Consensus 51 ~~~g~~~vP~i~i~g~~igG~~~l~~~l~ 79 (79)
T TIGR02190 51 AVTGATTVPQVFIGGKLIGGSDELEAYLA 79 (79)
T ss_pred HHHCCCCcCeEEECCEEEcCHHHHHHHhC
Confidence 34567899999999999999999999985
No 65
>KOG3027|consensus
Probab=94.65 E-value=0.2 Score=33.35 Aligned_cols=56 Identities=16% Similarity=0.305 Sum_probs=42.6
Q ss_pred cCCCCCCcEEEeCCeEeecHHHHHHHHHHhcC-CCC-CCHHHHHHHHHHHHHHHHHHhh
Q psy9882 6 HYPFGKVPCIEINGVQYHQSRAIGRYLARQAG-LYG-MDGPEMDMKIDMIVDTIDDMRQ 62 (81)
Q Consensus 6 ~~P~gkvP~L~~~~~~l~eS~aI~~yL~~~~~-l~~-~~~~e~~a~v~~~~~~~~d~~~ 62 (81)
..|-|+||.|..|.+.++|-.+|..++..+-. |.. .++.+ ++.++..++.+++++.
T Consensus 62 mSP~G~vPllr~g~~~~aef~pIV~fVeak~~~l~s~lsE~q-kadmra~vslVen~~t 119 (257)
T KOG3027|consen 62 MSPGGKVPLLRIGKTLFAEFEPIVDFVEAKGVTLTSWLSEDQ-KADMRAYVSLVENLLT 119 (257)
T ss_pred cCCCCCCceeeecchhhhhhhHHHHHHHHhccchhhhhhhHH-HHHHHHHHHHHHHHHH
Confidence 46999999999999999999999999999853 221 23345 6777777777776655
No 66
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=92.73 E-value=0.24 Score=29.65 Aligned_cols=31 Identities=29% Similarity=0.469 Sum_probs=23.9
Q ss_pred CCCCcEEEe-CC-------------eEeecHHHHHHHHHHhcCCC
Q psy9882 9 FGKVPCIEI-NG-------------VQYHQSRAIGRYLARQAGLY 39 (81)
Q Consensus 9 ~gkvP~L~~-~~-------------~~l~eS~aI~~yL~~~~~l~ 39 (81)
+..+|+|+- ++ ..|.++..|++||+++||+.
T Consensus 66 ~QslPvLVL~~~~~~~~~~~~~~~~rfi~d~~~I~~~La~r~g~p 110 (112)
T PF11287_consen 66 NQSLPVLVLADGAPSPDDAGSHGGRRFIDDPRRILRYLAERHGFP 110 (112)
T ss_pred ccCCCEEEeCCCCCCcccccccCCeEEeCCHHHHHHHHHHHcCCC
Confidence 456788874 22 26899999999999999853
No 67
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=91.83 E-value=0.21 Score=25.88 Aligned_cols=29 Identities=17% Similarity=0.182 Sum_probs=21.4
Q ss_pred cccCCCCCCcEEEeCCeEe--ecHHHHHHHH
Q psy9882 4 VNHYPFGKVPCIEINGVQY--HQSRAIGRYL 32 (81)
Q Consensus 4 ~~~~P~gkvP~L~~~~~~l--~eS~aI~~yL 32 (81)
++.++.+.+|++..+|..+ +++.+|.+++
T Consensus 43 ~~~~~~~~vP~~~~~~~~~~g~~~~~i~~~i 73 (74)
T TIGR02196 43 LKVLGQRGVPVIVIGHKIIVGFDPEKLDQLL 73 (74)
T ss_pred HHHhCCCcccEEEECCEEEeeCCHHHHHHHh
Confidence 4557888999999988776 5666666654
No 68
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=90.61 E-value=0.32 Score=25.88 Aligned_cols=27 Identities=26% Similarity=0.289 Sum_probs=23.2
Q ss_pred CCCCCCcEEEeCCeEeecHHHHHHHHH
Q psy9882 7 YPFGKVPCIEINGVQYHQSRAIGRYLA 33 (81)
Q Consensus 7 ~P~gkvP~L~~~~~~l~eS~aI~~yL~ 33 (81)
.....+|++..||..+..+..|.+||+
T Consensus 46 ~g~~~vP~ifi~g~~igg~~~l~~~l~ 72 (72)
T cd03029 46 TGAMTVPQVFIDGELIGGSDDLEKYFA 72 (72)
T ss_pred hCCCCcCeEEECCEEEeCHHHHHHHhC
Confidence 345689999999999999999999974
No 69
>KOG3029|consensus
Probab=89.76 E-value=0.56 Score=32.64 Aligned_cols=26 Identities=38% Similarity=0.451 Sum_probs=22.3
Q ss_pred CCCCcEEEeCCeEeecHHHHHHHHHH
Q psy9882 9 FGKVPCIEINGVQYHQSRAIGRYLAR 34 (81)
Q Consensus 9 ~gkvP~L~~~~~~l~eS~aI~~yL~~ 34 (81)
+.|||+|...|..+.||.+|+.-|+.
T Consensus 134 ykKVPil~~~Geqm~dSsvIIs~laT 159 (370)
T KOG3029|consen 134 YKKVPILLIRGEQMVDSSVIISLLAT 159 (370)
T ss_pred cccccEEEeccceechhHHHHHHHHH
Confidence 78999999866679999999988755
No 70
>KOG3028|consensus
Probab=89.50 E-value=3.8 Score=28.64 Aligned_cols=57 Identities=16% Similarity=0.199 Sum_probs=40.5
Q ss_pred cCCCCCCcEEEe-CCeEeecHHHHHHHHHHh---cCCCCCC-HHHHHHHHHHHHHHHHHHhhh
Q psy9882 6 HYPFGKVPCIEI-NGVQYHQSRAIGRYLARQ---AGLYGMD-GPEMDMKIDMIVDTIDDMRQG 63 (81)
Q Consensus 6 ~~P~gkvP~L~~-~~~~l~eS~aI~~yL~~~---~~l~~~~-~~e~~a~v~~~~~~~~d~~~~ 63 (81)
..|.|++|+|+. +|..++.-.-|..+|... |.+.... ..+ .+....|+.+.+.-...
T Consensus 44 ~s~sg~LP~l~~~ng~~va~~~~iv~~L~k~~~ky~~d~dl~~kq-~a~~~a~~sll~~~l~~ 105 (313)
T KOG3028|consen 44 RSPSGKLPYLITDNGTKVAGPVKIVQFLKKNTKKYNLDADLSAKQ-LADTLAFMSLLEENLEP 105 (313)
T ss_pred CCCCCCCCeEEecCCceeccHHHHHHHHHHhcccCCcCccHHHHH-HHHHHHHHHHHHHHHHH
Confidence 457899999997 458899999999999983 3333322 344 67777777777654443
No 71
>PRK10638 glutaredoxin 3; Provisional
Probab=88.34 E-value=0.74 Score=25.22 Aligned_cols=32 Identities=19% Similarity=0.096 Sum_probs=25.3
Q ss_pred ccccCCCCCCcEEEeCCeEeecHHHHHHHHHH
Q psy9882 3 TVNHYPFGKVPCIEINGVQYHQSRAIGRYLAR 34 (81)
Q Consensus 3 ~~~~~P~gkvP~L~~~~~~l~eS~aI~~yL~~ 34 (81)
+.+.++.+++|++..+|..+.....+..+-.+
T Consensus 44 l~~~~g~~~vP~i~~~g~~igG~~~~~~~~~~ 75 (83)
T PRK10638 44 MIKRSGRTTVPQIFIDAQHIGGCDDLYALDAR 75 (83)
T ss_pred HHHHhCCCCcCEEEECCEEEeCHHHHHHHHHc
Confidence 45678899999999999989888777766543
No 72
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=86.61 E-value=0.54 Score=24.20 Aligned_cols=22 Identities=14% Similarity=0.182 Sum_probs=17.0
Q ss_pred ccccCCCCCCcEEEeCCeEeec
Q psy9882 3 TVNHYPFGKVPCIEINGVQYHQ 24 (81)
Q Consensus 3 ~~~~~P~gkvP~L~~~~~~l~e 24 (81)
|.+.+|.+++|++.+++..+..
T Consensus 42 ~~~~~~~~~vP~i~~~~~~i~g 63 (73)
T cd02976 42 LKKLNGYRSVPVVVIGDEHLSG 63 (73)
T ss_pred HHHHcCCcccCEEEECCEEEec
Confidence 4456789999999998866644
No 73
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=85.94 E-value=1 Score=22.93 Aligned_cols=27 Identities=22% Similarity=0.126 Sum_probs=22.2
Q ss_pred cccCCCCCCcEEEeCCeEeecHHHHHH
Q psy9882 4 VNHYPFGKVPCIEINGVQYHQSRAIGR 30 (81)
Q Consensus 4 ~~~~P~gkvP~L~~~~~~l~eS~aI~~ 30 (81)
.+.++..++|++..+|..+..+..|.+
T Consensus 43 ~~~~~~~~~P~~~~~~~~igg~~~~~~ 69 (72)
T cd02066 43 KELSGWPTVPQIFINGEFIGGYDDLKA 69 (72)
T ss_pred HHHhCCCCcCEEEECCEEEecHHHHHH
Confidence 445778899999999999999877754
No 74
>COG0435 ECM4 Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=83.83 E-value=2.1 Score=29.79 Aligned_cols=48 Identities=23% Similarity=0.163 Sum_probs=35.1
Q ss_pred CCcEEEeCC--e-EeecHHHHHHHHHHhc--------CCCCCCHHHHHHHHHHHHHHHHHHh
Q psy9882 11 KVPCIEING--V-QYHQSRAIGRYLARQA--------GLYGMDGPEMDMKIDMIVDTIDDMR 61 (81)
Q Consensus 11 kvP~L~~~~--~-~l~eS~aI~~yL~~~~--------~l~~~~~~e~~a~v~~~~~~~~d~~ 61 (81)
.||||.|.. + +--||.-|++-+...+ +++|+. - +.+++.|.++..+..
T Consensus 129 TVPVLwDk~~~tIVnNES~eIirm~N~aFde~~~~~~dlyP~~--L-r~eId~~n~~Iy~~v 187 (324)
T COG0435 129 TVPVLWDKKTQTIVNNESAEIIRMFNSAFDEFGASAVDLYPEA--L-RTEIDELNKWIYDTV 187 (324)
T ss_pred eEEEEEecCCCeeecCCcHHHHHHHHHHHHHHhhhccccCCHH--H-HHHHHHHHhhhcccc
Confidence 589999843 2 3478999999988776 377653 3 678888888886543
No 75
>KOG2903|consensus
Probab=82.92 E-value=1 Score=30.99 Aligned_cols=49 Identities=20% Similarity=0.136 Sum_probs=35.4
Q ss_pred CCcEEEeCC---eEeecHHHHHHHHHHhc------------CCCCCCHHHHHHHHHHHHHHHHHHhh
Q psy9882 11 KVPCIEING---VQYHQSRAIGRYLARQA------------GLYGMDGPEMDMKIDMIVDTIDDMRQ 62 (81)
Q Consensus 11 kvP~L~~~~---~~l~eS~aI~~yL~~~~------------~l~~~~~~e~~a~v~~~~~~~~d~~~ 62 (81)
.||||.|.. .+--||.-|++.+-..+ +|+|.+ - ++.++.|.+|+.+-..
T Consensus 123 TVPVLWD~k~ktIVnNES~eIIr~fNs~f~ef~~~~e~~~lDL~P~~--L-~~~Ide~N~wvy~~IN 186 (319)
T KOG2903|consen 123 TVPVLWDLKTKTIVNNESSEIIRMFNSAFDEFNGIAENPVLDLYPSS--L-RAQIDETNSWVYDKIN 186 (319)
T ss_pred EEEEEEccccceeecCchHHHHHHHhhhhhhhhccccCCccccCCHH--H-HHHHhhhhceeccccc
Confidence 589999843 44579999999998332 266653 3 6888999998875443
No 76
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=80.03 E-value=5.1 Score=21.85 Aligned_cols=29 Identities=21% Similarity=0.319 Sum_probs=24.9
Q ss_pred CCCcEEEeCCeEeecHHHHHHHHHHhcCC
Q psy9882 10 GKVPCIEINGVQYHQSRAIGRYLARQAGL 38 (81)
Q Consensus 10 gkvP~L~~~~~~l~eS~aI~~yL~~~~~l 38 (81)
..+|.+..||..+.....|..++.+.++|
T Consensus 57 ~~vP~ifi~g~~igg~~~~~~~~~~~~~~ 85 (85)
T PRK11200 57 ETVPQIFVDQKHIGGCTDFEAYVKENLGL 85 (85)
T ss_pred CcCCEEEECCEEEcCHHHHHHHHHHhccC
Confidence 57999999999999999999999887653
No 77
>PF09098 Dehyd-heme_bind: Quinohemoprotein amine dehydrogenase A, alpha subunit, haem binding; InterPro: IPR015182 Quinohemoprotein amine dehydrogenases (QHNDH) 1.4.99 from EC) are enzymes produced in the periplasmic space of certain Gram-negative bacteria, such as Paracoccus denitrificans and Pseudomonas putida, in response to primary amines, including n-butylamine and benzylamine. QHNDH catalyses the oxidative deamination of a wide range of aliphatic and aromatic amines through formation of a Schiff-base intermediate involving one of the quinone O atoms []. Catalysis requires the presence of a novel redox cofactor, cysteine tryptophylquinone (CTQ). CTQ is derived from the post-translational modification of specific residues, which involves the oxidation of the indole ring of a tryptophan residue to form tryptophylquinone, followed by covalent cross-linking with a cysteine residue []. There is one CTQ per subunit in QHNDH. In addition to CTQ, two haem c cofactors are present in QHNDH that mediate the transfer of the substrate-derived electrons from CTQ to an external electron acceptor, cytochrome c-550 [, ]. QHNDH is a heterotrimer of alpha, beta and gamma subunits. The alpha and beta subunits contain signal peptides necessary for the translocation of QHNDH to the periplasm. The alpha subunit is composed of four domains - domain 1 forming a dihaem cytochrome, and domains 2-4 forming antiparallel beta-barrel structures; the beta subunit is a 7-bladed beta-propeller that provides part of the active site; and the small, catalytic gamma subunit contains the novel cross-linked CTQ cofactor, in addition to additional thioester cross-links between Cys and Asp/Glu residues that encage CTQ. The gamma subunit assumes a globular secondary structure with two short alpha-helices having many turns and bends []. This entry represents the dihaem cytochrome c domain of the QHNDH alpha subunit. The domain contain two cysteine residues that are involved in thioether linkages to haem []. ; PDB: 1PBY_A 1JJU_A 1JMZ_A 1JMX_A.
Probab=77.81 E-value=1.7 Score=27.77 Aligned_cols=18 Identities=39% Similarity=0.560 Sum_probs=13.1
Q ss_pred cHHHHHHHHHHhcCCCCC
Q psy9882 24 QSRAIGRYLARQAGLYGM 41 (81)
Q Consensus 24 eS~aI~~yL~~~~~l~~~ 41 (81)
|-.||++||++.+||.|.
T Consensus 55 er~avVkYLAd~~GLap~ 72 (167)
T PF09098_consen 55 ERRAVVKYLADTQGLAPS 72 (167)
T ss_dssp HHHHHHHHHHHHT---CG
T ss_pred HHHHHHHHHHHccCCCch
Confidence 468999999999998874
No 78
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=77.57 E-value=5.4 Score=22.00 Aligned_cols=29 Identities=10% Similarity=0.150 Sum_probs=25.3
Q ss_pred CCCcEEEeCCeEeecHHHHHHHHHHhcCC
Q psy9882 10 GKVPCIEINGVQYHQSRAIGRYLARQAGL 38 (81)
Q Consensus 10 gkvP~L~~~~~~l~eS~aI~~yL~~~~~l 38 (81)
..||++..+|..+..+..|..|+.++++.
T Consensus 56 ~tVP~ifi~g~~igG~~dl~~~~~~~~~~ 84 (86)
T TIGR02183 56 ETVPQIFVDEKHVGGCTDFEQLVKENFDI 84 (86)
T ss_pred CCcCeEEECCEEecCHHHHHHHHHhcccc
Confidence 58999999999999999999999887653
No 79
>cd03189 GST_C_GTT1_like GST_C family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endopl
Probab=70.31 E-value=13 Score=20.99 Aligned_cols=23 Identities=9% Similarity=-0.148 Sum_probs=17.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhh
Q psy9882 40 GMDGPEMDMKIDMIVDTIDDMRQG 63 (81)
Q Consensus 40 ~~~~~e~~a~v~~~~~~~~d~~~~ 63 (81)
|.++.+ ++++++|+.+....+..
T Consensus 2 ~~~~~~-ra~~~~wl~~~~~~~~~ 24 (119)
T cd03189 2 PPDTAE-YADYLYWLHFAEGSLMP 24 (119)
T ss_pred CCCHHH-HHHHHHHHHHHhHhhhH
Confidence 457778 89999999988654443
No 80
>TIGR02681 phage_pRha phage regulatory protein, rha family. Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that pRha is a phage regulatory protein.
Probab=60.98 E-value=12 Score=21.94 Aligned_cols=26 Identities=8% Similarity=0.132 Sum_probs=20.7
Q ss_pred CcEEE-eCCeEeecHHHHHHHHHHhcC
Q psy9882 12 VPCIE-INGVQYHQSRAIGRYLARQAG 37 (81)
Q Consensus 12 vP~L~-~~~~~l~eS~aI~~yL~~~~~ 37 (81)
+|.+. .++...+.|..|+++...+|.
T Consensus 2 ~~~v~~~~~~~~ttS~~IAe~fgK~H~ 28 (108)
T TIGR02681 2 FPKVFTKRNQVVTDSLTMAQMFGKRHD 28 (108)
T ss_pred CceEEEECCEEEEeHHHHHHHHCcchH
Confidence 35444 588999999999999998763
No 81
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=56.22 E-value=15 Score=19.23 Aligned_cols=23 Identities=17% Similarity=-0.077 Sum_probs=17.8
Q ss_pred ccccCCCCCCcEEEeCCeEeecH
Q psy9882 3 TVNHYPFGKVPCIEINGVQYHQS 25 (81)
Q Consensus 3 ~~~~~P~gkvP~L~~~~~~l~eS 25 (81)
+++.++.+.+|++..+|..|..-
T Consensus 43 l~~~~g~~~vP~v~i~~~~iGg~ 65 (73)
T cd03027 43 LEERTGSSVVPQIFFNEKLVGGL 65 (73)
T ss_pred HHHHhCCCCcCEEEECCEEEeCH
Confidence 45667889999999988777653
No 82
>PF10850 DUF2653: Protein of unknown function (DUF2653); InterPro: IPR020516 This entry contains proteins with no known function.
Probab=55.82 E-value=13 Score=21.44 Aligned_cols=17 Identities=18% Similarity=0.167 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhcCCCCC
Q psy9882 25 SRAIGRYLARQAGLYGM 41 (81)
Q Consensus 25 S~aI~~yL~~~~~l~~~ 41 (81)
.+|||-|++++.++.|.
T Consensus 11 iNAvCl~~A~~~~i~P~ 27 (91)
T PF10850_consen 11 INAVCLHIAERKGIQPE 27 (91)
T ss_pred HHHHHHHHHHhcCCCcc
Confidence 58999999999877775
No 83
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=54.91 E-value=14 Score=23.81 Aligned_cols=20 Identities=20% Similarity=0.338 Sum_probs=18.1
Q ss_pred CCeEeecHHHHHHHHHHhcC
Q psy9882 18 NGVQYHQSRAIGRYLARQAG 37 (81)
Q Consensus 18 ~~~~l~eS~aI~~yL~~~~~ 37 (81)
.+..|++|..|-+|+.++|+
T Consensus 154 ad~lIaDs~~I~~y~~~~y~ 173 (185)
T PF09314_consen 154 ADRLIADSKGIQDYIKERYG 173 (185)
T ss_pred CCEEEEcCHHHHHHHHHHcC
Confidence 46789999999999999987
No 84
>PF10022 DUF2264: Uncharacterized protein conserved in bacteria (DUF2264); InterPro: IPR016624 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=52.58 E-value=22 Score=25.34 Aligned_cols=64 Identities=11% Similarity=0.065 Sum_probs=41.8
Q ss_pred EeCCeEeecHHHHHHHHHHhcC--CCCCCHHHHHHHHHHHHHHHHHHhhh----hhhhHhHHHHHhhcCCC
Q psy9882 16 EINGVQYHQSRAIGRYLARQAG--LYGMDGPEMDMKIDMIVDTIDDMRQG----KDIIQSYRTLLSQTGGP 80 (81)
Q Consensus 16 ~~~~~~l~eS~aI~~yL~~~~~--l~~~~~~e~~a~v~~~~~~~~d~~~~----~~~~~~~~~~~~~~g~~ 80 (81)
.+.+..++|+.+|+.-|...-. +.+-++.+ +.++..|+....+.-.. .++..-.+..|...|.+
T Consensus 102 ~~~dQ~~VEaa~la~aL~~a~~~lW~~L~~~~-k~~l~~wL~~~~~~~~~~nNW~lF~v~v~~~L~~~G~~ 171 (361)
T PF10022_consen 102 GDYDQRLVEAASLALALLRAPEWLWDPLDEEE-KENLVDWLKQIRGIKPPDNNWLLFRVMVEAFLKKVGEE 171 (361)
T ss_pred ccchhhHhHHHHHHHHHHHCHHHHHhhCCHHH-HHHHHHHHHhcCcCCCccchhHHHHHHHHHHHHHcCCC
Confidence 3456889999999998887643 44556777 88888888766543222 34445555666555654
No 85
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=52.53 E-value=6.1 Score=20.52 Aligned_cols=21 Identities=14% Similarity=0.180 Sum_probs=15.2
Q ss_pred ccC-CCCCCcEEEe-CCeEeecH
Q psy9882 5 NHY-PFGKVPCIEI-NGVQYHQS 25 (81)
Q Consensus 5 ~~~-P~gkvP~L~~-~~~~l~eS 25 (81)
+.+ +...+|++.. +|..+.++
T Consensus 44 ~~~~~~~~vP~i~~~~g~~l~~~ 66 (77)
T TIGR02200 44 SVNNGNMTVPTVKFADGSFLTNP 66 (77)
T ss_pred HHhCCCceeCEEEECCCeEecCC
Confidence 444 8889999974 66777664
No 86
>cd03182 GST_C_GTT2_like GST_C family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensiti
Probab=48.66 E-value=36 Score=19.04 Aligned_cols=20 Identities=15% Similarity=0.031 Sum_probs=14.7
Q ss_pred CHHHHHHHHHHHHHHHHHHhh
Q psy9882 42 DGPEMDMKIDMIVDTIDDMRQ 62 (81)
Q Consensus 42 ~~~e~~a~v~~~~~~~~d~~~ 62 (81)
|+.+ ++.+++|+.+++..+.
T Consensus 1 d~~~-ra~~~~w~~~~~~~~~ 20 (117)
T cd03182 1 TPLE-RAQIEMWQRRAELQGL 20 (117)
T ss_pred CHHH-HHHHHHHHHHHHHHHH
Confidence 3556 8999999999765443
No 87
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=47.85 E-value=27 Score=18.04 Aligned_cols=22 Identities=23% Similarity=0.149 Sum_probs=17.9
Q ss_pred CCcEEEeCCeEeecHHHHHHHH
Q psy9882 11 KVPCIEINGVQYHQSRAIGRYL 32 (81)
Q Consensus 11 kvP~L~~~~~~l~eS~aI~~yL 32 (81)
.+|++..+|..+.....+.++-
T Consensus 51 ~vP~v~i~g~~igg~~~~~~~~ 72 (75)
T cd03418 51 TVPQIFIGDVHIGGCDDLYALE 72 (75)
T ss_pred ccCEEEECCEEEeChHHHHHHH
Confidence 7999999988888887776654
No 88
>cd03196 GST_C_5 GST_C family, unknown subfamily 5; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=45.99 E-value=23 Score=20.40 Aligned_cols=21 Identities=10% Similarity=0.026 Sum_probs=15.0
Q ss_pred CHHHHHHHHHHHHHHHHHHhhh
Q psy9882 42 DGPEMDMKIDMIVDTIDDMRQG 63 (81)
Q Consensus 42 ~~~e~~a~v~~~~~~~~d~~~~ 63 (81)
|+.. ++.+++|+.+.+..+.+
T Consensus 3 ~~~~-~~~~~~~~~~~~~~~~~ 23 (115)
T cd03196 3 DPAA-LKEMLALIAENDNEFKH 23 (115)
T ss_pred chHH-HHHHHHHHHHcchhhHH
Confidence 5666 78888888887765554
No 89
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=41.27 E-value=41 Score=15.61 Aligned_cols=25 Identities=16% Similarity=0.313 Sum_probs=18.4
Q ss_pred CCCCcEEEeCCeEeecHHHHHHHHH
Q psy9882 9 FGKVPCIEINGVQYHQSRAIGRYLA 33 (81)
Q Consensus 9 ~gkvP~L~~~~~~l~eS~aI~~yL~ 33 (81)
.|.+|....++..++....|.+|+.
T Consensus 24 ~g~i~~~~~g~~~~~~~~~l~~~~~ 48 (49)
T TIGR01764 24 EGELPAYRVGRHYRIPREDVDEYLE 48 (49)
T ss_pred cCCCCeEEeCCeEEEeHHHHHHHHh
Confidence 4778887767777787777777764
No 90
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=41.15 E-value=58 Score=17.36 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=20.5
Q ss_pred CCcEEEeCCeEeecHHHHHHHHHHhc
Q psy9882 11 KVPCIEINGVQYHQSRAIGRYLARQA 36 (81)
Q Consensus 11 kvP~L~~~~~~l~eS~aI~~yL~~~~ 36 (81)
+-||+.-+| ..+|-.+|.+|+.+..
T Consensus 15 ~dPVi~~~G-~tyer~~I~~~l~~~~ 39 (73)
T PF04564_consen 15 RDPVILPSG-HTYERSAIERWLEQNG 39 (73)
T ss_dssp SSEEEETTS-EEEEHHHHHHHHCTTS
T ss_pred hCceeCCcC-CEEcHHHHHHHHHcCC
Confidence 458877677 7899999999999943
No 91
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=40.09 E-value=47 Score=17.33 Aligned_cols=28 Identities=14% Similarity=0.011 Sum_probs=20.8
Q ss_pred CCCCCCcEEEeCCeEeecHHHHHHHHHH
Q psy9882 7 YPFGKVPCIEINGVQYHQSRAIGRYLAR 34 (81)
Q Consensus 7 ~P~gkvP~L~~~~~~l~eS~aI~~yL~~ 34 (81)
+....+|++..+|..+..+..+..+..+
T Consensus 49 ~g~~~~P~v~~~g~~igg~~~~~~~~~~ 76 (82)
T cd03419 49 TGQRTVPNVFIGGKFIGGCDDLMALHKS 76 (82)
T ss_pred hCCCCCCeEEECCEEEcCHHHHHHHHHc
Confidence 3345789988888888888877776554
No 92
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=39.13 E-value=51 Score=17.17 Aligned_cols=25 Identities=24% Similarity=0.133 Sum_probs=15.2
Q ss_pred CCCCcEEEeCCeEeecHHHHHHHHH
Q psy9882 9 FGKVPCIEINGVQYHQSRAIGRYLA 33 (81)
Q Consensus 9 ~gkvP~L~~~~~~l~eS~aI~~yL~ 33 (81)
...+|.+..+|..+..+..+.++..
T Consensus 52 ~~~vP~v~i~g~~igg~~~~~~~~~ 76 (84)
T TIGR02180 52 QRTVPNIFINGKFIGGCSDLLALYK 76 (84)
T ss_pred CCCCCeEEECCEEEcCHHHHHHHHH
Confidence 3456777666666666655555443
No 93
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=38.94 E-value=46 Score=17.46 Aligned_cols=29 Identities=17% Similarity=0.012 Sum_probs=20.1
Q ss_pred cCCCCCCcEEEeCCeEeecHHHHHHHHHH
Q psy9882 6 HYPFGKVPCIEINGVQYHQSRAIGRYLAR 34 (81)
Q Consensus 6 ~~P~gkvP~L~~~~~~l~eS~aI~~yL~~ 34 (81)
......+|++..+|..+.....+..+..+
T Consensus 44 ~~g~~~vP~i~i~g~~igg~~~~~~~~~~ 72 (79)
T TIGR02181 44 RSGRRTVPQIFIGDVHVGGCDDLYALDRE 72 (79)
T ss_pred HhCCCCcCEEEECCEEEcChHHHHHHHHc
Confidence 34467889998888888777666655443
No 94
>PF14420 Clr5: Clr5 domain
Probab=38.63 E-value=50 Score=16.73 Aligned_cols=27 Identities=4% Similarity=0.079 Sum_probs=16.6
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q psy9882 26 RAIGRYLARQAGLYGMDGPEMDMKIDMI 53 (81)
Q Consensus 26 ~aI~~yL~~~~~l~~~~~~e~~a~v~~~ 53 (81)
..|.+++.+.||+.+....- +.++..|
T Consensus 24 ~~v~~~M~~~~~F~at~rqy-~~r~~~W 50 (54)
T PF14420_consen 24 EEVMEIMKEEHGFKATKRQY-KRRFKKW 50 (54)
T ss_pred HHHHHHHHHHhCCCcCHHHH-HHHHHHc
Confidence 45777788888888764333 3444444
No 95
>cd03190 GST_C_ECM4_like GST_C family, ECM4-like subfamily; composed of predominantly uncharacterized and taxonomically diverse proteins with similarity to the translation product of the Saccharomyces cerevisiae gene ECM4. ECM4, a gene of unknown function, is involved in cell surface biosynthesis and architecture. S. cerevisiae ECM4 mutants show increased amounts of the cell wall hexose, N-acetylglucosamine. More recently, global gene expression analysis shows that ECM4 is upregulated during genotoxic conditions and together with the expression profiles of 18 other genes could potentially differentiate between genotoxic and cytotoxic insults in yeast.
Probab=38.15 E-value=50 Score=19.67 Aligned_cols=18 Identities=22% Similarity=0.138 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHhhhh
Q psy9882 47 DMKIDMIVDTIDDMRQGK 64 (81)
Q Consensus 47 ~a~v~~~~~~~~d~~~~~ 64 (81)
++++++|++|..+.+...
T Consensus 5 ~a~i~~~~~~~~~~~~~~ 22 (142)
T cd03190 5 RSEIDELNEWIYDNINNG 22 (142)
T ss_pred HHHHHHHHHHHHHHHhhH
Confidence 688999999988766543
No 96
>PRK10329 glutaredoxin-like protein; Provisional
Probab=37.75 E-value=45 Score=18.18 Aligned_cols=16 Identities=13% Similarity=0.413 Sum_probs=12.6
Q ss_pred CCCCCCcEEEeCCeEe
Q psy9882 7 YPFGKVPCIEINGVQY 22 (81)
Q Consensus 7 ~P~gkvP~L~~~~~~l 22 (81)
++...||+++.++..+
T Consensus 46 ~g~~~vPvv~i~~~~~ 61 (81)
T PRK10329 46 QGFRQLPVVIAGDLSW 61 (81)
T ss_pred cCCCCcCEEEECCEEE
Confidence 5778999999887543
No 97
>cd03191 GST_C_Zeta GST_C family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates, but display modest GSH peroxidase activity. They are also implicated in the detoxification of th
Probab=36.38 E-value=55 Score=18.48 Aligned_cols=13 Identities=8% Similarity=0.069 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHH
Q psy9882 47 DMKIDMIVDTIDD 59 (81)
Q Consensus 47 ~a~v~~~~~~~~d 59 (81)
++++++|+.++++
T Consensus 4 ra~~~~w~~~~~~ 16 (121)
T cd03191 4 RARVRALALIIAC 16 (121)
T ss_pred HHHHHHHHHHHHc
Confidence 5666666666653
No 98
>cd03187 GST_C_Phi GST_C family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes a
Probab=33.57 E-value=89 Score=17.28 Aligned_cols=13 Identities=0% Similarity=0.069 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHH
Q psy9882 47 DMKIDMIVDTIDD 59 (81)
Q Consensus 47 ~a~v~~~~~~~~d 59 (81)
++++.+|+.+...
T Consensus 3 ra~~~~~l~~~~~ 15 (118)
T cd03187 3 RAIVEQWLEVESH 15 (118)
T ss_pred hHHHHHHHHHHHh
Confidence 4555555555443
No 99
>PF12728 HTH_17: Helix-turn-helix domain
Probab=32.12 E-value=67 Score=15.46 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=18.7
Q ss_pred CCCCcEEEeCCeEeecHHHHHHHHHH
Q psy9882 9 FGKVPCIEINGVQYHQSRAIGRYLAR 34 (81)
Q Consensus 9 ~gkvP~L~~~~~~l~eS~aI~~yL~~ 34 (81)
.|.+|.+..++...+.-..|.+|+.+
T Consensus 24 ~g~i~~~~~g~~~~~~~~~l~~~~~~ 49 (51)
T PF12728_consen 24 QGKIPPFKIGRKWRIPKSDLDRWLER 49 (51)
T ss_pred cCCCCeEEeCCEEEEeHHHHHHHHHh
Confidence 46777777666677777777777765
No 100
>cd03203 GST_C_Lambda GST_C family, Class Lambda subfamily; composed of plant-specific class Lambda GSTs. GSTs are cytosolic, usually dimeric, proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Lambda subfamily was recently discovered, together with dehydroascorbate reductases (DHARs), as two outlying groups of the GST superfamily in Arabidopsis thaliana, which contain conserved active site cysteines. Characterization of recombinant A. thaliana proteins show that Lambda class GSTs are monomeric, similar
Probab=30.15 E-value=1.1e+02 Score=17.47 Aligned_cols=15 Identities=13% Similarity=0.062 Sum_probs=11.8
Q ss_pred CHHHHHHHHHHHHHHH
Q psy9882 42 DGPEMDMKIDMIVDTI 57 (81)
Q Consensus 42 ~~~e~~a~v~~~~~~~ 57 (81)
|+.+ |+.+++|+.+.
T Consensus 1 d~~~-ra~~~~~~~~~ 15 (120)
T cd03203 1 DPAK-REFADELLAYT 15 (120)
T ss_pred CHHH-HHHHHHHHHHH
Confidence 4556 89999998884
No 101
>PF12622 NpwBP: mRNA biogenesis factor
Probab=29.51 E-value=31 Score=17.41 Aligned_cols=10 Identities=40% Similarity=0.657 Sum_probs=7.8
Q ss_pred ccCCCCCCcE
Q psy9882 5 NHYPFGKVPC 14 (81)
Q Consensus 5 ~~~P~gkvP~ 14 (81)
..||+|++|-
T Consensus 10 ~~NP~G~~P~ 19 (48)
T PF12622_consen 10 ELNPLGKPPP 19 (48)
T ss_pred ccCCCCCCCC
Confidence 4689998884
No 102
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=29.14 E-value=90 Score=16.91 Aligned_cols=19 Identities=26% Similarity=0.127 Sum_probs=14.6
Q ss_pred cCCCCCCcEEEeCCeEeec
Q psy9882 6 HYPFGKVPCIEINGVQYHQ 24 (81)
Q Consensus 6 ~~P~gkvP~L~~~~~~l~e 24 (81)
.++..+||++..|+..+.-
T Consensus 48 ~~g~~tvP~I~i~~~~igg 66 (80)
T COG0695 48 GKGQRTVPQIFIGGKHVGG 66 (80)
T ss_pred hCCCCCcCEEEECCEEEeC
Confidence 3478899999998876654
No 103
>KOG2828|consensus
Probab=28.68 E-value=20 Score=26.14 Aligned_cols=55 Identities=16% Similarity=0.273 Sum_probs=33.4
Q ss_pred CcEEEeCCeEeecHHHHHHHHHHhcC---CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhHhH
Q psy9882 12 VPCIEINGVQYHQSRAIGRYLARQAG---LYGMDGPEMDMKIDMIVDTIDDMRQGKDIIQSY 70 (81)
Q Consensus 12 vP~L~~~~~~l~eS~aI~~yL~~~~~---l~~~~~~e~~a~v~~~~~~~~d~~~~~~~~~~~ 70 (81)
||.|..+ .-+..|.|=+.|+...+| |+|+++.+ |+ .+.++-++.-..+.+....|
T Consensus 387 VP~l~~g-sgVvttrah~~y~VTEhGiA~L~Gks~rq-Ra--yElI~i~~p~dre~L~k~af 444 (454)
T KOG2828|consen 387 VPTLKMG-SGVVTTRAHLDYLVTEHGIADLWGKSPRQ-RA--YELIQICAPPDREALLKAAF 444 (454)
T ss_pred ccccccc-CceeeeccceeEEEecccHHHHhCCCHHH-HH--HHHHHhhCCchHHHHHHHHH
Confidence 6766653 225567788889998886 89998766 54 45555554333333333333
No 104
>PF11588 DUF3243: Protein of unknown function (DUF3243); InterPro: IPR021637 This family of proteins with unknown function includes uncharacterised proteins ymfJ and yflH. The family appears to be restricted to Firmicutes.; PDB: 3D0W_B.
Probab=28.25 E-value=88 Score=17.63 Aligned_cols=30 Identities=20% Similarity=0.238 Sum_probs=15.9
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHH
Q psy9882 26 RAIGRYLARQAGLYGMDGPEMDMKIDMIVDTID 58 (81)
Q Consensus 26 ~aI~~yL~~~~~l~~~~~~e~~a~v~~~~~~~~ 58 (81)
.-|-.||++. ..|+++++ +..-+-|--...
T Consensus 36 ~~iGdyLA~~--vdP~N~Ee-rlLkELW~va~e 65 (81)
T PF11588_consen 36 YQIGDYLAKN--VDPKNPEE-RLLKELWDVADE 65 (81)
T ss_dssp HHHHHHHHT-------SHHH-HHHHHHHHC--H
T ss_pred HHHHHHHHhc--CCCCCHHH-HHHHHHHHhCCH
Confidence 3466788875 88888888 777777754433
No 105
>cd03192 GST_C_Sigma_like GST_C family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi, and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition
Probab=27.82 E-value=88 Score=17.02 Aligned_cols=17 Identities=41% Similarity=0.728 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHhhh
Q psy9882 47 DMKIDMIVDTIDDMRQG 63 (81)
Q Consensus 47 ~a~v~~~~~~~~d~~~~ 63 (81)
++++++|++...|++.+
T Consensus 3 ~~~v~~~~~~~~d~~~~ 19 (104)
T cd03192 3 AARVDALVDTIADLRAE 19 (104)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 67788888887777664
No 106
>cd03186 GST_C_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=27.65 E-value=86 Score=17.20 Aligned_cols=18 Identities=6% Similarity=0.123 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q psy9882 44 PEMDMKIDMIVDTIDDMRQ 62 (81)
Q Consensus 44 ~e~~a~v~~~~~~~~d~~~ 62 (81)
.+ ++++..|+++.+..+.
T Consensus 2 ~~-ra~~r~w~~~~~~~~~ 19 (107)
T cd03186 2 VA-RARSRLLMHRIEQDWY 19 (107)
T ss_pred hH-HHHHHHHHHHHHHHHH
Confidence 35 7888888888765443
No 107
>cd03185 GST_C_Tau GST_C family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropi
Probab=26.42 E-value=1e+02 Score=17.34 Aligned_cols=16 Identities=19% Similarity=0.019 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHhh
Q psy9882 47 DMKIDMIVDTIDDMRQ 62 (81)
Q Consensus 47 ~a~v~~~~~~~~d~~~ 62 (81)
++++.+|+++.+....
T Consensus 4 ra~~~~w~~~~~~~~~ 19 (126)
T cd03185 4 RAVARFWAAFIDDKLF 19 (126)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7888888888765444
No 108
>PF04358 DsrC: DsrC like protein; InterPro: IPR007453 DsrC (P45573 from SWISSPROT) has been observed to co-purify with Desulphovibrio vulgaris dissimilatory sulphite reductase []. However, DsrC appears to be only loosely associated to the sulphite reductase, which suggests that it may not be an integral part of the dissimilatory sulphite reductase. Many proteins in this entry are found in organisms such as Escherichia coli and Haemophilus influenzae which do not contain dissimilatory sulphite reductases but can synthesise assimilatory sirohaem sulphite and nitrite reductases. It is speculated that DsrC may be involved in the assembly, folding or stabilisation of sirohaem proteins []. The strictly conserved cysteine in the C terminus suggests that DsrC may have a catalytic function in the metabolism of sulphur compounds []. Also included in this entry is TusE, a partner to TusBCD in a sulphur relay system for 2-thiouridine biosynthesis, a tRNA base modification process. Many proteins in this entry are annotated as the third (gamma) subunit of dissimilatory sulphite reductase ; PDB: 2V4J_F 2A5W_C 1SAU_A 1JI8_A 1YX3_A.
Probab=24.71 E-value=1.6e+02 Score=17.34 Aligned_cols=43 Identities=16% Similarity=0.270 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHH
Q psy9882 25 SRAIGRYLARQAGLYGMDGPEMDMKIDMIVDTIDDMRQGKDIIQSYRTL 73 (81)
Q Consensus 25 S~aI~~yL~~~~~l~~~~~~e~~a~v~~~~~~~~d~~~~~~~~~~~~~~ 73 (81)
|..|+..||+.-|+. -++.. ..++.++.++..+....+..+.+
T Consensus 24 ~eevA~~lA~~egI~-Ltd~H-----W~vI~flR~~y~~~~~~P~~R~l 66 (109)
T PF04358_consen 24 NEEVAEALAKEEGIE-LTDEH-----WEVIRFLRDYYQEYGVSPAIRML 66 (109)
T ss_dssp -HHHHHHHHHCTT-S---HHH-----HHHHHHHHHHHHHHSS---HHHH
T ss_pred CHHHHHHHHHHcCCC-CCHHH-----HHHHHHHHHHHHHHCCCCcHHHH
Confidence 578899999987765 33333 34455555555544333333333
No 109
>TIGR03342 dsrC_tusE_dsvC sulfur relay protein, TusE/DsrC/DsvC family. Members of this protein family may be described as TusE, a partner to TusBCD in a sulfur relay system for 2-thiouridine biosynthesis, a tRNA base modification process. Other members are DsrC, a functionally similar protein in species where the sulfur relay system exists primarily for sulfur metabolism rather than tRNA base modification. Some members of this family are known explicitly as the gamma subunit of sulfite reductases.
Probab=23.16 E-value=1.7e+02 Score=17.23 Aligned_cols=34 Identities=15% Similarity=0.246 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHhhhh
Q psy9882 25 SRAIGRYLARQAGLYGMDGPEMDMKIDMIVDTIDDMRQGK 64 (81)
Q Consensus 25 S~aI~~yL~~~~~l~~~~~~e~~a~v~~~~~~~~d~~~~~ 64 (81)
|..|+..||+..|+- -++.. ..++.++.++..+.
T Consensus 23 ~e~vA~~lA~~egie-LT~~H-----w~vI~~lR~~y~e~ 56 (108)
T TIGR03342 23 SEDVAEALAEEEGIE-LTEAH-----WEVINFLRDFYAEY 56 (108)
T ss_pred CHHHHHHHHHHcCCC-CCHHH-----HHHHHHHHHHHHHH
Confidence 578888999987752 33333 33445555544443
No 110
>PRK10667 Hha toxicity attenuator; Provisional
Probab=22.94 E-value=1.4e+02 Score=18.13 Aligned_cols=29 Identities=21% Similarity=0.236 Sum_probs=14.0
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Q psy9882 28 IGRYLARQAGLYGMDGPEMDMKIDMIVDTI 57 (81)
Q Consensus 28 I~~yL~~~~~l~~~~~~e~~a~v~~~~~~~ 57 (81)
|=+||++.|.|++..... ...+..|...-
T Consensus 76 ideYLDeTy~LF~sy~I~-~~dl~~W~k~~ 104 (122)
T PRK10667 76 IDEYLDDTYMLFSSYGIN-DQDLQKWRKSG 104 (122)
T ss_pred HHHHHHHHHHHhcCCCCC-HHHHHHHHHHH
Confidence 445666666555543332 34444454433
No 111
>cd03188 GST_C_Beta GST_C family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site for
Probab=20.62 E-value=1e+02 Score=16.87 Aligned_cols=16 Identities=0% Similarity=-0.012 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHhh
Q psy9882 47 DMKIDMIVDTIDDMRQ 62 (81)
Q Consensus 47 ~a~v~~~~~~~~d~~~ 62 (81)
++++++|+.+....+.
T Consensus 3 ra~~~~w~~~~~~~~~ 18 (114)
T cd03188 3 RARLLEWLNFLSSELH 18 (114)
T ss_pred HHHHHHHHHHHhhhhc
Confidence 6778888888865444
No 112
>PF10757 YbaJ: Biofilm formation regulator YbaJ; InterPro: IPR019693 YbaJ regulates biofilm formation. It also has an important role in the regulation of motility in the biofilm. YbaJ functions in increasing conjugation, aggregation and decreasing the motility, resulting in an increase of biofilm [].
Probab=20.17 E-value=1.6e+02 Score=17.89 Aligned_cols=14 Identities=29% Similarity=0.449 Sum_probs=6.5
Q ss_pred HHHHHHHhcCCCCC
Q psy9882 28 IGRYLARQAGLYGM 41 (81)
Q Consensus 28 I~~yL~~~~~l~~~ 41 (81)
|=+||++.|.|++.
T Consensus 76 ideYLDeTy~LFss 89 (122)
T PF10757_consen 76 IDEYLDETYMLFSS 89 (122)
T ss_pred HHHHHHHHHHHhcC
Confidence 33455555544443
Done!