RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9882
(81 letters)
>gnl|CDD|239337 cd03039, GST_N_Sigma_like, GST_N family, Class Sigma_like;
composed of GSTs belonging to class Sigma and similar
proteins, including GSTs from class Mu, Pi and Alpha.
GSTs are cytosolic dimeric proteins involved in
cellular detoxification by catalyzing the conjugation
of glutathione (GSH) with a wide range of endogenous
and xenobiotic alkylating agents, including
carcinogens, therapeutic drugs, environmental toxins
and products of oxidative stress. The GST fold contains
an N-terminal TRX-fold domain and a C-terminal alpha
helical domain, with an active site located in a cleft
between the two domains. Vertebrate class Sigma GSTs
are characterized as GSH-dependent hematopoietic
prostaglandin (PG) D synthases and are responsible for
the production of PGD2 by catalyzing the isomerization
of PGH2. The functions of PGD2 include the maintenance
of body temperature, inhibition of platelet
aggregation, bronchoconstriction, vasodilation and
mediation of allergy and inflammation. Other class
Sigma members include the class II insect GSTs,
S-crystallins from cephalopods and 28-kDa GSTs from
parasitic flatworms. Drosophila GST2 is associated with
indirect flight muscle and exhibits preference for
catalyzing GSH conjugation to lipid peroxidation
products, indicating an anti-oxidant role. S-crystallin
constitutes the major lens protein in cephalopod eyes
and is responsible for lens transparency and proper
refractive index. The 28-kDa GST from Schistosoma is a
multifunctional enzyme, exhibiting GSH transferase, GSH
peroxidase and PGD2 synthase activities, and may play
an important role in host-parasite interactions. Also
members are novel GSTs from the fungus Cunninghamella
elegans, designated as class Gamma, and from the
protozoan Blepharisma japonicum, described as a
light-inducible GST.
Length = 72
Score = 47.9 bits (115), Expect = 4e-09
Identities = 16/28 (57%), Positives = 21/28 (75%)
Query: 7 YPFGKVPCIEINGVQYHQSRAIGRYLAR 34
PFG++P +EI+G + QS AI RYLAR
Sbjct: 45 LPFGQLPVLEIDGKKLTQSNAILRYLAR 72
>gnl|CDD|239351 cd03053, GST_N_Phi, GST_N family, Class Phi subfamily; composed
of plant-specific class Phi GSTs and related fungal and
bacterial proteins. GSTs are cytosolic dimeric proteins
involved in cellular detoxification by catalyzing the
conjugation of glutathione (GSH) with a wide range of
endogenous and xenobiotic alkylating agents, including
carcinogens, therapeutic drugs, environmental toxins
and products of oxidative stress. The GST fold contains
an N-terminal TRX-fold domain and a C-terminal alpha
helical domain, with an active site located in a cleft
between the two domains. The class Phi GST subfamily
has experience extensive gene duplication. The
Arabidopsis and Oryza genomes contain 13 and 16 Phi
GSTs, respectively. They are primarily responsible for
herbicide detoxification together with class Tau GSTs,
showing class specificity in substrate preference. Phi
enzymes are highly reactive toward chloroacetanilide
and thiocarbamate herbicides. Some Phi GSTs have other
functions including transport of flavonoid pigments to
the vacuole, shoot regeneration and GSH peroxidase
activity.
Length = 76
Score = 44.2 bits (105), Expect = 1e-07
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 5 NHYPFGKVPCIEINGVQYHQSRAIGRYLARQ 35
PFG++P +E ++ +SRAI RYLA +
Sbjct: 46 ARNPFGQIPALEDGDLKLFESRAITRYLAEK 76
>gnl|CDD|238319 cd00570, GST_N_family, Glutathione S-transferase (GST) family,
N-terminal domain; a large, diverse group of cytosolic
dimeric proteins involved in cellular detoxification by
catalyzing the conjugation of glutathione (GSH) with a
wide range of endogenous and xenobiotic alkylating
agents, including carcinogens, therapeutic drugs,
environmental toxins and products of oxidative stress.
In addition, GSTs also show GSH peroxidase activity and
are involved in the synthesis of prostaglandins and
leukotrienes. This family, also referred to as soluble
GSTs, is the largest family of GSH transferases and is
only distantly related to the mitochondrial GSTs (GSTK
subfamily, a member of the DsbA family). Soluble GSTs
bear no structural similarity to microsomal GSTs (MAPEG
family) and display additional activities unique to
their group, such as catalyzing thiolysis, reduction
and isomerization of certain compounds. The GST fold
contains an N-terminal TRX-fold domain and a C-terminal
alpha helical domain, with an active site located in a
cleft between the two domains. Based on sequence
similarity, different classes of GSTs have been
identified, which display varying tissue distribution,
substrate specificities and additional specific
activities. In humans, GSTs display polymorphisms which
may influence individual susceptibility to diseases
such as cancer, arthritis, allergy and sclerosis. Some
GST family members with non-GST functions include
glutaredoxin 2, the CLIC subfamily of anion channels,
prion protein Ure2p, crystallins, metaxin 2 and
stringent starvation protein A.
Length = 71
Score = 43.3 bits (103), Expect = 2e-07
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 8 PFGKVPCIEINGVQYHQSRAIGRYLA 33
P GKVP +E G+ +S AI YLA
Sbjct: 46 PLGKVPVLEDGGLVLTESLAILEYLA 71
>gnl|CDD|223698 COG0625, Gst, Glutathione S-transferase [Posttranslational
modification, protein turnover, chaperones].
Length = 211
Score = 41.7 bits (98), Expect = 4e-06
Identities = 14/42 (33%), Positives = 17/42 (40%), Gaps = 4/42 (9%)
Query: 8 PFGKVPCIEI-NGVQYHQSRAIGRYLAR---QAGLYGMDGPE 45
P GKVP + +G +S AI YLA L D
Sbjct: 47 PLGKVPALVDDDGEVLTESGAILEYLAERYPGPPLLPADPLA 88
>gnl|CDD|239348 cd03050, GST_N_Theta, GST_N family, Class Theta subfamily;
composed of eukaryotic class Theta GSTs and bacterial
dichloromethane (DCM) dehalogenase. GSTs are cytosolic
dimeric proteins involved in cellular detoxification by
catalyzing the conjugation of glutathione (GSH) with a
wide range of endogenous and xenobiotic alkylating
agents, including carcinogens, therapeutic drugs,
environmental toxins and products of oxidative stress.
The GST fold contains an N-terminal TRX-fold domain and
a C-terminal alpha helical domain, with an active site
located in a cleft between the two domains. Mammalian
class Theta GSTs show poor GSH conjugating activity
towards the standard substrates, CDNB and ethacrynic
acid, differentiating them from other mammalian GSTs.
GSTT1-1 shows similar cataytic activity as bacterial
DCM dehalogenase, catalyzing the GSH-dependent
hydrolytic dehalogenation of dihalomethanes. This is an
essential process in methylotrophic bacteria to enable
them to use chloromethane and DCM as sole carbon and
energy sources. The presence of polymorphisms in human
GSTT1-1 and its relationship to the onset of diseases
including cancer is subject of many studies. Human
GSTT2-2 exhibits a highly specific sulfatase activity,
catalyzing the cleavage of sulfate ions from aralkyl
sufate esters, but not from aryl or alkyl sulfate
esters.
Length = 76
Score = 38.0 bits (89), Expect = 3e-05
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 8 PFGKVPCIEINGVQYHQSRAIGRYLARQ 35
PFGKVP I +S AI RYLAR+
Sbjct: 48 PFGKVPAIVDGDFTLAESVAILRYLARK 75
>gnl|CDD|239375 cd03077, GST_N_Alpha, GST_N family, Class Alpha subfamily; GSTs
are cytosolic dimeric proteins involved in cellular
detoxification by catalyzing the conjugation of
glutathione (GSH) with a wide range of endogenous and
xenobiotic alkylating agents, including carcinogens,
therapeutic drugs, environmental toxins and products of
oxidative stress. The GST fold contains an N-terminal
TRX-fold domain and a C-terminal alpha helical domain,
with an active site located in a cleft between the two
domains. The class Alpha subfamily is composed of
eukaryotic GSTs which can form homodimer and
heterodimers. There are at least six types of class
Alpha GST subunits in rats, four of which have human
counterparts, resulting in many possible isoenzymes
with different activities, tissue distribution and
substrate specificities. Human GSTA1-1 and GSTA2-2 show
high GSH peroxidase activity. GSTA3-3 catalyzes the
isomerization of intermediates in steroid hormone
biosynthesis. GSTA4-4 preferentially catalyzes the GSH
conjugation of alkenals.
Length = 79
Score = 36.0 bits (83), Expect = 2e-04
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 9 FGKVPCIEINGVQYHQSRAIGRYLARQAGLY 39
F +VP +EI+G++ Q+RAI Y+A + LY
Sbjct: 49 FQQVPMVEIDGMKLVQTRAILNYIAGKYNLY 79
>gnl|CDD|205595 pfam13417, GST_N_3, Glutathione S-transferase, N-terminal domain.
Length = 75
Score = 35.6 bits (83), Expect = 2e-04
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 8 PFGKVPCIEINGVQYHQSRAIGRYLARQAG 37
P GKVP + +G S AI YL
Sbjct: 43 PLGKVPVLVDDGEVLTDSLAIIEYLEELFP 72
>gnl|CDD|217234 pfam02798, GST_N, Glutathione S-transferase, N-terminal domain.
Function: conjugation of reduced glutathione to a
variety of targets. Also included in the alignment, but
are not GSTs: * S-crystallins from squid. Similarity to
GST previously noted. * Eukaryotic elongation factors
1-gamma. Not known to have GST activity; similarity not
previously recognised. * HSP26 family of stress-related
proteins. including auxin-regulated proteins in plants
and stringent starvation proteins in E. coli. Not known
to have GST activity. Similarity not previously
recognised. The glutathione molecule binds in a cleft
between N and C-terminal domains - the catalytically
important residues are proposed to reside in the
N-terminal domain.
Length = 74
Score = 34.6 bits (80), Expect = 6e-04
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 10 GKVPCIEINGVQYHQSRAIGRYLAR 34
G+VP +E G + +S AI RYLAR
Sbjct: 50 GQVPALEDGGKKLTESLAIARYLAR 74
>gnl|CDD|239374 cd03076, GST_N_Pi, GST_N family, Class Pi subfamily; GSTs are
cytosolic dimeric proteins involved in cellular
detoxification by catalyzing the conjugation of
glutathione (GSH) with a wide range of endogenous and
xenobiotic alkylating agents, including carcinogens,
therapeutic drugs, environmental toxins and products of
oxidative stress. The GST fold contains an N-terminal
TRX-fold domain and a C-terminal alpha helical domain,
with an active site located in a cleft between the two
domains. Class Pi GST is a homodimeric eukaryotic
protein. The human GSTP1 is mainly found in
erythrocytes, kidney, placenta and fetal liver. It is
involved in stress responses and in cellular
proliferation pathways as an inhibitor of JNK (c-Jun
N-terminal kinase). Following oxidative stress,
monomeric GSTP1 dissociates from JNK and dimerizes,
losing its ability to bind JNK and causing an increase
in JNK activity, thereby promoting apoptosis. GSTP1 is
expressed in various tumors and is the predominant GST
in a wide range of cancer cells. It has been implicated
in the development of multidrug-resistant tumours.
Length = 73
Score = 33.8 bits (78), Expect = 0.001
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 8 PFGKVPCIEINGVQYHQSRAIGRYLAR 34
FG++PC + + QS AI R+L R
Sbjct: 46 LFGQLPCFKDGDLTLVQSNAILRHLGR 72
>gnl|CDD|222110 pfam13409, GST_N_2, Glutathione S-transferase, N-terminal domain.
This family is closely related to pfam02798.
Length = 68
Score = 33.3 bits (77), Expect = 0.001
Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 8 PFGKVPCIEI-NGVQYHQSRAIGRYLARQ 35
P GKVP + + +G S AI YL
Sbjct: 40 PLGKVPVLVLDDGEVITDSLAILEYLEEL 68
>gnl|CDD|239354 cd03056, GST_N_4, GST_N family, unknown subfamily 4; composed of
uncharacterized bacterial proteins with similarity to
GSTs. GSTs are cytosolic dimeric proteins involved in
cellular detoxification by catalyzing the conjugation
of glutathione (GSH) with a wide range of endogenous
and xenobiotic alkylating agents, including
carcinogens, therapeutic drugs, environmental toxins
and products of oxidative stress. GSTs also show GSH
peroxidase activity and are involved in the synthesis
of prostaglandins and leukotrienes. The GST fold
contains an N-terminal TRX-fold domain and a C-terminal
alpha helical domain, with an active site located in a
cleft between the two domains.
Length = 73
Score = 33.3 bits (77), Expect = 0.002
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 8 PFGKVPCIEINGVQYHQSRAIGRYLA 33
P G+VP +E++G +S AI YLA
Sbjct: 48 PNGEVPVLELDGRVLAESNAILVYLA 73
>gnl|CDD|166114 PLN02473, PLN02473, glutathione S-transferase.
Length = 214
Score = 34.6 bits (79), Expect = 0.002
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 8 PFGKVPCIEINGVQYHQSRAIGRYLARQAGLYGMD 42
PFG+VP IE ++ +SRAI RY A + G D
Sbjct: 50 PFGQVPAIEDGDLKLFESRAIARYYATKYADQGTD 84
>gnl|CDD|173353 PTZ00057, PTZ00057, glutathione s-transferase; Provisional.
Length = 205
Score = 33.8 bits (77), Expect = 0.003
Identities = 17/53 (32%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 8 PFGKVPCIEINGVQYHQSRAIGRYLARQAGLYGMDGPEMDMKIDMIVDTIDDM 60
PF +VP +E++ + + QS+AI RYL+++ + G + + DMI + D+
Sbjct: 55 PFEQVPILEMDNIIFAQSQAIVRYLSKKYKICG-ESELNEFYADMIFCGVQDI 106
>gnl|CDD|239344 cd03046, GST_N_GTT1_like, GST_N family, Saccharomyces cerevisiae
GTT1-like subfamily; composed of predominantly
uncharacterized proteins with similarity to the S.
cerevisiae GST protein, GTT1, and the
Schizosaccharomyces pombe GST-III. GSTs are cytosolic
dimeric proteins involved in cellular detoxification by
catalyzing the conjugation of glutathione (GSH) with a
wide range of endogenous and xenobiotic alkylating
agents, including carcinogens, therapeutic drugs,
environmental toxins and products of oxidative stress.
GSTs also show GSH peroxidase activity and are involved
in the synthesis of prostaglandins and leukotrienes.
The GST fold contains an N-terminal TRX-fold domain and
a C-terminal alpha helical domain, with an active site
located in a cleft between the two domains. GTT1, a
homodimer, exhibits GST activity with standard
substrates and associates with the endoplasmic
reticulum. Its expression is induced after diauxic
shift and remains high throughout the stationary phase.
S. pombe GST-III is implicated in the detoxification of
various metals.
Length = 76
Score = 32.5 bits (75), Expect = 0.004
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 8 PFGKVPCIEINGVQYHQSRAIGRYLARQ 35
P GKVP + + +S AI YLA +
Sbjct: 47 PLGKVPVLVDGDLVLTESAAIILYLAEK 74
>gnl|CDD|166036 PLN02395, PLN02395, glutathione S-transferase.
Length = 215
Score = 32.5 bits (74), Expect = 0.010
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 9/52 (17%)
Query: 8 PFGKVPCIEINGVQYHQSRAIGRYLARQAGLYGMDGPEMDMKIDMIVDTIDD 59
PFG VP I + +SRAI RY A + Y GP D++ TI++
Sbjct: 49 PFGVVPVIVDGDYKIFESRAIMRYYAEK---YRSQGP------DLLGKTIEE 91
>gnl|CDD|239342 cd03044, GST_N_EF1Bgamma, GST_N family, Gamma subunit of
Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma
is part of the eukaryotic translation elongation
factor-1 (EF1) complex which plays a central role in
the elongation cycle during protein biosynthesis. EF1
consists of two functionally distinct units, EF1A and
EF1B. EF1A catalyzes the GTP-dependent binding of
aminoacyl-tRNA to the ribosomal A site concomitant with
the hydrolysis of GTP. The resulting inactive EF1A:GDP
complex is recycled to the active GTP form by the
guanine-nucleotide exchange factor EF1B, a complex
composed of at least two subunits, alpha and gamma.
Metazoan EFB1 contain a third subunit, beta. The EF1B
gamma subunit contains a GST fold consisting of an
N-terminal TRX-fold domain and a C-terminal alpha
helical domain. The GST-like domain of EF1Bgamma is
believed to mediate the dimerization of the EF1
complex, which in yeast is a dimer of the heterotrimer
EF1A:EF1Balpha:EF1Bgamma. In addition to its role in
protein biosynthesis, EF1Bgamma may also display other
functions. The recombinant rice protein has been shown
to possess GSH conjugating activity. The yeast
EF1Bgamma binds membranes in a calcium dependent manner
and is also part of a complex that binds to the msrA
(methionine sulfoxide reductase) promoter suggesting a
function in the regulation of its gene expression.
Length = 75
Score = 31.1 bits (71), Expect = 0.014
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 6 HYPFGKVPCIEI-NGVQYHQSRAIGRYLARQ 35
+P GKVP E +G +S AI Y+A
Sbjct: 45 KFPLGKVPAFEGADGFCLFESNAIAYYVANL 75
>gnl|CDD|239340 cd03042, GST_N_Zeta, GST_N family, Class Zeta subfamily; GSTs are
cytosolic dimeric proteins involved in cellular
detoxification by catalyzing the conjugation of
glutathione (GSH) with a wide range of endogenous and
xenobiotic alkylating agents, including carcinogens,
therapeutic drugs, environmental toxins and products of
oxidative stress. The GST fold contains an N-terminal
TRX-fold domain and a C-terminal alpha helical domain,
with an active site located in a cleft between the two
domains. Class Zeta GSTs, also known as
maleylacetoacetate (MAA) isomerases, catalyze the
isomerization of MAA to fumarylacetoacetate, the
penultimate step in tyrosine/phenylalanine catabolism,
using GSH as a cofactor. They show little
GSH-conjugating activity towards traditional GST
substrates but display modest GSH peroxidase activity.
They are also implicated in the detoxification of the
carcinogen dichloroacetic acid by catalyzing its
dechlorination to glyoxylic acid.
Length = 73
Score = 29.8 bits (68), Expect = 0.030
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 8 PFGKVPCIEINGVQYHQSRAIGRYL 32
P G VP + I+G+ QS AI YL
Sbjct: 48 PQGLVPTLVIDGLVLTQSLAIIEYL 72
>gnl|CDD|239352 cd03054, GST_N_Metaxin, GST_N family, Metaxin subfamily; composed
of metaxins and related proteins. Metaxin 1 is a
component of a preprotein import complex of the
mitochondrial outer membrane. It extends to the cytosol
and is anchored to the mitochondrial membrane through
its C-terminal domain. In mice, metaxin is required for
embryonic development. In humans, alterations in the
metaxin gene may be associated with Gaucher disease.
Metaxin 2 binds to metaxin 1 and may also play a role
in protein translocation into the mitochondria. Genome
sequencing shows that a third metaxin gene also exists
in zebrafish, Xenopus, chicken and mammals. Sequence
analysis suggests that all three metaxins share a
common ancestry and that they possess similarity to
GSTs. Also included in the subfamily are
uncharacterized proteins with similarity to metaxins,
including a novel GST from Rhodococcus with toluene
o-monooxygenase and glutamylcysteine synthetase
activities.
Length = 72
Score = 29.5 bits (67), Expect = 0.043
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 8 PFGKVPCIEINGVQYHQSRAIGRYLARQ 35
P GK+P +E+NG + S I YL ++
Sbjct: 45 PTGKLPFLELNGEKIADSEKIIEYLKKK 72
>gnl|CDD|234570 PRK00009, PRK00009, phosphoenolpyruvate carboxylase; Reviewed.
Length = 911
Score = 30.9 bits (71), Expect = 0.045
Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 12/57 (21%)
Query: 32 LARQAGLYGMDGPEMDMKIDMIV---DTIDDMRQGKDIIQS------YRTLLSQTGG 79
L ++AGL + +V +TI+D+R D+++ YR L++ G
Sbjct: 507 LLKEAGLLDPAAARAPL---PVVPLFETIEDLRNAADVMRQLLSLPWYRGLIAGRGN 560
>gnl|CDD|237514 PRK13804, ileS, isoleucyl-tRNA synthetase; Provisional.
Length = 961
Score = 29.9 bits (68), Expect = 0.085
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 4/26 (15%)
Query: 52 MIVDTIDDMRQGKDIIQ----SYRTL 73
VD DD R GK+I++ +YR L
Sbjct: 658 ASVDYSDDQRIGKEILKQVSETYRKL 683
>gnl|CDD|239347 cd03049, GST_N_3, GST_N family, unknown subfamily 3; composed of
uncharacterized bacterial proteins with similarity to
GSTs. GSTs are cytosolic dimeric proteins involved in
cellular detoxification by catalyzing the conjugation
of glutathione (GSH) with a wide range of endogenous
and xenobiotic alkylating agents, including
carcinogens, therapeutic drugs, environmental toxins
and products of oxidative stress. GSTs also show GSH
peroxidase activity and are involved in the synthesis
of prostaglandins and leukotrienes. The GST fold
contains an N-terminal TRX-fold domain and a C-terminal
alpha helical domain, with an active site located in a
cleft between the two domains.
Length = 73
Score = 28.0 bits (63), Expect = 0.18
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 4 VNHYPFGKVPCIEIN-GVQYHQSRAIGRYL 32
+ P GK+P + ++ G SR I YL
Sbjct: 43 LAVNPLGKIPALVLDDGEALFDSRVICEYL 72
>gnl|CDD|233333 TIGR01262, maiA, maleylacetoacetate isomerase.
Maleylacetoacetate isomerase is an enzyme of tyrosine
and phenylalanine catabolism. It requires glutathione
and belongs by homology to the zeta family of
glutathione S-transferases. The enzyme (EC 5.2.1.2) is
described as active also on maleylpyruvate, and the
example from a Ralstonia sp. catabolic plasmid is
described as a maleylpyruvate isomerase involved in
gentisate catabolism [Energy metabolism, Amino acids
and amines].
Length = 210
Score = 28.8 bits (65), Expect = 0.18
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 8 PFGKVPCIEINGVQYHQSRAIGRYLARQ 35
P G VP ++I+G QS AI YL
Sbjct: 48 PQGLVPTLDIDGEVLTQSLAIIEYLEET 75
>gnl|CDD|225227 COG2352, Ppc, Phosphoenolpyruvate carboxylase [Energy production
and conversion].
Length = 910
Score = 29.2 bits (66), Expect = 0.19
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 8/53 (15%)
Query: 32 LARQAGLYGMDGPEMDMKIDMIVDTIDDMRQGKDIIQS------YRTLLSQTG 78
L ++AGL D + + + +TI+D+ D++ YR LL+ G
Sbjct: 506 LLKEAGLV--DPERARVPVVPLFETIEDLDNAPDVMTQLLNLPLYRALLAGRG 556
>gnl|CDD|239345 cd03047, GST_N_2, GST_N family, unknown subfamily 2; composed of
uncharacterized bacterial proteins with similarity to
GSTs. GSTs are cytosolic dimeric proteins involved in
cellular detoxification by catalyzing the conjugation
of glutathione (GSH) with a wide range of endogenous
and xenobiotic alkylating agents, including
carcinogens, therapeutic drugs, environmental toxins
and products of oxidative stress. GSTs also show GSH
peroxidase activity and are involved in the synthesis
of prostaglandins and leukotrienes. The GST fold
contains an N-terminal TRX-fold domain and a C-terminal
alpha helical domain, with an active site located in a
cleft between the two domains. The sequence from
Burkholderia cepacia was identified as part of a gene
cluster involved in the degradation of
2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g.
Class Zeta and Delta) are known to catalyze
dechlorination reactions.
Length = 73
Score = 27.7 bits (62), Expect = 0.27
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 8 PFGKVPCIEINGVQYHQSRAIGRYLA 33
P G+VP +E +S AI RYLA
Sbjct: 48 PNGRVPVLEDGDFVLWESNAILRYLA 73
>gnl|CDD|239353 cd03055, GST_N_Omega, GST_N family, Class Omega subfamily; GSTs
are cytosolic dimeric proteins involved in cellular
detoxification by catalyzing the conjugation of
glutathione (GSH) with a wide range of endogenous and
xenobiotic alkylating agents, including carcinogens,
therapeutic drugs, environmental toxins and products of
oxidative stress. The GST fold contains an N-terminal
TRX-fold domain and a C-terminal alpha helical domain,
with an active site located in a cleft between the two
domains. Class Omega GSTs show little or no
GSH-conjugating activity towards standard GST
substrates. Instead, they catalyze the GSH dependent
reduction of protein disulfides, dehydroascorbate and
monomethylarsonate, activities which are more
characteristic of glutaredoxins. They contain a
conserved cysteine equivalent to the first cysteine in
the CXXC motif of glutaredoxins, which is a redox
active residue capable of reducing GSH mixed disulfides
in a monothiol mechanism. Polymorphisms of the class
Omega GST genes may be associated with the development
of some types of cancer and the age-at-onset of both
Alzheimer's and Parkinson's diseases.
Length = 89
Score = 27.3 bits (61), Expect = 0.39
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 7 YPFGKVPCIEINGVQY-HQSRAIGRYL 32
P GKVP +EI+ + ++S I YL
Sbjct: 62 NPQGKVPALEIDEGKVVYESLIICEYL 88
>gnl|CDD|226028 COG3497, COG3497, Phage tail sheath protein FI [General function
prediction only].
Length = 394
Score = 28.1 bits (63), Expect = 0.42
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 6/46 (13%)
Query: 26 RAIGRYLARQAGLYGMDGPEMDMKIDMIVDTIDDMRQGKDIIQSYR 71
RA R L R L G + D +++ D + G+ +I YR
Sbjct: 327 RAFLRRLWRAGALIG-----FECWYDPELNSADQLLAGR-LIIDYR 366
>gnl|CDD|239378 cd03080, GST_N_Metaxin_like, GST_N family, Metaxin subfamily,
Metaxin-like proteins; a heterogenous group of
proteins, predominantly uncharacterized, with
similarity to metaxins and GSTs. Metaxin 1 is a
component of a preprotein import complex of the
mitochondrial outer membrane. It extends to the cytosol
and is anchored to the mitochondrial membrane through
its C-terminal domain. In mice, metaxin is required for
embryonic development. In humans, alterations in the
metaxin gene may be associated with Gaucher disease.
One characterized member of this subgroup is a novel
GST from Rhodococcus with toluene o-monooxygenase and
gamma-glutamylcysteine synthetase activities. Also
members are the cadmium-inducible lysosomal protein
CDR-1 and its homologs from C. elegans, and the failed
axon connections (fax) protein from Drosophila. CDR-1
is an integral membrane protein that functions to
protect against cadmium toxicity and may also have a
role in osmoregulation to maintain salt balance in C.
elegans. The fax gene of Drosophila was identified as a
genetic modifier of Abelson (Abl) tyrosine kinase. The
fax protein is localized in cellular membranes and is
expressed in embryonic mesoderm and axons of the
central nervous system.
Length = 75
Score = 26.8 bits (60), Expect = 0.50
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 8 PFGKVPCIEINGVQYHQSRAIGRYLARQ 35
P GK+P IE+NG + S I +L +
Sbjct: 46 PKGKLPFIELNGEKIADSELIIDHLEEK 73
>gnl|CDD|198301 cd03192, GST_C_Sigma_like, C-terminal, alpha helical domain of
Class Sigma-like Glutathione S-transferases.
Glutathione S-transferase (GST) C-terminal domain
family, Class Sigma_like; composed of GSTs belonging to
class Sigma and similar proteins, including GSTs from
class Mu, Pi, and Alpha. GSTs are cytosolic dimeric
proteins involved in cellular detoxification by
catalyzing the conjugation of glutathione (GSH) with a
wide range of endogenous and xenobiotic alkylating
agents, including carcinogens, therapeutic drugs,
environmental toxins, and products of oxidative stress.
The GST fold contains an N-terminal thioredoxin-fold
domain and a C-terminal alpha helical domain, with an
active site located in a cleft between the two domains.
GSH binds to the N-terminal domain while the
hydrophobic substrate occupies a pocket in the
C-terminal domain. Vertebrate class Sigma GSTs are
characterized as GSH-dependent hematopoietic
prostaglandin (PG) D synthases and are responsible for
the production of PGD2 by catalyzing the isomerization
of PGH2. The functions of PGD2 include the maintenance
of body temperature, inhibition of platelet
aggregation, bronchoconstriction, vasodilation, and
mediation of allergy and inflammation. Other class
Sigma-like members include the class II insect GSTs,
S-crystallins from cephalopods, nematode-specific GSTs,
and 28-kDa GSTs from parasitic flatworms. Drosophila
GST2 is associated with indirect flight muscle and
exhibits preference for catalyzing GSH conjugation to
lipid peroxidation products, indicating an anti-oxidant
role. S-crystallin constitutes the major lens protein
in cephalopod eyes and is responsible for lens
transparency and proper refractive index. The 28-kDa
GST from Schistosoma is a multifunctional enzyme,
exhibiting GSH transferase, GSH peroxidase, and PGD2
synthase activities, and may play an important role in
host-parasite interactions. Members also include novel
GSTs from the fungus Cunninghamella elegans, designated
as class Gamma, and from the protozoan Blepharisma
japonicum, described as a light-inducible GST.
Length = 104
Score = 26.8 bits (60), Expect = 0.82
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 48 MKIDMIVDTIDDMRQ 62
++D IVDTI D+R
Sbjct: 4 ARVDAIVDTIADLRA 18
>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 237
Score = 26.8 bits (59), Expect = 1.3
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 23 HQSRAIGRYLARQAGLYGMDGPEMDMK---IDMIVDTIDDMRQ 62
Q AIGR L Q L +D P + + I I DTI+ +R+
Sbjct: 143 QQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRE 185
>gnl|CDD|198328 cd10295, GST_C_Sigma, C-terminal, alpha helical domain of Class
Sigma Glutathione S-transferases. Glutathione
S-transferase (GST) C-terminal domain family, Class
Sigma; GSTs are cytosolic dimeric proteins involved in
cellular detoxification by catalyzing the conjugation
of glutathione (GSH) with a wide range of endogenous
and xenobiotic alkylating agents, including
carcinogens, therapeutic drugs, environmental toxins,
and products of oxidative stress. The GST fold contains
an N-terminal thioredoxin-fold domain and a C-terminal
alpha helical domain, with an active site located in a
cleft between the two domains. GSH binds to the
N-terminal domain while the hydrophobic substrate
occupies a pocket in the C-terminal domain. Vertebrate
class Sigma GSTs are characterized as GSH-dependent
hematopoietic prostaglandin (PG) D synthases and are
responsible for the production of PGD2 by catalyzing
the isomerization of PGH2. The functions of PGD2
include the maintenance of body temperature, inhibition
of platelet aggregation, bronchoconstriction,
vasodilation, and mediation of allergy and
inflammation.
Length = 100
Score = 25.5 bits (56), Expect = 2.3
Identities = 7/16 (43%), Positives = 12/16 (75%), Gaps = 1/16 (6%)
Query: 45 EMDM-KIDMIVDTIDD 59
E++ +D +VDT+DD
Sbjct: 1 ELEQCLVDALVDTLDD 16
>gnl|CDD|236561 PRK09550, mtnK, methylthioribose kinase; Reviewed.
Length = 401
Score = 26.0 bits (58), Expect = 2.4
Identities = 8/19 (42%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Query: 17 INGVQYHQ-SRAIGRYLAR 34
I+G +Y + + IG +LAR
Sbjct: 124 IDGKKYPKLAEHIGEFLAR 142
>gnl|CDD|239343 cd03045, GST_N_Delta_Epsilon, GST_N family, Class Delta and
Epsilon subfamily; GSTs are cytosolic dimeric proteins
involved in cellular detoxification by catalyzing the
conjugation of glutathione (GSH) with a wide range of
endogenous and xenobiotic alkylating agents, including
carcinogens, therapeutic drugs, environmental toxins
and products of oxidative stress. GSTs also show GSH
peroxidase activity and are involved in the synthesis
of prostaglandins and leukotrienes. The GST fold
contains an N-terminal TRX-fold domain and a C-terminal
alpha helical domain, with an active site located in a
cleft between the two domains. The class Delta and
Epsilon subfamily is made up primarily of insect GSTs,
which play major roles in insecticide resistance by
facilitating reductive dehydrochlorination of
insecticides or conjugating them with GSH to produce
water-soluble metabolites that are easily excreted.
They are also implicated in protection against cellular
damage by oxidative stress.
Length = 74
Score = 24.9 bits (55), Expect = 2.4
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 8 PFGKVPCIEINGVQYHQSRAIGRYLA 33
P VP + NG +S AI YL
Sbjct: 48 PQHTVPTLVDNGFVLWESHAILIYLV 73
>gnl|CDD|240151 cd05024, S-100A10, S-100A10: A subgroup of the S-100A10 domain
found in proteins similar to S100A10. S100A10 is a
member of the S100 family of EF-hand superfamily of
calcium-binding proteins. Note that the S-100
hierarchy, to which this S-100A10 group belongs,
contains only S-100 EF-hand domains, other EF-hands
have been modeled separately. S100 proteins are
expressed exclusively in vertebrates, and are
implicated in intracellular and extracellular
regulatory activities. A unique feature of S100A10 is
that it contains mutation in both of the calcium
binding sites, making it calcium insensitive. S100A10
has been detected in brain, heart, gastrointestinal
tract, kidney, liver, lung, spleen, testes, epidermis,
aorta, and thymus. Structural data supports the homo-
and hetero-dimeric as well as hetero-tetrameric nature
of the protein. S100A10 has multiple binding partners
in its calcium free state and is therefore involved in
many diverse biological functions.
Length = 91
Score = 25.2 bits (55), Expect = 2.8
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 48 MKIDMIVDTIDDMRQGKDIIQSYRTLLS 75
M +D I+ +DD R GK QS+ +L++
Sbjct: 48 MAVDKIMKDLDDCRDGKVGFQSFFSLIA 75
>gnl|CDD|188709 cd08755, RGS_p115RhoGEF, Regulator of G protein signaling (RGS)
domain found in the Rho guanine nucleotide exchange
factor (GEF), p115 RhoGEF. The RGS (Regulator of
G-protein Signaling) domain is an essential part of the
p115RhoGEF protein, a member of the RhoGEF (Rho guanine
nucleotide exchange factor) subfamily of the RGS protein
family. The RhoGEFs are peripheral membrane proteins
that regulate essential cellular processes, including
cell shape, cell migration, cell cycle progression of
cells, and gene transcription by linking signals from
heterotrimeric G-alpha12/13 protein-coupled receptors to
Rho GTPase activation, leading to various cellular
responses, such as actin reorganization and gene
expression. The RhoGEF subfamily includes p115RhoGEF,
LARG, PDZ-RhoGEF and its rat specific splice variant
GTRAP48. The RGS domain of RhoGEFs has very little
sequence similarity with the canonical RGS domain of the
RGS proteins and is often refered to as RH (RGS
Homology) domain. In addition to being a G-alpha13/12
effector, the p115RhoGEF protein also functions as a
GTPase-activating protein (GAP) for G-alpha13. RGS
proteins play critical regulatory role as GTPase
activating proteins (GAPs) of the heterotrimeric
G-protein G-alpha-subunits. RGS proteins play critical
regulatory role as GTPase activating proteins (GAPs) of
the heterotrimeric G-protein G-alpha-subunits. RGS
proteins regulate many aspects of embryonic development
such as glial differentiation, embryonic axis formation,
skeletal and muscle development, cell migration during
early embryogenesis, as well as apoptosis, cell
proliferation, and modulation of cardiac development.
Length = 193
Score = 25.6 bits (56), Expect = 2.9
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 17 INGVQYHQSRAIGRYLA--RQAGLYGMDGPEMDM 48
+N +Q+ QS AI R L RQ + GM E ++
Sbjct: 88 VNEIQFAQSPAILRQLEDFRQKRMMGMTPNEREL 121
>gnl|CDD|223303 COG0225, MsrA, Peptide methionine sulfoxide reductase
[Posttranslational modification, protein turnover,
chaperones].
Length = 174
Score = 25.3 bits (56), Expect = 3.1
Identities = 8/20 (40%), Positives = 9/20 (45%)
Query: 53 IVDTIDDMRQGKDIIQSYRT 72
I D RQG D YR+
Sbjct: 81 IHDPTSLNRQGNDRGTQYRS 100
>gnl|CDD|220096 pfam09052, SipA, Salmonella invasion protein A. Salmonella
invasion protein A is an actin-binding protein that
contributes to host cytoskeletal rearrangements by
stimulating actin polymerisation and counteracting
F-actin destabilising proteins. Members of this family
possess an all-helical fold consisting of eight
alpha-helices arranged so that six long, amphipathic
helices form a compact fold that surrounds a final,
predominantly hydrophobic helix in the middle of the
molecule.
Length = 674
Score = 25.4 bits (55), Expect = 3.5
Identities = 8/39 (20%), Positives = 18/39 (46%)
Query: 21 QYHQSRAIGRYLARQAGLYGMDGPEMDMKIDMIVDTIDD 59
Y + + + L+R+A L +D ++ D + +D
Sbjct: 607 IYEKLKEVASALSREANLSKIDDTSAELLTDDLDGLKND 645
>gnl|CDD|239452 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, beta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 517
Score = 25.4 bits (56), Expect = 3.5
Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 17/59 (28%)
Query: 26 RAIGRYLARQAGLYGMDGPEM-------------DMKIDMIVDTIDDMRQGKDIIQSYR 71
R + +A AG D E+ +DM T+ DM++ I +S++
Sbjct: 434 RQLPTIIADNAGY---DSAELVAQLRAAHYNGNTTAGLDMRKGTVGDMKE-LGITESFK 488
>gnl|CDD|234212 TIGR03443, alpha_am_amid, L-aminoadipate-semialdehyde dehydrogenase.
Members of this protein family are
L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31),
product of the LYS2 gene. It is also called
alpha-aminoadipate reductase. In fungi, lysine is
synthesized via aminoadipate. Currently, all members of
this family are fungal.
Length = 1389
Score = 25.4 bits (56), Expect = 4.0
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 22 YHQSRAIGRYLARQAGLYGMDG 43
Y QS+ + Y+ R+AG G+ G
Sbjct: 1150 YGQSKWVAEYIIREAGKRGLRG 1171
>gnl|CDD|237511 PRK13796, PRK13796, GTPase YqeH; Provisional.
Length = 365
Score = 25.2 bits (56), Expect = 4.0
Identities = 6/17 (35%), Positives = 13/17 (76%)
Query: 50 IDMIVDTIDDMRQGKDI 66
ID +++ I+ R+G+D+
Sbjct: 147 IDELLEAIEKYREGRDV 163
>gnl|CDD|117534 pfam08968, DUF1885, Domain of unknown function (DUF1885). This
domain is found in a set of hypothetical proteins
produced by bacteria of the Bacillus genus.
Length = 128
Score = 25.2 bits (55), Expect = 4.0
Identities = 9/23 (39%), Positives = 17/23 (73%), Gaps = 3/23 (13%)
Query: 56 TIDDMRQGKDIIQSYRTLLSQTG 78
TI+D+ K +++ Y+T+ S+TG
Sbjct: 16 TIEDV---KQLLEYYKTITSKTG 35
>gnl|CDD|213361 cd12827, EcCorA_ZntB-like_u2, uncharacterized bacterial subfamily
of the Escherichia coli CorA-Salmonella typhimurium ZntB
family. A uncharacterized subfamily of the Escherichia
coli CorA-Salmonella typhimurium ZntB (EcCorA-ZntB_like)
family of the MIT superfamily of essential membrane
proteins involved in transporting divalent cations
(uptake or efflux) across membranes.The EcCorA-ZntB-like
family includes the Mg2+ transporters Escherichia coli
and Salmonella typhimurium CorAs, which can also
transport Co2+, and Ni2+. Structures of the
intracellular domain of EcCorA-ZntB-like family members,
Vibrio parahaemolyticus and Salmonella typhimurium ZntB,
form funnel-shaped homopentamers, the tip of the funnel
is formed from two C-terminal transmembrane (TM) helices
from each monomer, and the large opening of the funnel
from the N-terminal cytoplasmic domains. The GMN
signature motif of the MIT superfamily occurs just after
TM1, mutation within this motif is known to abolish Mg2+
transport through Salmonella typhimurium CorA. Natural
variants such as GVN and GIN, such as occur in some ZntB
family proteins, may be associated with the transport of
different divalent cations, such as zinc and cadmium.
The functional diversity of MIT transporters may also be
due to minor structural differences regulating gating,
substrate selection, and transport.
Length = 289
Score = 25.2 bits (56), Expect = 4.2
Identities = 6/29 (20%), Positives = 15/29 (51%)
Query: 51 DMIVDTIDDMRQGKDIIQSYRTLLSQTGG 79
+++ D I + +Q ++ + Y +LS
Sbjct: 188 ELLEDVIIENKQAIEMAEIYSDILSGLMD 216
>gnl|CDD|214533 smart00137, MAM, Domain in meprin, A5, receptor protein tyrosine
phosphatase mu (and others). Likely to have an
adhesive function. Mutations in the meprin MAM domain
affect noncovalent associations within meprin
oligomers. In receptor tyrosine phosphatase mu-like
molecules the MAM domain is important for homophilic
cell-cell interactions.
Length = 161
Score = 25.0 bits (55), Expect = 4.5
Identities = 10/48 (20%), Positives = 17/48 (35%), Gaps = 5/48 (10%)
Query: 21 QYHQSRAIGRYLARQAGLYGMDGPEMDMKID----MIVDTIDDMRQGK 64
+HQ + R + G+ GP D M +T +G+
Sbjct: 15 GWHQDSNDDGHWERVSSATGIPGPNRDHTTGNGHFMFFET-SSGAEGQ 61
>gnl|CDD|219697 pfam08014, DUF1704, Domain of unknown function (DUF1704). This
family contains many hypothetical proteins.
Length = 348
Score = 24.9 bits (55), Expect = 4.8
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 54 VDTIDDMRQGKDIIQSYRTLLSQTG 78
V +D M +G D I ++R L+ Q G
Sbjct: 227 VIAVDMMLKGADFIDTFRYLVEQYG 251
>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of
polysaccharide transport system. The KpsT/Wzt ABC
transporter subfamily is involved in extracellular
polysaccharide export. Among the variety of
membrane-linked or extracellular polysaccharides
excreted by bacteria, only capsular polysaccharides,
lipopolysaccharides, and teichoic acids have been shown
to be exported by ABC transporters. A typical system is
made of a conserved integral membrane and an ABC. In
addition to these proteins, capsular polysaccharide
exporter systems require two 'accessory' proteins to
perform their function: a periplasmic (E.coli) or a
lipid-anchored outer membrane protein called OMA
(Neisseria meningitidis and Haemophilus influenza) and a
cytoplasmic membrane protein MPA2.
Length = 224
Score = 24.8 bits (55), Expect = 5.1
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 36 AGLYGMDGPEMDMKIDMIVD 55
L G+ E+D KID I++
Sbjct: 109 GRLLGLSRKEIDEKIDEIIE 128
>gnl|CDD|224346 COG1429, CobN, Cobalamin biosynthesis protein CobN and related
Mg-chelatases [Coenzyme metabolism].
Length = 1388
Score = 25.1 bits (55), Expect = 5.2
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 3/32 (9%)
Query: 32 LARQAGLY---GMDGPEMDMKIDMIVDTIDDM 60
L R+ GL G E D D +++ + D
Sbjct: 663 LVRELGLDEDLGEGISEKDEFFDELLEKLHDY 694
>gnl|CDD|223413 COG0336, TrmD, tRNA-(guanine-N1)-methyltransferase [Translation,
ribosomal structure and biogenesis].
Length = 240
Score = 24.5 bits (54), Expect = 6.5
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 43 GPEMDMKIDMIVDTIDDMRQGKDIIQSYRTLLSQTGGP 80
G M MK + + D +D ++ K ++ LLS G P
Sbjct: 57 GAGMVMKPEPLFDALDSVKAAK---KAKVILLSPQGKP 91
>gnl|CDD|129496 TIGR00401, msrA, methionine-S-sulfoxide reductase. This model
describes peptide methionine sulfoxide reductase
(MsrA), a repair enzyme for proteins that have been
inactivated by oxidation. The enzyme from E. coli is
coextensive with this model and has enzymatic activity.
However, in all completed genomes in which this module
is present, a second protein module, described in
TIGR00357, is also found, and in several cases as part
of the same polypeptide chain: N-terminal to this
module in Helicobacter pylori and Haemophilus
influenzae (as in PilB of Neisseria gonorrhoeae) but
C-terminal to it in Treponema pallidum. PilB,
containing both domains, has been shown to be important
for the expression of adhesins in certain pathogens
[Protein fate, Protein modification and repair,
Cellular processes, Adaptations to atypical
conditions].
Length = 149
Score = 24.3 bits (53), Expect = 6.7
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 53 IVDTIDDMRQGKDIIQSYRT 72
I D RQG DI YR+
Sbjct: 75 IHDPTTGNRQGNDIGTQYRS 94
>gnl|CDD|225857 COG3320, COG3320, Putative dehydrogenase domain of multifunctional
non-ribosomal peptide synthetases and related enzymes
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 382
Score = 24.7 bits (54), Expect = 6.8
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 22 YHQSRAIGRYLARQAGLYGMDG 43
Y +S+ + L R+AG G+
Sbjct: 168 YGRSKWVAEKLVREAGDRGLPV 189
>gnl|CDD|179660 PRK03839, PRK03839, putative kinase; Provisional.
Length = 180
Score = 23.9 bits (52), Expect = 9.8
Identities = 7/38 (18%), Positives = 18/38 (47%)
Query: 30 RYLARQAGLYGMDGPEMDMKIDMIVDTIDDMRQGKDII 67
A + G+ EM++ D + I++ + K+++
Sbjct: 32 TEFALKKGIGEEKDDEMEIDFDKLAYFIEEEFKEKNVV 69
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.140 0.419
Gapped
Lambda K H
0.267 0.0713 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,168,158
Number of extensions: 333212
Number of successful extensions: 412
Number of sequences better than 10.0: 1
Number of HSP's gapped: 410
Number of HSP's successfully gapped: 51
Length of query: 81
Length of database: 10,937,602
Length adjustment: 50
Effective length of query: 31
Effective length of database: 8,719,902
Effective search space: 270316962
Effective search space used: 270316962
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.2 bits)