BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9888
(156 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q561X0|NEPR1_DANRE Nuclear envelope phosphatase-regulatory subunit 1 OS=Danio rerio
GN=cnep1r1 PE=2 SV=1
Length = 125
Score = 163 bits (412), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 75/114 (65%), Positives = 89/114 (78%)
Query: 39 NLKAFERRLTEVIACSGPSTKRWRLVLAFISMCTAVGAFYWLTDPDTSNCSFCQSLWNHP 98
+LKAFERRLTE ++C P+T RWR++L +S+CTA GA+ WL DPDT SF SLWNHP
Sbjct: 9 DLKAFERRLTEYVSCLQPATGRWRMILIVVSVCTATGAWNWLIDPDTQKVSFFSSLWNHP 68
Query: 99 FFAISSAILIILFLLGIHKRVIAPSIITSRARLVLTDFNMSCDDSGKLILKPRP 152
FF IS LI LF GIHKRV+APSII +R R VL ++NMSCDD+GKLILKPRP
Sbjct: 69 FFTISCVTLIGLFFAGIHKRVVAPSIIAARCRTVLAEYNMSCDDTGKLILKPRP 122
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 1 MCTAVGAFYWLTDPDTSNCSFCQSLWNHPFFAISSAILNLKAFERRLTEVIACSGPSTKR 60
+CTA GA+ WL DPDT SF SLWNHPFF IS L F V+A S + R
Sbjct: 40 VCTATGAWNWLIDPDTQKVSFFSSLWNHPFFTISCVTLIGLFFAGIHKRVVAPSIIAA-R 98
Query: 61 WRLVLAFISM-CTAVGAF 77
R VLA +M C G
Sbjct: 99 CRTVLAEYNMSCDDTGKL 116
>sp|Q5M8F7|NEPR1_XENTR Nuclear envelope phosphatase-regulatory subunit 1 OS=Xenopus
tropicalis GN=cnep1r1 PE=2 SV=1
Length = 125
Score = 161 bits (407), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 74/114 (64%), Positives = 89/114 (78%)
Query: 39 NLKAFERRLTEVIACSGPSTKRWRLVLAFISMCTAVGAFYWLTDPDTSNCSFCQSLWNHP 98
+LKAFERRLTE ++C P+T RWR++L +S+CTA GA+ WL DP+T SF SLWNHP
Sbjct: 9 DLKAFERRLTEYVSCLQPATGRWRMILIVVSVCTATGAWNWLIDPETQKVSFFTSLWNHP 68
Query: 99 FFAISSAILIILFLLGIHKRVIAPSIITSRARLVLTDFNMSCDDSGKLILKPRP 152
FF IS LI LF GIHKRV+APSII +R R VL ++NMSCDD+GKLILKPRP
Sbjct: 69 FFTISCITLIGLFFAGIHKRVVAPSIIAARCRTVLAEYNMSCDDTGKLILKPRP 122
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/34 (64%), Positives = 25/34 (73%)
Query: 1 MCTAVGAFYWLTDPDTSNCSFCQSLWNHPFFAIS 34
+CTA GA+ WL DP+T SF SLWNHPFF IS
Sbjct: 40 VCTATGAWNWLIDPETQKVSFFTSLWNHPFFTIS 73
>sp|Q7ZY85|NEPR1_XENLA Nuclear envelope phosphatase-regulatory subunit 1 OS=Xenopus laevis
GN=cnep1r1 PE=2 SV=1
Length = 125
Score = 160 bits (405), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 74/114 (64%), Positives = 89/114 (78%)
Query: 39 NLKAFERRLTEVIACSGPSTKRWRLVLAFISMCTAVGAFYWLTDPDTSNCSFCQSLWNHP 98
+LKAFERRLTE ++C P+T RWR++L +S+CTA GA+ WL DP+T SF SLWNHP
Sbjct: 9 DLKAFERRLTEYVSCLQPTTGRWRMLLIVVSVCTATGAWNWLIDPETQKVSFFTSLWNHP 68
Query: 99 FFAISSAILIILFLLGIHKRVIAPSIITSRARLVLTDFNMSCDDSGKLILKPRP 152
FF IS LI LF GIHKRV+APSII +R R VL ++NMSCDD+GKLILKPRP
Sbjct: 69 FFTISCITLIGLFFAGIHKRVVAPSIIAARCRTVLAEYNMSCDDTGKLILKPRP 122
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/34 (64%), Positives = 25/34 (73%)
Query: 1 MCTAVGAFYWLTDPDTSNCSFCQSLWNHPFFAIS 34
+CTA GA+ WL DP+T SF SLWNHPFF IS
Sbjct: 40 VCTATGAWNWLIDPETQKVSFFTSLWNHPFFTIS 73
>sp|Q5R7J7|NEPR1_PONAB Nuclear envelope phosphatase-regulatory subunit 1 OS=Pongo abelii
GN=CNEP1R1 PE=2 SV=1
Length = 125
Score = 160 bits (404), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 75/114 (65%), Positives = 88/114 (77%)
Query: 39 NLKAFERRLTEVIACSGPSTKRWRLVLAFISMCTAVGAFYWLTDPDTSNCSFCQSLWNHP 98
+LKAFERRLTE I C P+T RWR++L +S+CTA GA+ WL DP+T SF SLWNHP
Sbjct: 9 DLKAFERRLTEYIHCLQPATGRWRMLLIVVSVCTATGAWNWLIDPETQKVSFFTSLWNHP 68
Query: 99 FFAISSAILIILFLLGIHKRVIAPSIITSRARLVLTDFNMSCDDSGKLILKPRP 152
FF IS LI LF GIHKRV+APSII +R R VL ++NMSCDD+GKLILKPRP
Sbjct: 69 FFTISCITLIGLFFAGIHKRVVAPSIIAARCRTVLAEYNMSCDDTGKLILKPRP 122
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/34 (64%), Positives = 25/34 (73%)
Query: 1 MCTAVGAFYWLTDPDTSNCSFCQSLWNHPFFAIS 34
+CTA GA+ WL DP+T SF SLWNHPFF IS
Sbjct: 40 VCTATGAWNWLIDPETQKVSFFTSLWNHPFFTIS 73
>sp|Q3UJ81|NEPR1_MOUSE Nuclear envelope phosphatase-regulatory subunit 1 OS=Mus musculus
GN=Cnep1r1 PE=2 SV=1
Length = 125
Score = 160 bits (404), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 75/114 (65%), Positives = 88/114 (77%)
Query: 39 NLKAFERRLTEVIACSGPSTKRWRLVLAFISMCTAVGAFYWLTDPDTSNCSFCQSLWNHP 98
+LKAFERRLTE I C P+T RWR++L +S+CTA GA+ WL DP+T SF SLWNHP
Sbjct: 9 DLKAFERRLTEYIHCLQPATGRWRMLLIVVSVCTATGAWNWLIDPETQKVSFFTSLWNHP 68
Query: 99 FFAISSAILIILFLLGIHKRVIAPSIITSRARLVLTDFNMSCDDSGKLILKPRP 152
FF IS LI LF GIHKRV+APSII +R R VL ++NMSCDD+GKLILKPRP
Sbjct: 69 FFTISCITLIGLFFAGIHKRVVAPSIIAARCRTVLAEYNMSCDDTGKLILKPRP 122
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/34 (64%), Positives = 25/34 (73%)
Query: 1 MCTAVGAFYWLTDPDTSNCSFCQSLWNHPFFAIS 34
+CTA GA+ WL DP+T SF SLWNHPFF IS
Sbjct: 40 VCTATGAWNWLIDPETQKVSFFTSLWNHPFFTIS 73
>sp|Q8N9A8|NEPR1_HUMAN Nuclear envelope phosphatase-regulatory subunit 1 OS=Homo sapiens
GN=CNEP1R1 PE=1 SV=1
Length = 125
Score = 160 bits (404), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 75/114 (65%), Positives = 88/114 (77%)
Query: 39 NLKAFERRLTEVIACSGPSTKRWRLVLAFISMCTAVGAFYWLTDPDTSNCSFCQSLWNHP 98
+LKAFERRLTE I C P+T RWR++L +S+CTA GA+ WL DP+T SF SLWNHP
Sbjct: 9 DLKAFERRLTEYIHCLQPATGRWRMLLIVVSVCTATGAWNWLIDPETQKVSFFTSLWNHP 68
Query: 99 FFAISSAILIILFLLGIHKRVIAPSIITSRARLVLTDFNMSCDDSGKLILKPRP 152
FF IS LI LF GIHKRV+APSII +R R VL ++NMSCDD+GKLILKPRP
Sbjct: 69 FFTISCITLIGLFFAGIHKRVVAPSIIAARCRTVLAEYNMSCDDTGKLILKPRP 122
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/34 (64%), Positives = 25/34 (73%)
Query: 1 MCTAVGAFYWLTDPDTSNCSFCQSLWNHPFFAIS 34
+CTA GA+ WL DP+T SF SLWNHPFF IS
Sbjct: 40 VCTATGAWNWLIDPETQKVSFFTSLWNHPFFTIS 73
>sp|Q3ZBP2|NEPR1_BOVIN Nuclear envelope phosphatase-regulatory subunit 1 OS=Bos taurus
GN=CNEP1R1 PE=2 SV=1
Length = 125
Score = 160 bits (404), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 75/114 (65%), Positives = 88/114 (77%)
Query: 39 NLKAFERRLTEVIACSGPSTKRWRLVLAFISMCTAVGAFYWLTDPDTSNCSFCQSLWNHP 98
+LKAFERRLTE I C P+T RWR++L +S+CTA GA+ WL DP+T SF SLWNHP
Sbjct: 9 DLKAFERRLTEYIHCLQPATGRWRMLLIVVSVCTATGAWNWLIDPETQKVSFFTSLWNHP 68
Query: 99 FFAISSAILIILFLLGIHKRVIAPSIITSRARLVLTDFNMSCDDSGKLILKPRP 152
FF IS LI LF GIHKRV+APSII +R R VL ++NMSCDD+GKLILKPRP
Sbjct: 69 FFTISCITLIGLFFAGIHKRVVAPSIIAARCRTVLAEYNMSCDDTGKLILKPRP 122
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/34 (64%), Positives = 25/34 (73%)
Query: 1 MCTAVGAFYWLTDPDTSNCSFCQSLWNHPFFAIS 34
+CTA GA+ WL DP+T SF SLWNHPFF IS
Sbjct: 40 VCTATGAWNWLIDPETQKVSFFTSLWNHPFFTIS 73
>sp|Q8T0B1|NEPR1_DROME Nuclear envelope phosphatase-regulatory subunit 1 homolog
OS=Drosophila melanogaster GN=CG8009 PE=2 SV=1
Length = 131
Score = 152 bits (385), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 75/123 (60%), Positives = 92/123 (74%), Gaps = 4/123 (3%)
Query: 35 SAILNLKAFERRLTEVIACSGPSTKRWRLVLAFI----SMCTAVGAFYWLTDPDTSNCSF 90
SA +LKAFERRLTEV++ PST RWR +LA + SMCTA+ A+YWL DP T+
Sbjct: 4 SACEDLKAFERRLTEVVSSYRPSTFRWRKLLAVVLSAMSMCTAISAWYWLRDPRTTVVPL 63
Query: 91 CQSLWNHPFFAISSAILIILFLLGIHKRVIAPSIITSRARLVLTDFNMSCDDSGKLILKP 150
+SLW HP F +++ L++LF+LGI K VIAP IITSR R+VL DFNMSCDD+GKLILKP
Sbjct: 64 TESLWIHPVFTVATLTLVVLFILGIQKLVIAPQIITSRTRMVLGDFNMSCDDTGKLILKP 123
Query: 151 RPS 153
R S
Sbjct: 124 RQS 126
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 1 MCTAVGAFYWLTDPDTSNCSFCQSLWNHPFFAISSAILNLKAFERRLTEVIACSGPSTKR 60
MCTA+ A+YWL DP T+ +SLW HP F +++ L + F + +++ T R
Sbjct: 43 MCTAISAWYWLRDPRTTVVPLTESLWIHPVFTVATLTL-VVLFILGIQKLVIAPQIITSR 101
Query: 61 WRLVLAFISM-CTAVGAFYWLTDPDTSN 87
R+VL +M C G + P SN
Sbjct: 102 TRMVLGDFNMSCDDTGKL--ILKPRQSN 127
>sp|Q9XXN3|NEPR1_CAEEL Nuclear envelope phosphatase-regulatory subunit 1 homolog
OS=Caenorhabditis elegans GN=T19A6.3 PE=2 SV=2
Length = 140
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 73/121 (60%), Gaps = 4/121 (3%)
Query: 34 SSAILNLKAFERRLTEVIACSGPSTKRWRL-VLAFISMCTAVGAFYWLTDP-DTSNCSFC 91
S+A +LK FE+RLTEVI GP+ RWR+ ++ F + +G+ Y+ + +
Sbjct: 13 STACEDLKFFEKRLTEVITYMGPTCTRWRIAIVIFAVLVGVIGSKYFANEKIEIFQIPMI 72
Query: 92 QS-LWNHPFFAISSAILIILF-LLGIHKRVIAPSIITSRARLVLTDFNMSCDDSGKLILK 149
L H F + + ++LF + G+H+R++AP+I+ R R L+ F++SCD +GKLI+K
Sbjct: 73 DMFLTTHLDFTLCFFVGLLLFAVFGVHRRIVAPTIVARRCRDALSPFSLSCDHNGKLIVK 132
Query: 150 P 150
P
Sbjct: 133 P 133
>sp|Q3TTJ4|CH048_MOUSE Uncharacterized protein C8orf48 homolog OS=Mus musculus PE=2 SV=1
Length = 293
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 9/80 (11%)
Query: 57 STKRWRLVLAFISMCTAVGAFYWLTDPDTSNCSFCQSLWNHPFFAISSAILIILFLLGIH 116
S + RL L +I+ + V AF NC+ LWN + + A L + + H
Sbjct: 153 SNRPKRLQLRWIAETSEVDAF---------NCTIPDELWNRIYLENTRATLAYIGAITQH 203
Query: 117 KRVIAPSIITSRARLVLTDF 136
PS + RA L +DF
Sbjct: 204 ISSQCPSCNSKRAELAQSDF 223
>sp|Q24206|BRC4_DROME Broad-complex core protein isoform 6 OS=Drosophila melanogaster
GN=br PE=1 SV=2
Length = 880
Score = 30.4 bits (67), Expect = 4.7, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 21 FCQSLWNHPFFAISSAILNLKAFERRLTEVIACSGPSTKRWRLVLAFIS 69
FC WN+ +I+SA NL+ E + +AC G S K R+VL+ S
Sbjct: 7 FCLR-WNNYQSSITSAFENLRDDEAFVDVTLACEGRSIKAHRVVLSACS 54
>sp|Q01295|BRC1_DROME Broad-complex core protein isoforms 1/2/3/4/5 OS=Drosophila
melanogaster GN=br PE=1 SV=2
Length = 727
Score = 30.0 bits (66), Expect = 6.0, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 21 FCQSLWNHPFFAISSAILNLKAFERRLTEVIACSGPSTKRWRLVLAFIS 69
FC WN+ +I+SA NL+ E + +AC G S K R+VL+ S
Sbjct: 7 FCLR-WNNYQSSITSAFENLRDDEAFVDVTLACEGRSIKAHRVVLSACS 54
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.137 0.456
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,850,146
Number of Sequences: 539616
Number of extensions: 1861116
Number of successful extensions: 5492
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 5462
Number of HSP's gapped (non-prelim): 34
length of query: 156
length of database: 191,569,459
effective HSP length: 107
effective length of query: 49
effective length of database: 133,830,547
effective search space: 6557696803
effective search space used: 6557696803
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 56 (26.2 bits)