Query psy9888
Match_columns 156
No_of_seqs 81 out of 83
Neff 4.0
Searched_HMMs 46136
Date Fri Aug 16 22:10:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9888.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9888hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09771 Tmemb_18A: Transmembr 100.0 1.3E-70 2.9E-75 423.6 10.0 123 34-156 3-125 (125)
2 KOG4606|consensus 100.0 1.2E-69 2.7E-74 413.6 9.7 121 34-154 4-125 (126)
3 KOG4606|consensus 99.6 3.7E-16 8E-21 120.0 1.3 65 1-66 40-105 (126)
4 PF09771 Tmemb_18A: Transmembr 99.5 4.6E-15 1E-19 115.0 0.2 65 1-66 39-103 (125)
5 PF03907 Spo7: Spo7-like prote 97.4 0.0004 8.6E-09 58.3 5.8 110 34-152 4-116 (207)
6 PF05837 CENP-H: Centromere pr 54.9 5.8 0.00013 29.5 0.9 41 47-87 60-100 (106)
7 PF11694 DUF3290: Protein of u 51.0 15 0.00033 29.2 2.7 56 50-116 7-64 (149)
8 PF09591 DUF2463: Protein of u 45.0 32 0.00068 29.3 3.8 51 26-79 151-204 (210)
9 PF12911 OppC_N: N-terminal TM 44.4 25 0.00054 22.4 2.5 35 88-122 6-40 (56)
10 PF13150 DUF3989: Protein of u 41.5 35 0.00075 24.9 3.1 36 41-77 9-44 (85)
11 PF11189 DUF2973: Protein of u 41.2 23 0.00049 24.7 2.0 52 97-149 3-59 (65)
12 PRK10747 putative protoheme IX 37.9 46 0.001 29.1 3.9 30 61-91 2-31 (398)
13 PF11197 DUF2835: Protein of u 37.6 16 0.00035 25.8 0.9 15 134-148 51-65 (68)
14 PF10636 hemP: Hemin uptake pr 36.1 19 0.00042 22.9 1.0 15 135-149 23-37 (38)
15 TIGR00540 hemY_coli hemY prote 35.8 52 0.0011 28.8 3.9 30 61-91 2-31 (409)
16 PF15048 OSTbeta: Organic solu 35.3 34 0.00073 27.1 2.4 35 93-134 33-68 (125)
17 PF15562 Imm10: Immunity prote 33.3 46 0.001 22.6 2.5 24 63-86 4-27 (61)
18 PF08167 RIX1: rRNA processing 30.5 1.3E+02 0.0028 23.5 5.0 100 20-124 3-114 (165)
19 COG4062 MtrB Tetrahydromethano 29.8 53 0.0011 25.4 2.6 52 9-62 11-62 (108)
20 COG3554 Uncharacterized protei 29.0 15 0.00032 30.8 -0.5 31 116-146 33-64 (190)
21 PF11293 DUF3094: Protein of u 28.4 66 0.0014 22.2 2.6 43 38-80 7-50 (55)
22 PF11859 DUF3379: Protein of u 27.8 1.2E+02 0.0026 26.1 4.7 40 11-52 11-50 (232)
23 COG1015 DeoB Phosphopentomutas 26.8 51 0.0011 30.6 2.4 36 22-58 291-326 (397)
24 PHA02689 ORF051 putative membr 26.8 1.2E+02 0.0025 24.2 4.1 31 115-150 57-87 (128)
25 PF15121 TMEM71: TMEM71 protei 26.4 32 0.0007 27.8 0.9 23 132-154 71-93 (149)
26 PHA03171 UL37 tegument protein 26.3 41 0.00089 31.7 1.7 39 100-149 453-492 (499)
27 PF14903 WG_beta_rep: WG conta 26.3 52 0.0011 18.5 1.6 14 140-153 4-17 (35)
28 PRK01294 lipase chaperone; Pro 26.0 49 0.0011 29.4 2.1 29 58-87 3-31 (336)
29 PF01692 Paramyxo_C: Paramyxov 26.0 26 0.00056 29.5 0.4 43 13-55 140-182 (204)
30 PTZ00078 Superoxide dismutase 25.5 16 0.00035 29.8 -0.9 67 25-91 66-132 (193)
31 TIGR01439 lp_hng_hel_AbrB loop 24.8 58 0.0013 19.3 1.7 27 125-151 11-42 (43)
32 COG3101 Uncharacterized protei 24.7 29 0.00063 28.7 0.4 11 135-145 113-124 (180)
33 PLN02622 iron superoxide dismu 24.7 17 0.00037 31.5 -1.0 68 24-91 121-189 (261)
34 PRK10299 PhoPQ regulatory prot 23.3 67 0.0015 21.5 1.9 17 57-73 2-18 (47)
35 PF02706 Wzz: Chain length det 22.4 26 0.00055 25.5 -0.3 29 59-87 14-42 (152)
36 PF14857 TMEM151: TMEM151 fami 21.5 1.6E+02 0.0035 27.7 4.5 53 59-111 16-79 (425)
37 PF03032 Brevenin: Brevenin/es 21.4 57 0.0012 21.5 1.2 10 106-115 6-15 (46)
38 PHA03255 BDLF3; Provisional 21.3 85 0.0018 26.7 2.5 34 83-116 171-206 (234)
39 PRK10183 hypothetical protein; 20.7 53 0.0011 22.7 1.0 14 135-148 41-54 (56)
40 PHA02692 hypothetical protein; 20.5 1.6E+02 0.0036 21.1 3.5 23 33-55 13-35 (70)
41 TIGR00927 2A1904 K+-dependent 20.3 73 0.0016 33.1 2.3 37 43-85 10-46 (1096)
No 1
>PF09771 Tmemb_18A: Transmembrane protein 188; InterPro: IPR019168 The function of this family of transmembrane proteins has not, as yet, been determined.
Probab=100.00 E-value=1.3e-70 Score=423.57 Aligned_cols=123 Identities=70% Similarity=1.155 Sum_probs=120.0
Q ss_pred hhhhHhHHHHHHHHHhhhcccCCCcchhHHHHHHHHHHHhhhceeeccCCCCccchhhhhhhhchhHHHHHHHHHHHHHh
Q psy9888 34 SSAILNLKAFERRLTEVIACSGPSTKRWRLVLAFISMCTAVGAFYWLTDPDTSNCSFCQSLWNHPFFAISSAILIILFLL 113 (156)
Q Consensus 34 SsacEdlkaFErRl~evi~~~~P~t~RWRiiL~~~s~ct~~~a~~wl~Dp~t~~~~~~~sL~~H~~Ft~s~~~li~Lf~~ 113 (156)
+++|||||||||||||||+++||+|.|||++|+++++|+++|||+||+||+|++++++|||||||+|++|+++|++||++
T Consensus 3 ~t~ceDLkaFErRLtEvI~~l~Pst~RWRiiL~v~svct~v~A~~wL~Dp~ts~~~~~~sL~~H~~FtiS~~~lilLF~~ 82 (125)
T PF09771_consen 3 PTACEDLKAFERRLTEVINSLQPSTTRWRIILVVVSVCTAVGAWHWLMDPETSQVSFLDSLWNHPFFTISCIILILLFLF 82 (125)
T ss_pred chhHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHhcCcccccchHHHHHHhCHhHHHHHHHHHHHHHh
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccccchhhHHHHHhhcccccccccCCccEEEecCCCCCC
Q psy9888 114 GIHKRVIAPSIITSRARLVLTDFNMSCDDSGKLILKPRPSTLS 156 (156)
Q Consensus 114 Gihkrvvapsii~~r~R~vL~~fnmscd~~GkLIlkpr~~~~~ 156 (156)
|+||||+|||||++|||+||+||||||||||||||||||+|-+
T Consensus 83 GihkrVvapsII~~R~R~vL~~fnmscd~~GkLIlkp~~~~~~ 125 (125)
T PF09771_consen 83 GIHKRVVAPSIIASRCRSVLADFNMSCDDSGKLILKPRPTNNS 125 (125)
T ss_pred hhhhHhhCchHHHHHHHHHHhhhccCcCCCCcEEecCCCCCCC
Confidence 9999999999999999999999999999999999999999743
No 2
>KOG4606|consensus
Probab=100.00 E-value=1.2e-69 Score=413.61 Aligned_cols=121 Identities=66% Similarity=1.128 Sum_probs=119.4
Q ss_pred hhhhHhHHHHHHHHHhhhcccCCCcchhHHHHHHHHHHH-hhhceeeccCCCCccchhhhhhhhchhHHHHHHHHHHHHH
Q psy9888 34 SSAILNLKAFERRLTEVIACSGPSTKRWRLVLAFISMCT-AVGAFYWLTDPDTSNCSFCQSLWNHPFFAISSAILIILFL 112 (156)
Q Consensus 34 SsacEdlkaFErRl~evi~~~~P~t~RWRiiL~~~s~ct-~~~a~~wl~Dp~t~~~~~~~sL~~H~~Ft~s~~~li~Lf~ 112 (156)
+++|||||||||||||||+++||+|+|||++|+++|+|+ ++|||+|+.||||+|+|+++||||||+||+|+++|++||+
T Consensus 4 ~~aceDLKaFErRLTEvi~~~~Pst~RWRi~lvi~svc~gaigawywl~dpet~~vp~~~sLw~Hp~FTi~~~tLi~lf~ 83 (126)
T KOG4606|consen 4 LEACEDLKAFERRLTEVITYMGPSTGRWRIALVIFSVCTGAIGAWYWLIDPETQKVPFFTSLWNHPFFTISFITLIGLFF 83 (126)
T ss_pred hhHHHHHHHHHHHHHHHhhhcCCCccchhhHHHHHHHHHHhhhhhhhhcCcceeeeehHHHHhcCccHHHHHHHHHHHHH
Confidence 579999999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred hhcccccccchhhHHHHHhhcccccccccCCccEEEecCCCC
Q psy9888 113 LGIHKRVIAPSIITSRARLVLTDFNMSCDDSGKLILKPRPST 154 (156)
Q Consensus 113 ~Gihkrvvapsii~~r~R~vL~~fnmscd~~GkLIlkpr~~~ 154 (156)
+|||||||||+||++|||.+|+||||||||+|||||||||++
T Consensus 84 ~GihkrvvAPsIia~rcr~vL~~fnmSCDdtGKLIlKPR~s~ 125 (126)
T KOG4606|consen 84 AGIHKRVVAPSIIAARCRTVLAEFNMSCDDTGKLILKPRPSV 125 (126)
T ss_pred hhhhhhhhchHHHHHHHHHHhhcccCCcCCCCceEecCCCCC
Confidence 999999999999999999999999999999999999999985
No 3
>KOG4606|consensus
Probab=99.58 E-value=3.7e-16 Score=120.04 Aligned_cols=65 Identities=49% Similarity=0.775 Sum_probs=57.6
Q ss_pred Cee-eeeceeeecCCCCCcchhhHHhhhCcchhhhhhhHhHHHHHHHHHhhhcccCCCcchhHHHHH
Q psy9888 1 MCT-AVGAFYWLTDPDTSNCSFCQSLWNHPFFAISSAILNLKAFERRLTEVIACSGPSTKRWRLVLA 66 (156)
Q Consensus 1 vct-avgA~~WL~DP~t~~v~~~~SL~nH~~FtiSsacEdlkaFErRl~evi~~~~P~t~RWRiiL~ 66 (156)
+|+ ++|||+|+.||||.|+||++||||||+||+|..++.+.+|.+.+++|+++.== +.|-|.+|.
T Consensus 40 vc~gaigawywl~dpet~~vp~~~sLw~Hp~FTi~~~tLi~lf~~GihkrvvAPsIi-a~rcr~vL~ 105 (126)
T KOG4606|consen 40 VCTGAIGAWYWLIDPETQKVPFFTSLWNHPFFTISFITLIGLFFAGIHKRVVAPSII-AARCRTVLA 105 (126)
T ss_pred HHHHhhhhhhhhcCcceeeeehHHHHhcCccHHHHHHHHHHHHHhhhhhhhhchHHH-HHHHHHHhh
Confidence 477 99999999999999999999999999999999999999999999999997532 456666654
No 4
>PF09771 Tmemb_18A: Transmembrane protein 188; InterPro: IPR019168 The function of this family of transmembrane proteins has not, as yet, been determined.
Probab=99.48 E-value=4.6e-15 Score=115.05 Aligned_cols=65 Identities=54% Similarity=0.794 Sum_probs=57.4
Q ss_pred CeeeeeceeeecCCCCCcchhhHHhhhCcchhhhhhhHhHHHHHHHHHhhhcccCCCcchhHHHHH
Q psy9888 1 MCTAVGAFYWLTDPDTSNCSFCQSLWNHPFFAISSAILNLKAFERRLTEVIACSGPSTKRWRLVLA 66 (156)
Q Consensus 1 vctavgA~~WL~DP~t~~v~~~~SL~nH~~FtiSsacEdlkaFErRl~evi~~~~P~t~RWRiiL~ 66 (156)
+|+++|||+||+||+|+|++++|||||||+|++|+...-+.++-+-++.|++.. .-+.|=|.+|.
T Consensus 39 vct~v~A~~wL~Dp~ts~~~~~~sL~~H~~FtiS~~~lilLF~~GihkrVvaps-II~~R~R~vL~ 103 (125)
T PF09771_consen 39 VCTAVGAWHWLMDPETSQVSFLDSLWNHPFFTISCIILILLFLFGIHKRVVAPS-IIASRCRSVLA 103 (125)
T ss_pred HHHHHHHHHHhcCcccccchHHHHHHhCHhHHHHHHHHHHHHHhhhhhHhhCch-HHHHHHHHHHh
Confidence 589999999999999999999999999999999999999999999999998864 23556666554
No 5
>PF03907 Spo7: Spo7-like protein; InterPro: IPR005605 Saccharomyces cerevisiae (Baker's yeast) Spo7 P18410 from SWISSPROT is an integral nuclear/ER membrane protein of unknown function, required for normal nuclear envelope morphology and sporulation [].
Probab=97.37 E-value=0.0004 Score=58.33 Aligned_cols=110 Identities=17% Similarity=0.282 Sum_probs=80.7
Q ss_pred hhhhHhHHHHHHHHHhhhcccCCCcchhH--HHHHHHHHHHhhhceeeccCCCCccchhhhhhhhchhHHHHHHHHHHHH
Q psy9888 34 SSAILNLKAFERRLTEVIACSGPSTKRWR--LVLAFISMCTAVGAFYWLTDPDTSNCSFCQSLWNHPFFAISSAILIILF 111 (156)
Q Consensus 34 SsacEdlkaFErRl~evi~~~~P~t~RWR--iiL~~~s~ct~~~a~~wl~Dp~t~~~~~~~sL~~H~~Ft~s~~~li~Lf 111 (156)
+..=.||+=||++|.+-...+| .-||+ .+|....+.++..+|.=+.+|+.....+++. ...-.+..+++|+++.+
T Consensus 4 ~~iyrNLLIlEesLR~q~~~lr--~rrrkyt~FL~~L~~~i~~~~y~lf~~~~~~~~g~~~~-~~~~~ll~~vvTlvLf~ 80 (207)
T PF03907_consen 4 SKIYRNLLILEESLRQQYLQLR--ARRRKYTFFLSLLCLWIAFFFYALFFRPREDGTGLVRY-FLKFCLLFGVVTLVLFW 80 (207)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhcCChhhhhHHHHH-HHHHHHHHHHHHHHHhh
Confidence 4456899999999999887776 56777 4555555555666676677777665444433 33344556677777777
Q ss_pred Hhhcccc-cccchhhHHHHHhhcccccccccCCccEEEecCC
Q psy9888 112 LLGIHKR-VIAPSIITSRARLVLTDFNMSCDDSGKLILKPRP 152 (156)
Q Consensus 112 ~~Gihkr-vvapsii~~r~R~vL~~fnmscd~~GkLIlkpr~ 152 (156)
+.|+++| ++-|.=...-++.-|..||| ||+..+.|
T Consensus 81 ~SG~y~r~Iv~prrf~~~tNrgLR~fN~------kLV~i~~p 116 (207)
T PF03907_consen 81 ASGMYERTIVYPRRFVPSTNRGLRQFNV------KLVKIKSP 116 (207)
T ss_pred ccceeecceeeehhhHhhcchhhhhcee------EEEEecCc
Confidence 9999998 88999999999999999999 77666544
No 6
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=54.94 E-value=5.8 Score=29.50 Aligned_cols=41 Identities=20% Similarity=0.357 Sum_probs=32.3
Q ss_pred HHhhhcccCCCcchhHHHHHHHHHHHhhhceeeccCCCCcc
Q psy9888 47 LTEVIACSGPSTKRWRLVLAFISMCTAVGAFYWLTDPDTSN 87 (156)
Q Consensus 47 l~evi~~~~P~t~RWRiiL~~~s~ct~~~a~~wl~Dp~t~~ 87 (156)
+.++-+.++-+-.||+++=.+++.+.+.|+-+|-.||+...
T Consensus 60 l~~~~~~lk~~r~~~~v~k~v~q~lI~gSgVdWa~D~~L~~ 100 (106)
T PF05837_consen 60 LEKLEKELKKSRQRWRVMKNVFQALIVGSGVDWAEDPKLRE 100 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCHHHHH
Confidence 33344444556679999999999999999999999997643
No 7
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=51.01 E-value=15 Score=29.20 Aligned_cols=56 Identities=20% Similarity=0.332 Sum_probs=34.3
Q ss_pred hhcccCCCcchhHHHHHHH-HHHHhhhceeeccCCCCccchhhhhhhhchhHHHHHH-HHHHHHHhhcc
Q psy9888 50 VIACSGPSTKRWRLVLAFI-SMCTAVGAFYWLTDPDTSNCSFCQSLWNHPFFAISSA-ILIILFLLGIH 116 (156)
Q Consensus 50 vi~~~~P~t~RWRiiL~~~-s~ct~~~a~~wl~Dp~t~~~~~~~sL~~H~~Ft~s~~-~li~Lf~~Gih 116 (156)
++.+.+-...-||.+++++ .++.++.+++|+.|-...+ +..| +.+ .|+++|+.|++
T Consensus 7 Yl~~q~~~~~~~~~~~i~~ll~~l~~~~~~Y~r~r~~tK---yRDL--------~II~~L~ll~l~giq 64 (149)
T PF11694_consen 7 YLQSQQSQNDYLRYILIIILLLVLIFFFIKYLRNRLDTK---YRDL--------SIIALLLLLLLIGIQ 64 (149)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch---hhhH--------HHHHHHHHHHHHHHH
Confidence 4444555566677665554 7788999999999953333 2222 222 44555578876
No 8
>PF09591 DUF2463: Protein of unknown function (DUF2463); InterPro: IPR019081 This protein is found in eukaryotic, parasitic microsporidia. Its function is unknown.
Probab=45.00 E-value=32 Score=29.33 Aligned_cols=51 Identities=31% Similarity=0.381 Sum_probs=38.2
Q ss_pred hhCcchhhhhhhHhHHHHHHHHHhhhccc---CCCcchhHHHHHHHHHHHhhhceee
Q psy9888 26 WNHPFFAISSAILNLKAFERRLTEVIACS---GPSTKRWRLVLAFISMCTAVGAFYW 79 (156)
Q Consensus 26 ~nH~~FtiSsacEdlkaFErRl~evi~~~---~P~t~RWRiiL~~~s~ct~~~a~~w 79 (156)
..++.|.+.+....|. |-|+|--.+. .+.+.+||+++.+.-+..++..|..
T Consensus 151 ~~~~y~~i~s~iliLi---r~lkek~~Ps~kss~pta~wRv~ifvlILil~~~iY~~ 204 (210)
T PF09591_consen 151 EYYPYFAIISSILILI---RLLKEKYFPSKKSSLPTAPWRVAIFVLILILAIFIYGF 204 (210)
T ss_pred ceeeHHHHHHHHHHHH---HHhhhccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 4678899999888776 5556655553 2578999999988888887776643
No 9
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=44.44 E-value=25 Score=22.38 Aligned_cols=35 Identities=29% Similarity=0.393 Sum_probs=26.5
Q ss_pred chhhhhhhhchhHHHHHHHHHHHHHhhcccccccc
Q psy9888 88 CSFCQSLWNHPFFAISSAILIILFLLGIHKRVIAP 122 (156)
Q Consensus 88 ~~~~~sL~~H~~Ft~s~~~li~Lf~~Gihkrvvap 122 (156)
.-+.+.+..|+...++.+++++++++.+---.++|
T Consensus 6 ~~~~~~f~~nk~a~~gl~il~~~vl~ai~~p~~~p 40 (56)
T PF12911_consen 6 KDAWRRFRRNKLAVIGLIILLILVLLAIFAPFISP 40 (56)
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34567788999999999999999888754444444
No 10
>PF13150 DUF3989: Protein of unknown function (DUF3989)
Probab=41.54 E-value=35 Score=24.91 Aligned_cols=36 Identities=22% Similarity=0.396 Sum_probs=28.1
Q ss_pred HHHHHHHHhhhcccCCCcchhHHHHHHHHHHHhhhce
Q psy9888 41 KAFERRLTEVIACSGPSTKRWRLVLAFISMCTAVGAF 77 (156)
Q Consensus 41 kaFErRl~evi~~~~P~t~RWRiiL~~~s~ct~~~a~ 77 (156)
+-.|.||.++-+.+-| ..|=+++|+.++++++.+-|
T Consensus 9 ~~~~~~Lr~~c~~Lsp-~~R~~vvl~ml~~fa~l~ly 44 (85)
T PF13150_consen 9 DRADDRLRRYCGRLSP-KQRLRVVLVMLVLFAALCLY 44 (85)
T ss_pred HHHHHHHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999988 66778888888777766554
No 11
>PF11189 DUF2973: Protein of unknown function (DUF2973); InterPro: IPR021355 This entry is represented by Bacteriophage Syn9, Gp224. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently they have no known function.
Probab=41.18 E-value=23 Score=24.73 Aligned_cols=52 Identities=23% Similarity=0.314 Sum_probs=27.1
Q ss_pred chhHHHHHHHHHHHHHhhcccccccchhhHHHHHh-----hcccccccccCCccEEEe
Q psy9888 97 HPFFAISSAILIILFLLGIHKRVIAPSIITSRARL-----VLTDFNMSCDDSGKLILK 149 (156)
Q Consensus 97 H~~Ft~s~~~li~Lf~~Gihkrvvapsii~~r~R~-----vL~~fnmscd~~GkLIlk 149 (156)
|.++..+..+|+.+-+-|+-|-.++-++-.+|.+. .---=.| -|++|++|--
T Consensus 3 ~llY~~af~~L~~~a~~~m~~g~~~~~~~~~~~~~~~~~~~t~HPEL-LD~~G~~i~E 59 (65)
T PF11189_consen 3 PLLYILAFTILLFLAFRNMIRGWIANSIESQRRYNDRTGKVTIHPEL-LDENGNIINE 59 (65)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhccccccccchhccCCCCCCccc-CCCCcCCcCC
Confidence 45566666555555455666666666666333322 1111122 4777776643
No 12
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=37.92 E-value=46 Score=29.10 Aligned_cols=30 Identities=7% Similarity=0.104 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHhhhceeeccCCCCccchhh
Q psy9888 61 WRLVLAFISMCTAVGAFYWLTDPDTSNCSFC 91 (156)
Q Consensus 61 WRiiL~~~s~ct~~~a~~wl~Dp~t~~~~~~ 91 (156)
+|+++.++.++.+++.-.|+.| +++.|.+.
T Consensus 2 ~r~l~~~~~l~~~~~~~~~~~~-~~Gyv~i~ 31 (398)
T PRK10747 2 LKVLLLFVLLIAGIVVGPMIAG-HQGYVLIQ 31 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC-CCCeEEEE
Confidence 4777777777777777778866 44444443
No 13
>PF11197 DUF2835: Protein of unknown function (DUF2835); InterPro: IPR021363 This is a bacterial family of uncharacterised proteins. One member of this family (A4VM42 from SWISSPROT) is annotated as the A subunit of Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV).
Probab=37.64 E-value=16 Score=25.77 Aligned_cols=15 Identities=27% Similarity=0.556 Sum_probs=12.9
Q ss_pred ccccccccCCccEEE
Q psy9888 134 TDFNMSCDDSGKLIL 148 (156)
Q Consensus 134 ~~fnmscd~~GkLIl 148 (156)
.-|.|..||+||++-
T Consensus 51 G~F~l~~d~~~kf~s 65 (68)
T PF11197_consen 51 GRFRLEFDDNNKFVS 65 (68)
T ss_pred EEEEEEECCCCCEEE
Confidence 469999999999973
No 14
>PF10636 hemP: Hemin uptake protein hemP; InterPro: IPR019600 This entry represents bacterial proteins that are involved in the uptake of the iron source hemin []. ; PDB: 2JRA_B 2LOJ_A.
Probab=36.14 E-value=19 Score=22.93 Aligned_cols=15 Identities=33% Similarity=0.554 Sum_probs=12.5
Q ss_pred cccccccCCccEEEe
Q psy9888 135 DFNMSCDDSGKLILK 149 (156)
Q Consensus 135 ~fnmscd~~GkLIlk 149 (156)
.|.+--..+|||||-
T Consensus 23 ~Y~LR~Tr~gKLILT 37 (38)
T PF10636_consen 23 IYRLRITRQGKLILT 37 (38)
T ss_dssp EEEEEEETTTEEEEE
T ss_pred EEEeeEccCCcEEEc
Confidence 578888889999983
No 15
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=35.75 E-value=52 Score=28.79 Aligned_cols=30 Identities=7% Similarity=0.145 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHhhhceeeccCCCCccchhh
Q psy9888 61 WRLVLAFISMCTAVGAFYWLTDPDTSNCSFC 91 (156)
Q Consensus 61 WRiiL~~~s~ct~~~a~~wl~Dp~t~~~~~~ 91 (156)
+|++++++.++.++++--|+.+ +++.|.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~-~~Gyv~i~ 31 (409)
T TIGR00540 2 FKVLFLFLLLIAGIVAGPMIAG-HQGYVLIE 31 (409)
T ss_pred hHHHHHHHHHHHHHHHHHHHcC-CCCeEEEE
Confidence 4666666666666665557776 45444443
No 16
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=35.25 E-value=34 Score=27.09 Aligned_cols=35 Identities=40% Similarity=0.641 Sum_probs=25.2
Q ss_pred hhhhchhHHHHHHHHHHHH-HhhcccccccchhhHHHHHhhcc
Q psy9888 93 SLWNHPFFAISSAILIILF-LLGIHKRVIAPSIITSRARLVLT 134 (156)
Q Consensus 93 sL~~H~~Ft~s~~~li~Lf-~~Gihkrvvapsii~~r~R~vL~ 134 (156)
+.||.-.+++|++.+++=| ++|. +|-+.|-|.+.+
T Consensus 33 tpWNysiL~Ls~vvlvi~~~LLgr-------si~ANRnrK~~~ 68 (125)
T PF15048_consen 33 TPWNYSILALSFVVLVISFFLLGR-------SIQANRNRKMQP 68 (125)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHH-------HhHhcccccccc
Confidence 4599999999998777655 5553 566677776663
No 17
>PF15562 Imm10: Immunity protein 10
Probab=33.29 E-value=46 Score=22.58 Aligned_cols=24 Identities=21% Similarity=0.542 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhhhceeeccCCCCc
Q psy9888 63 LVLAFISMCTAVGAFYWLTDPDTS 86 (156)
Q Consensus 63 iiL~~~s~ct~~~a~~wl~Dp~t~ 86 (156)
++++++++..++--|+|+.||+.+
T Consensus 4 i~~g~l~l~gaI~~W~W~~~~~g~ 27 (61)
T PF15562_consen 4 ILIGLLFLLGAIFNWKWFYDPRGS 27 (61)
T ss_pred HHHHHHHHHHHHhCCceeEcCCCC
Confidence 467788889999999999999765
No 18
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=30.52 E-value=1.3e+02 Score=23.53 Aligned_cols=100 Identities=14% Similarity=0.213 Sum_probs=61.0
Q ss_pred hhhHHhhhCcchhhhhhhHhHHHHHHHHHhhhcccCCCcchhHHHHHHHHHHHh-------hhceeeccCCCCccchhhh
Q psy9888 20 SFCQSLWNHPFFAISSAILNLKAFERRLTEVIACSGPSTKRWRLVLAFISMCTA-------VGAFYWLTDPDTSNCSFCQ 92 (156)
Q Consensus 20 ~~~~SL~nH~~FtiSsacEdlkaFErRl~evi~~~~P~t~RWRiiL~~~s~ct~-------~~a~~wl~Dp~t~~~~~~~ 92 (156)
++++.|.+|..+.=+....++..+-.|+....++-.| ..||.-+-.+-++|.- =.+..|+.- -....+
T Consensus 3 ~ll~~l~~~~~~~~~~~~~~l~~l~~ri~~LL~s~~~-~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~----Ll~~L~ 77 (165)
T PF08167_consen 3 SLLSTLRSCGLLLSAPSKSALHKLVTRINSLLQSKSA-YSRWAGLCLLKVTVEQCSWEILLSHGSQWLRA----LLSILE 77 (165)
T ss_pred HHHHHHHccchhhcccCHHHHHHHHHHHHHHhCCCCh-hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH----HHHHHc
Confidence 5678888898887776778899999999999988775 7899654444444433 223334321 222222
Q ss_pred hhhhchhHHHHHHHHHHHHH--hh---cccccccchh
Q psy9888 93 SLWNHPFFAISSAILIILFL--LG---IHKRVIAPSI 124 (156)
Q Consensus 93 sL~~H~~Ft~s~~~li~Lf~--~G---ihkrvvapsi 124 (156)
+-........++.++--+|. -| .+|++..|.+
T Consensus 78 ~~~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei~tp~l 114 (165)
T PF08167_consen 78 KPDPPSVLEAAIITLTRLFDLIRGKPTLTREIATPNL 114 (165)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCchHHHHhhccH
Confidence 32333455566666666662 22 3556666553
No 19
>COG4062 MtrB Tetrahydromethanopterin S-methyltransferase, subunit B [Coenzyme metabolism]
Probab=29.77 E-value=53 Score=25.39 Aligned_cols=52 Identities=17% Similarity=0.250 Sum_probs=37.7
Q ss_pred eeecCCCCCcchhhHHhhhCcchhhhhhhHhHHHHHHHHHhhhcccCCCcchhH
Q psy9888 9 YWLTDPDTSNCSFCQSLWNHPFFAISSAILNLKAFERRLTEVIACSGPSTKRWR 62 (156)
Q Consensus 9 ~WL~DP~t~~v~~~~SL~nH~~FtiSsacEdlkaFErRl~evi~~~~P~t~RWR 62 (156)
+=.+||+|..+ -+--.---+..+...-|-.+.+|.--..+++++.|+++-|.
T Consensus 11 ~lvmd~~Tgvv--ae~~edvi~ldv~pi~Eqi~kLe~~vddl~~sldPstp~ln 62 (108)
T COG4062 11 PLVMDPETGVV--AEGFEDVIFLDVDPIEEQIKKLETLVDDLENSLDPSTPPLN 62 (108)
T ss_pred ceeEccchhhH--hhccCceEEEeccHHHHHHHHHHHHHHHHHhccCCCCCCcc
Confidence 34567777554 12113344556777788899999999999999999999883
No 20
>COG3554 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.98 E-value=15 Score=30.84 Aligned_cols=31 Identities=26% Similarity=0.374 Sum_probs=23.3
Q ss_pred ccccccchhh-HHHHHhhcccccccccCCccE
Q psy9888 116 HKRVIAPSII-TSRARLVLTDFNMSCDDSGKL 146 (156)
Q Consensus 116 hkrvvapsii-~~r~R~vL~~fnmscd~~GkL 146 (156)
-|++.|++|| .+-..-.-+.|.|.||+.++.
T Consensus 33 g~~iRa~s~v~~~~~~p~~~~Yrl~cDa~wr~ 64 (190)
T COG3554 33 GKRIRANSIVAERGATPFGARYRLQCDAGWRT 64 (190)
T ss_pred cceeecceeEEeccCCceeEEEEEEecCCccE
Confidence 4688899966 444445567899999998874
No 21
>PF11293 DUF3094: Protein of unknown function (DUF3094); InterPro: IPR021444 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=28.38 E-value=66 Score=22.20 Aligned_cols=43 Identities=16% Similarity=0.332 Sum_probs=24.4
Q ss_pred HhHHHHHHHHHhhhcccC-CCcchhHHHHHHHHHHHhhhceeec
Q psy9888 38 LNLKAFERRLTEVIACSG-PSTKRWRLVLAFISMCTAVGAFYWL 80 (156)
Q Consensus 38 EdlkaFErRl~evi~~~~-P~t~RWRiiL~~~s~ct~~~a~~wl 80 (156)
||-..-|+=|+.-.++-. -.-.-||++++++++.++.|..-|+
T Consensus 7 EDQ~~Vd~yL~a~~~~VER~PFrP~~Ll~~li~Vv~gl~llS~l 50 (55)
T PF11293_consen 7 EDQQRVDEYLQAGVNQVERKPFRPWRLLIVLIVVVIGLGLLSRL 50 (55)
T ss_pred HHHHHHHHHHhCCCCccccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 454444444443333331 1133399998888888887765544
No 22
>PF11859 DUF3379: Protein of unknown function (DUF3379); InterPro: IPR021806 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 234 to 251 amino acids in length.
Probab=27.79 E-value=1.2e+02 Score=26.11 Aligned_cols=40 Identities=18% Similarity=0.334 Sum_probs=29.9
Q ss_pred ecCCCCCcchhhHHhhhCcchhhhhhhHhHHHHHHHHHhhhc
Q psy9888 11 LTDPDTSNCSFCQSLWNHPFFAISSAILNLKAFERRLTEVIA 52 (156)
Q Consensus 11 L~DP~t~~v~~~~SL~nH~~FtiSsacEdlkaFErRl~evi~ 52 (156)
+.||+..---+++.+..+|-- ..-..|+|.|.++|..-++
T Consensus 11 ~aDP~~~d~e~l~a~~~~~~~--~~F~~d~~~lD~~l~~Al~ 50 (232)
T PF11859_consen 11 YADPNDQDPEFLEAAKASPAN--QKFVDDLKQLDAQLEQALK 50 (232)
T ss_pred HcCCccCCHHHHHHHHhCHHH--HHHHHHHHHHHHHHHHHcC
Confidence 468888777788887666642 3447899999999987664
No 23
>COG1015 DeoB Phosphopentomutase [Carbohydrate transport and metabolism]
Probab=26.81 E-value=51 Score=30.57 Aligned_cols=36 Identities=28% Similarity=0.340 Sum_probs=27.0
Q ss_pred hHHhhhCcchhhhhhhHhHHHHHHHHHhhhcccCCCc
Q psy9888 22 CQSLWNHPFFAISSAILNLKAFERRLTEVIACSGPST 58 (156)
Q Consensus 22 ~~SL~nH~~FtiSsacEdlkaFErRl~evi~~~~P~t 58 (156)
+|||+-|-.=...- .+-|..|.|||.|+|..|++--
T Consensus 291 fD~~yGHRrDv~gY-a~aLe~FD~rL~e~~~~l~edD 326 (397)
T COG1015 291 FDSLYGHRRDVAGY-AAALEEFDRRLPELIENLREDD 326 (397)
T ss_pred cccccccccchHHH-HHHHHHHHHHHHHHHHhcCCCC
Confidence 46666666555544 4458999999999999998854
No 24
>PHA02689 ORF051 putative membrane protein; Provisional
Probab=26.81 E-value=1.2e+02 Score=24.23 Aligned_cols=31 Identities=23% Similarity=0.396 Sum_probs=21.7
Q ss_pred cccccccchhhHHHHHhhcccccccccCCccEEEec
Q psy9888 115 IHKRVIAPSIITSRARLVLTDFNMSCDDSGKLILKP 150 (156)
Q Consensus 115 ihkrvvapsii~~r~R~vL~~fnmscd~~GkLIlkp 150 (156)
+.|+=.+|+.|- -+.+=++.||+++=.|-.|
T Consensus 57 f~~~~~~~~pid-----~~~~t~L~C~g~~lmI~lP 87 (128)
T PHA02689 57 FRRAPRAPSPLD-----AYLQASLVCDGDALMIELP 87 (128)
T ss_pred hccccCCCchHH-----HHhhheeeeCCCceEEecC
Confidence 456666777773 3347789999999888445
No 25
>PF15121 TMEM71: TMEM71 protein family
Probab=26.36 E-value=32 Score=27.85 Aligned_cols=23 Identities=26% Similarity=0.679 Sum_probs=19.1
Q ss_pred hcccccccccCCccEEEecCCCC
Q psy9888 132 VLTDFNMSCDDSGKLILKPRPST 154 (156)
Q Consensus 132 vL~~fnmscd~~GkLIlkpr~~~ 154 (156)
++.+=..-||++|.+-|.|.|++
T Consensus 71 i~TEDSFl~D~dGNITLsPsqTs 93 (149)
T PF15121_consen 71 IWTEDSFLCDEDGNITLSPSQTS 93 (149)
T ss_pred EEeccceeecCCCCEeecCccce
Confidence 45556788999999999999875
No 26
>PHA03171 UL37 tegument protein; Provisional
Probab=26.33 E-value=41 Score=31.74 Aligned_cols=39 Identities=26% Similarity=0.479 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHH-HhhcccccccchhhHHHHHhhcccccccccCCccEEEe
Q psy9888 100 FAISSAILIILF-LLGIHKRVIAPSIITSRARLVLTDFNMSCDDSGKLILK 149 (156)
Q Consensus 100 Ft~s~~~li~Lf-~~Gihkrvvapsii~~r~R~vL~~fnmscd~~GkLIlk 149 (156)
++...+.|+.|| ++-| .+=|+.|.||..-|.|.|.---|
T Consensus 453 VaaGsiaLLsLFCilli-----------~~RRdLleDfRy~~~d~~~~~~~ 492 (499)
T PHA03171 453 AAAGSIAILSLFCILLF-----------GLRRDLIEDFRYICQDDDHFFID 492 (499)
T ss_pred HHHhHHHHHHHHHHHHH-----------HHHHHHHHHHHHHhhcCCCcccc
Confidence 444556677776 3322 34589999999999998875544
No 27
>PF14903 WG_beta_rep: WG containing repeat
Probab=26.27 E-value=52 Score=18.50 Aligned_cols=14 Identities=29% Similarity=0.729 Sum_probs=11.1
Q ss_pred ccCCccEEEecCCC
Q psy9888 140 CDDSGKLILKPRPS 153 (156)
Q Consensus 140 cd~~GkLIlkpr~~ 153 (156)
.|.+||.|+.|.-+
T Consensus 4 id~~G~~vi~~~yd 17 (35)
T PF14903_consen 4 IDKNGKIVIPPKYD 17 (35)
T ss_pred EeCCCCEEEEcccc
Confidence 58899999988543
No 28
>PRK01294 lipase chaperone; Provisional
Probab=26.01 E-value=49 Score=29.43 Aligned_cols=29 Identities=28% Similarity=0.544 Sum_probs=20.4
Q ss_pred cchhHHHHHHHHHHHhhhceeeccCCCCcc
Q psy9888 58 TKRWRLVLAFISMCTAVGAFYWLTDPDTSN 87 (156)
Q Consensus 58 t~RWRiiL~~~s~ct~~~a~~wl~Dp~t~~ 87 (156)
..|| ++++++++|.+.+.|.|.-++.++.
T Consensus 3 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (336)
T PRK01294 3 KKRA-LSLGLVGLVAIGAVWLWPGDPANSS 31 (336)
T ss_pred chhh-HHHHHHHHHHHHHHHHhcCcccCCC
Confidence 3456 6777788888888888887765543
No 29
>PF01692 Paramyxo_C: Paramyxovirus non-structural protein c; InterPro: IPR002608 This family consist of the C proteins (C', C, Y1, Y2) found in the Paramyxovirinae, e.g. Human parainfluenza virus 3, and Sendai virus. The C proteins effect viral RNA synthesis having both a positive and negative effect during the course of infection []. The paramyxovirinae have a negative-strand ssRNA genome of 15.3 kb from which six mRNAs are transcribed, five of these are monocistronic. The P/C mRNA is polycistronic and has two overlapping open reading frames P and C, C encodes the nested C proteins C', C, Y1 and Y2 [].; GO: 0030683 evasion by virus of host immune response
Probab=26.00 E-value=26 Score=29.55 Aligned_cols=43 Identities=23% Similarity=0.139 Sum_probs=27.5
Q ss_pred CCCCCcchhhHHhhhCcchhhhhhhHhHHHHHHHHHhhhcccC
Q psy9888 13 DPDTSNCSFCQSLWNHPFFAISSAILNLKAFERRLTEVIACSG 55 (156)
Q Consensus 13 DP~t~~v~~~~SL~nH~~FtiSsacEdlkaFErRl~evi~~~~ 55 (156)
+|+++.+-+--.+..-..-.+---|..||.|.+|-.||+.+++
T Consensus 140 ~~~~R~~~i~MK~ERWiRTLiRGk~~~Lk~FQ~RYeEV~pyL~ 182 (204)
T PF01692_consen 140 RPDIRDQLITMKTERWIRTLIRGKCDNLKDFQKRYEEVHPYLM 182 (204)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhHHHH
Confidence 3444433333333333334455668899999999999998875
No 30
>PTZ00078 Superoxide dismutase [Fe]; Provisional
Probab=25.49 E-value=16 Score=29.82 Aligned_cols=67 Identities=15% Similarity=0.167 Sum_probs=43.3
Q ss_pred hhhCcchhhhhhhHhHHHHHHHHHhhhcccCCCcchhHHHHHHHHHHHhhhceeeccCCCCccchhh
Q psy9888 25 LWNHPFFAISSAILNLKAFERRLTEVIACSGPSTKRWRLVLAFISMCTAVGAFYWLTDPDTSNCSFC 91 (156)
Q Consensus 25 L~nH~~FtiSsacEdlkaFErRl~evi~~~~P~t~RWRiiL~~~s~ct~~~a~~wl~Dp~t~~~~~~ 91 (156)
.+||-+|-=+..-.....=.++|.+-|...=.+-.+||--+...+.-...++|-||..+...+..+.
T Consensus 66 ~~NH~lfw~~L~p~g~~~p~g~L~~~I~~~FGS~d~fk~~f~~~a~~~fGsGWvwLv~~~~~~L~i~ 132 (193)
T PTZ00078 66 IWNHNFYWLSMGPNGGGEPTGEIKEKIDEKFGSFDNFKNEFSNVLSGHFGSGWGWLVLKNDGKLEIV 132 (193)
T ss_pred HHHHHHHHHhcCCCCCCCCChHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCeEEEEEECCCCcEEEE
Confidence 4677777655432100011245667777766778889988888787777889999987644444443
No 31
>TIGR01439 lp_hng_hel_AbrB looped-hinge helix DNA binding domain, AbrB family. This DNA-binding domain family includes AbrB, a transition state regulator in Bacillus subtilis, whose DNA-binding domain structure in solution was determined by NMR. The domain binds DNA as a dimer in what is termed a looped-hinge helix fold. Some members of the family have two copies of the domain in tandem. The domain is found usually at the N-terminus of a small protein. This model excludes members of family TIGR02609.
Probab=24.76 E-value=58 Score=19.25 Aligned_cols=27 Identities=26% Similarity=0.455 Sum_probs=18.5
Q ss_pred hHHHHHhhc-----ccccccccCCccEEEecC
Q psy9888 125 ITSRARLVL-----TDFNMSCDDSGKLILKPR 151 (156)
Q Consensus 125 i~~r~R~vL-----~~fnmscd~~GkLIlkpr 151 (156)
|++..|..| ..+.+.-+++|+|+++|-
T Consensus 11 iP~~~r~~l~~~~gd~~~i~~~~~~~l~l~p~ 42 (43)
T TIGR01439 11 IPKEIREKLGLKEGDRLEVIRVEDGEIILRPA 42 (43)
T ss_pred ecHHHHHHcCcCCCCEEEEEEeCCCEEEEEEC
Confidence 334555565 567776677899999973
No 32
>COG3101 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.73 E-value=29 Score=28.66 Aligned_cols=11 Identities=55% Similarity=1.199 Sum_probs=9.2
Q ss_pred cccccccC-Ccc
Q psy9888 135 DFNMSCDD-SGK 145 (156)
Q Consensus 135 ~fnmscd~-~Gk 145 (156)
+||.|||+ +|.
T Consensus 113 pf~vScDNL~Gd 124 (180)
T COG3101 113 PFNVSCDNLEGD 124 (180)
T ss_pred ceeeeccccCCC
Confidence 79999998 774
No 33
>PLN02622 iron superoxide dismutase
Probab=24.66 E-value=17 Score=31.46 Aligned_cols=68 Identities=19% Similarity=0.181 Sum_probs=42.6
Q ss_pred HhhhCcchhhhhhhHhHHHHHHHHHhhhcccCCCcchhHHHHHHHHHHHhhhceeec-cCCCCccchhh
Q psy9888 24 SLWNHPFFAISSAILNLKAFERRLTEVIACSGPSTKRWRLVLAFISMCTAVGAFYWL-TDPDTSNCSFC 91 (156)
Q Consensus 24 SL~nH~~FtiSsacEdlkaFErRl~evi~~~~P~t~RWRiiL~~~s~ct~~~a~~wl-~Dp~t~~~~~~ 91 (156)
..+||-+|--+..-.....=.+.|.+-|...=.+-..||--+...+.-...++|-|| .|+++.+..++
T Consensus 121 g~~NH~~Fw~~L~P~g~~~P~g~L~~aI~~~FGS~d~Fk~~F~~aA~s~fGSGW~WLv~d~~~g~L~I~ 189 (261)
T PLN02622 121 QVWNHDFFWESMQPGGGDMPELGVLEQIEKDFGSFTNFREKFTEAALTLFGSGWVWLVLKREERRLEVV 189 (261)
T ss_pred hHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCceEEEEEEeCCCCeEEEE
Confidence 358898887664311000011344555555545677899888888888888999999 46655554444
No 34
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=23.32 E-value=67 Score=21.52 Aligned_cols=17 Identities=18% Similarity=0.563 Sum_probs=13.5
Q ss_pred CcchhHHHHHHHHHHHh
Q psy9888 57 STKRWRLVLAFISMCTA 73 (156)
Q Consensus 57 ~t~RWRiiL~~~s~ct~ 73 (156)
...||=++++++.+|++
T Consensus 2 kk~rwiili~iv~~Cl~ 18 (47)
T PRK10299 2 KKFRWVVLVVVVLACLL 18 (47)
T ss_pred ceeeehHHHHHHHHHHH
Confidence 35799888888888877
No 35
>PF02706 Wzz: Chain length determinant protein; InterPro: IPR003856 A number of related proteins are involved in the synthesis of lipopolysaccharide, O-antigen polysaccharide, capsule polysaccharide and exopolysaccharides. Chain length determinant protein (or wzz protein) is involved in lipopolysaccharide (lps) biosynthesis, conferring a modal distribution of chain length on the O-antigen component of lps []. It gives rise to a reduced number of short chain molecules and increases in numbers of longer molecules, with a modal value of 20. The MPA/MPA2 proteins function in CPS and EPS polymerisation and export [].; GO: 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane; PDB: 4E2H_C 3B8P_A 4E2C_B 4E29_A 3B8O_G 4E2L_I 3B8N_D 3B8M_C.
Probab=22.42 E-value=26 Score=25.51 Aligned_cols=29 Identities=14% Similarity=0.245 Sum_probs=0.8
Q ss_pred chhHHHHHHHHHHHhhhceeeccCCCCcc
Q psy9888 59 KRWRLVLAFISMCTAVGAFYWLTDPDTSN 87 (156)
Q Consensus 59 ~RWRiiL~~~s~ct~~~a~~wl~Dp~t~~ 87 (156)
.||+++++++.+++++|+.+-+.-|..++
T Consensus 14 r~~~~i~~~~~l~~~~a~~~~~~~~~~Y~ 42 (152)
T PF02706_consen 14 RRKWLIIIVTLLFAILAFIYAFFAPPQYE 42 (152)
T ss_dssp ---------------------------EE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccce
Confidence 46778888888888777766665554443
No 36
>PF14857 TMEM151: TMEM151 family
Probab=21.48 E-value=1.6e+02 Score=27.66 Aligned_cols=53 Identities=23% Similarity=0.406 Sum_probs=34.5
Q ss_pred chhHHHHH--HHHHHHhhhceeeccCC-------C--CccchhhhhhhhchhHHHHHHHHHHHH
Q psy9888 59 KRWRLVLA--FISMCTAVGAFYWLTDP-------D--TSNCSFCQSLWNHPFFAISSAILIILF 111 (156)
Q Consensus 59 ~RWRiiL~--~~s~ct~~~a~~wl~Dp-------~--t~~~~~~~sL~~H~~Ft~s~~~li~Lf 111 (156)
.-|+.++. ++..|.+..||..++.- . -....+.+|......--|-.+.+++|+
T Consensus 16 s~wkCl~lsll~~~C~~~v~wC~~~~v~~~~~~~~~~~~~~~y~~spc~~GyiyIplaf~~mlY 79 (425)
T PF14857_consen 16 SHWKCLLLSLLMYGCLGAVAWCQLTYVTKLSFDSAYKGRSMTYHDSPCSDGYIYIPLAFLIMLY 79 (425)
T ss_pred cccHHHHHHHHHHHHHHHheeeEeeEEEeecccccccCCcceecCCCcccchhhHHHHHHHHHH
Confidence 34998887 89999999999998652 1 111224456666665556555555554
No 37
>PF03032 Brevenin: Brevenin/esculentin/gaegurin/rugosin family; InterPro: IPR004275 In addition to the highly specific cell-mediated immune system, vertebrates possess an efficient host-defence mechanism against invading microorganisms which involves the synthesis of highly potent antimicrobial peptides with a large spectrum of activity. This entry represents a number of these defence peptides secreted from the skin of amphibians, including the opiate-like dermorphins and deltorphins, and the antimicrobial dermoseptins and temporins.; GO: 0006952 defense response, 0042742 defense response to bacterium, 0005576 extracellular region
Probab=21.39 E-value=57 Score=21.45 Aligned_cols=10 Identities=50% Similarity=1.026 Sum_probs=8.0
Q ss_pred HHHHHHHhhc
Q psy9888 106 ILIILFLLGI 115 (156)
Q Consensus 106 ~li~Lf~~Gi 115 (156)
+|++||++|+
T Consensus 6 sllLlfflG~ 15 (46)
T PF03032_consen 6 SLLLLFFLGT 15 (46)
T ss_pred HHHHHHHHHH
Confidence 5778888886
No 38
>PHA03255 BDLF3; Provisional
Probab=21.29 E-value=85 Score=26.70 Aligned_cols=34 Identities=29% Similarity=0.631 Sum_probs=25.0
Q ss_pred CCCccchhhhhh--hhchhHHHHHHHHHHHHHhhcc
Q psy9888 83 PDTSNCSFCQSL--WNHPFFAISSAILIILFLLGIH 116 (156)
Q Consensus 83 p~t~~~~~~~sL--~~H~~Ft~s~~~li~Lf~~Gih 116 (156)
|++.|-+...-| |.--|..+-+..||+.|..|+-
T Consensus 171 pdekqps~~~glplwtlvfvgltflmlilifaagim 206 (234)
T PHA03255 171 PDERQPSLSYGLPLWTLVFVGLTFLMLILIFAAGLM 206 (234)
T ss_pred CcccCcccccCchHHHHHHHHHHHHHHHHHHHhhHh
Confidence 566665555554 7777777888899999988874
No 39
>PRK10183 hypothetical protein; Provisional
Probab=20.66 E-value=53 Score=22.70 Aligned_cols=14 Identities=29% Similarity=0.648 Sum_probs=11.9
Q ss_pred cccccccCCccEEE
Q psy9888 135 DFNMSCDDSGKLIL 148 (156)
Q Consensus 135 ~fnmscd~~GkLIl 148 (156)
.|.+--.-+|||||
T Consensus 41 ~Y~LR~Tr~GKLIL 54 (56)
T PRK10183 41 EYLLRKTQAGKLLL 54 (56)
T ss_pred EEEeEEccCCceEe
Confidence 57788888999998
No 40
>PHA02692 hypothetical protein; Provisional
Probab=20.50 E-value=1.6e+02 Score=21.15 Aligned_cols=23 Identities=13% Similarity=0.167 Sum_probs=18.1
Q ss_pred hhhhhHhHHHHHHHHHhhhcccC
Q psy9888 33 ISSAILNLKAFERRLTEVIACSG 55 (156)
Q Consensus 33 iSsacEdlkaFErRl~evi~~~~ 55 (156)
+|+.-||.-.|=+-.+.|++--.
T Consensus 13 mss~DdDF~~Fi~vVksVLtDk~ 35 (70)
T PHA02692 13 LSNSDEDFEEFLNIVRTVMTEKP 35 (70)
T ss_pred cCCCHHHHHHHHHHHHHHHcCCC
Confidence 45667899999888888888763
No 41
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=20.28 E-value=73 Score=33.08 Aligned_cols=37 Identities=27% Similarity=0.455 Sum_probs=33.0
Q ss_pred HHHHHHhhhcccCCCcchhHHHHHHHHHHHhhhceeeccCCCC
Q psy9888 43 FERRLTEVIACSGPSTKRWRLVLAFISMCTAVGAFYWLTDPDT 85 (156)
Q Consensus 43 FErRl~evi~~~~P~t~RWRiiL~~~s~ct~~~a~~wl~Dp~t 85 (156)
-|||| ++|...+|+-+|.+.-+....+-|+.|+.|+-
T Consensus 10 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (1096)
T TIGR00927 10 QERRL------LRPKRLHWSRLLFLLGMLIIGSTYQHLRRPQG 46 (1096)
T ss_pred hhhhh------cccchhhHHHHHHHHHHHHhhhhHHHhcCCCC
Confidence 47776 78999999999999999999999999999865
Done!