Query psy9888
Match_columns 156
No_of_seqs 81 out of 83
Neff 4.0
Searched_HMMs 29240
Date Fri Aug 16 22:11:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9888.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9888hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kl8_A OR15; structural genomi 43.2 9.2 0.00032 26.8 1.4 19 37-55 9-27 (85)
2 3j1r_A Archaeal adhesion filam 26.0 24 0.00083 20.1 1.0 18 63-80 8-25 (26)
3 2jra_A Protein RPA2121; domain 21.3 33 0.0011 23.4 1.1 16 134-149 51-66 (67)
4 2loj_A Putative cytoplasmic pr 21.3 31 0.0011 23.3 1.0 15 134-148 47-61 (63)
5 4hhu_A OR280; engineered prote 19.2 41 0.0014 26.1 1.3 19 36-54 9-27 (170)
6 1ids_A Iron superoxide dismuta 18.4 5.7 0.0002 31.9 -3.8 66 26-91 74-140 (207)
7 3rqw_A ELIC pentameric ligand 17.0 1.6E+02 0.0055 23.6 4.6 71 62-132 231-303 (322)
8 2lly_A Neuronal acetylcholine 14.8 1.8E+02 0.0063 21.2 4.0 58 62-119 38-98 (137)
9 3dc5_A Superoxide dismutase [M 13.7 43 0.0015 26.6 0.2 48 45-92 91-139 (195)
10 2q67_A Potassium channel prote 13.4 1.4E+02 0.0049 20.7 3.0 19 62-80 25-43 (114)
No 1
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=43.24 E-value=9.2 Score=26.78 Aligned_cols=19 Identities=37% Similarity=0.429 Sum_probs=16.3
Q ss_pred hHhHHHHHHHHHhhhcccC
Q psy9888 37 ILNLKAFERRLTEVIACSG 55 (156)
Q Consensus 37 cEdlkaFErRl~evi~~~~ 55 (156)
..||.|||+-|+|+|..-+
T Consensus 9 gddleafekalkemirqar 27 (85)
T 2kl8_A 9 GDDLEAFEKALKEMIRQAR 27 (85)
T ss_dssp CSSHHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHHHH
Confidence 5799999999999997654
No 2
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=25.98 E-value=24 Score=20.12 Aligned_cols=18 Identities=33% Similarity=0.707 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhhhceeec
Q psy9888 63 LVLAFISMCTAVGAFYWL 80 (156)
Q Consensus 63 iiL~~~s~ct~~~a~~wl 80 (156)
++|+++++..++-.|.|+
T Consensus 8 ~lLIviav~aaVllylW~ 25 (26)
T 3j1r_A 8 LLLILIAVAAAVLLYTWV 25 (26)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 578889999999999986
No 3
>2jra_A Protein RPA2121; domain-swapped dimer, structural genomics, PSI, protein STRU initiative, northeast structural genomics consortium; NMR {Rhodopseudomonas palustris}
Probab=21.34 E-value=33 Score=23.45 Aligned_cols=16 Identities=25% Similarity=0.472 Sum_probs=13.0
Q ss_pred ccccccccCCccEEEe
Q psy9888 134 TDFNMSCDDSGKLILK 149 (156)
Q Consensus 134 ~~fnmscd~~GkLIlk 149 (156)
..|.+--..+|||||-
T Consensus 51 ~~Y~LR~Tr~GKLILT 66 (67)
T 2jra_A 51 DRYRLRLTSQNKLILT 66 (67)
T ss_dssp EEEEEEECTTSCEEEE
T ss_pred eEEEeEEccCCceeec
Confidence 3588888899999983
No 4
>2loj_A Putative cytoplasmic protein; pathogenic bacterial protein, PSI-biology, northeast structu genomics consortium (NESG); NMR {Salmonella enterica subsp}
Probab=21.31 E-value=31 Score=23.29 Aligned_cols=15 Identities=27% Similarity=0.605 Sum_probs=12.4
Q ss_pred ccccccccCCccEEE
Q psy9888 134 TDFNMSCDDSGKLIL 148 (156)
Q Consensus 134 ~~fnmscd~~GkLIl 148 (156)
..|.+--..+|||||
T Consensus 47 ~~Y~LR~Tr~GKLIL 61 (63)
T 2loj_A 47 QEYLLRKTQAGKLLL 61 (63)
T ss_dssp EEEEEEEETTTEEEE
T ss_pred eEEEeEEccCCceee
Confidence 358888888999998
No 5
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=19.16 E-value=41 Score=26.06 Aligned_cols=19 Identities=32% Similarity=0.359 Sum_probs=16.0
Q ss_pred hhHhHHHHHHHHHhhhccc
Q psy9888 36 AILNLKAFERRLTEVIACS 54 (156)
Q Consensus 36 acEdlkaFErRl~evi~~~ 54 (156)
.-+||.|||+-|+|+|..-
T Consensus 9 ~gddlea~ekalkemirqa 27 (170)
T 4hhu_A 9 EGDDLEALEKALKEMIRQA 27 (170)
T ss_dssp ECSCHHHHHHHHHHHHHHH
T ss_pred ecCcHHHHHHHHHHHHHHH
Confidence 4579999999999999654
No 6
>1ids_A Iron superoxide dismutase; 2.00A {Mycobacterium tuberculosis} SCOP: a.2.11.1 d.44.1.1 PDB: 1gn2_A 1gn3_A 1gn6_A 1gn4_A
Probab=18.43 E-value=5.7 Score=31.93 Aligned_cols=66 Identities=14% Similarity=-0.011 Sum_probs=39.0
Q ss_pred hhCcchhhhhhhHhHHHHHHHHHhhhcccCCCcchhHHHHHHHHHHHhhhceeecc-CCCCccchhh
Q psy9888 26 WNHPFFAISSAILNLKAFERRLTEVIACSGPSTKRWRLVLAFISMCTAVGAFYWLT-DPDTSNCSFC 91 (156)
Q Consensus 26 ~nH~~FtiSsacEdlkaFErRl~evi~~~~P~t~RWRiiL~~~s~ct~~~a~~wl~-Dp~t~~~~~~ 91 (156)
+||-+|-=+..-.....=.+.|.+-|...=.|-..+|--+...+.-...++|-||. ||++.+..+.
T Consensus 74 ~NHs~fw~~L~P~gg~~P~g~L~~aI~~~FGS~d~fk~~F~~aa~~~fGSGW~WLv~~~~~g~L~I~ 140 (207)
T 1ids_A 74 VNHTIWWKNLSPNGGDKPTGELAAAIADAFGSFDKFRAQFHAAATTVQGSGWAALGWDTLGNKLLIF 140 (207)
T ss_dssp HHHHHHHHHBCTTCCSCCCHHHHHHHHHHHSSHHHHHHHHHHHHHCCSSSEEEEEEEETTTTEEEEE
T ss_pred HHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCeEEEEEEECCCCeEEEE
Confidence 67766643332110001123445555544456677888888888888899999996 6665554444
No 7
>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 2yn6_A* 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A 4a97_A* 4a96_A* 2yoe_A* 4a98_A*
Probab=17.03 E-value=1.6e+02 Score=23.61 Aligned_cols=71 Identities=23% Similarity=0.344 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhhhceeeccC--CCCccchhhhhhhhchhHHHHHHHHHHHHHhhcccccccchhhHHHHHhh
Q psy9888 62 RLVLAFISMCTAVGAFYWLTD--PDTSNCSFCQSLWNHPFFAISSAILIILFLLGIHKRVIAPSIITSRARLV 132 (156)
Q Consensus 62 RiiL~~~s~ct~~~a~~wl~D--p~t~~~~~~~sL~~H~~Ft~s~~~li~Lf~~Gihkrvvapsii~~r~R~v 132 (156)
|+.|++..+.+.+.--.=+.| |+++.+|.++-...--+..+.+.++.-.++.-+|+|--...-...-.|.+
T Consensus 231 Rv~l~it~lL~~~~~~~~~~~~lP~~s~vp~i~~~~~~~~~~v~~sll~~~~v~~l~~~~~~~~~~p~w~r~~ 303 (322)
T 3rqw_A 231 RLQTSFTLMLTVVAYAFYTSNILPRLPYTTVIDQMIIAGYGSIFAAILLIIFAHHRQANGVEDDLLIQRCRLA 303 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHSSSSSSCCCHHHHTCTTH
T ss_pred cEEEEEehHHHHHHHHHHHhhhCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccCcchHHHHH
Confidence 566665555444332222233 88888888865433222222233333344666777644322334444443
No 8
>2lly_A Neuronal acetylcholine receptor subunit alpha-4; transmembrane domain, transport PROT; NMR {Homo sapiens}
Probab=14.83 E-value=1.8e+02 Score=21.22 Aligned_cols=58 Identities=19% Similarity=0.333 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhhhceeeccC--CCCc-cchhhhhhhhchhHHHHHHHHHHHHHhhccccc
Q psy9888 62 RLVLAFISMCTAVGAFYWLTD--PDTS-NCSFCQSLWNHPFFAISSAILIILFLLGIHKRV 119 (156)
Q Consensus 62 RiiL~~~s~ct~~~a~~wl~D--p~t~-~~~~~~sL~~H~~Ft~s~~~li~Lf~~Gihkrv 119 (156)
|+.+++..+.+.+.--.-+.| |+|+ .+|..+....--...+...++.-.+...+|+|-
T Consensus 38 Rv~lgit~lLs~tv~l~~~~~~lP~tS~~vpli~~y~~~~~~~v~~sl~~tv~V~~~~~r~ 98 (137)
T 2lly_A 38 KITLCISVLLSLTVFLLLITEIIPSTSSVSPSIGEYLLFTMIFVTLSIVITVFVLNVHHRS 98 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSCCSSSCCSTHHHHHHHHHHHHHHHHHHHHHHHCCSSC
T ss_pred eEEEEeeeHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHHHHhhhhhhhhhHHhcC
Confidence 666655544443332222333 7776 688776543333333333333333456777763
No 9
>3dc5_A Superoxide dismutase [MN] 2; alpha hairpin N domain, alpha/beta C domain, oxidoreductase, manganese, metal-binding, mitochondrion; 1.70A {Caenorhabditis elegans} PDB: 3dc6_A
Probab=13.69 E-value=43 Score=26.58 Aligned_cols=48 Identities=15% Similarity=0.141 Sum_probs=32.2
Q ss_pred HHHHhhhcccCCCcchhHHHHHHHHHHHhhhceeecc-CCCCccchhhh
Q psy9888 45 RRLTEVIACSGPSTKRWRLVLAFISMCTAVGAFYWLT-DPDTSNCSFCQ 92 (156)
Q Consensus 45 rRl~evi~~~~P~t~RWRiiL~~~s~ct~~~a~~wl~-Dp~t~~~~~~~ 92 (156)
+.|.+-|...=.|-..+|--+...+.-...|+|-||. ||++.+..+.+
T Consensus 91 g~L~~aI~~~FGS~e~fk~~F~~aa~~~fGSGW~WLv~~~~~~~L~i~~ 139 (195)
T 3dc5_A 91 KELMDTIKRDFGSLDNLQKRLSDITIAVQGSGWGWLGYCKKDKILKIAT 139 (195)
T ss_dssp HHHHHHHHHHHSSHHHHHHHHHHHHHTCCSSEEEEEEEETTTTEEEEEE
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhCCcceEEEEEEECCCCeEEEEe
Confidence 3444555444455667877777777777889999996 77666555543
No 10
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=13.42 E-value=1.4e+02 Score=20.74 Aligned_cols=19 Identities=5% Similarity=0.375 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHhhhceeec
Q psy9888 62 RLVLAFISMCTAVGAFYWL 80 (156)
Q Consensus 62 RiiL~~~s~ct~~~a~~wl 80 (156)
+.++.++.+....|+..|.
T Consensus 25 ~~~~~~~~~~~~~g~~~~~ 43 (114)
T 2q67_A 25 QVLFVLTILTLISGTIFYS 43 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555443
Done!