Query psy9888
Match_columns 156
No_of_seqs 81 out of 83
Neff 4.0
Searched_HMMs 13730
Date Fri Aug 16 22:11:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9888.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/9888hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1e12a_ f.13.1.1 (A:) Halorhod 32.1 24 0.0017 26.3 4.3 27 54-80 29-55 (239)
2 d1r3jc_ f.14.1.1 (C:) Potassiu 30.0 8 0.00058 25.1 1.0 39 57-95 1-46 (103)
3 d1oeda_ f.36.1.1 (A:) Acetylch 27.2 8 0.00058 27.8 0.7 73 62-134 32-107 (227)
4 d1oedb_ f.36.1.1 (B:) Acetylch 25.2 8.9 0.00065 27.7 0.6 71 62-133 32-106 (250)
5 d1cvra1 b.1.18.12 (A:351-432) 21.1 13 0.00094 24.5 0.7 14 133-146 16-29 (82)
6 d1m0ka_ f.13.1.1 (A:) Bacterio 17.2 25 0.0018 26.1 1.6 26 55-80 29-54 (227)
7 d1oedc_ f.36.1.1 (C:) Acetylch 15.1 18 0.0013 25.9 0.3 59 62-120 32-93 (260)
8 d1ma1a2 d.44.1.1 (A:92-204) Fe 12.5 34 0.0025 22.9 1.2 43 47-89 10-53 (113)
9 d1oede_ f.36.1.1 (E:) Acetylch 12.5 24 0.0018 25.4 0.4 57 62-118 33-92 (260)
10 d1pd0a5 g.41.10.1 (A:216-300) 12.4 13 0.00097 23.8 -1.0 18 127-145 17-34 (85)
No 1
>d1e12a_ f.13.1.1 (A:) Halorhodopsin {Archaeon Halobacterium salinarum [TaxId: 2242]}
Probab=32.11 E-value=24 Score=26.32 Aligned_cols=27 Identities=22% Similarity=0.122 Sum_probs=23.1
Q ss_pred cCCCcchhHHHHHHHHHHHhhhceeec
Q psy9888 54 SGPSTKRWRLVLAFISMCTAVGAFYWL 80 (156)
Q Consensus 54 ~~P~t~RWRiiL~~~s~ct~~~a~~wl 80 (156)
.+....+||..+.+..+.+++.+++++
T Consensus 29 ~~~~~~~~R~~~~l~~~I~~IA~~~Y~ 55 (239)
T d1e12a_ 29 RTIRPGRPRLIWGATLMIPLVSISSYL 55 (239)
T ss_dssp TTCCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCchhhhhHHHHHHHHHHHHHHH
Confidence 355568999999999999999999886
No 2
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=29.97 E-value=8 Score=25.14 Aligned_cols=39 Identities=18% Similarity=0.513 Sum_probs=19.9
Q ss_pred CcchhHHH---HHHHHHHHhhhceeecc----CCCCccchhhhhhh
Q psy9888 57 STKRWRLV---LAFISMCTAVGAFYWLT----DPDTSNCSFCQSLW 95 (156)
Q Consensus 57 ~t~RWRii---L~~~s~ct~~~a~~wl~----Dp~t~~~~~~~sL~ 95 (156)
++.+||.+ +.++.++..++++.+.. +|++...++.+++|
T Consensus 1 sal~~r~~~~~~~~~~~~~~~~s~~~~~~e~~~~~~~~~s~~~aly 46 (103)
T d1r3jc_ 1 SALHWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALW 46 (103)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccCchhhhhh
Confidence 45789844 33444444555544442 23333445666664
No 3
>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=27.23 E-value=8 Score=27.84 Aligned_cols=73 Identities=14% Similarity=0.260 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhhhceeeccC--CCCc-cchhhhhhhhchhHHHHHHHHHHHHHhhcccccccchhhHHHHHhhcc
Q psy9888 62 RLVLAFISMCTAVGAFYWLTD--PDTS-NCSFCQSLWNHPFFAISSAILIILFLLGIHKRVIAPSIITSRARLVLT 134 (156)
Q Consensus 62 RiiL~~~s~ct~~~a~~wl~D--p~t~-~~~~~~sL~~H~~Ft~s~~~li~Lf~~Gihkrvvapsii~~r~R~vL~ 134 (156)
|+-|++..+.+.+---.-+.| |.|+ .+|.++-...--...+++.++.--+...+|+|-.-..-.....|.++-
T Consensus 32 Ri~l~it~lL~~~v~~~~v~~~lP~tS~~vPli~~y~~~~~~~v~~sli~tiiV~~l~~~~~~~~~~p~w~r~~~~ 107 (227)
T d1oeda_ 32 KMTLSISVLLSLTVFLLVIVELIPSTSSAVPLIGKYMLFTMIFVISSIIITVVVINTHHRSPSTHTMPQWVRKIFI 107 (227)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHC---------------
T ss_pred cEEeeHHHHHHHHHHHHHHHHhCCCcccCcCccchHHHHHHHHHHHHHHHHHHHhheeccCCCCCCCchHHHHHHH
Confidence 666666665555444444444 7776 577776543333333333333444467788775444445555565553
No 4
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=25.22 E-value=8.9 Score=27.71 Aligned_cols=71 Identities=17% Similarity=0.358 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhhhceee-ccC--CCCc-cchhhhhhhhchhHHHHHHHHHHHHHhhcccccccchhhHHHHHhhc
Q psy9888 62 RLVLAFISMCTAVGAFYW-LTD--PDTS-NCSFCQSLWNHPFFAISSAILIILFLLGIHKRVIAPSIITSRARLVL 133 (156)
Q Consensus 62 RiiL~~~s~ct~~~a~~w-l~D--p~t~-~~~~~~sL~~H~~Ft~s~~~li~Lf~~Gihkrvvapsii~~r~R~vL 133 (156)
|+-|++..+.+ ...+.. +.| |.|+ .+|+++....--.+.+++.++.--+...+|+|-....-...-.|.++
T Consensus 32 r~~l~it~lL~-~~~~~~~v~~~~P~~s~~~p~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~p~P~wvR~lf 106 (250)
T d1oedb_ 32 KMSLSISALLA-VTVFLLLLADKVPETSLSVPIIIRYLMFIMILVAFSVILSVVVLNLHHRSPNTHTMPNWIRQIF 106 (250)
T ss_dssp GHHHHHHHHHH-HHHHHHHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHTC--------------
T ss_pred cEEeeHHHHHH-HHHHHHHHHHhCCCCcCcchHHHHHHHHHHHHHHHHHHHHHhheeeeccCcccCCcchHHHHHH
Confidence 56666555543 333333 344 6765 67777665444455555556666678889988554344445555544
No 5
>d1cvra1 b.1.18.12 (A:351-432) Gingipain R (RgpB), C-terminal domain {Porphyromonas gingivalis [TaxId: 837]}
Probab=21.13 E-value=13 Score=24.46 Aligned_cols=14 Identities=29% Similarity=0.778 Sum_probs=11.0
Q ss_pred cccccccccCCccE
Q psy9888 133 LTDFNMSCDDSGKL 146 (156)
Q Consensus 133 L~~fnmscd~~GkL 146 (156)
-+-||.+||-||-+
T Consensus 16 ~~s~~v~cdyngai 29 (82)
T d1cvra1 16 AQTFEVACDYNGAI 29 (82)
T ss_dssp CSEEEEEESSTTCE
T ss_pred cceEEEEeccCceE
Confidence 35699999988765
No 6
>d1m0ka_ f.13.1.1 (A:) Bacteriorhodopsin {Archaeon Halobacterium salinarum [TaxId: 2242]}
Probab=17.17 E-value=25 Score=26.11 Aligned_cols=26 Identities=19% Similarity=0.255 Sum_probs=22.4
Q ss_pred CCCcchhHHHHHHHHHHHhhhceeec
Q psy9888 55 GPSTKRWRLVLAFISMCTAVGAFYWL 80 (156)
Q Consensus 55 ~P~t~RWRiiL~~~s~ct~~~a~~wl 80 (156)
+-+..|||..+.+..+.+++++++++
T Consensus 29 ~v~~~~~r~~~~~~~~i~~IA~~~Y~ 54 (227)
T d1m0ka_ 29 GVSDPDAKKFYAITTLVPAIAFTMYL 54 (227)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcchhhhhHHHHHHHHHHHHHHH
Confidence 44457999999999999999999986
No 7
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=15.10 E-value=18 Score=25.87 Aligned_cols=59 Identities=12% Similarity=0.138 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhhhceeeccC--CCCc-cchhhhhhhhchhHHHHHHHHHHHHHhhcccccc
Q psy9888 62 RLVLAFISMCTAVGAFYWLTD--PDTS-NCSFCQSLWNHPFFAISSAILIILFLLGIHKRVI 120 (156)
Q Consensus 62 RiiL~~~s~ct~~~a~~wl~D--p~t~-~~~~~~sL~~H~~Ft~s~~~li~Lf~~Gihkrvv 120 (156)
|+-|++..+.+.+--..-+.| |.|+ .+|+.+-...--.+.+++.++.--++..+|+|--
T Consensus 32 r~~l~it~lLs~~vf~~~v~~~lP~tS~~vPli~~y~~~~~~~v~~s~~~t~~Vl~~~~~~~ 93 (260)
T d1oedc_ 32 KMSTAISVLLAQAVFLLLTSQRLPETALAVPLIGKYLMFIMSLVTGVIVNCGIVLNFHFRTP 93 (260)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred cEEeeHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhheeeeeccc
Confidence 566665555444433334455 6765 6777765544444455555555556788887754
No 8
>d1ma1a2 d.44.1.1 (A:92-204) Fe superoxide dismutase (FeSOD) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=12.55 E-value=34 Score=22.91 Aligned_cols=43 Identities=21% Similarity=0.114 Sum_probs=29.3
Q ss_pred HHhhhcccCCCcchhHHHHHHHHHHHhhhceeecc-CCCCccch
Q psy9888 47 LTEVIACSGPSTKRWRLVLAFISMCTAVGAFYWLT-DPDTSNCS 89 (156)
Q Consensus 47 l~evi~~~~P~t~RWRiiL~~~s~ct~~~a~~wl~-Dp~t~~~~ 89 (156)
|.|-|...=.|-..||--+...+.-...++|-||. |+++.+..
T Consensus 10 L~~~I~~~FGS~d~fk~~f~~~a~~~~GsGW~wLv~~~~~~~l~ 53 (113)
T d1ma1a2 10 LAEYIEKDFGSFERFRKEFSQAAISAEGSGWAVLTYCQRTDRLF 53 (113)
T ss_dssp HHHHHHHHHSSHHHHHHHHHHHHHTCSSSEEEEEEEETTTTEEE
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhccccceeEEEEEecCCCcee
Confidence 44444444345678888887777777888999996 67665543
No 9
>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=12.52 E-value=24 Score=25.36 Aligned_cols=57 Identities=14% Similarity=0.253 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhhhceeeccC--CCCc-cchhhhhhhhchhHHHHHHHHHHHHHhhcccc
Q psy9888 62 RLVLAFISMCTAVGAFYWLTD--PDTS-NCSFCQSLWNHPFFAISSAILIILFLLGIHKR 118 (156)
Q Consensus 62 RiiL~~~s~ct~~~a~~wl~D--p~t~-~~~~~~sL~~H~~Ft~s~~~li~Lf~~Gihkr 118 (156)
|+-|++..+.+.+--..=+.| |.|+ .+|..+-...--++.+++.++.--++..+|+|
T Consensus 33 Rv~l~it~lLs~~~~~~~v~~~lP~tS~~vPli~~~~~~~~~~v~~sl~~t~iVl~~~~~ 92 (260)
T d1oede_ 33 KCTLSISVLLAQTIFLFLIAQKVPETSLNVPLIGKYLIFVMFVSMLIVMNCVIVLNVSLR 92 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEeehhHHHHHHHHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHHHHheeeEEcc
Confidence 566666666655544444455 6765 67776543222222222223333335566655
No 10
>d1pd0a5 g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=12.36 E-value=13 Score=23.79 Aligned_cols=18 Identities=22% Similarity=0.497 Sum_probs=14.9
Q ss_pred HHHHhhcccccccccCCcc
Q psy9888 127 SRARLVLTDFNMSCDDSGK 145 (156)
Q Consensus 127 ~r~R~vL~~fnmscd~~Gk 145 (156)
+|||..+++| |..|++||
T Consensus 17 ~~C~ayiNP~-~~~~~~g~ 34 (85)
T d1pd0a5 17 RRCRSYMNPF-VTFIEQGR 34 (85)
T ss_dssp SSSCCBCCTT-CEEETTTT
T ss_pred cCCcCEECCc-eEEeCCCC
Confidence 5788999999 77888876
Done!