RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy9888
         (156 letters)



>gnl|CDD|150442 pfam09771, Tmemb_18A, Transmembrane protein 188.  The function of
           this family of transmembrane proteins has not, as yet,
           been determined.
          Length = 126

 Score =  178 bits (453), Expect = 8e-59
 Identities = 78/119 (65%), Positives = 94/119 (78%)

Query: 35  SAILNLKAFERRLTEVIACSGPSTKRWRLVLAFISMCTAVGAFYWLTDPDTSNCSFCQSL 94
           SA  +LKAFERRLTEVI+  GP+T RWR+VL+ +S+CT VGA+YWL DP+T    F  SL
Sbjct: 4   SACEDLKAFERRLTEVISYLGPTTFRWRIVLSVMSVCTFVGAWYWLADPETFQVPFIDSL 63

Query: 95  WNHPFFAISSAILIILFLLGIHKRVIAPSIITSRARLVLTDFNMSCDDSGKLILKPRPS 153
           WNHP F  S+  L++LF+ GIHKRV+APSII SR R VL +FNMSCDD+GKLILKPRP 
Sbjct: 64  WNHPDFTFSTLTLLLLFVFGIHKRVVAPSIIASRCRTVLAEFNMSCDDTGKLILKPRPR 122



 Score = 54.8 bits (132), Expect = 2e-10
 Identities = 32/72 (44%), Positives = 38/72 (52%), Gaps = 5/72 (6%)

Query: 1   MCTAVGAFYWLTDPDTSNCSFCQSLWNHPFFAISSAILNLKAFERRLTEVIACSGPS--T 58
           +CT VGA+YWL DP+T    F  SLWNHP F  S+  L L         V+A   PS   
Sbjct: 39  VCTFVGAWYWLADPETFQVPFIDSLWNHPDFTFSTLTLLLLFVFGIHKRVVA---PSIIA 95

Query: 59  KRWRLVLAFISM 70
            R R VLA  +M
Sbjct: 96  SRCRTVLAEFNM 107


>gnl|CDD|206639 cd00066, G-alpha, Alpha subunit of G proteins (guanine nucleotide
           binding).  The alpha subunit of G proteins contains the
           guanine nucleotide binding site. The heterotrimeric
           GNP-binding proteins are signal transducers that
           communicate signals from many hormones,
           neurotransmitters, chemokines, and autocrine and
           paracrine factors. Extracellular signals are received by
           receptors, which activate the G proteins, which in turn
           route the signals to several distinct intracellular
           signaling pathways. The alpha subunit of G proteins is a
           weak GTPase. In the resting state, heterotrimeric G
           proteins are associated at the cytosolic face of the
           plasma membrane and the alpha subunit binds to GDP. Upon
           activation by a receptor GDP is replaced with GTP, and
           the G-alpha/GTP complex dissociates from the beta and
           gamma subunits. This results in activation of downstream
           signaling pathways, such as cAMP synthesis by adenylyl
           cyclase, which is terminated when GTP is hydrolized and
           the heterotrimers reconstitute.
          Length = 315

 Score = 29.0 bits (66), Expect = 0.80
 Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 3/20 (15%)

Query: 93  SLWNHPFFAISSAILIILFL 112
           S+ N  +FA +S   IILFL
Sbjct: 219 SICNSRWFANTS---IILFL 235


>gnl|CDD|227760 COG5473, COG5473, Predicted integral membrane protein [Function
           unknown].
          Length = 290

 Score = 28.5 bits (64), Expect = 1.2
 Identities = 14/58 (24%), Positives = 19/58 (32%), Gaps = 5/58 (8%)

Query: 63  LVLAFISMCTAVGAFYWLTDPDTS-----NCSFCQSLWNHPFFAISSAILIILFLLGI 115
           +V A   + T V A   L D D         S    L N     +   I+    L+G 
Sbjct: 197 VVFALFFLATTVFAVPLLLDRDVGAISAVETSVRAVLANPGPMLLWGLIVAAALLIGS 254


>gnl|CDD|131814 TIGR02767, TraG-Ti, Ti-type conjugative transfer system protein
           TraG.  This protein is found in the Agrobacterium
           tumefaciens Ti plasmid tra region responsible for
           conjugative transfer of the entire plasmid among
           Agrobacterium strains. The protein is distantly related
           to the F-type conjugation system TraG protein. Both of
           these systems are examples of type IV secretion systems.
          Length = 623

 Score = 28.3 bits (63), Expect = 2.0
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 4/47 (8%)

Query: 30  FFAISSAILNLKAFERRLTEVIACSGPSTKRWRLVLAFISMCTAVGA 76
            F + + I  L+    RL   +A S P+   W+  LAF    T +GA
Sbjct: 76  GFGVVATIATLREV-IRLNPYVASSVPT---WQSALAFADPVTVIGA 118


>gnl|CDD|225747 COG3206, GumC, Uncharacterized protein involved in
          exopolysaccharide biosynthesis [Cell envelope
          biogenesis, outer membrane].
          Length = 458

 Score = 27.8 bits (62), Expect = 2.9
 Identities = 7/39 (17%), Positives = 13/39 (33%), Gaps = 6/39 (15%)

Query: 45 RRLTEVIACSGPSTKRWRLVLAFISMCTAVGAFYWLTDP 83
            L  V+       +R  L+L   ++   +   Y    P
Sbjct: 15 GDLLGVLR------RRRWLILLVAALVVGLAVLYAFLAP 47


>gnl|CDD|215057 PLN00105, PLN00105, malate/L-lactate dehydrogenase; Provisional.
          Length = 330

 Score = 27.1 bits (60), Expect = 3.9
 Identities = 10/27 (37%), Positives = 12/27 (44%)

Query: 26  WNHPFFAISSAILNLKAFERRLTEVIA 52
           W H F AI   +L    FE+   EV  
Sbjct: 250 WGHLFVAIDPKLLGQDDFEKNAAEVTQ 276


>gnl|CDD|234937 PRK01294, PRK01294, lipase chaperone; Provisional.
          Length = 336

 Score = 26.9 bits (60), Expect = 4.3
 Identities = 7/30 (23%), Positives = 11/30 (36%)

Query: 57 STKRWRLVLAFISMCTAVGAFYWLTDPDTS 86
            K+  L L  + +      + W  DP  S
Sbjct: 1  MKKKRALSLGLVGLVAIGAVWLWPGDPANS 30


>gnl|CDD|225115 COG2205, KdpD, Osmosensitive K+ channel histidine kinase [Signal
           transduction mechanisms].
          Length = 890

 Score = 27.3 bits (61), Expect = 4.7
 Identities = 15/88 (17%), Positives = 28/88 (31%), Gaps = 21/88 (23%)

Query: 49  EVIACSGPSTKRWRLVLA-------FISMCTAVGAFYWLTDPDTSNCSFCQSLWNHPFFA 101
            ++A   P  KR   V         +                    C+   ++       
Sbjct: 370 HIVALDAPPDKRPNAVKWRPKIQGSWSRDYLVAILI----------CALATAIAIQLDKF 419

Query: 102 ISSAILIILFLLGIHKRVIAPSIITSRA 129
              A +++LFLLG    V+  +++T R 
Sbjct: 420 FDLANIVMLFLLG----VLVVAVLTGRW 443


>gnl|CDD|234388 TIGR03902, rhom_GG_sort, rhomboid family GlyGly-CTERM serine
          protease.  This model describes a rhomboid-like
          intramembrane serine protease. Its species distribution
          closely matches model TIGR03501, GlyGly-CTERM, which
          describes a protein targeting domain analogous to LPXTG
          and PEP-CTERM. In a number of species (Ralstonia
          eutropha ,R. metallidurans, R. solanacearum,
          Marinobacter aquaeolei, etc) with just one GlyGly-CTERM
          protein (i.e., a dedicated system), the rhombosortase
          and GlyGly-CTERM genes are adjacent.
          Length = 154

 Score = 26.4 bits (59), Expect = 5.3
 Identities = 5/31 (16%), Positives = 10/31 (32%)

Query: 55 GPSTKRWRLVLAFISMCTAVGAFYWLTDPDT 85
              +  RL+L  + +   +     L  P  
Sbjct: 47 ERHLRARRLLLLLLLLSLLISLGLLLFLPSL 77


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.328    0.137    0.456 

Gapped
Lambda     K      H
   0.267   0.0791    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,920,991
Number of extensions: 699573
Number of successful extensions: 1184
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1184
Number of HSP's successfully gapped: 53
Length of query: 156
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 67
Effective length of database: 6,990,096
Effective search space: 468336432
Effective search space used: 468336432
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (24.8 bits)