RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy9888
         (156 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 37.3 bits (86), Expect = 0.001
 Identities = 22/140 (15%), Positives = 37/140 (26%), Gaps = 57/140 (40%)

Query: 10  WLTDPDT-------SNCSFCQSLWNHPF--------FAISSAILNL--KAFERRLTEVIA 52
           WL +P          +     S    P         + +++ +L          L     
Sbjct: 218 WLENPSNTPDKDYLLSIPI--SC---PLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATG 272

Query: 53  CSGPSTKRWRLVLA-FISMCTAVGAFYWLTDPDTSNCSFCQSLWNHPFFAISSAILIILF 111
            S        LV A  I+              D+         W   FF      + +LF
Sbjct: 273 HSQG------LVTAVAIAET------------DS---------WES-FFVSVRKAITVLF 304

Query: 112 LLGIH------KRVIAPSII 125
            +G+          + PSI+
Sbjct: 305 FIGVRCYEAYPNTSLPPSIL 324


>3tdg_A DSBG, putative uncharacterized protein; thioredoxin fold,
           reductase, oxidoreductase; HET: P6G; 2.10A {Helicobacter
           pylori}
          Length = 273

 Score = 27.3 bits (59), Expect = 2.0
 Identities = 7/41 (17%), Positives = 13/41 (31%), Gaps = 4/41 (9%)

Query: 77  FYWLTDPDTSNCSFCQSLWNHPFFAISSAILIILFLLGIHK 117
            Y ++DP    C  CQ               + + ++G   
Sbjct: 151 LYIVSDP---MCPHCQKELTK-LRDHLKENTVRMVVVGWLG 187


>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A
          {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
          Length = 752

 Score = 27.0 bits (58), Expect = 3.5
 Identities = 7/18 (38%), Positives = 8/18 (44%)

Query: 2  CTAVGAFYWLTDPDTSNC 19
          C   G  +W  DPD   C
Sbjct: 20 CXVCGXPFWTLDPDRETC 37



 Score = 27.0 bits (58), Expect = 3.5
 Identities = 7/18 (38%), Positives = 8/18 (44%)

Query: 71 CTAVGAFYWLTDPDTSNC 88
          C   G  +W  DPD   C
Sbjct: 20 CXVCGXPFWTLDPDRETC 37


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 26.5 bits (57), Expect = 3.6
 Identities = 5/27 (18%), Positives = 9/27 (33%), Gaps = 11/27 (40%)

Query: 11 LTDPDTSNCSFCQSLWNHPFFAISSAI 37
          L   D++           P  AI + +
Sbjct: 31 LYADDSA-----------PALAIKATM 46



 Score = 26.5 bits (57), Expect = 3.6
 Identities = 5/27 (18%), Positives = 9/27 (33%), Gaps = 11/27 (40%)

Query: 80  LTDPDTSNCSFCQSLWNHPFFAISSAI 106
           L   D++           P  AI + +
Sbjct: 31  LYADDSA-----------PALAIKATM 46


>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family
           transcriptional regulator, structural genom 2, RHA08332,
           MCSG; 2.20A {Rhodococcus SP}
          Length = 207

 Score = 26.6 bits (59), Expect = 3.8
 Identities = 8/48 (16%), Positives = 14/48 (29%), Gaps = 3/48 (6%)

Query: 42  AFERRLTEVIA---CSGPSTKRWRLVLAFISMCTAVGAFYWLTDPDTS 86
            +   + E +A    + P+    R V   +          WL D    
Sbjct: 134 GWRNVIAEYVASRLGTSPTDHVPRTVGYLLLGVAMSAYEQWLDDDSLE 181


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.328    0.137    0.456 

Gapped
Lambda     K      H
   0.267   0.0466    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,435,077
Number of extensions: 128234
Number of successful extensions: 419
Number of sequences better than 10.0: 1
Number of HSP's gapped: 417
Number of HSP's successfully gapped: 21
Length of query: 156
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 70
Effective length of database: 4,300,587
Effective search space: 301041090
Effective search space used: 301041090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (24.8 bits)