RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9888
         (156 letters)



>d2zjrp1 d.55.1.1 (P:8-134) Ribosomal protein L22 {Deinococcus
           radiodurans [TaxId: 1299]}
          Length = 127

 Score = 27.1 bits (60), Expect = 0.57
 Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 7/51 (13%)

Query: 19  CSFCQSLWNHPFF-----AISSAILNLKAFERRL--TEVIACSGPSTKRWR 62
             F     + P       A ++A+ N +  E RL   E    +GP+ KR  
Sbjct: 50  LRFIPRSASEPVAKVLNSAKANALHNDEMLEDRLFVKEAYVDAGPTLKRLI 100


>d1x0ha1 d.332.1.1 (A:8-107) Ras GTPase-activating-like protein
          IQGAP1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 100

 Score = 25.0 bits (55), Expect = 2.0
 Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 3/36 (8%)

Query: 45 RRLTE---VIACSGPSTKRWRLVLAFISMCTAVGAF 77
           RL E   ++        +++ V+  IS    VG F
Sbjct: 8  ARLHEKGVLLEIEDLQVNQFKNVIFEISPTEEVGDF 43


>d2gp4a2 d.334.1.1 (A:1-418) 6-phosphogluconate dehydratase EDD
           {Shewanella oneidensis [TaxId: 70863]}
          Length = 418

 Score = 25.4 bits (55), Expect = 3.1
 Identities = 8/46 (17%), Positives = 18/46 (39%), Gaps = 4/46 (8%)

Query: 37  ILNLKAFERRLTEVIACSGPSTKRWRLVLAFISMCTAVGAFYWLTD 82
           ++N K+    +  ++A  G +     L +  ++   A G      D
Sbjct: 281 VVNEKSIVNGIVALLATGGST----NLTMHIVAAARAAGIIVNWDD 322


>d2gycq1 d.55.1.1 (Q:5-110) Ribosomal protein L22 {Escherichia
          coli [TaxId: 562]}
          Length = 106

 Score = 23.6 bits (51), Expect = 6.9
 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 2/33 (6%)

Query: 32 AISSAILNLKAFERRL--TEVIACSGPSTKRWR 62
          AI++A  N  A    L  T++    GPS KR  
Sbjct: 50 AIANAEHNDGADIDDLKVTKIFVDEGPSMKRIM 82


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.137    0.456 

Gapped
Lambda     K      H
   0.267   0.0648    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 609,403
Number of extensions: 25855
Number of successful extensions: 82
Number of sequences better than 10.0: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 10
Length of query: 156
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 78
Effective length of database: 1,336,656
Effective search space: 104259168
Effective search space used: 104259168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 49 (22.8 bits)