BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy9896
         (145 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1G7S|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
           Complexed With Gdp
 pdb|1G7T|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
           Complexed With Gdpnp
          Length = 594

 Score = 71.2 bits (173), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 71/118 (60%), Gaps = 3/118 (2%)

Query: 11  CQTFLKKRLMFKNELQA--TVLEVKAIPGLGTTIDTILVNGTLYEGDTVVLAGTDGPIVT 68
            Q +L+++L  + +  A  T+LEVK   GLG TID ++ +G L + DT+ +  +   I T
Sbjct: 216 AQQYLREQLKIEEDSPARGTILEVKEETGLGMTIDAVIYDGILRKDDTIAMMTSKDVIST 275

Query: 69  QIRSLLMPQPMQELR-VKNAYVEYKKIKGTQGVKIAAKDLEKTIAGLNLRVAKDQDEI 125
           +IRSLL P+P++E+R  +  + +  ++    G+KI A  ++  +AG  LRV  D +++
Sbjct: 276 RIRSLLKPRPLEEMRESRKKFQKVDEVVAAAGIKIVAPGIDDVMAGSPLRVVTDPEKV 333


>pdb|1G7R|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
          Length = 594

 Score = 68.2 bits (165), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 68/118 (57%), Gaps = 3/118 (2%)

Query: 11  CQTFLKKRLMFKNELQA--TVLEVKAIPGLGTTIDTILVNGTLYEGDTVVLAGTDGPIVT 68
            Q +L+++L  + +  A  T+LEVK   GLG TID ++ +G L + DT+    +   I T
Sbjct: 216 AQQYLREQLKIEEDSPARGTILEVKEETGLGXTIDAVIYDGILRKDDTIAXXTSKDVIST 275

Query: 69  QIRSLLMPQPMQELR-VKNAYVEYKKIKGTQGVKIAAKDLEKTIAGLNLRVAKDQDEI 125
           +IRSLL P+P++E R  +  + +  ++    G+KI A  ++   AG  LRV  D +++
Sbjct: 276 RIRSLLKPRPLEEXRESRKKFQKVDEVVAAAGIKIVAPGIDDVXAGSPLRVVTDPEKV 333


>pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase
 pdb|2VZ8|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase
 pdb|2VZ9|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase In
            Complex With Nadp
 pdb|2VZ9|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase In
            Complex With Nadp
          Length = 2512

 Score = 27.3 bits (59), Expect = 3.0,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 24/47 (51%)

Query: 36   PGLGTTIDTILVNGTLYEGDTVVLAGTDGPIVTQIRSLLMPQPMQEL 82
            P L   +DT L N    +   V +   DG + ++I +LL  QP+ +L
Sbjct: 1224 PALKACVDTALENMASPKMKVVEVLAGDGQLYSRIPALLNTQPVMDL 1270


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.134    0.362 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,645,706
Number of Sequences: 62578
Number of extensions: 135564
Number of successful extensions: 555
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 545
Number of HSP's gapped (non-prelim): 18
length of query: 145
length of database: 14,973,337
effective HSP length: 89
effective length of query: 56
effective length of database: 9,403,895
effective search space: 526618120
effective search space used: 526618120
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)