Query psy9896
Match_columns 145
No_of_seqs 101 out of 309
Neff 4.4
Searched_HMMs 29240
Date Fri Aug 16 22:23:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9896.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9896hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1g7s_A Translation initiation 99.8 1.3E-20 4.5E-25 169.3 13.0 131 6-139 211-344 (594)
2 1zo1_I IF2, translation initia 99.2 2.7E-11 9.3E-16 107.4 8.1 104 24-143 177-294 (501)
3 3izy_P Translation initiation 99.0 2.3E-11 7.9E-16 108.6 -2.0 85 24-124 178-263 (537)
4 2c78_A Elongation factor TU-A; 97.7 0.00026 8.9E-09 59.4 10.3 82 25-117 221-305 (405)
5 1d2e_A Elongation factor TU (E 97.6 0.00022 7.6E-09 59.9 9.2 82 25-117 204-287 (397)
6 3avx_A Elongation factor TS, e 97.1 0.0018 6.2E-08 63.5 9.4 82 25-117 495-578 (1289)
7 2dy1_A Elongation factor G; tr 97.0 0.0013 4.6E-08 59.3 7.5 83 23-118 282-364 (665)
8 1jny_A EF-1-alpha, elongation 97.0 0.0035 1.2E-07 53.3 9.2 80 25-117 233-314 (435)
9 2elf_A Protein translation elo 96.7 0.011 3.9E-07 49.6 9.8 80 25-117 193-274 (370)
10 1r5b_A Eukaryotic peptide chai 96.6 0.0069 2.4E-07 52.2 8.5 79 24-117 273-353 (467)
11 1dar_A EF-G, elongation factor 96.5 0.017 5.9E-07 52.4 10.8 84 24-119 308-392 (691)
12 1s0u_A EIF-2-gamma, translatio 96.4 0.0069 2.3E-07 50.9 7.0 69 25-104 207-293 (408)
13 3sjy_A Translation initiation 96.2 0.012 4.1E-07 49.3 7.3 69 24-103 200-286 (403)
14 1kk1_A EIF2gamma; initiation o 96.1 0.021 7.1E-07 47.9 8.2 69 25-104 209-295 (410)
15 3mca_A HBS1, elongation factor 96.1 0.039 1.3E-06 49.3 10.3 78 25-116 405-485 (592)
16 2ywe_A GTP-binding protein LEP 95.9 0.079 2.7E-06 47.8 11.7 48 25-74 193-240 (600)
17 3p26_A Elongation factor 1 alp 95.7 0.048 1.6E-06 46.9 9.2 89 24-117 266-359 (483)
18 1f60_A Elongation factor EEF1A 95.7 0.053 1.8E-06 46.5 9.2 80 25-117 244-325 (458)
19 3izq_1 HBS1P, elongation facto 95.2 0.072 2.5E-06 47.8 8.6 87 25-116 401-492 (611)
20 3j2k_7 ERF3, eukaryotic polype 95.1 0.088 3E-06 44.9 8.7 75 25-114 245-321 (439)
21 2rdo_7 EF-G, elongation factor 94.8 0.17 5.9E-06 46.0 10.1 82 25-117 317-398 (704)
22 1zun_B Sulfate adenylate trans 94.6 0.15 5.1E-06 43.1 8.6 82 25-119 244-325 (434)
23 3cb4_D GTP-binding protein LEP 94.4 0.32 1.1E-05 43.7 10.9 40 25-64 191-230 (599)
24 1wb1_A Translation elongation 94.4 0.014 4.9E-07 50.5 2.0 79 25-116 200-280 (482)
25 1g7s_A Translation initiation 94.3 0.2 6.7E-06 45.0 9.0 94 25-132 464-562 (594)
26 3e1y_E Eukaryotic peptide chai 93.9 0.16 5.5E-06 39.4 6.8 66 37-115 17-84 (204)
27 1zo1_I IF2, translation initia 92.4 1.5 5.2E-05 38.6 11.6 102 8-121 388-495 (501)
28 4he6_A Peptidase family U32; u 91.8 1.3 4.4E-05 29.9 8.2 77 25-117 8-86 (89)
29 1xe1_A Hypothetical protein PF 90.7 0.51 1.8E-05 34.8 5.6 78 25-119 35-114 (116)
30 2xex_A Elongation factor G; GT 89.7 2.3 7.9E-05 38.4 10.2 83 25-118 309-391 (693)
31 2h5e_A Peptide chain release f 89.1 1.5 5E-05 38.6 8.3 82 25-117 296-380 (529)
32 3tr5_A RF-3, peptide chain rel 88.5 1.5 5.3E-05 38.5 8.0 81 25-116 295-378 (528)
33 1d1n_A Initiation factor 2; be 87.0 3.7 0.00013 29.4 7.9 83 25-121 7-93 (99)
34 3izy_P Translation initiation 81.2 19 0.00065 31.9 11.6 97 11-119 430-536 (537)
35 2crv_A IF-2MT, translation ini 79.8 12 0.0004 27.6 8.2 83 25-121 11-101 (120)
36 3vqt_A RF-3, peptide chain rel 79.4 6.9 0.00024 34.4 8.1 82 25-117 313-397 (548)
37 4fn5_A EF-G 1, elongation fact 72.3 6.6 0.00023 35.4 6.1 82 25-117 320-401 (709)
38 2k5n_A Putative cold-shock pro 65.0 7.9 0.00027 25.7 3.9 52 25-76 3-68 (74)
39 1n0u_A EF-2, elongation factor 64.5 41 0.0014 31.1 9.8 78 25-111 378-463 (842)
40 1wi4_A Synip, syntaxin binding 51.4 19 0.00066 24.4 4.1 34 26-59 15-68 (109)
41 4dov_A ORC1, origin recognitio 49.5 14 0.00048 28.6 3.4 26 50-75 38-65 (163)
42 3gge_A PDZ domain-containing p 46.6 3.9 0.00014 28.6 -0.1 27 33-59 13-55 (95)
43 2ejy_A 55 kDa erythrocyte memb 46.2 31 0.0011 23.2 4.5 12 49-60 53-64 (97)
44 3i2z_B RNA chaperone, negative 46.0 44 0.0015 21.6 5.0 47 25-71 6-69 (71)
45 2byg_A Channel associated prot 44.9 28 0.00094 23.9 4.1 28 33-60 32-82 (117)
46 3j25_A Tetracycline resistance 42.7 2.3 7.7E-05 38.1 -2.3 39 25-63 248-286 (638)
47 2kcm_A Cold shock domain famil 42.1 38 0.0013 22.4 4.3 49 26-74 2-67 (74)
48 3jxo_A TRKA-N domain protein; 41.8 64 0.0022 20.3 6.9 28 105-132 55-83 (86)
49 3axa_A Afadin, nectin-3, prote 39.9 52 0.0018 21.6 4.8 35 26-60 11-66 (106)
50 3zv0_C H/ACA ribonucleoprotein 39.3 24 0.00082 27.8 3.4 36 45-83 100-135 (195)
51 1v62_A KIAA1719 protein; struc 39.0 23 0.0008 24.1 3.0 12 49-60 59-70 (117)
52 1ihj_A INAD; intermolecular di 38.5 55 0.0019 21.0 4.7 12 49-60 54-65 (98)
53 1v6b_A Harmonin isoform A1; st 37.9 44 0.0015 22.8 4.3 35 26-60 18-71 (118)
54 2db5_A INAD-like protein; PDZ 36.8 44 0.0015 22.8 4.2 12 49-60 71-82 (128)
55 1use_A VAsp, vasodilator-stimu 35.7 24 0.00081 22.0 2.2 22 121-142 5-26 (45)
56 2d92_A INAD-like protein; PDZ 35.2 57 0.002 21.6 4.4 34 26-60 17-72 (108)
57 1g6p_A Cold shock protein TMCS 35.0 69 0.0024 20.3 4.6 46 26-71 2-63 (66)
58 1ueq_A Membrane associated gua 34.8 56 0.0019 22.3 4.4 12 49-60 61-72 (123)
59 3iz5_B 60S ribosomal protein L 34.1 57 0.0019 26.9 4.9 37 25-61 41-92 (261)
60 2la8_A Inactivation-NO-after-p 32.6 55 0.0019 22.0 4.0 14 49-64 42-55 (106)
61 2o2t_A Multiple PDZ domain pro 31.6 55 0.0019 21.8 3.9 12 49-60 66-77 (117)
62 3egg_C Spinophilin; PP1, serin 31.2 1.2E+02 0.004 22.4 6.0 12 49-60 128-139 (170)
63 2yt7_A Amyloid beta A4 precurs 30.3 88 0.003 20.4 4.7 11 49-59 54-64 (101)
64 1xne_A Hypothetical protein PF 30.2 34 0.0012 24.6 2.7 32 41-75 22-56 (113)
65 3mxn_B RECQ-mediated genome in 28.8 46 0.0016 25.4 3.3 29 25-60 63-108 (150)
66 1w4s_A Polybromo, polybromo 1 28.6 38 0.0013 25.2 2.8 31 46-76 22-55 (174)
67 3au7_A TIAS, putative uncharac 28.4 67 0.0023 27.8 4.7 38 25-62 289-345 (402)
68 3a0j_A Cold shock protein; OB- 28.3 1.2E+02 0.0041 19.5 5.6 47 26-72 3-67 (73)
69 3va4_A Mediator of DNA damage 28.3 53 0.0018 23.5 3.4 25 51-79 108-132 (132)
70 3sgr_A Tandem repeat of amyloi 28.2 25 0.00087 19.1 1.3 16 42-57 7-23 (25)
71 3aqq_A Calcium-regulated heat 27.7 97 0.0033 23.1 5.0 49 25-73 63-129 (147)
72 2fe5_A Presynaptic protein SAP 27.4 54 0.0019 20.8 3.1 12 49-60 50-61 (94)
73 2z0t_A Putative uncharacterize 26.9 34 0.0011 24.5 2.1 52 40-105 20-74 (109)
74 2dc2_A GOPC, golgi associated 26.8 56 0.0019 21.6 3.2 12 49-60 52-63 (103)
75 1p3h_A 10 kDa chaperonin; beta 26.6 38 0.0013 23.9 2.3 36 25-71 38-79 (99)
76 1q3o_A Shank1; PDZ, GKAP, pept 26.1 74 0.0025 21.0 3.7 10 51-60 63-72 (109)
77 1dgw_Y Canavalin; duplicated s 25.9 59 0.002 22.5 3.2 17 47-63 6-22 (93)
78 3cam_A Cold-shock domain famil 25.6 57 0.0019 20.8 2.9 17 26-42 3-19 (67)
79 3mlq_E Transcription-repair co 25.2 15 0.00051 24.2 0.0 24 49-75 1-24 (71)
80 3nx6_A 10KDA chaperonin; bacte 24.8 43 0.0015 23.4 2.3 36 25-71 36-76 (95)
81 1vmf_A Hypothetical protein; s 24.2 62 0.0021 24.3 3.3 29 38-66 103-133 (145)
82 2vl6_A SSO MCM N-TER, minichro 24.2 44 0.0015 26.3 2.6 24 40-63 211-237 (268)
83 1ltl_A DNA replication initiat 24.1 49 0.0017 26.4 2.8 25 40-64 198-225 (279)
84 1c9o_A CSPB, cold-shock protei 24.0 1.4E+02 0.0048 18.7 5.6 46 26-71 3-64 (66)
85 2daz_A INAD-like protein; PDZ 23.2 94 0.0032 21.0 3.9 12 49-60 68-79 (124)
86 2cu5_A Conserved hypothetical 23.0 1.3E+02 0.0044 22.0 4.7 30 38-67 90-121 (129)
87 4e34_A Golgi-associated PDZ an 22.9 90 0.0031 19.5 3.5 12 49-60 45-56 (87)
88 2i04_A Membrane-associated gua 22.6 1.4E+02 0.0048 18.4 4.4 12 49-60 42-53 (85)
89 1x6d_A Interleukin-16; PDZ dom 21.8 43 0.0015 22.5 1.9 35 25-59 16-69 (119)
90 2kaf_A Non-structural protein 21.8 41 0.0014 22.2 1.6 21 50-70 32-52 (67)
91 2gzv_A PRKCA-binding protein; 21.4 1.2E+02 0.004 20.5 4.1 12 49-60 67-78 (114)
92 2zwn_A Two-domain type laccase 21.4 97 0.0033 25.0 4.2 22 38-59 19-47 (339)
93 1vct_A Hypothetical protein PH 21.3 1E+02 0.0036 23.1 4.1 58 74-132 134-193 (205)
94 1q7h_A Conserved hypothetical 20.5 1.2E+02 0.0043 21.6 4.2 36 45-83 95-130 (153)
95 1oru_A YUAD protein; structura 20.2 52 0.0018 25.0 2.2 19 44-62 166-184 (195)
No 1
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.84 E-value=1.3e-20 Score=169.26 Aligned_cols=131 Identities=31% Similarity=0.584 Sum_probs=114.1
Q ss_pred hHHHHHHHHHHhhcCcc--CcceEEEEEEeeeCCcceEEEEEEEccEEcCCCEEEEccCCCceeeeeeeccCCCcchhhc
Q psy9896 6 REIQYCQTFLKKRLMFK--NELQATVLEVKAIPGLGTTIDTILVNGTLYEGDTVVLAGTDGPIVTQIRSLLMPQPMQELR 83 (145)
Q Consensus 6 ~l~gl~Q~~m~~~L~~~--~~~~gtVLEvK~~kGlG~tidvIl~~G~L~~GD~Iv~~~~~Gpi~tkIRaLl~p~Pl~E~R 83 (145)
.|..+++.++..++.++ ..+.|+|+|++.++|.|+++++.+++|+|++||+|++++.+|+..+|||+|++|+|++|||
T Consensus 211 ~I~~~~~~~~~~~l~~~~~~p~~~~V~~~~~d~g~G~v~~~rV~~G~Lk~Gd~v~~~~~~~~~~~rV~~i~~~~~~~elr 290 (594)
T 1g7s_A 211 MLMGLAQQYLREQLKIEEDSPARGTILEVKEETGLGMTIDAVIYDGILRKDDTIAMMTSKDVISTRIRSLLKPRPLEEMR 290 (594)
T ss_dssp HHHHHHHHHCSGGGEECTTSBCEEEEEEEEEETTEEEEEEEEEEESEEETTCEEEEEBSSSEEEEECCEEEEECCCC---
T ss_pred HHHhhccccchhhhccccCCCceeEEEEEEEeCCcEEEEEEEEeeCEEeeCCEEEECCCCCceeEEEeEEEeccccchhh
Confidence 45667788887677663 3489999999999999999999999999999999999999999999999999999999999
Q ss_pred -ccccceeeceeecCcCeEEecCCCCcccCCCeEEEecCcccHHHHHHHHHHHHHHH
Q psy9896 84 -VKNAYVEYKKIKGTQGVKIAAKDLEKTIAGLNLRVAKDQDEIDDLCDEVARELKSA 139 (145)
Q Consensus 84 -~k~~~~~~~~v~aa~gVkI~a~~Le~~~AGs~l~vv~~~~e~e~~~~ev~~e~~~~ 139 (145)
..++|.+++++.||+|+++++++|+++.+|++|.+++++ +++++++++|++++
T Consensus 291 ~~~~~~~~v~ea~~~aG~~v~~~~l~~~~~Gd~l~~~~~~---~~~~~~~~~~~~~~ 344 (594)
T 1g7s_A 291 ESRKKFQKVDEVVAAAGIKIVAPGIDDVMAGSPLRVVTDP---EKVREEILSEIEDI 344 (594)
T ss_dssp -CCCSEEECSEEESSEEEEEECSSCTTBCTTCEEEECSSH---HHHHHHHHHHHHTT
T ss_pred hccCCceEccEEcCCCCcEEEEcccCCCCCCCEEEecCCH---HHHHHHHHHHHHhc
Confidence 678999999999999999999999999999999999866 45677777777643
No 2
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.20 E-value=2.7e-11 Score=107.37 Aligned_cols=104 Identities=20% Similarity=0.248 Sum_probs=84.5
Q ss_pred cceEEEEEEeeeCCcceEEEEEEEccEEcCCCEEEEccCCCceeeeeeeccCCCcchhhcccccceeeceeecCcCeEEe
Q psy9896 24 ELQATVLEVKAIPGLGTTIDTILVNGTLYEGDTVVLAGTDGPIVTQIRSLLMPQPMQELRVKNAYVEYKKIKGTQGVKIA 103 (145)
Q Consensus 24 ~~~gtVLEvK~~kGlG~tidvIl~~G~L~~GD~Iv~~~~~Gpi~tkIRaLl~p~Pl~E~R~k~~~~~~~~v~aa~gVkI~ 103 (145)
.++++|+|++.++|.|+++++.+++|+|++||.|++++. +++||+|+++ ...+++++.|+.+|.|.
T Consensus 177 ~~~~~V~e~~~d~g~G~v~~~~V~~Gtlk~Gd~v~~g~~----~~kVr~i~~~----------~g~~v~~a~~g~~V~i~ 242 (501)
T 1zo1_I 177 MASGAVIESFLDKGRGPVATVLVREGTLHKGDIVLCGFE----YGRVRAMRNE----------LGQEVLEAGPSIPVEIL 242 (501)
T ss_dssp BCEEEEEEEEECSSSSEEEEEEEEESBCCTTCEEEEEBS----SCEEEEECCT----------TTTSEEEECCSSCSSSE
T ss_pred ccccceEEEEEeCCcEEEEEEEEEeeEEecCCEEEEccc----eeEEEEEEec----------CCCcCcEeccCCcEEEe
Confidence 379999999999999999999999999999999998654 5699999976 35789999999999999
Q ss_pred cCCCCcc-cCCCeEEEecCcccHH-------------HHHHHHHHHHHHHhhhc
Q psy9896 104 AKDLEKT-IAGLNLRVAKDQDEID-------------DLCDEVARELKSALSTI 143 (145)
Q Consensus 104 a~~Le~~-~AGs~l~vv~~~~e~e-------------~~~~ev~~e~~~~~~~i 143 (145)
| |+++ .||+.++++.++++++ +++++.+.+++++++++
T Consensus 243 g--l~~~~~~Gd~~~~~~~~~~a~~~~~~r~~~~~~~~~~~~~~~~l~~~~~~~ 294 (501)
T 1zo1_I 243 G--LSGVPAAGDEVTVVRDEKKAREVALYRQGKFREVKLARQQKSKLENMFANM 294 (501)
T ss_dssp E--ECSCCCTTEEEEEECSSCTTBCSSCBTTCCCCSHHHHHHHHHHHSSTTTSC
T ss_pred C--CCCCCCCCCEEEecCCHHHHHHHHHHHHHHHHHHHHhhhhhhcHHHHHhhh
Confidence 5 6675 9999999998876532 34444455566555444
No 3
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=98.98 E-value=2.3e-11 Score=108.62 Aligned_cols=85 Identities=20% Similarity=0.220 Sum_probs=75.1
Q ss_pred cceEEEEEEeeeCCcceEEEEEEEccEEcCCCEEEEccCCCceeeeeeeccCCCcchhhcccccceeeceeecCcCeEEe
Q psy9896 24 ELQATVLEVKAIPGLGTTIDTILVNGTLYEGDTVVLAGTDGPIVTQIRSLLMPQPMQELRVKNAYVEYKKIKGTQGVKIA 103 (145)
Q Consensus 24 ~~~gtVLEvK~~kGlG~tidvIl~~G~L~~GD~Iv~~~~~Gpi~tkIRaLl~p~Pl~E~R~k~~~~~~~~v~aa~gVkI~ 103 (145)
.++++|+|++.++|.|+++++++++|+|++||.++. |+.++|||+|+.+ ++++++++.|+.+|.|+
T Consensus 178 ~~~~~V~e~~~~~g~G~V~~g~V~~G~l~~Gd~v~~----g~~~~kVr~i~~~----------~g~~v~~A~~G~~V~i~ 243 (537)
T 3izy_P 178 AVEGTVIESFTDKGRGPVTTAIIQRGTLRKGSILVA----GKSWAKVRLMFDE----------NGRAVNEAYPSMPVGII 243 (537)
T ss_dssp SEEEEEEEECCCTTCCCCEEEEEEEECCSSEEEECC----SSCCEEEEEEEEC----------CCCCSCCSCCSTTCCCC
T ss_pred CcceeEEEEEEeCCCceEEEEEEecCEEEcCCEEEe----CCceEEEEEEEcC----------CCCCCcEEcCCCEEEEE
Confidence 379999999999999999999999999999999865 4566899999975 46889999999999999
Q ss_pred cCCCCcc-cCCCeEEEecCccc
Q psy9896 104 AKDLEKT-IAGLNLRVAKDQDE 124 (145)
Q Consensus 104 a~~Le~~-~AGs~l~vv~~~~e 124 (145)
|. +++ .+|+.|.++.+++.
T Consensus 244 g~--~~~~~~Gd~l~~~~~~~~ 263 (537)
T 3izy_P 244 GW--RDLPSAGDEILEVESEPR 263 (537)
T ss_dssp SS--EEEEEEESSCCSCCSSCC
T ss_pred CC--CCCCCCCCEEEecCChHH
Confidence 64 565 99999999988765
No 4
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=97.69 E-value=0.00026 Score=59.41 Aligned_cols=82 Identities=21% Similarity=0.191 Sum_probs=65.8
Q ss_pred ceEEEEEEeeeCCcceEEEEEEEccEEcCCCEEEEccCCC-ceeeeeeeccCCCcchhhcccccceeeceeecCcCeEEe
Q psy9896 25 LQATVLEVKAIPGLGTTIDTILVNGTLYEGDTVVLAGTDG-PIVTQIRSLLMPQPMQELRVKNAYVEYKKIKGTQGVKIA 103 (145)
Q Consensus 25 ~~gtVLEvK~~kGlG~tidvIl~~G~L~~GD~Iv~~~~~G-pi~tkIRaLl~p~Pl~E~R~k~~~~~~~~v~aa~gVkI~ 103 (145)
....|.++..++|.|+++...+++|+|++||.|.+++.++ +..++|+.+... ..+++++.|-.-|-+.
T Consensus 221 ~~~~v~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~~~~~~~~~~~V~~i~~~-----------~~~~~~a~aG~~v~~~ 289 (405)
T 2c78_A 221 FLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMH-----------RKTLQEGIAGDNVGVL 289 (405)
T ss_dssp CEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEESSSSSCEEEEEEEEEET-----------TEEESEEETTCEEEEE
T ss_pred cEEEEEEEEEcCCCceEEEEEEecccccCCCEEEEeCCCCCeeeEEEEEEEEC-----------CcccCEEcCCCEEEEE
Confidence 6889999999999999999999999999999999887653 688999998743 4677888887755555
Q ss_pred --cCCCCcccCCCeEE
Q psy9896 104 --AKDLEKTIAGLNLR 117 (145)
Q Consensus 104 --a~~Le~~~AGs~l~ 117 (145)
+-+.+++..|+.+-
T Consensus 290 l~g~~~~~i~~G~~l~ 305 (405)
T 2c78_A 290 LRGVSREEVERGQVLA 305 (405)
T ss_dssp ESSCCTTTCCTTCEEE
T ss_pred ECCCcHhhcCceEEEE
Confidence 33456777787554
No 5
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=97.65 E-value=0.00022 Score=59.91 Aligned_cols=82 Identities=23% Similarity=0.298 Sum_probs=65.7
Q ss_pred ceEEEEEEeeeCCcceEEEEEEEccEEcCCCEEEEccCCCceeeeeeeccCCCcchhhcccccceeeceeecCcCeEEec
Q psy9896 25 LQATVLEVKAIPGLGTTIDTILVNGTLYEGDTVVLAGTDGPIVTQIRSLLMPQPMQELRVKNAYVEYKKIKGTQGVKIAA 104 (145)
Q Consensus 25 ~~gtVLEvK~~kGlG~tidvIl~~G~L~~GD~Iv~~~~~Gpi~tkIRaLl~p~Pl~E~R~k~~~~~~~~v~aa~gVkI~a 104 (145)
+...|-++..++|.|+++..-+++|+|++||.|.+.+.+++..++|+.|... .+.++++.|-.-|-+.-
T Consensus 204 ~~~~v~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~~~~~~~~~~V~~i~~~-----------~~~~~~a~aG~~v~~~l 272 (397)
T 1d2e_A 204 FLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFLGHSKNIRTVVTGIEMF-----------HKSLDRAEAGDNLGALV 272 (397)
T ss_dssp CEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEEETTEEEEEEEEEEEET-----------TEEESEEETTCEEEEEE
T ss_pred EEEEEEEEEEeCCceEEEEEEEeeceEeCCCEEEEeCCCCCeEEEEEEEEEC-----------CcccCEecCCCceEEEe
Confidence 6889999999999999999999999999999999887765688999998742 46778888877555553
Q ss_pred C--CCCcccCCCeEE
Q psy9896 105 K--DLEKTIAGLNLR 117 (145)
Q Consensus 105 ~--~Le~~~AGs~l~ 117 (145)
. +.+++..|+.+.
T Consensus 273 ~~i~~~~i~~G~~l~ 287 (397)
T 1d2e_A 273 RGLKREDLRRGLVMA 287 (397)
T ss_dssp SSCCGGGCCTTCEEE
T ss_pred cccchhccCceeEEe
Confidence 3 346667777554
No 6
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=97.08 E-value=0.0018 Score=63.52 Aligned_cols=82 Identities=17% Similarity=0.185 Sum_probs=65.8
Q ss_pred ceEEEEEEeeeCCcceEEEEEEEccEEcCCCEEEEccCCCceeeeeeeccCCCcchhhcccccceeeceeecCcCeEEe-
Q psy9896 25 LQATVLEVKAIPGLGTTIDTILVNGTLYEGDTVVLAGTDGPIVTQIRSLLMPQPMQELRVKNAYVEYKKIKGTQGVKIA- 103 (145)
Q Consensus 25 ~~gtVLEvK~~kGlG~tidvIl~~G~L~~GD~Iv~~~~~Gpi~tkIRaLl~p~Pl~E~R~k~~~~~~~~v~aa~gVkI~- 103 (145)
+...|-++..++|.|+++...+.+|+|++||.|.+++.+++..++||.|... .++++++.|-.-|-+.
T Consensus 495 fr~pId~Vf~i~G~GtVvtGrV~sGtLkvGD~V~I~ps~~~~~~kVksI~~~-----------~~~v~eA~AGd~Vgl~L 563 (1289)
T 3avx_A 495 FLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMF-----------RKLLDEGRAGENVGVLL 563 (1289)
T ss_dssp CEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEESSSSCEEEEEEEEECS-----------SCEESEEETTCEEEEEE
T ss_pred eeeeccccccccCCcEEEEEEEeccEEecCCEEEEecCCCceeEEEEEEeec-----------CceeeEEecCCcceeEe
Confidence 5788999999999999999999999999999999998877788999999753 4677888887655444
Q ss_pred -cCCCCcccCCCeEE
Q psy9896 104 -AKDLEKTIAGLNLR 117 (145)
Q Consensus 104 -a~~Le~~~AGs~l~ 117 (145)
+-+.+++..|+-+.
T Consensus 564 ~GI~~~dI~RGdVL~ 578 (1289)
T 3avx_A 564 RGIKREEIERGQVLA 578 (1289)
T ss_dssp SSCCGGGCCTTCEEE
T ss_pred eecchhcCCcccEEe
Confidence 33346667777543
No 7
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.03 E-value=0.0013 Score=59.31 Aligned_cols=83 Identities=19% Similarity=0.213 Sum_probs=66.7
Q ss_pred CcceEEEEEEeeeCCcceEEEEEEEccEEcCCCEEEEccCCCceeeeeeeccCCCcchhhcccccceeeceeecCcCeEE
Q psy9896 23 NELQATVLEVKAIPGLGTTIDTILVNGTLYEGDTVVLAGTDGPIVTQIRSLLMPQPMQELRVKNAYVEYKKIKGTQGVKI 102 (145)
Q Consensus 23 ~~~~gtVLEvK~~kGlG~tidvIl~~G~L~~GD~Iv~~~~~Gpi~tkIRaLl~p~Pl~E~R~k~~~~~~~~v~aa~gVkI 102 (145)
..+.+.|..+..+++.|..+.+-+++|+|+.||+|..+. ...+|..|+... ..++..++++.|..=+-|
T Consensus 282 ~p~~~~V~k~~~d~~~G~~~~~rV~sG~l~~g~~v~~~~----~~~~v~~l~~~~-------g~~~~~v~~a~aG~iv~i 350 (665)
T 2dy1_A 282 GPPLAKVFKVQVDPFMGQVAYLRLYRGRLKPGDSLQSEA----GQVRLPHLYVPM-------GKDLLEVEEAEAGFVLGV 350 (665)
T ss_dssp CSCEEEEEEEEEETTTEEEEEEEEEESEECTTEEEBCTT----SCEEESSEEEEE-------TTEEEEESCEETTCEEEE
T ss_pred CCeEEEEEEEEEcCCCCeEEEEEEcccEEecCCEEEcCC----CeEEEeEEEEEe-------CCCeeECCEECCCCEEEE
Confidence 347999999999999999999999999999999999764 446777776431 125678888888777777
Q ss_pred ecCCCCcccCCCeEEE
Q psy9896 103 AAKDLEKTIAGLNLRV 118 (145)
Q Consensus 103 ~a~~Le~~~AGs~l~v 118 (145)
. +|+++..|+.|.-
T Consensus 351 ~--gl~~~~~Gdtl~~ 364 (665)
T 2dy1_A 351 P--KAEGLHRGMVLWQ 364 (665)
T ss_dssp S--SCTTCCTTCEEES
T ss_pred e--CCccCccCCEEec
Confidence 6 6788889987763
No 8
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=96.98 E-value=0.0035 Score=53.30 Aligned_cols=80 Identities=20% Similarity=0.260 Sum_probs=65.7
Q ss_pred ceEEEEEEeeeCCcceEEEEEEEccEEcCCCEEEEccCCCceeeeeeeccCCCcchhhcccccceeeceeecCcCeEEe-
Q psy9896 25 LQATVLEVKAIPGLGTTIDTILVNGTLYEGDTVVLAGTDGPIVTQIRSLLMPQPMQELRVKNAYVEYKKIKGTQGVKIA- 103 (145)
Q Consensus 25 ~~gtVLEvK~~kGlG~tidvIl~~G~L~~GD~Iv~~~~~Gpi~tkIRaLl~p~Pl~E~R~k~~~~~~~~v~aa~gVkI~- 103 (145)
++..|-.|...+|.|+++..-+.+|+|++||.|.++.. ...++|+.|.. ..++++++.|...|-+.
T Consensus 233 ~~~~v~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~--~~~~~V~~i~~-----------~~~~~~~a~aG~~v~~~l 299 (435)
T 1jny_A 233 LRIPIQDVYSISGVGTVPVGRVESGVLKVGDKIVFMPA--GKVGEVRSIET-----------HHTKMDKAEPGDNIGFNV 299 (435)
T ss_dssp CBEEEEEEEEETTTEEEEEEECCBSCEETTCEEEEETT--TEEEEEEEEEE-----------TTEEESEECTTCEEEEEE
T ss_pred eEEEEEEEEEeCCCcEEEEEEEecCeEEcCCEEEECCc--eeEEEEEEEEE-----------CCcEEeEEcCCCEEEEEE
Confidence 57789999999999999999999999999999999764 47899999974 24778888888766664
Q ss_pred -cCCCCcccCCCeEE
Q psy9896 104 -AKDLEKTIAGLNLR 117 (145)
Q Consensus 104 -a~~Le~~~AGs~l~ 117 (145)
+.+++++..|+.+.
T Consensus 300 ~g~~~~~i~~Gd~l~ 314 (435)
T 1jny_A 300 RGVEKKDIKRGDVVG 314 (435)
T ss_dssp ESSCGGGCCTTCEEE
T ss_pred ecCCHHHcCCccEec
Confidence 44567778888665
No 9
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=96.66 E-value=0.011 Score=49.63 Aligned_cols=80 Identities=14% Similarity=0.133 Sum_probs=60.7
Q ss_pred ceEEEEEEeeeCCcceEEEEEEEccEEcCCCEEEEccCCCceeeeeeeccCCCcchhhcccccceeeceeecCcCeEEe-
Q psy9896 25 LQATVLEVKAIPGLGTTIDTILVNGTLYEGDTVVLAGTDGPIVTQIRSLLMPQPMQELRVKNAYVEYKKIKGTQGVKIA- 103 (145)
Q Consensus 25 ~~gtVLEvK~~kGlG~tidvIl~~G~L~~GD~Iv~~~~~Gpi~tkIRaLl~p~Pl~E~R~k~~~~~~~~v~aa~gVkI~- 103 (145)
.+..|-++...+|.|+++..-+.+|+|++||.|.+...+ ..++|+.|... .+.++++.|..-|-+.
T Consensus 193 ~r~~v~~vf~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~--~~~~V~~i~~~-----------~~~v~~a~aGd~v~i~l 259 (370)
T 2elf_A 193 ARIFIDHAFNVTGKGCVVLGVVKQGISKDKDKTKIFPLD--RDIEIRSIQSH-----------DVDIDSAPAGTRVGMRL 259 (370)
T ss_dssp CEEEEEEEECCC---CEEEEEEEESEEETTCEEEEETTT--EEEEEEEEEET-----------TEEESEEETTCEEEEEE
T ss_pred ccccceeEEEcCCCceEEEEEEECCEEeeCCEEEECCCC--cEEEEeEEEEC-----------CCCccEEcCCCcceEEE
Confidence 466799999999999999999999999999999987543 67899998642 4778888888755554
Q ss_pred -cCCCCcccCCCeEE
Q psy9896 104 -AKDLEKTIAGLNLR 117 (145)
Q Consensus 104 -a~~Le~~~AGs~l~ 117 (145)
+-+++++..|+.+.
T Consensus 260 ~gv~~~~i~~Gdvl~ 274 (370)
T 2elf_A 260 KNVQAKDIERGFIIS 274 (370)
T ss_dssp ESCCGGGCCTTCEEE
T ss_pred eccCHHHcCCceEEE
Confidence 44556778888664
No 10
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=96.63 E-value=0.0069 Score=52.19 Aligned_cols=79 Identities=14% Similarity=0.168 Sum_probs=62.1
Q ss_pred cceEEEEEEeeeCCcceEEEEEEEccEEcCCCEEEEccCCCceeeeeeeccCCCcchhhcccccceeeceeecCcCeEE-
Q psy9896 24 ELQATVLEVKAIPGLGTTIDTILVNGTLYEGDTVVLAGTDGPIVTQIRSLLMPQPMQELRVKNAYVEYKKIKGTQGVKI- 102 (145)
Q Consensus 24 ~~~gtVLEvK~~kGlG~tidvIl~~G~L~~GD~Iv~~~~~Gpi~tkIRaLl~p~Pl~E~R~k~~~~~~~~v~aa~gVkI- 102 (145)
.+...|-++. +|.|+++..-+.+|+|++||.|+++.. ...++||.|.++ ..++++++.|..-|-+
T Consensus 273 p~~~~v~~~~--~~~G~v~~G~v~~G~l~~gd~v~~~p~--~~~~~V~~i~~~----------~~~~~~~a~aG~~v~i~ 338 (467)
T 1r5b_A 273 PFIMPIASKY--KDLGTILEGKIEAGSIKKNSNVLVMPI--NQTLEVTAIYDE----------ADEEISSSICGDQVRLR 338 (467)
T ss_dssp CCEEECCEEE--ESSSEEEEEECCBSEEETTEEEEEETT--TEEEEEEEEECT----------TCCEESEEETTCEEEEE
T ss_pred CcEEEEEEEE--eCCCeEEEEEEeeeEEeeCCEEEEccC--CeeEEEEEEecc----------CCcEeeEEcCCCEEEEE
Confidence 3677787774 478999999999999999999999754 267899999863 2578888998876666
Q ss_pred -ecCCCCcccCCCeEE
Q psy9896 103 -AAKDLEKTIAGLNLR 117 (145)
Q Consensus 103 -~a~~Le~~~AGs~l~ 117 (145)
.+ +.+++..|+-+.
T Consensus 339 l~g-~~~~i~rG~vl~ 353 (467)
T 1r5b_A 339 VRG-DDSDVQTGYVLT 353 (467)
T ss_dssp EES-CCTTCCTTCEEE
T ss_pred Eec-cHhhCCceEEEe
Confidence 45 577788888554
No 11
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=96.54 E-value=0.017 Score=52.38 Aligned_cols=84 Identities=23% Similarity=0.203 Sum_probs=66.3
Q ss_pred cceEEEEEEeeeCCcceEEEEEEEccEEcCCCEEEEccCCCc-eeeeeeeccCCCcchhhcccccceeeceeecCcCeEE
Q psy9896 24 ELQATVLEVKAIPGLGTTIDTILVNGTLYEGDTVVLAGTDGP-IVTQIRSLLMPQPMQELRVKNAYVEYKKIKGTQGVKI 102 (145)
Q Consensus 24 ~~~gtVLEvK~~kGlG~tidvIl~~G~L~~GD~Iv~~~~~Gp-i~tkIRaLl~p~Pl~E~R~k~~~~~~~~v~aa~gVkI 102 (145)
.+.+.|..+..+++.|..+-+-+++|+|+.||+|........ -++++..+.- .++..++++.|..=+-|
T Consensus 308 p~~~~Vfk~~~d~~~G~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g----------~~~~~v~~~~aGdI~~i 377 (691)
T 1dar_A 308 PLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHA----------NHREEVEELKAGDLGAV 377 (691)
T ss_dssp CCEEEEEEEEEETTTEEEEEEEEEESEEESSCEEEETTTTEEEECCEEEEECS----------SCEEEESEEETTCEEEE
T ss_pred CcEEEEEEEEEcCCCCcEEEEEEeeeeEecCCEEEecCCCcEEEEceEEEEeC----------CCceEcceecCCCEEEE
Confidence 378999999999999999999999999999999997654311 2333443332 36789999999988888
Q ss_pred ecCCCCcccCCCeEEEe
Q psy9896 103 AAKDLEKTIAGLNLRVA 119 (145)
Q Consensus 103 ~a~~Le~~~AGs~l~vv 119 (145)
. +|+++..|+.|.-.
T Consensus 378 ~--gl~~~~~Gdtl~~~ 392 (691)
T 1dar_A 378 V--GLKETITGDTLVGE 392 (691)
T ss_dssp E--CCSSCCTTCEEEET
T ss_pred e--CcccCccCCEEecC
Confidence 8 58899999988743
No 12
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=96.43 E-value=0.0069 Score=50.86 Aligned_cols=69 Identities=17% Similarity=0.214 Sum_probs=55.7
Q ss_pred ceEEEEEEeeeCC--------cceEEEEEEEccEEcCCCEEEEccC-----C-----CceeeeeeeccCCCcchhhcccc
Q psy9896 25 LQATVLEVKAIPG--------LGTTIDTILVNGTLYEGDTVVLAGT-----D-----GPIVTQIRSLLMPQPMQELRVKN 86 (145)
Q Consensus 25 ~~gtVLEvK~~kG--------lG~tidvIl~~G~L~~GD~Iv~~~~-----~-----Gpi~tkIRaLl~p~Pl~E~R~k~ 86 (145)
++..|.++...+| .|+++...+.+|+|++||.|.++.. + +|+.++||+|.+
T Consensus 207 ~~~~v~~~f~v~~~g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~----------- 275 (408)
T 1s0u_A 207 PRMYVARSFDINKPGTEIKDLKGGVLGGAIIQGVFKVGDEIEIRPGIKVTEGNKTFWKPLTTKIVSLAA----------- 275 (408)
T ss_dssp CEEEEEEEECCCCSSCCGGGCCCCEEEEEEEESCEETTCEEEEEEEEEECCTTCCEEEEEEEECCEEEE-----------
T ss_pred eEEEEEEEEeecCCCcccccCceeEEEEEEEECeEecCCEEEEcCCcccccccccccccceeEEEEEEE-----------
Confidence 7889999876654 7889999999999999999998632 2 267899999985
Q ss_pred cceeeceeecCcCeEEec
Q psy9896 87 AYVEYKKIKGTQGVKIAA 104 (145)
Q Consensus 87 ~~~~~~~v~aa~gVkI~a 104 (145)
..+.++++.|..-|-+..
T Consensus 276 ~~~~~~~a~~G~~v~~~~ 293 (408)
T 1s0u_A 276 GNTILRKAHPGGLIGVGT 293 (408)
T ss_dssp TTEEESEECSSSCEEEEC
T ss_pred CCEEcCEEeCCCeEEEEe
Confidence 357788998888777753
No 13
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=96.20 E-value=0.012 Score=49.29 Aligned_cols=69 Identities=20% Similarity=0.215 Sum_probs=55.4
Q ss_pred cceEEEEEEeeeCC--------cceEEEEEEEccEEcCCCEEEEccC----------CCceeeeeeeccCCCcchhhccc
Q psy9896 24 ELQATVLEVKAIPG--------LGTTIDTILVNGTLYEGDTVVLAGT----------DGPIVTQIRSLLMPQPMQELRVK 85 (145)
Q Consensus 24 ~~~gtVLEvK~~kG--------lG~tidvIl~~G~L~~GD~Iv~~~~----------~Gpi~tkIRaLl~p~Pl~E~R~k 85 (145)
.+...|.++....| .|+++..-+.+|+|++||.|.+... +.|+.++||+|..
T Consensus 200 ~~~~~v~~~~~v~~~~~~~~~~~G~v~~g~v~~G~~~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~---------- 269 (403)
T 3sjy_A 200 KPVMLVIRSFDVNKPGTQFNELKGGVIGGSIIQGLFKVDQEIKVLPGLRVEKQGKVSYEPIFTKISSIRF---------- 269 (403)
T ss_dssp CCEEEEEEEECCCCTTCCSSSCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEE----------
T ss_pred CcEEEEEEEEeecCCCcccccCcCcEEEEEEEeCEEecCCEEEEeCCcccccccccccccccEEEEEEEE----------
Confidence 37889999987777 7999999999999999999998532 2356789999985
Q ss_pred ccceeeceeecCcCeEEe
Q psy9896 86 NAYVEYKKIKGTQGVKIA 103 (145)
Q Consensus 86 ~~~~~~~~v~aa~gVkI~ 103 (145)
..+.++++.|..-|-+.
T Consensus 270 -~~~~~~~a~~G~~v~~~ 286 (403)
T 3sjy_A 270 -GDEEFKEAKPGGLVAIG 286 (403)
T ss_dssp -TTEEESEECSSSCEEEE
T ss_pred -CCEEcCEEeCCCEEEEE
Confidence 35778888887776663
No 14
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=96.09 E-value=0.021 Score=47.86 Aligned_cols=69 Identities=23% Similarity=0.234 Sum_probs=54.1
Q ss_pred ceEEEEEEeeeCC--------cceEEEEEEEccEEcCCCEEEEccC-----C-----CceeeeeeeccCCCcchhhcccc
Q psy9896 25 LQATVLEVKAIPG--------LGTTIDTILVNGTLYEGDTVVLAGT-----D-----GPIVTQIRSLLMPQPMQELRVKN 86 (145)
Q Consensus 25 ~~gtVLEvK~~kG--------lG~tidvIl~~G~L~~GD~Iv~~~~-----~-----Gpi~tkIRaLl~p~Pl~E~R~k~ 86 (145)
+...|.++...+| .|+++..-+.+|+|++||.|.+... + +|+.++||+|.+
T Consensus 209 ~~~~v~~~f~v~~~g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~g~~~~~~~~~~v~~i~~----------- 277 (410)
T 1kk1_A 209 PKMLVLRSFDVNKPGTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQA----------- 277 (410)
T ss_dssp CEEEEEEEECCSCCC----CCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEE-----------
T ss_pred cEEEEEEEEeccCCCccccCCceEEEEEEEEeCeEeeCCEEEECCCCccccccccccccceeEEEEEEE-----------
Confidence 6788888876554 6778999999999999999998642 2 367899999985
Q ss_pred cceeeceeecCcCeEEec
Q psy9896 87 AYVEYKKIKGTQGVKIAA 104 (145)
Q Consensus 87 ~~~~~~~v~aa~gVkI~a 104 (145)
..++++++.|..-|-+..
T Consensus 278 ~~~~v~~a~aG~~v~~~~ 295 (410)
T 1kk1_A 278 GGQFVEEAYPGGLVGVGT 295 (410)
T ss_dssp TTEEESEECSSSCEEEEE
T ss_pred CCeEecEEcCCCEEEEEE
Confidence 357788888887666653
No 15
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=96.07 E-value=0.039 Score=49.27 Aligned_cols=78 Identities=10% Similarity=0.062 Sum_probs=59.5
Q ss_pred ceEEEEEEeeeCCcceEEEEEEEccEEcCCCEEEEccCCCceeeeeeeccCCCcchhhcccccceeec-eeecCcCeEEe
Q psy9896 25 LQATVLEVKAIPGLGTTIDTILVNGTLYEGDTVVLAGTDGPIVTQIRSLLMPQPMQELRVKNAYVEYK-KIKGTQGVKIA 103 (145)
Q Consensus 25 ~~gtVLEvK~~kGlG~tidvIl~~G~L~~GD~Iv~~~~~Gpi~tkIRaLl~p~Pl~E~R~k~~~~~~~-~v~aa~gVkI~ 103 (145)
+...|-++... |.|+++..-+.+|+|++||.|.++..+ ..++||.|... ...++ ++.|..-|-+.
T Consensus 405 ~r~~v~~v~~~-~~g~v~~G~v~~G~l~~Gd~v~i~p~~--~~~~V~~i~~~-----------~~~~~~~a~aG~~v~~~ 470 (592)
T 3mca_A 405 LRLSIDDVYRS-PRSVTVTGRVEAGNVQVNQVLYDVSSQ--EDAYVKNVIRN-----------SDPSSTWAVAGDTVTLQ 470 (592)
T ss_dssp CEEEEEEEEEE-TTEEEEEEEEEESEEETTCEEEETTTT--EEEEEEEEECS-----------SSCSCCEEETTCEEEEE
T ss_pred chheeeEEEec-CCeEEEEEEEeeeeEccCCEEEEccCC--ceEEEEEEEEc-----------CccCcceecCCCEEEEE
Confidence 68999999999 999999999999999999999997543 46899999863 35667 77777655544
Q ss_pred cCCC--CcccCCCeE
Q psy9896 104 AKDL--EKTIAGLNL 116 (145)
Q Consensus 104 a~~L--e~~~AGs~l 116 (145)
-.|+ .++..|+-+
T Consensus 471 l~~i~~~~i~rG~vl 485 (592)
T 3mca_A 471 LADIEVNQLRPGDIL 485 (592)
T ss_dssp ESSSCGGGCCTTCEE
T ss_pred EccccccccceEEEe
Confidence 3333 345566644
No 16
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=95.93 E-value=0.079 Score=47.83 Aligned_cols=48 Identities=19% Similarity=0.257 Sum_probs=40.6
Q ss_pred ceEEEEEEeeeCCcceEEEEEEEccEEcCCCEEEEccCCCceeeeeeecc
Q psy9896 25 LQATVLEVKAIPGLGTTIDTILVNGTLYEGDTVVLAGTDGPIVTQIRSLL 74 (145)
Q Consensus 25 ~~gtVLEvK~~kGlG~tidvIl~~G~L~~GD~Iv~~~~~Gpi~tkIRaLl 74 (145)
+.+.|.++..+++.|.++.+-+++|+|++||.|.+...+. ..+|+.+.
T Consensus 193 l~~lV~~~~~d~~~G~v~~~rV~sG~l~~Gd~I~~~~~~~--~~~v~~i~ 240 (600)
T 2ywe_A 193 LKALIFDSYYDPYRGAVAFVRIFDGEVKPGDKIMLMSTGK--EYEVTEVG 240 (600)
T ss_dssp CEEEEEEEEEETTTEEEEEEEEEESEECTTCEEEETTTTE--EEECCEEE
T ss_pred cceeEEEEeecccceEEEEEEEEeCEEecCCEEEeccccc--eEeeeccc
Confidence 6899999999999999999999999999999999986543 33555554
No 17
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=95.75 E-value=0.048 Score=46.86 Aligned_cols=89 Identities=11% Similarity=0.065 Sum_probs=59.6
Q ss_pred cceEEEEEEeeeC---CcceEEEEEEEccEEcCCCEEEEccCCCceeeeeeeccCCCcchhhcccccceeeceeecCcCe
Q psy9896 24 ELQATVLEVKAIP---GLGTTIDTILVNGTLYEGDTVVLAGTDGPIVTQIRSLLMPQPMQELRVKNAYVEYKKIKGTQGV 100 (145)
Q Consensus 24 ~~~gtVLEvK~~k---GlG~tidvIl~~G~L~~GD~Iv~~~~~Gpi~tkIRaLl~p~Pl~E~R~k~~~~~~~~v~aa~gV 100 (145)
..+-.|-++-..+ |.|+++.--+.+|+|++||.|.++..+ ..++||.+.+.. .-+..-.-..++++.|..-|
T Consensus 266 p~r~~v~~v~~~~~~~g~g~v~~G~v~~G~l~~gd~v~~~p~~--~~~~V~~i~~~~---~~~~~~~~~~~~~a~aG~~v 340 (483)
T 3p26_A 266 PFLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSE--QSCIVDKIQVGS---QQGQSTNHEETDVAIKGDFV 340 (483)
T ss_dssp CCEEEEEEEEC---CCSCCEEEEEEEEESEECTTCEEEEETTT--EEEEEEEEEETT---TC-----CCEESCEETTCEE
T ss_pred ceEEEEEEEEccCCcCCCceEEEEEEecceEccCCEEEEeCCC--CeEEEEEEEEcC---ccccccccccccEECCCCEE
Confidence 3688888888877 699999999999999999999998654 468999998641 00000012567777777666
Q ss_pred EEecCC--CCcccCCCeEE
Q psy9896 101 KIAAKD--LEKTIAGLNLR 117 (145)
Q Consensus 101 kI~a~~--Le~~~AGs~l~ 117 (145)
-+.-.+ .+++..|+-+.
T Consensus 341 ~~~l~~~~~~di~rG~vl~ 359 (483)
T 3p26_A 341 TLKLRKAYPEDIQNGDLAA 359 (483)
T ss_dssp EEEEESCCGGGCCTTCEEE
T ss_pred EEEEEecccccCCceEEEE
Confidence 664333 35556676443
No 18
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=95.68 E-value=0.053 Score=46.53 Aligned_cols=80 Identities=20% Similarity=0.228 Sum_probs=60.6
Q ss_pred ceEEEEEEeeeCCcceEEEEEEEccEEcCCCEEEEccCCCceeeeeeeccCCCcchhhcccccceeeceeecCcCeEEec
Q psy9896 25 LQATVLEVKAIPGLGTTIDTILVNGTLYEGDTVVLAGTDGPIVTQIRSLLMPQPMQELRVKNAYVEYKKIKGTQGVKIAA 104 (145)
Q Consensus 25 ~~gtVLEvK~~kGlG~tidvIl~~G~L~~GD~Iv~~~~~Gpi~tkIRaLl~p~Pl~E~R~k~~~~~~~~v~aa~gVkI~a 104 (145)
.+-.|-|+...+|.|+++..-+..|+|++||.|.+... ...++|+.+... ...++++.|..-|-|.-
T Consensus 244 ~r~~i~~v~~~~g~G~v~~G~v~~G~l~~gd~v~~~p~--~~~~~V~~i~~~-----------~~~~~~a~aG~~v~i~l 310 (458)
T 1f60_A 244 LRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPA--GVTTEVKSVEMH-----------HEQLEQGVPGDNVGFNV 310 (458)
T ss_dssp CEEEEEEEEEETTTEEEEEEECCBSCBCTTCEEEEETT--TEEEEEEEEEET-----------TEECSCBCTTCEEEEEE
T ss_pred cEEEEEEEEEeCCCcEEEEEEEeCCeEcCCCEEEECCC--CceEEEeEEEEC-----------CeEEEEEcCCCEEEEEE
Confidence 68889999999999999999999999999999999754 378899999742 35666777665455543
Q ss_pred CCC--CcccCCCeEE
Q psy9896 105 KDL--EKTIAGLNLR 117 (145)
Q Consensus 105 ~~L--e~~~AGs~l~ 117 (145)
.++ +++..|+-+-
T Consensus 311 ~gi~~~~i~rG~vl~ 325 (458)
T 1f60_A 311 KNVSVKEIRRGNVCG 325 (458)
T ss_dssp SSCCTTTSCTTCEEE
T ss_pred cCCcccccCceeEEe
Confidence 333 4556666443
No 19
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=95.19 E-value=0.072 Score=47.77 Aligned_cols=87 Identities=11% Similarity=0.058 Sum_probs=60.0
Q ss_pred ceEEEEEEeeeC---CcceEEEEEEEccEEcCCCEEEEccCCCceeeeeeeccCCCcchhhcccccceeeceeecCcCeE
Q psy9896 25 LQATVLEVKAIP---GLGTTIDTILVNGTLYEGDTVVLAGTDGPIVTQIRSLLMPQPMQELRVKNAYVEYKKIKGTQGVK 101 (145)
Q Consensus 25 ~~gtVLEvK~~k---GlG~tidvIl~~G~L~~GD~Iv~~~~~Gpi~tkIRaLl~p~Pl~E~R~k~~~~~~~~v~aa~gVk 101 (145)
.+..|-++-..+ |.|+++.--+..|+|++||.|.++..+ ..++||++.+.. ..........++++.|..-|-
T Consensus 401 ~r~~V~~v~~~~~~~g~g~v~~G~V~~G~lk~Gd~v~~~p~~--~~~~VksI~~~~---~~~~~~~~~~v~~A~aGd~v~ 475 (611)
T 3izq_1 401 FLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSE--QSCIVDKIQVGS---QQGQSTNHEETDVAIKGDFVT 475 (611)
T ss_dssp CEEECCEEECCSSSCSSSSEEEEEEEESEECTTCEEEETTTT--EEEEEEEEECSS---CCSCSSSCCCCCCEETTCEEE
T ss_pred hhhheeeeeccCccCCCeeEEEEEEEeceeccCCEEEEecCC--ceEEEEEEEEcc---cccccccccccceecCCCcce
Confidence 578888888887 699999999999999999999998655 468999999751 000000125667777766666
Q ss_pred EecC--CCCcccCCCeE
Q psy9896 102 IAAK--DLEKTIAGLNL 116 (145)
Q Consensus 102 I~a~--~Le~~~AGs~l 116 (145)
|.-. +.+++..|+-+
T Consensus 476 l~l~~~~~~di~rGdvl 492 (611)
T 3izq_1 476 LKLRKAYPEDIQNGDLA 492 (611)
T ss_dssp EEESSCCTTSCCTTCEE
T ss_pred EEeeeccHhhCcceEEc
Confidence 5333 33555666644
No 20
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=95.14 E-value=0.088 Score=44.92 Aligned_cols=75 Identities=17% Similarity=0.356 Sum_probs=54.3
Q ss_pred ceEEEEEEeeeCCcceEEEEEEEccEEcCCCEEEEccCCCceeeeeeeccCCCcchhhcccccceeeceeecCcCeEEec
Q psy9896 25 LQATVLEVKAIPGLGTTIDTILVNGTLYEGDTVVLAGTDGPIVTQIRSLLMPQPMQELRVKNAYVEYKKIKGTQGVKIAA 104 (145)
Q Consensus 25 ~~gtVLEvK~~kGlG~tidvIl~~G~L~~GD~Iv~~~~~Gpi~tkIRaLl~p~Pl~E~R~k~~~~~~~~v~aa~gVkI~a 104 (145)
.+-.|-++- +|.|+++.--+.+|+|++||.|.++..+ ..++||.+.+ ....++++.|..-|-+.-
T Consensus 245 ~r~~v~~~~--~~~G~v~~G~v~~G~l~~Gd~v~~~p~~--~~~~V~~i~~-----------~~~~~~~a~aG~~v~~~l 309 (439)
T 3j2k_7 245 IRLPIVDKY--KDMGTVVLGKLESGSIFKGQQLVMMPNK--HNVEVLGILS-----------DDTETDFVAPGENLKIRL 309 (439)
T ss_pred eEEEEEEEE--cCCCeEEEEEEEeeEEecCCEEEEccCC--ceEEEEEEEE-----------CCeEcCEecCCCcceEEE
Confidence 567777774 5999999999999999999999998654 5689999875 245677777666555433
Q ss_pred CCCC--cccCCC
Q psy9896 105 KDLE--KTIAGL 114 (145)
Q Consensus 105 ~~Le--~~~AGs 114 (145)
.|++ ++.-|+
T Consensus 310 ~gi~~~~i~rG~ 321 (439)
T 3j2k_7 310 KGIEEEEILPGF 321 (439)
T ss_pred eccchhhcCCcE
Confidence 3333 334455
No 21
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=94.82 E-value=0.17 Score=46.00 Aligned_cols=82 Identities=17% Similarity=0.197 Sum_probs=63.1
Q ss_pred ceEEEEEEeeeCCcceEEEEEEEccEEcCCCEEEEccCCCceeeeeeeccCCCcchhhcccccceeeceeecCcCeEEec
Q psy9896 25 LQATVLEVKAIPGLGTTIDTILVNGTLYEGDTVVLAGTDGPIVTQIRSLLMPQPMQELRVKNAYVEYKKIKGTQGVKIAA 104 (145)
Q Consensus 25 ~~gtVLEvK~~kGlG~tidvIl~~G~L~~GD~Iv~~~~~Gpi~tkIRaLl~p~Pl~E~R~k~~~~~~~~v~aa~gVkI~a 104 (145)
+.+-|..+..+++.|..+-+=+++|+|+.||+|....... ..+|..|+... -.+...++++.|-.=+-|.
T Consensus 317 ~~~~VfK~~~d~~~G~~~~~RV~sG~l~~g~~v~~~~~~~--~~~v~~l~~~~-------g~~~~~v~~~~aGdIv~i~- 386 (704)
T 2rdo_7 317 FSALAFKIATDPFVGNLTFFRVYSGVVNSGDTVLNSVKAA--RERFGRIVQMH-------ANKREEIKEVRAGDIAAAI- 386 (704)
T ss_pred eEEEEEEEEEcCCCceEEEEEEEeeeecCCCEEEeCCCCc--EEEeceEEEEe-------CCCceEcceeCCCCEEEEe-
Confidence 6899999999999999999999999999999998765432 23555554321 1356888888888777777
Q ss_pred CCCCcccCCCeEE
Q psy9896 105 KDLEKTIAGLNLR 117 (145)
Q Consensus 105 ~~Le~~~AGs~l~ 117 (145)
+|+++..|+.|.
T Consensus 387 -gl~~~~~GdTl~ 398 (704)
T 2rdo_7 387 -GLKDVTTGDTLC 398 (704)
T ss_pred -CcccCccCCEEe
Confidence 578888888775
No 22
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=94.58 E-value=0.15 Score=43.11 Aligned_cols=82 Identities=20% Similarity=0.127 Sum_probs=56.8
Q ss_pred ceEEEEEEeeeCCcceEEEEEEEccEEcCCCEEEEccCCCceeeeeeeccCCCcchhhcccccceeeceeecCcCeEEec
Q psy9896 25 LQATVLEVKAIPGLGTTIDTILVNGTLYEGDTVVLAGTDGPIVTQIRSLLMPQPMQELRVKNAYVEYKKIKGTQGVKIAA 104 (145)
Q Consensus 25 ~~gtVLEvK~~kGlG~tidvIl~~G~L~~GD~Iv~~~~~Gpi~tkIRaLl~p~Pl~E~R~k~~~~~~~~v~aa~gVkI~a 104 (145)
....|-.+-...+-|..+---+.+|+|++||.|.++... ..++||.|... ...++++.|..-|-+..
T Consensus 244 ~~~~v~~v~~~~~~~~g~~G~v~~G~l~~gd~v~~~p~~--~~~~V~~i~~~-----------~~~~~~a~aG~~v~~~l 310 (434)
T 1zun_B 244 LRFPVQYVNRPNLNFRGFAGTLASGIVHKGDEIVVLPSG--KSSRVKSIVTF-----------EGELEQAGPGQAVTLTM 310 (434)
T ss_dssp CEEECCEEECSSSSCCEEEEECCBSCEETTCEEEETTTC--CEEEEEEEEET-----------TEEESEECTTCEEEEEE
T ss_pred cEEEEEEEeccCCCceEEEEEEecceEeCCCEEEEecCC--eEEEEEEEEEc-----------CcceeEecCCCEEEEEe
Confidence 344444443333333333345899999999999997532 57899999864 45789999999988887
Q ss_pred CCCCcccCCCeEEEe
Q psy9896 105 KDLEKTIAGLNLRVA 119 (145)
Q Consensus 105 ~~Le~~~AGs~l~vv 119 (145)
.+-.++..|+.+...
T Consensus 311 ~~~~~i~~G~~l~~~ 325 (434)
T 1zun_B 311 EDEIDISRGDLLVHA 325 (434)
T ss_dssp SSCCCCCTTCEEEET
T ss_pred CCccccCCccEEECC
Confidence 654456788876644
No 23
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=94.43 E-value=0.32 Score=43.72 Aligned_cols=40 Identities=33% Similarity=0.304 Sum_probs=37.2
Q ss_pred ceEEEEEEeeeCCcceEEEEEEEccEEcCCCEEEEccCCC
Q psy9896 25 LQATVLEVKAIPGLGTTIDTILVNGTLYEGDTVVLAGTDG 64 (145)
Q Consensus 25 ~~gtVLEvK~~kGlG~tidvIl~~G~L~~GD~Iv~~~~~G 64 (145)
..+.|.++..+++.|.++.+-+++|+|+.||.+.+...+.
T Consensus 191 ~~alI~d~~~d~~~G~v~~~rV~sG~l~~Gd~v~~~~~~~ 230 (599)
T 3cb4_D 191 LQALIIDSWFDNYLGVVSLIRIKNGTLRKGDKVKVMSTGQ 230 (599)
T ss_dssp CEEEEEEEEEETTTEEEEEEEEEESCEESSCEEEETTTCC
T ss_pred ceeeeeeccccccccEEEEEEEEeCEEecCCEEEeccccc
Confidence 6899999999999999999999999999999999987654
No 24
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=94.42 E-value=0.014 Score=50.54 Aligned_cols=79 Identities=19% Similarity=0.263 Sum_probs=57.7
Q ss_pred ceEEEEEEeeeCCcceEEEEEEEccEEcCCCEEEEccCCCceeeeeeeccCCCcchhhcccccceeeceeecCcCeEEec
Q psy9896 25 LQATVLEVKAIPGLGTTIDTILVNGTLYEGDTVVLAGTDGPIVTQIRSLLMPQPMQELRVKNAYVEYKKIKGTQGVKIAA 104 (145)
Q Consensus 25 ~~gtVLEvK~~kGlG~tidvIl~~G~L~~GD~Iv~~~~~Gpi~tkIRaLl~p~Pl~E~R~k~~~~~~~~v~aa~gVkI~a 104 (145)
+...|-++...+|.|+++..-+.+|+|++||.+.+...+ ..++||.+... .+.++++.|..-|-+.-
T Consensus 200 ~~~~v~~v~~~~g~G~v~~g~v~~G~l~~gd~v~~~p~~--~~~~V~~i~~~-----------~~~v~~a~~G~~v~~~l 266 (482)
T 1wb1_A 200 FKMPLDHAFPIKGAGTVVTGTINKGIVKVGDELKVLPIN--MSTKVRSIQYF-----------KESVMEAKAGDRVGMAI 266 (482)
T ss_dssp CBCBCSCEECCSSCCCEECCCCCBSCCCSSEEECCTTTC--CCEEECCBCGG-----------GSCBCCCCSSCCCCEEC
T ss_pred ccccceeEEEecCCceEEEEEEEEeEEeeCCEEEECCCC--cEEEEeEEEEC-----------CeEeeEecCCCEEEEEe
Confidence 566778888899999999999999999999999996533 45799999842 35567777766555543
Q ss_pred CCC--CcccCCCeE
Q psy9896 105 KDL--EKTIAGLNL 116 (145)
Q Consensus 105 ~~L--e~~~AGs~l 116 (145)
.++ +.+..|+-+
T Consensus 267 ~~~~~~~i~~Gdvl 280 (482)
T 1wb1_A 267 QGVDAKQIYRGXIL 280 (482)
T ss_dssp SSCCSSCCCSSCBC
T ss_pred cCCCHhhccccceE
Confidence 333 345666654
No 25
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=94.25 E-value=0.2 Score=44.96 Aligned_cols=94 Identities=14% Similarity=0.094 Sum_probs=71.4
Q ss_pred ceEEEE--EEeeeCCcceEEEEEEEccEEcCCCEEEEccCCCceeeeeeeccCCCcchhhcccccceeeceeec--CcCe
Q psy9896 25 LQATVL--EVKAIPGLGTTIDTILVNGTLYEGDTVVLAGTDGPIVTQIRSLLMPQPMQELRVKNAYVEYKKIKG--TQGV 100 (145)
Q Consensus 25 ~~gtVL--EvK~~kGlG~tidvIl~~G~L~~GD~Iv~~~~~Gpi~tkIRaLl~p~Pl~E~R~k~~~~~~~~v~a--a~gV 100 (145)
++..|+ ++..... |..+=+-+.+|+++.|..+.+ .+|-..++|.+|-. ..+.++++.. .+|+
T Consensus 464 ~~~~i~~~~~f~~~~-~~i~g~~v~~G~~~~~~~~~~--~~~~~~g~i~sl~~-----------~k~~v~~~~~g~e~gi 529 (594)
T 1g7s_A 464 ASIRLIPKLVFRQSK-PAIGGVEVLTGVIRQGYPLMN--DDGETVGTVESMQD-----------KGENLKSASRGQKVAM 529 (594)
T ss_dssp EEEEEEEEEEEECSS-SEEEEEEEEEEEEETTCEEEC--TTSCEEEEEEEEEE-----------TTEEESEEETTCCEEE
T ss_pred EEEEEecceEEcCCC-CeEEEEEEecCEEecCCeEEe--cCCcEEEEEehhcc-----------cCccccccCCCCEEEE
Confidence 344556 5766655 899999999999999999988 67777888888863 4567777776 5677
Q ss_pred EEecCC-CCcccCCCeEEEecCcccHHHHHHHH
Q psy9896 101 KIAAKD-LEKTIAGLNLRVAKDQDEIDDLCDEV 132 (145)
Q Consensus 101 kI~a~~-Le~~~AGs~l~vv~~~~e~e~~~~ev 132 (145)
.|-++. .++...|+.|++....+.++.++++.
T Consensus 530 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~~~ 562 (594)
T 1g7s_A 530 AIKDAVYGKTIHEGDTLYVDIPENHYHILKEQL 562 (594)
T ss_dssp EEETCCBTTTBCTTCEEEECCCHHHHHTTTSCC
T ss_pred EEeCcccCCCCCCCCEEEEEEEhHHHHHHHHHH
Confidence 776432 17889999999998888887776433
No 26
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}
Probab=93.88 E-value=0.16 Score=39.36 Aligned_cols=66 Identities=20% Similarity=0.330 Sum_probs=48.1
Q ss_pred CcceEEEEEEEccEEcCCCEEEEccCCCceeeeeeeccCCCcchhhcccccceeeceeecCcCeEE--ecCCCCcccCCC
Q psy9896 37 GLGTTIDTILVNGTLYEGDTVVLAGTDGPIVTQIRSLLMPQPMQELRVKNAYVEYKKIKGTQGVKI--AAKDLEKTIAGL 114 (145)
Q Consensus 37 GlG~tidvIl~~G~L~~GD~Iv~~~~~Gpi~tkIRaLl~p~Pl~E~R~k~~~~~~~~v~aa~gVkI--~a~~Le~~~AGs 114 (145)
|.|+.+.==+..|++++||.+.+...+ ..++||.+.+. .+.++++.|-.-|-+ .+-+-+++.-|+
T Consensus 17 g~G~v~~G~v~~G~i~~Gd~v~i~P~~--~~~~V~~I~~~-----------~~~~~~A~aGd~V~l~L~gi~~~di~rG~ 83 (204)
T 3e1y_E 17 DMGTVVLGKLESGSICKGQQLVMMPNK--HNVEVLGILSD-----------DVETDTVAPGENLKIRLKGIEEEEILPGF 83 (204)
T ss_dssp SSSEEEEEECCBSCEESSCCEEETTTT--EEEEEEEECSS-----------SSCBSEECTTSEEEEEEEESSSSCCCTTC
T ss_pred CCCEEEEEEEecCEEECCCEEEECCCC--CEEEEEEEEEC-----------CEEeEEECCCCEEEEEEcCCCHHHCccce
Confidence 899998888999999999999998543 78999999964 356667776655555 332333455565
Q ss_pred e
Q psy9896 115 N 115 (145)
Q Consensus 115 ~ 115 (145)
-
T Consensus 84 v 84 (204)
T 3e1y_E 84 I 84 (204)
T ss_dssp E
T ss_pred E
Confidence 3
No 27
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=92.42 E-value=1.5 Score=38.61 Aligned_cols=102 Identities=15% Similarity=0.165 Sum_probs=75.3
Q ss_pred HHHHHHHHHhhcCcc--Cc--ceEEEEEEeeeCCcceEEEEEEEccEEcCCCEEEEccCCCc--eeeeeeeccCCCcchh
Q psy9896 8 IQYCQTFLKKRLMFK--NE--LQATVLEVKAIPGLGTTIDTILVNGTLYEGDTVVLAGTDGP--IVTQIRSLLMPQPMQE 81 (145)
Q Consensus 8 ~gl~Q~~m~~~L~~~--~~--~~gtVLEvK~~kGlG~tidvIl~~G~L~~GD~Iv~~~~~Gp--i~tkIRaLl~p~Pl~E 81 (145)
+.-.+.+|+..|... ++ ..+.|+++......|+.+=+-+.+|+++.|..+.+- .+|. ..++|.+|-
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~g~a~v~~~f~~~~~~~iaG~~v~~G~~~~~~~~~~~-r~~~~i~~g~i~sl~------- 459 (501)
T 1zo1_I 388 IDEVKAAMSGMLSPELKQQIIGLAEVRDVFKSPKFGAIAGCMVTEGVVKRHNPIRVL-RDNVVIYEGELESLR------- 459 (501)
T ss_dssp HHHTHHHHTTTSSTTCCCCCCCCEEEEECSSCCCSSCEEEEEEEEEEEETTCEEECC-SSSCCCEEEEBCCEE-------
T ss_pred HHHHHHHHHhhcCceeeeeeeeEEEEEEEEecCCCCEEEEEEEEeCEEecCCeEEEE-eCCeEEEEEEEehhc-------
Confidence 344567888877643 22 689999999888889999999999999999999883 3443 355666665
Q ss_pred hcccccceeeceeecCcCeEEecCCCCcccCCCeEEEecC
Q psy9896 82 LRVKNAYVEYKKIKGTQGVKIAAKDLEKTIAGLNLRVAKD 121 (145)
Q Consensus 82 ~R~k~~~~~~~~v~aa~gVkI~a~~Le~~~AGs~l~vv~~ 121 (145)
...+.++++..-.-+=|.-.++++...|+.++++.-
T Consensus 460 ----~~k~~v~e~~~g~ecgi~~~~~~~~~~gd~~~~~~~ 495 (501)
T 1zo1_I 460 ----RFKDDVNEVRNGMECGIGVKNYNDVRTGDVIEVFEI 495 (501)
T ss_dssp ----ETTEEESEEETTCCEEEEBCCCTTCCTTCEEEECCC
T ss_pred ----ccCccccEECCCCEEEEEEcCcCCCCCCCEEEEEEE
Confidence 245678888765433344447789999999998853
No 28
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=91.76 E-value=1.3 Score=29.90 Aligned_cols=77 Identities=19% Similarity=0.157 Sum_probs=55.9
Q ss_pred ceEEEEEEeeeCCcceEEEEEEEccEEcCCCEEEEccCCC-ceeeeeeeccCCCcchhhcccccceeecee-ecCcCeEE
Q psy9896 25 LQATVLEVKAIPGLGTTIDTILVNGTLYEGDTVVLAGTDG-PIVTQIRSLLMPQPMQELRVKNAYVEYKKI-KGTQGVKI 102 (145)
Q Consensus 25 ~~gtVLEvK~~kGlG~tidvIl~~G~L~~GD~Iv~~~~~G-pi~tkIRaLl~p~Pl~E~R~k~~~~~~~~v-~aa~gVkI 102 (145)
.-|.|++...+.|+ + .|-+...+.+||.|-+-+.+| ++..+|..|++. +++.++.+ .|..=|+|
T Consensus 8 fvG~V~~~~~~~g~---~-~ie~rN~f~~GD~iEi~~P~g~~~~~~v~~m~d~----------~G~~i~~A~~~~~~v~i 73 (89)
T 4he6_A 8 FAGLVLGYDPETGI---A-TVQQRNHFRPGDEVEFFGPEIENFTQVIEKIWDE----------DGNELDAARHPLQIVKF 73 (89)
T ss_dssp CSEEEEEEETTTTE---E-EEEESSCBCTTCEEEEESTTSCCEEEECCCEEET----------TSCEESCBCSTTCEEEE
T ss_pred EEEEEEEEeCCCCE---E-EEEEcCCcCCCCEEEEEcCCCCcEEEEeHHeEcC----------CCCEeeEcCCCCeEEEE
Confidence 56888887666553 2 356788999999999888888 777888888853 57788877 56666777
Q ss_pred ecCCCCcccCCCeEE
Q psy9896 103 AAKDLEKTIAGLNLR 117 (145)
Q Consensus 103 ~a~~Le~~~AGs~l~ 117 (145)
--+ ..+.+|+-|+
T Consensus 74 ~~~--~~~~~~dilR 86 (89)
T 4he6_A 74 KVK--RPLFPYNMMR 86 (89)
T ss_dssp ECS--SCCCTTCEEE
T ss_pred ECC--CCCCCCCEEE
Confidence 533 3457787665
No 29
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1
Probab=90.65 E-value=0.51 Score=34.80 Aligned_cols=78 Identities=21% Similarity=0.124 Sum_probs=54.0
Q ss_pred ceEEEEEEeeeCCcceEEEEEEEccEEcCCCEEEEccCCCc-eeeeeeeccCCCcchhhcccccceeeceeecCcCeEEe
Q psy9896 25 LQATVLEVKAIPGLGTTIDTILVNGTLYEGDTVVLAGTDGP-IVTQIRSLLMPQPMQELRVKNAYVEYKKIKGTQGVKIA 103 (145)
Q Consensus 25 ~~gtVLEvK~~kGlG~tidvIl~~G~L~~GD~Iv~~~~~Gp-i~tkIRaLl~p~Pl~E~R~k~~~~~~~~v~aa~gVkI~ 103 (145)
++=.||.+-.--. |+.+===+-.|+||.|+.+ .|. .+++|+++-+ ..+.++++.|-.-|-|+
T Consensus 35 ~k~~ilp~~~~vF-gpvivGrVe~G~LK~G~~V-----Pg~~~vg~VkSIE~-----------~~e~v~eA~~GdnVai~ 97 (116)
T 1xe1_A 35 GKVVVEEVVNIMG-KDVIIGTVESGMIGVGFKV-----KGPSGIGGIVRIER-----------NREKVEFAIAGDRIGIS 97 (116)
T ss_dssp EEEEEEEEEEETT-EEEEEEEEEEEEEETTCEE-----ECSSCEEEEEEEEE-----------TTEEESEEETTCEEEEE
T ss_pred EEEEEEecCCeEE-CCeeEEEEeEEEEcCCCCc-----CCCceEEEEEEEEE-----------CCcCcCCcCCCCEEEEE
Confidence 4555665323223 6655444668999999998 234 6889999985 57889999988766666
Q ss_pred cCCCC-cccCCCeEEEe
Q psy9896 104 AKDLE-KTIAGLNLRVA 119 (145)
Q Consensus 104 a~~Le-~~~AGs~l~vv 119 (145)
-.|.. ++..|+-+|+-
T Consensus 98 Ikg~~~~I~~GdVLyv~ 114 (116)
T 1xe1_A 98 IEGKIGKVKKGDVLEIY 114 (116)
T ss_dssp EESCCCCCCTTCEEEEE
T ss_pred EECCccccCCCcEEEEe
Confidence 44433 78899988864
No 30
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=89.67 E-value=2.3 Score=38.45 Aligned_cols=83 Identities=20% Similarity=0.162 Sum_probs=62.7
Q ss_pred ceEEEEEEeeeCCcceEEEEEEEccEEcCCCEEEEccCCCceeeeeeeccCCCcchhhcccccceeeceeecCcCeEEec
Q psy9896 25 LQATVLEVKAIPGLGTTIDTILVNGTLYEGDTVVLAGTDGPIVTQIRSLLMPQPMQELRVKNAYVEYKKIKGTQGVKIAA 104 (145)
Q Consensus 25 ~~gtVLEvK~~kGlG~tidvIl~~G~L~~GD~Iv~~~~~Gpi~tkIRaLl~p~Pl~E~R~k~~~~~~~~v~aa~gVkI~a 104 (145)
+.+-|.-+-.++..|..+=+=+++|+|+.||.|..... | ...||..|+... -.++..++++.|-.=+-|.
T Consensus 309 ~~a~VfK~~~d~~~g~~~~~RV~sG~l~~g~~v~~~~~-~-~~~~v~~l~~~~-------g~~~~~v~~~~aGdI~~i~- 378 (693)
T 2xex_A 309 FAALAFKVMTDPYVGKLTFFRVYSGTMTSGSYVKNSTK-G-KRERVGRLLQMH-------ANSRQEIDTVYSGDIAAAV- 378 (693)
T ss_dssp CEEEEEEEEEETTTEEEEEEEEEESEEETTEEEEETTT-T-EEEEECCEEEEC-------SSCEEECSEEETTCEEEEE-
T ss_pred eEEEEEEeeecCCCceEEEEEEEeeeEecCCEEEecCC-C-ceEEeceEEEEe-------CCCceEccccCcCCEEEEe-
Confidence 68889999999999999999999999999999987643 3 223555554321 1356888888887766666
Q ss_pred CCCCcccCCCeEEE
Q psy9896 105 KDLEKTIAGLNLRV 118 (145)
Q Consensus 105 ~~Le~~~AGs~l~v 118 (145)
+|+++..|+.|.-
T Consensus 379 -gl~~~~~GdTl~~ 391 (693)
T 2xex_A 379 -GLKDTGTGDTLCG 391 (693)
T ss_dssp -SCSSCCTTCEEEE
T ss_pred -CcccCccCCEEec
Confidence 5788888987763
No 31
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=89.09 E-value=1.5 Score=38.59 Aligned_cols=82 Identities=11% Similarity=0.013 Sum_probs=53.6
Q ss_pred ceEEEEEEee---eCCcceEEEEEEEccEEcCCCEEEEccCCCceeeeeeeccCCCcchhhcccccceeeceeecCcCeE
Q psy9896 25 LQATVLEVKA---IPGLGTTIDTILVNGTLYEGDTVVLAGTDGPIVTQIRSLLMPQPMQELRVKNAYVEYKKIKGTQGVK 101 (145)
Q Consensus 25 ~~gtVLEvK~---~kGlG~tidvIl~~G~L~~GD~Iv~~~~~Gpi~tkIRaLl~p~Pl~E~R~k~~~~~~~~v~aa~gVk 101 (145)
..|-|.-+.. .+..|..+-+=+++|+|+.||.|.....+. ..||..+.... -.+...++++.|-.=+-
T Consensus 296 ~~~~vfKi~~~~d~~~~G~i~~~RV~sG~l~~g~~v~~~~~~~--~~~v~~i~~~~-------g~~~~~v~~a~aGdiv~ 366 (529)
T 2h5e_A 296 FTGFVFKIQANMDPKHRDRVAFMRVVSGKYEKGMKLRQVRTAK--DVVISDALTFM-------AGDRSHVEEAYPGDILG 366 (529)
T ss_dssp CEEEEEEECSSCCSSSSCCCEEEEEEESCEETTCEEEETTTTE--EEECSCEECCC-------C-----CCEECTTCEEE
T ss_pred eEEEEEEEeeccCcCCCceEEEEEEecCeEcCCCEEEEeeCCC--EEEeceeeEEe-------CCCceEcceECCCCEEE
Confidence 4666766643 356899999999999999999999876432 45777776431 12356667666554444
Q ss_pred EecCCCCcccCCCeEE
Q psy9896 102 IAAKDLEKTIAGLNLR 117 (145)
Q Consensus 102 I~a~~Le~~~AGs~l~ 117 (145)
|. +++.+..|+.|.
T Consensus 367 i~--~l~~~~~Gdtl~ 380 (529)
T 2h5e_A 367 LH--NHGTIQIGDTFT 380 (529)
T ss_dssp EC--CSSCCCTTCEEE
T ss_pred Ee--ccCCCccCCEee
Confidence 44 677787788765
No 32
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=88.50 E-value=1.5 Score=38.50 Aligned_cols=81 Identities=10% Similarity=0.019 Sum_probs=53.2
Q ss_pred ceEEEEEEe--eeC-CcceEEEEEEEccEEcCCCEEEEccCCCceeeeeeeccCCCcchhhcccccceeeceeecCcCeE
Q psy9896 25 LQATVLEVK--AIP-GLGTTIDTILVNGTLYEGDTVVLAGTDGPIVTQIRSLLMPQPMQELRVKNAYVEYKKIKGTQGVK 101 (145)
Q Consensus 25 ~~gtVLEvK--~~k-GlG~tidvIl~~G~L~~GD~Iv~~~~~Gpi~tkIRaLl~p~Pl~E~R~k~~~~~~~~v~aa~gVk 101 (145)
+.|-|.-+. .++ +.|..+=+=+++|+|+.||.+......- ..||..++... -.+...++++.|-.=+-
T Consensus 295 ~~~~VFKi~~~~dp~~~g~l~~~RV~sG~l~~g~~v~~~~~~~--~~rv~~~~~~~-------~~~~~~v~~a~aGdI~~ 365 (528)
T 3tr5_A 295 FSGFVFKIQANMDPGHRDRIAFLRIASGQYQKGMKAYHVRLKK--EIQINNALTFM-------AGKRENAEEAWPGDIIG 365 (528)
T ss_dssp CEEEEEEEEECCC-CCCCEEEEEEEEESCEETTEEEEETTTTE--EEEESSCBCCB-------TTCSSCCSEECTTCEEE
T ss_pred ceeEEEEEecccCccCCceEEEEEEecCeEcCCCEEEecCCCc--eEEEeeeEEEe-------CCCeeECCEECCCCEEE
Confidence 688887766 377 8899999999999999999999875542 23555555321 12455666666544333
Q ss_pred EecCCCCcccCCCeE
Q psy9896 102 IAAKDLEKTIAGLNL 116 (145)
Q Consensus 102 I~a~~Le~~~AGs~l 116 (145)
+. +|.++..|+.|
T Consensus 366 ~~--~l~~~~~GDtl 378 (528)
T 3tr5_A 366 LH--NHGTIQIGDTF 378 (528)
T ss_dssp EE--ESSSCCTTCEE
T ss_pred Ec--CCCCCccCCEE
Confidence 33 45556666554
No 33
>1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1
Probab=87.04 E-value=3.7 Score=29.36 Aligned_cols=83 Identities=19% Similarity=0.212 Sum_probs=60.7
Q ss_pred ceEEEEEEeeeCCcceEEEEEEEccEEcCCCEEEEccCCCce--eeeeeeccCCCcchhhcccccceeeceeecC--cCe
Q psy9896 25 LQATVLEVKAIPGLGTTIDTILVNGTLYEGDTVVLAGTDGPI--VTQIRSLLMPQPMQELRVKNAYVEYKKIKGT--QGV 100 (145)
Q Consensus 25 ~~gtVLEvK~~kGlG~tidvIl~~G~L~~GD~Iv~~~~~Gpi--~tkIRaLl~p~Pl~E~R~k~~~~~~~~v~aa--~gV 100 (145)
.++.|+++......|+.+=+.+.+|.++.+..+-+- .+|.+ .+++.+|-. .-..++++.+- +|+
T Consensus 7 G~AeVr~vF~isk~g~IAGc~V~~G~i~r~~~vRv~-Rd~~vI~eG~i~SLkr-----------~KddV~EV~~G~ECGi 74 (99)
T 1d1n_A 7 GQAEVRQTFKVSKVGTIAGCYVTDGKITRDSKVRLI-RQGIVVYEGEIDSLKR-----------YKDDVREVAQGYECGL 74 (99)
T ss_dssp EEEEECCCCCCSSSCCCEEEEECSSBCCSSSEEEEE-CSSSEEEEEECSEEEC-----------SSSCCSCCBTTCEEEE
T ss_pred EEEEEEEEEEcCCceEEEEEEEEcCEEEcCCeEEEE-ECCEEEEEeEEhhhcc-----------cccccceECCCcEEEE
Confidence 688899999999999999999999999999998774 34433 234444431 22445666554 565
Q ss_pred EEecCCCCcccCCCeEEEecC
Q psy9896 101 KIAAKDLEKTIAGLNLRVAKD 121 (145)
Q Consensus 101 kI~a~~Le~~~AGs~l~vv~~ 121 (145)
.+ .++++...|+.+-.+.-
T Consensus 75 ~l--~~~~dik~GD~Ie~ye~ 93 (99)
T 1d1n_A 75 TI--KNFNDIKEGDVIEAYVM 93 (99)
T ss_dssp EC--TTCSSCSSCSEEEEECC
T ss_pred EE--cCcCCCCCCCEEEEEEE
Confidence 44 57899999999887753
No 34
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=81.20 E-value=19 Score=31.86 Aligned_cols=97 Identities=15% Similarity=0.059 Sum_probs=71.4
Q ss_pred HHHHHHhhcCccCc----ceEEEEEEeeeCC---cceEEEEEEEccEEcCCCEEEEccCCCc--eeeeeeeccCCCcchh
Q psy9896 11 CQTFLKKRLMFKNE----LQATVLEVKAIPG---LGTTIDTILVNGTLYEGDTVVLAGTDGP--IVTQIRSLLMPQPMQE 81 (145)
Q Consensus 11 ~Q~~m~~~L~~~~~----~~gtVLEvK~~kG---lG~tidvIl~~G~L~~GD~Iv~~~~~Gp--i~tkIRaLl~p~Pl~E 81 (145)
....|+..|..... +++.|+++..... .|+.+=+-+.+|+++.|..+-+-- +|. ..++|.+|-.
T Consensus 430 ~~~~~~~~l~~~~~e~~~g~a~v~~~f~~~~~~~~~~iaG~~v~~G~i~~~~~~r~~r-~~~~i~~g~i~slk~------ 502 (537)
T 3izy_P 430 LQEELSSRLPCIVEEHPIGEASILATFSITEGKKKVPVAGCRVQKGQIEKQKKFKLIR-NGHVIWKGSLISLKH------ 502 (537)
T ss_dssp HHHHHSSSSSCSSSCCCSSEEEEEEEESSCSSSCCSCEEEEEECSSEEESSSEEEEES-SSSEEEEEECCCCCC------
T ss_pred HHHHHHhccCCceEEEEEEEEEEcCcEEECCCCccCcEEEEEEEeCeEeeCCeEEEec-CCEEEEEEEEehhcc------
Confidence 45677777776432 7999999988764 789999999999999999888754 565 3566666652
Q ss_pred hcccccceeeceeecCcCeEEecCC-CCcccCCCeEEEe
Q psy9896 82 LRVKNAYVEYKKIKGTQGVKIAAKD-LEKTIAGLNLRVA 119 (145)
Q Consensus 82 ~R~k~~~~~~~~v~aa~gVkI~a~~-Le~~~AGs~l~vv 119 (145)
....++++..-.=+=|+-.+ +++...|+.+-.+
T Consensus 503 -----~k~~v~ev~~g~ecgi~~~~~~~~~~~gd~ie~~ 536 (537)
T 3izy_P 503 -----HKDDTSVVKTGMDCGLSLDEEKIEFKVGDAIICY 536 (537)
T ss_dssp -----SSCCCSEEETTCEEEEESSSSCSSCSCCCEEEEE
T ss_pred -----cCcccceEcCCCEEEEEEcCcccCCCCCCEEEEe
Confidence 34667787766544454446 7899999988764
No 35
>2crv_A IF-2MT, translation initiation factor IF-2; ribosome, beta barrel, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=79.83 E-value=12 Score=27.61 Aligned_cols=83 Identities=16% Similarity=0.162 Sum_probs=59.4
Q ss_pred ceEEEEEEeeeCCcce---EEEEEEEccEEcCCCEEEEccCCCce--eeeeeeccCCCcchhhcccccceeeceeecC--
Q psy9896 25 LQATVLEVKAIPGLGT---TIDTILVNGTLYEGDTVVLAGTDGPI--VTQIRSLLMPQPMQELRVKNAYVEYKKIKGT-- 97 (145)
Q Consensus 25 ~~gtVLEvK~~kGlG~---tidvIl~~G~L~~GD~Iv~~~~~Gpi--~tkIRaLl~p~Pl~E~R~k~~~~~~~~v~aa-- 97 (145)
.++.|+++......|+ .+=+.+.+|.++.+..+-+- .+|-+ .+++.+|-. .-..++++..-
T Consensus 11 G~AeVr~vF~isk~g~~~~IAGC~V~~G~i~r~~~vRvi-Rdg~vI~eG~i~SLkr-----------fKdDVkEV~~G~E 78 (120)
T 2crv_A 11 GEASILATFTVTEGKKKIPVADCRVQKGQLERHKKFKLI-RNGQVIWKGSLTSLKH-----------HKDDISVIKTGMD 78 (120)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEESCEETTSCEEEE-ETTEEEEEECCSEEES-----------SSSCCSEECTTCE
T ss_pred EEEEEeEEEEeCCCCceeEEeEEEEEcCEEEcCCeEEEE-ECCEEEEEeEehhhcc-----------cccccceecCCCE
Confidence 6899999999998898 99999999999999887763 33322 223444331 22446666654
Q ss_pred cCeEEecCCCC-cccCCCeEEEecC
Q psy9896 98 QGVKIAAKDLE-KTIAGLNLRVAKD 121 (145)
Q Consensus 98 ~gVkI~a~~Le-~~~AGs~l~vv~~ 121 (145)
||+.+ .+++ +...|+.+-.+.-
T Consensus 79 CGi~l--~~fniDik~GDiIE~ye~ 101 (120)
T 2crv_A 79 CGLSL--DEEKVEFKPGDQVICYEE 101 (120)
T ss_dssp EEEEC--SCTTSCCCTTEEEEEECC
T ss_pred EEEEE--ccCCCCCCCCCEEEEEEE
Confidence 56544 4789 9999999887753
No 36
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=79.45 E-value=6.9 Score=34.43 Aligned_cols=82 Identities=10% Similarity=0.037 Sum_probs=51.6
Q ss_pred ceEEEEEEeee---CCcceEEEEEEEccEEcCCCEEEEccCCCceeeeeeeccCCCcchhhcccccceeeceeecCcCeE
Q psy9896 25 LQATVLEVKAI---PGLGTTIDTILVNGTLYEGDTVVLAGTDGPIVTQIRSLLMPQPMQELRVKNAYVEYKKIKGTQGVK 101 (145)
Q Consensus 25 ~~gtVLEvK~~---kGlG~tidvIl~~G~L~~GD~Iv~~~~~Gpi~tkIRaLl~p~Pl~E~R~k~~~~~~~~v~aa~gVk 101 (145)
+.+.|.-+..+ +-.|..+=+=+++|+|+.||+|...+.+.. -||..++... -.+...++++.|--=+-
T Consensus 313 ~~a~vfKi~~~~~~~~~Grla~~RV~sG~l~~g~~v~~~~~~~~--~rv~~l~~~~-------g~~~~~v~~a~AGdIva 383 (548)
T 3vqt_A 313 FTGVVFKIQANMDKAHRDRMAFLRICSGTFTRGMRLKHHRTGKD--VTVANATIFM-------AQDRTGVEEAFPGDIIG 383 (548)
T ss_dssp CEEEEEEEECC-------CEEEEEEEESCEETTCEEEETTTTEE--EECTTCEECC-------CSSCCSSCEECTTCEEE
T ss_pred ceEEEEEEEccCCcCCCCeEEEEEEecceecCCCEEEeeccccc--cccchhhhhc-------cccccccCEEecCCEEE
Confidence 56777666555 567888888899999999999998765532 2444444321 12456777777765455
Q ss_pred EecCCCCcccCCCeEE
Q psy9896 102 IAAKDLEKTIAGLNLR 117 (145)
Q Consensus 102 I~a~~Le~~~AGs~l~ 117 (145)
|. +|+++..|++|.
T Consensus 384 i~--gl~~~~~GDTl~ 397 (548)
T 3vqt_A 384 IP--NHGTIKIGDTFT 397 (548)
T ss_dssp EE--CSSCCCTTCEEE
T ss_pred ec--CCccCccCCEec
Confidence 55 567777777553
No 37
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=72.29 E-value=6.6 Score=35.41 Aligned_cols=82 Identities=16% Similarity=0.223 Sum_probs=56.4
Q ss_pred ceEEEEEEeeeCCcceEEEEEEEccEEcCCCEEEEccCCCceeeeeeeccCCCcchhhcccccceeeceeecCcCeEEec
Q psy9896 25 LQATVLEVKAIPGLGTTIDTILVNGTLYEGDTVVLAGTDGPIVTQIRSLLMPQPMQELRVKNAYVEYKKIKGTQGVKIAA 104 (145)
Q Consensus 25 ~~gtVLEvK~~kGlG~tidvIl~~G~L~~GD~Iv~~~~~Gpi~tkIRaLl~p~Pl~E~R~k~~~~~~~~v~aa~gVkI~a 104 (145)
..+-|.-+-.++..|..+=+=+++|+|+.||.|......... +|-.|+... -.....++++.|-.=+-|.
T Consensus 320 l~~~VfK~~~d~~~G~la~~RV~sGtl~~G~~v~~~~~~~~~--~v~~l~~~~-------g~~~~~v~~~~aGdIv~i~- 389 (709)
T 4fn5_A 320 FSSLAFKIATDPFVGTLTFARVYSGVLSSGDSVLNSVKGKKE--RVGRMVQMH-------ANQREEIKEVRAGDIAALI- 389 (709)
T ss_dssp CEEEEEECCCBTTTBCCCEEEEEESCEETTCBCBCTTTCCCC--BCCCEECCC-------SSCCCEESEECTTCEEEEC-
T ss_pred ceEEEEEeecccCCCceEEEeccCCCCCCCCEEEEecCCcEE--eecceeEee-------cceeeEeeeecCCCeeeec-
Confidence 577788888889999998888999999999999765443221 232222211 1256778887766555555
Q ss_pred CCCCcccCCCeEE
Q psy9896 105 KDLEKTIAGLNLR 117 (145)
Q Consensus 105 ~~Le~~~AGs~l~ 117 (145)
||+++..|+.+.
T Consensus 390 -Gl~~~~~gdTl~ 401 (709)
T 4fn5_A 390 -GMKDVTTGDTLC 401 (709)
T ss_dssp -SCSSCCTTCEEE
T ss_pred -CCCcCccCCEec
Confidence 678888888764
No 38
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=64.97 E-value=7.9 Score=25.73 Aligned_cols=52 Identities=12% Similarity=0.171 Sum_probs=37.9
Q ss_pred ceEEEEEEeeeCCcceEEE-----------EEEEccEEcCCCEEEEc---cCCCceeeeeeeccCC
Q psy9896 25 LQATVLEVKAIPGLGTTID-----------TILVNGTLYEGDTVVLA---GTDGPIVTQIRSLLMP 76 (145)
Q Consensus 25 ~~gtVLEvK~~kGlG~tid-----------vIl~~G~L~~GD~Iv~~---~~~Gpi~tkIRaLl~p 76 (145)
.+|||--...+||+|-... .|..+|+|++||.|-+. +..||....|+.+-.|
T Consensus 3 ~~G~Vkwfn~~KGfGFI~~~dg~~dFvH~s~i~~~g~l~~G~~V~F~~~~g~kG~~A~~V~~~~~~ 68 (74)
T 2k5n_A 3 MNGTITTWFKDKGFGFIKDENGDNRYFHVIKVANPDLIKKDAAVTFEPTTNNKGLSAYAVKVVPLE 68 (74)
T ss_dssp EEEEEEEEETTTTEEEEEESSSCEEEEEGGGBSSGGGCCTTCEEEEEEEECSSSEEEEEEEECCSS
T ss_pred cceEEEEEECCCCeEEEecCCCCceEEEHhHcccCCCCCCCCEEEEEEEeCCCCceeEEEEeCCCc
Confidence 3799999999999997653 12224589999998764 5667888888866544
No 39
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=64.47 E-value=41 Score=31.08 Aligned_cols=78 Identities=12% Similarity=0.164 Sum_probs=49.2
Q ss_pred ceEEEEEEeeeCCcce-EEEEEEEccEEcCCCEEEEccCC-----Cc--eeeeeeeccCCCcchhhcccccceeeceeec
Q psy9896 25 LQATVLEVKAIPGLGT-TIDTILVNGTLYEGDTVVLAGTD-----GP--IVTQIRSLLMPQPMQELRVKNAYVEYKKIKG 96 (145)
Q Consensus 25 ~~gtVLEvK~~kGlG~-tidvIl~~G~L~~GD~Iv~~~~~-----Gp--i~tkIRaLl~p~Pl~E~R~k~~~~~~~~v~a 96 (145)
..+-|.-+-.++..|. .+=+=+++|+|+.||.|.+.+.+ +- ...||..|+... -.++..++++.|
T Consensus 378 ~~a~VfK~~~~~~~G~~l~~~RV~sG~l~~g~~v~v~~~~~n~~~~~~~~~~rv~~l~~~~-------g~~~~~v~~~~a 450 (842)
T 1n0u_A 378 LMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKVRIQGPNYVPGKKDDLFIKAIQRVVLMM-------GRFVEPIDDCPA 450 (842)
T ss_dssp CEEEEEEEEEBSSTTCEEEEEEEEESEEETTCEEEEECTTCCSSSCTTEEEEECCEEEEEE-------TTEEEEESEEET
T ss_pred eEEEEEeeeecCCCCceEEEEEEEeeeecCCCEEEeccccccCCCCcccceEEeeeeEeec-------cCcccccceeCC
Confidence 5777877777888995 88899999999999999765432 11 023455554321 124567777766
Q ss_pred CcCeEEecCCCCccc
Q psy9896 97 TQGVKIAAKDLEKTI 111 (145)
Q Consensus 97 a~gVkI~a~~Le~~~ 111 (145)
-.=+-|. ||+++.
T Consensus 451 GdI~ai~--gl~~~~ 463 (842)
T 1n0u_A 451 GNIIGLV--GIDQFL 463 (842)
T ss_dssp TCEEEEE--SCTTTC
T ss_pred CCEEEEE--ccccce
Confidence 5443343 344443
No 40
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1
Probab=51.41 E-value=19 Score=24.38 Aligned_cols=34 Identities=32% Similarity=0.436 Sum_probs=23.1
Q ss_pred eEEEEEEeeeCCcceEEE----------EEEE----------ccEEcCCCEEEE
Q psy9896 26 QATVLEVKAIPGLGTTID----------TILV----------NGTLYEGDTVVL 59 (145)
Q Consensus 26 ~gtVLEvK~~kGlG~tid----------vIl~----------~G~L~~GD~Iv~ 59 (145)
....+..+...|+|.++- +++. .|.|+.||.|+.
T Consensus 15 ~~~~v~l~k~~glG~~i~gg~~~~~~~~~~V~~v~~~s~A~~aG~l~~GD~Il~ 68 (109)
T 1wi4_A 15 AFRVITVTKETGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVS 68 (109)
T ss_dssp TEEEEEECCSSCCCEEEEECSSSSSCSSEEEEEECTTSHHHHHCSCCTTCBEEE
T ss_pred cEEEEEEeCCCccCEEEEeccCCCCCCCEEEEEeCCCChHHHCCCCCCCCEEEE
Confidence 344444455689998876 3443 377999999986
No 41
>4dov_A ORC1, origin recognition complex subunit 1; DNA replication, replication; 1.70A {Mus musculus} PDB: 4dow_A*
Probab=49.51 E-value=14 Score=28.57 Aligned_cols=26 Identities=27% Similarity=0.510 Sum_probs=23.1
Q ss_pred EEcCCCEEEEccCC--CceeeeeeeccC
Q psy9896 50 TLYEGDTVVLAGTD--GPIVTQIRSLLM 75 (145)
Q Consensus 50 ~L~~GD~Iv~~~~~--Gpi~tkIRaLl~ 75 (145)
++++||+|.+.+.+ -|.++||..|+.
T Consensus 38 ~i~vGd~VLI~~~D~~~PyVAki~~lye 65 (163)
T 4dov_A 38 HIKVGQFVLIQGEDNKKPYVAKLIELFQ 65 (163)
T ss_dssp EEETTCEEEECCSSSSCCEEEEEEEEEE
T ss_pred EEeeCCEEEEeCCcccCChhHHHHHHHh
Confidence 78999999999876 899999999943
No 42
>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}
Probab=46.57 E-value=3.9 Score=28.63 Aligned_cols=27 Identities=33% Similarity=0.320 Sum_probs=17.7
Q ss_pred eeeCCcceEEEE----------E------EEccEEcCCCEEEE
Q psy9896 33 KAIPGLGTTIDT----------I------LVNGTLYEGDTVVL 59 (145)
Q Consensus 33 K~~kGlG~tidv----------I------l~~G~L~~GD~Iv~ 59 (145)
|..++||.|+.- | -.+|.|++||.|+-
T Consensus 13 K~~~~LG~tI~~~g~g~~~I~rI~~gg~a~r~g~L~vGD~I~~ 55 (95)
T 3gge_A 13 KSEDSLGLTITDNGVGYAFIKRIKDGGVIDSVKTICVGDHIES 55 (95)
T ss_dssp CCSSCCCEEEECSSSSCCEEEEECTTSHHHHCTTCCTTCEEEE
T ss_pred ECCCCceEEEEcCCCCcEEEEEEcCCChHHhcCCCCCCCEEEE
Confidence 455788888751 1 13467888888865
No 43
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A
Probab=46.20 E-value=31 Score=23.23 Aligned_cols=12 Identities=33% Similarity=0.570 Sum_probs=9.8
Q ss_pred cEEcCCCEEEEc
Q psy9896 49 GTLYEGDTVVLA 60 (145)
Q Consensus 49 G~L~~GD~Iv~~ 60 (145)
|.|++||.|+.-
T Consensus 53 G~L~~GD~Il~I 64 (97)
T 2ejy_A 53 GSLHVGDEILEI 64 (97)
T ss_dssp TCCCTTCEEEEE
T ss_pred CCCCCCCEEEEE
Confidence 679999999874
No 44
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=46.02 E-value=44 Score=21.59 Aligned_cols=47 Identities=30% Similarity=0.523 Sum_probs=29.2
Q ss_pred ceEEEEEEeeeCCcceEE------EEEE------Ecc--EEcCCCEEEEc---cCCCceeeeee
Q psy9896 25 LQATVLEVKAIPGLGTTI------DTIL------VNG--TLYEGDTVVLA---GTDGPIVTQIR 71 (145)
Q Consensus 25 ~~gtVLEvK~~kGlG~ti------dvIl------~~G--~L~~GD~Iv~~---~~~Gpi~tkIR 71 (145)
..|||---..+||+|... ||-+ .+| +|++||.+.+. +..||....|+
T Consensus 6 ~~G~Vk~fn~~kGfGFI~~~~g~~dvFvH~s~i~~~g~~~l~~G~~V~f~~~~~~kG~~A~~V~ 69 (71)
T 3i2z_B 6 IKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKGPSAANVT 69 (71)
T ss_dssp EEEEEEEEETTTTEEEEEETTCCCCEEEEGGGBCCSSCCCCCTTCEEEEEEEEETTEEEEEEEE
T ss_pred ccEEEEEEECCCCcEEEecCCCCccEEEEhHHcccccCcCCCCCCEEEEEEEECCCCCEeEEEE
Confidence 479999999999999754 3332 233 46666665442 34455544444
No 45
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Probab=44.92 E-value=28 Score=23.87 Aligned_cols=28 Identities=32% Similarity=0.570 Sum_probs=19.1
Q ss_pred eeeCCcceEEE-------------EEEE----------ccEEcCCCEEEEc
Q psy9896 33 KAIPGLGTTID-------------TILV----------NGTLYEGDTVVLA 60 (145)
Q Consensus 33 K~~kGlG~tid-------------vIl~----------~G~L~~GD~Iv~~ 60 (145)
|...|+|.++- +++. .|.|+.||.|+.-
T Consensus 32 k~~~glG~~i~gg~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~V 82 (117)
T 2byg_A 32 KGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMV 82 (117)
T ss_dssp CBTTBSSEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEE
T ss_pred eCCCCcCEEEEcccCCCCccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEE
Confidence 55678888876 3332 2668999988763
No 46
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=42.69 E-value=2.3 Score=38.08 Aligned_cols=39 Identities=18% Similarity=0.161 Sum_probs=34.9
Q ss_pred ceEEEEEEeeeCCcceEEEEEEEccEEcCCCEEEEccCC
Q psy9896 25 LQATVLEVKAIPGLGTTIDTILVNGTLYEGDTVVLAGTD 63 (145)
Q Consensus 25 ~~gtVLEvK~~kGlG~tidvIl~~G~L~~GD~Iv~~~~~ 63 (145)
..+-|.-+..++..|..+-+=+++|+|+.||.|.+.+.+
T Consensus 248 ~~~~Vfk~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~ 286 (638)
T 3j25_A 248 LCGNVFKIEYTKKRQRLAYIRLYSGVLHLRDSVRVSEKE 286 (638)
T ss_dssp CCBEEBCCCCCSTTCCCCBCCBSSBCCCSCCCSSSCCCC
T ss_pred hcceeeeeeeeccCceEEEEEEEcCcccCCCccccccCc
Confidence 688899999999999999999999999999999776544
No 47
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=42.09 E-value=38 Score=22.36 Aligned_cols=49 Identities=20% Similarity=0.200 Sum_probs=34.8
Q ss_pred eEEEEEEeeeCCcceEE-----EEEE-------Ecc--EEcCCCEEEEc---cCCCceeeeeeecc
Q psy9896 26 QATVLEVKAIPGLGTTI-----DTIL-------VNG--TLYEGDTVVLA---GTDGPIVTQIRSLL 74 (145)
Q Consensus 26 ~gtVLEvK~~kGlG~ti-----dvIl-------~~G--~L~~GD~Iv~~---~~~Gpi~tkIRaLl 74 (145)
+|||--...+||+|-.. ||-+ .+| +|++||.|-+. +..||....|+.+-
T Consensus 2 ~G~Vkwfn~~KGfGFI~~~dG~DvFvH~s~i~~~~g~~~l~~G~~V~F~~~~g~kG~~A~~V~~~~ 67 (74)
T 2kcm_A 2 KGKVVSYLAAKKYGFIQGDDGESYFLHFSELLDKKDEGKLVKGSMVHFDPTPTPKGLAAKAISLPL 67 (74)
T ss_dssp EEEEEEEETTTTEEEEEETTSCEECCCGGGSSCSGGGTTCCTTSEEEEEEECTTTSCEEEEEECCS
T ss_pred CEEEEEEECCCCEEEEecCCCceEEEEhhhcccCCCCCCCCCCCEEEEEEEECCCCceeEEEEEcC
Confidence 68999999999999775 3322 345 78888887654 45677777776543
No 48
>3jxo_A TRKA-N domain protein; TRKA K+ channel component, structural genomics, PSI-2-2, Pro structure initiative, joint center for structural genomics; 1.55A {Thermotoga SP}
Probab=41.83 E-value=64 Score=20.33 Aligned_cols=28 Identities=11% Similarity=0.176 Sum_probs=21.8
Q ss_pred CCCCcc-cCCCeEEEecCcccHHHHHHHH
Q psy9896 105 KDLEKT-IAGLNLRVAKDQDEIDDLCDEV 132 (145)
Q Consensus 105 ~~Le~~-~AGs~l~vv~~~~e~e~~~~ev 132 (145)
|+=+.. .+|+.++++.+.++++++.+..
T Consensus 55 p~~~~~l~~GD~l~v~g~~~~~~~~~~~~ 83 (86)
T 3jxo_A 55 PRGDTEILSGDKLYVIVSAEAKETVEETL 83 (86)
T ss_dssp CCTTCBCCTTCEEEEEEETTTHHHHHHHH
T ss_pred CCCCCEECCCCEEEEEECHHHHHHHHHHH
Confidence 443555 9999999999999988876643
No 49
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A
Probab=39.88 E-value=52 Score=21.58 Aligned_cols=35 Identities=23% Similarity=0.413 Sum_probs=22.2
Q ss_pred eEEEEEEeeeCCcceEEE-----------EEEE----------ccEEcCCCEEEEc
Q psy9896 26 QATVLEVKAIPGLGTTID-----------TILV----------NGTLYEGDTVVLA 60 (145)
Q Consensus 26 ~gtVLEvK~~kGlG~tid-----------vIl~----------~G~L~~GD~Iv~~ 60 (145)
+...++.|...|+|.++- +++. .|.|+.||.|+.-
T Consensus 11 ~~~~v~l~~~~glG~~i~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~i 66 (106)
T 3axa_A 11 EIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSV 66 (106)
T ss_dssp CEEEEEEECSSSCSEEEEEEECSSCSSEEEEEEEEBTTSHHHHHCCCCTTCEEEEE
T ss_pred eEEEEEECCCCccCEEEEeecCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEE
Confidence 333444477888888873 2222 2568999988763
No 50
>3zv0_C H/ACA ribonucleoprotein complex subunit 4; cell cycle, RNP assembly, X-linked dyskeratosis congenita; 2.80A {Saccharomyces cerevisiae}
Probab=39.31 E-value=24 Score=27.84 Aligned_cols=36 Identities=17% Similarity=0.168 Sum_probs=29.8
Q ss_pred EEEccEEcCCCEEEEccCCCceeeeeeeccCCCcchhhc
Q psy9896 45 ILVNGTLYEGDTVVLAGTDGPIVTQIRSLLMPQPMQELR 83 (145)
Q Consensus 45 Il~~G~L~~GD~Iv~~~~~Gpi~tkIRaLl~p~Pl~E~R 83 (145)
+-++|.++.||.|.+.+.+|-.++.=++.++. .||+
T Consensus 100 ~~v~g~F~~GD~V~V~~~~G~~IAvG~a~~sS---~Ei~ 135 (195)
T 3zv0_C 100 LRYEEGIELYDEIVLITTKGEAIAVAIAQMST---VDLA 135 (195)
T ss_dssp EEEETTCCTTCEEEEECTTCCEEEEEEESSCH---HHHH
T ss_pred EecCCCcCCCCEEEEEcCCCCEEEEEEEcCCH---HHHh
Confidence 44679999999999999999888888888875 4555
No 51
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=38.98 E-value=23 Score=24.12 Aligned_cols=12 Identities=33% Similarity=0.598 Sum_probs=9.7
Q ss_pred cEEcCCCEEEEc
Q psy9896 49 GTLYEGDTVVLA 60 (145)
Q Consensus 49 G~L~~GD~Iv~~ 60 (145)
|.|+.||.|+.-
T Consensus 59 G~l~~GD~Il~I 70 (117)
T 1v62_A 59 GALHPGDHILSI 70 (117)
T ss_dssp TCCCTTCBEEEE
T ss_pred CCCCCCCEEEEE
Confidence 679999998864
No 52
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Probab=38.47 E-value=55 Score=21.00 Aligned_cols=12 Identities=33% Similarity=0.531 Sum_probs=9.0
Q ss_pred cEEcCCCEEEEc
Q psy9896 49 GTLYEGDTVVLA 60 (145)
Q Consensus 49 G~L~~GD~Iv~~ 60 (145)
|.|+.||.|+.-
T Consensus 54 G~L~~GD~I~~i 65 (98)
T 1ihj_A 54 GRLKVGDRILSL 65 (98)
T ss_dssp CSCCTTCEEEEE
T ss_pred CCCCCCCEEEEE
Confidence 448899988763
No 53
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Probab=37.94 E-value=44 Score=22.78 Aligned_cols=35 Identities=17% Similarity=0.409 Sum_probs=23.8
Q ss_pred eEEEEEEeeeCCcceEEE---------EEEEc----------cEEcCCCEEEEc
Q psy9896 26 QATVLEVKAIPGLGTTID---------TILVN----------GTLYEGDTVVLA 60 (145)
Q Consensus 26 ~gtVLEvK~~kGlG~tid---------vIl~~----------G~L~~GD~Iv~~ 60 (145)
...++..+...|+|.++. +++.+ |-|+.||.|+.-
T Consensus 18 ~~~~~~~~~~~glG~~i~gg~~~~~~~i~I~~V~~gspA~~aggL~~GD~Il~I 71 (118)
T 1v6b_A 18 DVRLLRIKKEGSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAI 71 (118)
T ss_dssp CEEEEEEESCSCCCCEEEEBTTSSSCSEEEEECCTTSHHHHHCSSCTTCEEEEE
T ss_pred eEEEEEECCCCccCEEEEcccCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEE
Confidence 345566666778888874 44433 688999998763
No 54
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}
Probab=36.76 E-value=44 Score=22.85 Aligned_cols=12 Identities=25% Similarity=0.343 Sum_probs=9.9
Q ss_pred cEEcCCCEEEEc
Q psy9896 49 GTLYEGDTVVLA 60 (145)
Q Consensus 49 G~L~~GD~Iv~~ 60 (145)
|.|+.||.|+.-
T Consensus 71 G~L~~GD~Il~i 82 (128)
T 2db5_A 71 QRLKENDQILAI 82 (128)
T ss_dssp CCCCSSCBEEEE
T ss_pred CCCCCCCEEEEE
Confidence 669999999864
No 55
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=35.65 E-value=24 Score=22.01 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=14.1
Q ss_pred CcccHHHHHHHHHHHHHHHhhh
Q psy9896 121 DQDEIDDLCDEVARELKSALST 142 (145)
Q Consensus 121 ~~~e~e~~~~ev~~e~~~~~~~ 142 (145)
+..|.+.+|+|+.+|+..-+.+
T Consensus 5 ~~~dle~~KqEIL~E~RkElqK 26 (45)
T 1use_A 5 DYSDLQRVKQELLEEVKKELQK 26 (45)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 4467778887777776554443
No 56
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=35.17 E-value=57 Score=21.62 Aligned_cols=34 Identities=35% Similarity=0.505 Sum_probs=22.1
Q ss_pred eEEEEEEeeeCCcceEEE------------EEEEc----------cEEcCCCEEEEc
Q psy9896 26 QATVLEVKAIPGLGTTID------------TILVN----------GTLYEGDTVVLA 60 (145)
Q Consensus 26 ~gtVLEvK~~kGlG~tid------------vIl~~----------G~L~~GD~Iv~~ 60 (145)
..+.| .|...|+|.++- +++.+ |.|+.||.|+.-
T Consensus 17 ~~v~l-~k~~~glG~~i~~~~~~~~~~~~g~~V~~v~~~spA~~aG~L~~GD~Il~V 72 (108)
T 2d92_A 17 KIVEL-VKDCKGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSV 72 (108)
T ss_dssp EEEEE-EECSSCCSEEEEEEECSSCTTCEEEEEEEECTTCHHHHHTCCCTTCEEEEE
T ss_pred EEEEE-EECCCccCEEEecccccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEE
Confidence 34444 455678998873 22322 779999999864
No 57
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=35.01 E-value=69 Score=20.26 Aligned_cols=46 Identities=28% Similarity=0.471 Sum_probs=28.6
Q ss_pred eEEEEEEeeeCCcceEEEE-----------EEEcc--EEcCCCEEEEc---cCCCceeeeee
Q psy9896 26 QATVLEVKAIPGLGTTIDT-----------ILVNG--TLYEGDTVVLA---GTDGPIVTQIR 71 (145)
Q Consensus 26 ~gtVLEvK~~kGlG~tidv-----------Il~~G--~L~~GD~Iv~~---~~~Gpi~tkIR 71 (145)
+|||--...+||+|-...- |..+| +|++||.+-+. +..||....|+
T Consensus 2 ~G~Vk~fn~~kGfGFI~~~~g~dvFvH~s~i~~~g~~~l~~G~~V~f~~~~~~~G~~A~~V~ 63 (66)
T 1g6p_A 2 RGKVKWFDSKKGYGFITKDEGGDVFVHWSAIEMEGFKTLKEGQVVEFEIQEGKKGPQAAHVK 63 (66)
T ss_dssp CEEEEEEETTTTEEEEEETTSCBCBBCSSSSCCSSCCCCCSSSEEEEEEECSSSCCEEEEEE
T ss_pred cEEEEEEECCCCEEEEecCCCceEEEEhHHccccCCCCCCCCCEEEEEEEECCCCCEEEEEE
Confidence 6899999999999976531 22233 57777776553 23445444444
No 58
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=34.82 E-value=56 Score=22.26 Aligned_cols=12 Identities=33% Similarity=0.659 Sum_probs=9.8
Q ss_pred cEEcCCCEEEEc
Q psy9896 49 GTLYEGDTVVLA 60 (145)
Q Consensus 49 G~L~~GD~Iv~~ 60 (145)
|.|+.||.|+.-
T Consensus 61 G~L~~GD~Il~V 72 (123)
T 1ueq_A 61 GKMETGDVIVYI 72 (123)
T ss_dssp SCCCTTCEEEEE
T ss_pred CCCCCCCEEEEE
Confidence 669999999864
No 59
>3iz5_B 60S ribosomal protein L2 (L2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_B 2zkr_a
Probab=34.09 E-value=57 Score=26.93 Aligned_cols=37 Identities=22% Similarity=0.402 Sum_probs=31.8
Q ss_pred ceEEEEEEeeeCCcceEEEEEEE-ccE--------------EcCCCEEEEcc
Q psy9896 25 LQATVLEVKAIPGLGTTIDTILV-NGT--------------LYEGDTVVLAG 61 (145)
Q Consensus 25 ~~gtVLEvK~~kGlG~tidvIl~-~G~--------------L~~GD~Iv~~~ 61 (145)
..|+|.++..|++.+.-|=.|.| ||. |++||+|..+.
T Consensus 41 i~g~V~~IeyDPnRsA~IAlV~~~dg~~~k~~k~yIlApeGl~vGd~I~sG~ 92 (261)
T 3iz5_B 41 LKGVVTDIIHDPGRGAPLAKVTFRHPFRYKHQKELFVAAEGMYTGQFVYCGR 92 (261)
T ss_dssp SEEEEEEEEEETTTTEEEEEEECCCCSSSCCCCCEEECBTTCBTTCEEEBST
T ss_pred ccEEEEEEEECCCceeEEEEEEecCCCcccceEEEEEeccCCCCCCEEEeCC
Confidence 68999999999999998887776 674 89999998864
No 60
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}
Probab=32.61 E-value=55 Score=22.01 Aligned_cols=14 Identities=29% Similarity=0.510 Sum_probs=10.9
Q ss_pred cEEcCCCEEEEccCCC
Q psy9896 49 GTLYEGDTVVLAGTDG 64 (145)
Q Consensus 49 G~L~~GD~Iv~~~~~G 64 (145)
|.|+.||.|+.- ||
T Consensus 42 G~L~~GD~Il~I--ng 55 (106)
T 2la8_A 42 SKLQRGDIITKF--NG 55 (106)
T ss_dssp TTCCTTCEEEEE--SS
T ss_pred CCCCCCCEEEEE--CC
Confidence 569999999863 55
No 61
>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}
Probab=31.61 E-value=55 Score=21.84 Aligned_cols=12 Identities=33% Similarity=0.512 Sum_probs=9.2
Q ss_pred cEEcCCCEEEEc
Q psy9896 49 GTLYEGDTVVLA 60 (145)
Q Consensus 49 G~L~~GD~Iv~~ 60 (145)
|.|+.||.|+.-
T Consensus 66 G~l~~GD~Il~i 77 (117)
T 2o2t_A 66 GRLKETDQILAI 77 (117)
T ss_dssp CCCCTTCEEEEE
T ss_pred CCCCCCCEEEEE
Confidence 558889988763
No 62
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Probab=31.21 E-value=1.2e+02 Score=22.37 Aligned_cols=12 Identities=25% Similarity=0.332 Sum_probs=9.7
Q ss_pred cEEcCCCEEEEc
Q psy9896 49 GTLYEGDTVVLA 60 (145)
Q Consensus 49 G~L~~GD~Iv~~ 60 (145)
|.|+.||.|+.-
T Consensus 128 G~L~~GD~Il~V 139 (170)
T 3egg_C 128 GRIQVNDLLVEV 139 (170)
T ss_dssp CCCCTTCEEEEE
T ss_pred CCCCCCCEEEEE
Confidence 679999998864
No 63
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}
Probab=30.29 E-value=88 Score=20.39 Aligned_cols=11 Identities=36% Similarity=0.555 Sum_probs=8.0
Q ss_pred cEEcCCCEEEE
Q psy9896 49 GTLYEGDTVVL 59 (145)
Q Consensus 49 G~L~~GD~Iv~ 59 (145)
|-|+.||.|+.
T Consensus 54 ggl~~GD~I~~ 64 (101)
T 2yt7_A 54 GALSIGDRLTA 64 (101)
T ss_dssp SSCCTTCEEEE
T ss_pred CCCCCCCEEEE
Confidence 66777777776
No 64
>1xne_A Hypothetical protein PF0469; GFT structural genomics, protein structure initiative, NESG, PFR14, alpha and beta protein; NMR {Pyrococcus furiosus} SCOP: b.122.1.6
Probab=30.16 E-value=34 Score=24.58 Aligned_cols=32 Identities=13% Similarity=0.265 Sum_probs=22.4
Q ss_pred EEEEEEEccE---EcCCCEEEEccCCCceeeeeeeccC
Q psy9896 41 TIDTILVNGT---LYEGDTVVLAGTDGPIVTQIRSLLM 75 (145)
Q Consensus 41 tidvIl~~G~---L~~GD~Iv~~~~~Gpi~tkIRaLl~ 75 (145)
|+-+=+.|+. +++||+|++.. .+.++|..+-.
T Consensus 22 tiEiR~nd~~~~~i~vGD~I~f~~---~l~~~V~~v~~ 56 (113)
T 1xne_A 22 RIEVRVAYPQLKDIKRGDKIIFND---LIPAEVVEVKK 56 (113)
T ss_dssp CEEECCCTTTTTTCCTTCEEEETT---TEEEEEEEEEE
T ss_pred EEEEEecchhhhccCCCCEEEEcc---ceEEEEEEEEe
Confidence 4444456664 58999999964 77777777663
No 65
>3mxn_B RECQ-mediated genome instability protein 2; bloom syndrome, helicase, RMI, topoisomerase, replication PR replication; 1.55A {Homo sapiens} PDB: 4day_B 3nbh_B
Probab=28.77 E-value=46 Score=25.43 Aligned_cols=29 Identities=24% Similarity=0.296 Sum_probs=19.9
Q ss_pred ceEEEEEEeeeCCcceEEEEEEEccE-----------------EcCCCEEEEc
Q psy9896 25 LQATVLEVKAIPGLGTTIDTILVNGT-----------------LYEGDTVVLA 60 (145)
Q Consensus 25 ~~gtVLEvK~~kGlG~tidvIl~~G~-----------------L~~GD~Iv~~ 60 (145)
.||||+|. + -|. ++|-||| |+.|.|+-+-
T Consensus 63 mQG~VV~~--~--~g~---~~LdDgTG~~~v~g~~~vp~g~p~l~~G~YVMV~ 108 (150)
T 3mxn_B 63 MQGRVVMA--D--RGE---ARLRDPSGDFSVRGLERVPRGRPCLVPGKYVMVM 108 (150)
T ss_dssp EEEEEEEE--E--TTE---EEEEETTEEEEEECGGGSCCCSCCCSTTCEEEEE
T ss_pred EEeEEEEe--C--CCe---EEEECCCceEEEeeccccCCCCcccCCCCEEEEE
Confidence 69999995 2 233 6777775 6677776664
No 66
>1w4s_A Polybromo, polybromo 1 protein; BAH, bromo-associated homology domain, chromatin remodelling, PBAF, SWI/SNF-B, RSC, nuclear protein; 1.55A {Gallus gallus}
Probab=28.55 E-value=38 Score=25.16 Aligned_cols=31 Identities=23% Similarity=0.269 Sum_probs=22.9
Q ss_pred EEccEEcCCCEEEEccCC---CceeeeeeeccCC
Q psy9896 46 LVNGTLYEGDTVVLAGTD---GPIVTQIRSLLMP 76 (145)
Q Consensus 46 l~~G~L~~GD~Iv~~~~~---Gpi~tkIRaLl~p 76 (145)
+-+.++++||.+.+-..+ .|.+++|..|...
T Consensus 22 ~~g~~~~vGD~V~v~~~~~~~~p~I~rI~~i~~~ 55 (174)
T 1w4s_A 22 FKNSMYHVGDYVYVEPAEANLQPHIVCIERLWED 55 (174)
T ss_dssp ----CCCTTCEEEECCSSTTSCCEEEEEEEEEEC
T ss_pred ECCEEEECCCEEEEeCCCCCCCCEEEEEEEEEEc
Confidence 334488999999997754 4789999999874
No 67
>3au7_A TIAS, putative uncharacterized protein; ATP hydrolysis, RNA binding protein; 2.60A {Archaeoglobus fulgidus} PDB: 3amt_A* 3amu_A*
Probab=28.40 E-value=67 Score=27.85 Aligned_cols=38 Identities=24% Similarity=0.224 Sum_probs=31.4
Q ss_pred ceEEEEEE-eeeCCc---------ceEEEEEEEc--c-------EEcCCCEEEEccC
Q psy9896 25 LQATVLEV-KAIPGL---------GTTIDTILVN--G-------TLYEGDTVVLAGT 62 (145)
Q Consensus 25 ~~gtVLEv-K~~kGl---------G~tidvIl~~--G-------~L~~GD~Iv~~~~ 62 (145)
.+|+|.+. +..+|= +.+++++.|. | .|..||.|.++|.
T Consensus 289 v~G~V~~~P~~~~GGHV~f~l~d~~~~i~c~ayeptk~fr~~vr~L~~GD~V~v~G~ 345 (402)
T 3au7_A 289 LRGRVTLEPYDIEGGHVFFEIDTKFGSVKCAAFEPTKQFRNVIRLLRKGDVVEVYGS 345 (402)
T ss_dssp EEEEEEEEEEEETTTEEEEEEEETTEEEEEEECGGGTTHHHHHTTCCTTCEEEEEEE
T ss_pred EEEEEecCcEeccCceEEEEEEcCCCEEEEEEEccchHHHHHHhcCCCCCEEEEEEe
Confidence 68889888 777762 6789999999 7 5789999999874
No 68
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=28.33 E-value=1.2e+02 Score=19.49 Aligned_cols=47 Identities=30% Similarity=0.398 Sum_probs=30.4
Q ss_pred eEEEEEEeeeCCcceEE-----EEEEE------cc--EEcCCCEEEEcc---C--CCceeeeeee
Q psy9896 26 QATVLEVKAIPGLGTTI-----DTILV------NG--TLYEGDTVVLAG---T--DGPIVTQIRS 72 (145)
Q Consensus 26 ~gtVLEvK~~kGlG~ti-----dvIl~------~G--~L~~GD~Iv~~~---~--~Gpi~tkIRa 72 (145)
.|||--...+||+|-.. ||-+. +| +|++||.|-+.- . .||....|+.
T Consensus 3 ~G~Vk~fn~~kGfGFI~~~~g~dvFvH~s~i~~~g~~~l~~G~~V~f~~~~~~~~kG~~A~~V~~ 67 (73)
T 3a0j_A 3 KGRVKWFNAEKGYGFIEREGDTDVFVHYTAINAKGFRTLNEGDIVTFDVEPGRNGKGPQAVNVTV 67 (73)
T ss_dssp EEEEEEEETTTTEEEEECTTSCCEEEEGGGBCSSSCSSCCTTCEEEEEEECCSCCSSSEEEEEEE
T ss_pred CEEEEEEECCCCEEEEecCCCCcEEEEhhhccccCCCCCCCCCEEEEEEEECCCCCCCEEEEEEe
Confidence 68999999999999765 33332 34 577888776542 2 3445555553
No 69
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B
Probab=28.26 E-value=53 Score=23.53 Aligned_cols=25 Identities=24% Similarity=0.460 Sum_probs=16.6
Q ss_pred EcCCCEEEEccCCCceeeeeeeccCCCcc
Q psy9896 51 LYEGDTVVLAGTDGPIVTQIRSLLMPQPM 79 (145)
Q Consensus 51 L~~GD~Iv~~~~~Gpi~tkIRaLl~p~Pl 79 (145)
|+.||.|.+| ...-+++.+-.|.|+
T Consensus 108 L~~GD~I~lG----~~~l~f~~~~~p~P~ 132 (132)
T 3va4_A 108 LRDQELILFA----DFPCQYHRLDVPPPL 132 (132)
T ss_dssp CCTTCEEEET----TEEEEEEECCCCC--
T ss_pred CCCCCEEEEC----CEEEEEEECCCCCCC
Confidence 7788888885 444677777777664
No 70
>3sgr_A Tandem repeat of amyloid-related segment of alpha crystallin residues 90-100 mutant...; amyloid oligomer, beta cylindrin, protein fibril; 2.17A {Homo sapiens}
Probab=28.22 E-value=25 Score=19.10 Aligned_cols=16 Identities=44% Similarity=0.549 Sum_probs=9.0
Q ss_pred EEEEEEccEEcC-CCEE
Q psy9896 42 IDTILVNGTLYE-GDTV 57 (145)
Q Consensus 42 idvIl~~G~L~~-GD~I 57 (145)
-|||-+.|.|++ ||.|
T Consensus 7 gdvievggklkvlgdvi 23 (25)
T 3sgr_A 7 GDVIEVGGKLKVLGDVI 23 (26)
T ss_dssp EEEEEETTEEEEEEEEE
T ss_pred eeeeeeCcEEEEeeeEE
Confidence 356666666664 4444
No 71
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold shock domain, ssDNA binding, DNA B protein; 2.80A {Homo sapiens}
Probab=27.74 E-value=97 Score=23.14 Aligned_cols=49 Identities=14% Similarity=0.053 Sum_probs=33.3
Q ss_pred ceEEEEEEeeeCCcceEEE------EEE------EccEEcCCCEEEEc------cCCCceeeeeeec
Q psy9896 25 LQATVLEVKAIPGLGTTID------TIL------VNGTLYEGDTVVLA------GTDGPIVTQIRSL 73 (145)
Q Consensus 25 ~~gtVLEvK~~kGlG~tid------vIl------~~G~L~~GD~Iv~~------~~~Gpi~tkIRaL 73 (145)
.+|+|--...+||+|.... |-+ -+.+|++||.|-+. +..|+....|+.+
T Consensus 63 ~~GtVKwFn~~KGfGFI~~ddGg~DVFVH~Sai~~~~~L~eGq~V~Fev~~~~~~~~g~qA~nV~~~ 129 (147)
T 3aqq_A 63 YKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGEYVPVEGDEVTYKMCSIPPKNEKLQAVEVVIT 129 (147)
T ss_dssp EEEEEEEEETTTTEEEEEESSSCSCEEEEGGGEESSBCCCTTCEEEEEEEEC--CCSCEEEEEEEEE
T ss_pred cceEEEEEeCCCCeEEeccCCCCccEEEEeeeecCCCcCCCCCEEEEEEEeccCCCCCceEEEEEeC
Confidence 5899999999999998753 211 12378888887432 2345666666655
No 72
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Probab=27.38 E-value=54 Score=20.79 Aligned_cols=12 Identities=33% Similarity=0.545 Sum_probs=9.2
Q ss_pred cEEcCCCEEEEc
Q psy9896 49 GTLYEGDTVVLA 60 (145)
Q Consensus 49 G~L~~GD~Iv~~ 60 (145)
|.|+.||.|+.-
T Consensus 50 G~l~~GD~I~~v 61 (94)
T 2fe5_A 50 GRLQIGDRLLAV 61 (94)
T ss_dssp CCCCTTCEEEEE
T ss_pred CCCCCCCEEEEE
Confidence 568899988763
No 73
>2z0t_A Putative uncharacterized protein PH0355; alpha/beta protein, RNA binding protein, structural genomics, NPPSFA; 1.80A {Pyrococcus horikoshii} PDB: 1s04_A
Probab=26.91 E-value=34 Score=24.49 Aligned_cols=52 Identities=15% Similarity=0.429 Sum_probs=33.6
Q ss_pred eEEEEEEEccE---EcCCCEEEEccCCCceeeeeeeccCCCcchhhcccccceeeceeecCcCeEEecC
Q psy9896 40 TTIDTILVNGT---LYEGDTVVLAGTDGPIVTQIRSLLMPQPMQELRVKNAYVEYKKIKGTQGVKIAAK 105 (145)
Q Consensus 40 ~tidvIl~~G~---L~~GD~Iv~~~~~Gpi~tkIRaLl~p~Pl~E~R~k~~~~~~~~v~aa~gVkI~a~ 105 (145)
.|+.+=+.|+. +++||+|++. ...+.++|..+- .|.+..+..-+.|.+-.+|
T Consensus 20 KtiEiRlnd~k~~~ikvGD~I~f~--~~~l~~~V~~v~------------~Y~sF~~ll~~e~~~~~~p 74 (109)
T 2z0t_A 20 KKIEGRLYDEKRRQIKPGDIIIFE--GGKLKVKVKGIR------------VYSSFKEMLEKEGIENVLP 74 (109)
T ss_dssp CCEEEEECCTTGGGCCTTCEEEEG--GGTEEEEEEEEE------------EESCHHHHHHHHCHHHHST
T ss_pred CEEEEEecchhhhcCCCCCEEEEC--CCEEEEEEEEEE------------ccCCHHHHHHhcChhhcCC
Confidence 56666778884 5899999992 227888888876 3555555544444433333
No 74
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}
Probab=26.80 E-value=56 Score=21.56 Aligned_cols=12 Identities=33% Similarity=0.587 Sum_probs=9.3
Q ss_pred cEEcCCCEEEEc
Q psy9896 49 GTLYEGDTVVLA 60 (145)
Q Consensus 49 G~L~~GD~Iv~~ 60 (145)
|-|+.||.|+.-
T Consensus 52 ~gL~~GD~Il~I 63 (103)
T 2dc2_A 52 GGLHVGDAILAV 63 (103)
T ss_dssp TCCCSSEEEEEE
T ss_pred CCCCCCCEEEEE
Confidence 678888888763
No 75
>1p3h_A 10 kDa chaperonin; beta barrel, acidic cluster, flexible loop, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: b.35.1.1 PDB: 1hx5_A 1lep_A 1p82_A 1p83_A
Probab=26.59 E-value=38 Score=23.89 Aligned_cols=36 Identities=39% Similarity=0.566 Sum_probs=26.0
Q ss_pred ceEEEEEEeeeCCcceEEEEEEEcc------EEcCCCEEEEccCCCceeeeee
Q psy9896 25 LQATVLEVKAIPGLGTTIDTILVNG------TLYEGDTVVLAGTDGPIVTQIR 71 (145)
Q Consensus 25 ~~gtVLEvK~~kGlG~tidvIl~~G------~L~~GD~Iv~~~~~Gpi~tkIR 71 (145)
.+|+|+-| |-|.. ..|| .+++||++.++...| |.|+
T Consensus 38 ~~G~VvAV----G~G~~----~~~G~~~~p~~VkvGD~Vlf~ky~G---tevk 79 (99)
T 1p3h_A 38 QEGTVVAV----GPGRW----DEDGEKRIPLDVAEGDTVIYSKYGG---TEIK 79 (99)
T ss_dssp EEEEEEEE----CCCEE----CSSSSCEECCSCCTTCEEEEECTTC---EEEE
T ss_pred ceEEEEEE----CCCcC----cCCCCEEEccccCCCCEEEECCcCC---eEEE
Confidence 57888877 44432 3477 589999999988777 6665
No 76
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*
Probab=26.14 E-value=74 Score=20.97 Aligned_cols=10 Identities=30% Similarity=0.385 Sum_probs=7.7
Q ss_pred EcCCCEEEEc
Q psy9896 51 LYEGDTVVLA 60 (145)
Q Consensus 51 L~~GD~Iv~~ 60 (145)
|+.||.|+.-
T Consensus 63 l~~GD~I~~v 72 (109)
T 1q3o_A 63 LRMGDFLIEV 72 (109)
T ss_dssp CCTTCEEEEE
T ss_pred CCCCCEEEEE
Confidence 8888888763
No 77
>1dgw_Y Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_Y
Probab=25.92 E-value=59 Score=22.51 Aligned_cols=17 Identities=35% Similarity=0.491 Sum_probs=14.0
Q ss_pred EccEEcCCCEEEEccCC
Q psy9896 47 VNGTLYEGDTVVLAGTD 63 (145)
Q Consensus 47 ~~G~L~~GD~Iv~~~~~ 63 (145)
++|.|++||.+|+--.+
T Consensus 6 ~~~~l~~G~v~vVPq~~ 22 (93)
T 1dgw_Y 6 YAATLSEGDIIVIPSSF 22 (93)
T ss_dssp EEEEECTTCEEEECTTC
T ss_pred hhceecCCcEEEECCCC
Confidence 68999999999996433
No 78
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=25.61 E-value=57 Score=20.84 Aligned_cols=17 Identities=18% Similarity=0.157 Sum_probs=14.7
Q ss_pred eEEEEEEeeeCCcceEE
Q psy9896 26 QATVLEVKAIPGLGTTI 42 (145)
Q Consensus 26 ~gtVLEvK~~kGlG~ti 42 (145)
+|||--...+||+|-..
T Consensus 3 ~G~Vk~fn~~kGfGFI~ 19 (67)
T 3cam_A 3 TGIVKWFNDAKGFGFIT 19 (67)
T ss_dssp EEEEEEEETTTTEEEEE
T ss_pred CEEEEEEECCCCeEEEe
Confidence 68999999999999764
No 79
>3mlq_E Transcription-repair coupling factor; tudor, transferase-transcription complex; 2.91A {Thermus thermophilus}
Probab=25.23 E-value=15 Score=24.18 Aligned_cols=24 Identities=29% Similarity=0.374 Sum_probs=6.1
Q ss_pred cEEcCCCEEEEccCCCceeeeeeeccC
Q psy9896 49 GTLYEGDTVVLAGTDGPIVTQIRSLLM 75 (145)
Q Consensus 49 G~L~~GD~Iv~~~~~Gpi~tkIRaLl~ 75 (145)
|.|++||+||-. ..| ++++..|-+
T Consensus 1 ~~l~~GD~VVh~-~hG--iG~~~gi~~ 24 (71)
T 3mlq_E 1 GPHMPGDYLIHP-EHG--VGQYLGLET 24 (71)
T ss_dssp ------------------CEEEEEEEE
T ss_pred CcCCCCCEEEEC-CCe--eEEEeEEEE
Confidence 789999999974 344 577777753
No 80
>3nx6_A 10KDA chaperonin; bacterial blight, XOO4289, groes, xanthomonas oryzae PV. ORY KACC10331, chaperone; 1.97A {Xanthomonas oryzae PV} SCOP: b.35.1.0
Probab=24.79 E-value=43 Score=23.44 Aligned_cols=36 Identities=28% Similarity=0.518 Sum_probs=24.3
Q ss_pred ceEEEEEEeeeCCcceEEEEEEEcc-----EEcCCCEEEEccCCCceeeeee
Q psy9896 25 LQATVLEVKAIPGLGTTIDTILVNG-----TLYEGDTVVLAGTDGPIVTQIR 71 (145)
Q Consensus 25 ~~gtVLEvK~~kGlG~tidvIl~~G-----~L~~GD~Iv~~~~~Gpi~tkIR 71 (145)
.+|+|+.| |-|.. ..|| .+++||++.+....| |.|+
T Consensus 36 ~~G~VvAV----G~G~~----~~~G~~~p~~VkvGD~Vl~~ky~G---tevk 76 (95)
T 3nx6_A 36 TKGEVVAI----GAGKP----LDNGSLHAPVVKVGDKVIYGQYAG---SSYK 76 (95)
T ss_dssp EEEEEEEE----CSCEE----CTTSCEECCSCCTTCEEEECTTCS---EEEE
T ss_pred cccEEEEE----CCCeE----CCCCCEEccccCCCCEEEECCcCC---eEEE
Confidence 46777765 33333 2366 479999999988777 6665
No 81
>1vmf_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, unknown function; HET: EPE; 1.46A {Bacillus halodurans} SCOP: d.273.1.1
Probab=24.23 E-value=62 Score=24.26 Aligned_cols=29 Identities=31% Similarity=0.500 Sum_probs=25.8
Q ss_pred cceEEEEEEEccEEcCC--CEEEEccCCCce
Q psy9896 38 LGTTIDTILVNGTLYEG--DTVVLAGTDGPI 66 (145)
Q Consensus 38 lG~tidvIl~~G~L~~G--D~Iv~~~~~Gpi 66 (145)
+|+...+.+.||.|..| --|.+|-++||-
T Consensus 103 ~G~S~tiPV~~GrL~LGtWQgIyl~E~dgpr 133 (145)
T 1vmf_A 103 VGHAQTLIISEGRLVLGTWQGVYFCEFDGPR 133 (145)
T ss_dssp HCSEEEEEEETTEECCCTTEEEEEEESSCCC
T ss_pred hCCeEEEEEECCEEccCCCceEEEEECcCCC
Confidence 58999999999999999 579999999874
No 82
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=24.15 E-value=44 Score=26.30 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=21.0
Q ss_pred eEEEEEEEc---cEEcCCCEEEEccCC
Q psy9896 40 TTIDTILVN---GTLYEGDTVVLAGTD 63 (145)
Q Consensus 40 ~tidvIl~~---G~L~~GD~Iv~~~~~ 63 (145)
.++||++.+ +..+.||.|.+.|..
T Consensus 211 rsi~v~l~~dLvd~~~PGDrV~vtGI~ 237 (268)
T 2vl6_A 211 RQLEIILEDDLVDSARPGDRVKVTGIL 237 (268)
T ss_dssp CEEEEEEEGGGTTSSCTTCEEEEEEEE
T ss_pred cEEEEEEccCccCcccCCCEEEEEEEE
Confidence 479999999 899999999998654
No 83
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=24.07 E-value=49 Score=26.36 Aligned_cols=25 Identities=36% Similarity=0.454 Sum_probs=21.8
Q ss_pred eEEEEEEEc---cEEcCCCEEEEccCCC
Q psy9896 40 TTIDTILVN---GTLYEGDTVVLAGTDG 64 (145)
Q Consensus 40 ~tidvIl~~---G~L~~GD~Iv~~~~~G 64 (145)
.++||++.+ +..+.||.|.+.|..-
T Consensus 198 rsi~V~l~~dLvd~~~PGDrV~vtGI~~ 225 (279)
T 1ltl_A 198 RQITVVLEDDLVDTLTPGDIVRVTGTLR 225 (279)
T ss_dssp CEEEEEEEGGGTTCCCTTCEEEEEEEEE
T ss_pred eEEEEEEcccccCccCCCCEEEEEEEEE
Confidence 479999999 8999999999987653
No 84
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=23.96 E-value=1.4e+02 Score=18.71 Aligned_cols=46 Identities=28% Similarity=0.421 Sum_probs=29.0
Q ss_pred eEEEEEEeeeCCcceEE-----EEEEE------cc--EEcCCCEEEEc---cCCCceeeeee
Q psy9896 26 QATVLEVKAIPGLGTTI-----DTILV------NG--TLYEGDTVVLA---GTDGPIVTQIR 71 (145)
Q Consensus 26 ~gtVLEvK~~kGlG~ti-----dvIl~------~G--~L~~GD~Iv~~---~~~Gpi~tkIR 71 (145)
+|||--...+||+|-.. ||-+. +| +|++||.+-+. +..||....|+
T Consensus 3 ~G~Vk~fn~~kGfGFI~~~~g~dvFvH~s~i~~~g~~~l~~G~~V~f~~~~~~kG~~A~~V~ 64 (66)
T 1c9o_A 3 RGKVKWFNNEKGYGFIEVEGGSDVFVHFTAIQGEGFKTLEEGQEVSFEIVQGNRGPQAANVV 64 (66)
T ss_dssp EEEEEEEETTTTEEEEEETTEEEEEEEGGGBCSSSCCCCCTTCEEEEEEEEETTEEEEEEEE
T ss_pred ceEEEEEECCCCeEEEecCCCccEEEEHHHccccCCCCCCCCCEEEEEEEECCCCcEeEEEE
Confidence 68999999999999764 44332 34 47777776653 23444444443
No 85
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=23.18 E-value=94 Score=21.04 Aligned_cols=12 Identities=25% Similarity=0.443 Sum_probs=8.9
Q ss_pred cEEcCCCEEEEc
Q psy9896 49 GTLYEGDTVVLA 60 (145)
Q Consensus 49 G~L~~GD~Iv~~ 60 (145)
|.|+.||.|+.-
T Consensus 68 G~L~~GD~Il~I 79 (124)
T 2daz_A 68 GRMRIGDELLEI 79 (124)
T ss_dssp TCCCTTCEECEE
T ss_pred CCCCCCCEEEEE
Confidence 568888888763
No 86
>2cu5_A Conserved hypothetical protein TT1486; thermus thermophilus HB8, ST genomics, riken structural genomics/proteomics initiative; 1.84A {Thermus thermophilus}
Probab=23.01 E-value=1.3e+02 Score=21.99 Aligned_cols=30 Identities=37% Similarity=0.480 Sum_probs=26.7
Q ss_pred cceEEEEEEEccEEcCC--CEEEEccCCCcee
Q psy9896 38 LGTTIDTILVNGTLYEG--DTVVLAGTDGPIV 67 (145)
Q Consensus 38 lG~tidvIl~~G~L~~G--D~Iv~~~~~Gpi~ 67 (145)
+|+...+.+.||.|..| --|.+|-++||-.
T Consensus 90 ~G~s~tiPV~~G~L~LGtWQ~Iyl~E~dg~r~ 121 (129)
T 2cu5_A 90 TGVHLLLLAEKGRLRLGRWQQVFLAEFDGPRV 121 (129)
T ss_dssp HCSEEEEEEETTEECCCTTCEEEEEESSCSEE
T ss_pred hCCeEEEEEECCEECcCCCcEEEEEECCCCce
Confidence 58999999999999999 6799999999754
No 87
>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A
Probab=22.93 E-value=90 Score=19.45 Aligned_cols=12 Identities=33% Similarity=0.587 Sum_probs=9.7
Q ss_pred cEEcCCCEEEEc
Q psy9896 49 GTLYEGDTVVLA 60 (145)
Q Consensus 49 G~L~~GD~Iv~~ 60 (145)
+-|+.||.|+.-
T Consensus 45 agl~~GD~I~~v 56 (87)
T 4e34_A 45 GGLHVGDAILAV 56 (87)
T ss_dssp SCCCTTEEEEEE
T ss_pred CCCCCCCEEEEE
Confidence 689999988763
No 88
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}
Probab=22.58 E-value=1.4e+02 Score=18.42 Aligned_cols=12 Identities=33% Similarity=0.626 Sum_probs=9.1
Q ss_pred cEEcCCCEEEEc
Q psy9896 49 GTLYEGDTVVLA 60 (145)
Q Consensus 49 G~L~~GD~Iv~~ 60 (145)
|.|+.||.|+.-
T Consensus 42 G~l~~GD~I~~v 53 (85)
T 2i04_A 42 GKMETGDVIVSV 53 (85)
T ss_dssp CCCCTTCEEEEE
T ss_pred CCCCCCCEEEEE
Confidence 458888888764
No 89
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=21.85 E-value=43 Score=22.54 Aligned_cols=35 Identities=26% Similarity=0.488 Sum_probs=20.1
Q ss_pred ceEEEEEEeeeCCcceEEE---------EEEE----------ccEEcCCCEEEE
Q psy9896 25 LQATVLEVKAIPGLGTTID---------TILV----------NGTLYEGDTVVL 59 (145)
Q Consensus 25 ~~gtVLEvK~~kGlG~tid---------vIl~----------~G~L~~GD~Iv~ 59 (145)
...++|.-+...|+|.++- +++. .|.|+.||.|+.
T Consensus 16 ~~~v~l~~~~~~~lG~~i~g~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~ 69 (119)
T 1x6d_A 16 IHVTILHKEEGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLS 69 (119)
T ss_dssp EEEEEEECCTTSCCSEEEECCSSSSCSSCEEEEECSSSHHHHHTSSCTTCBCCE
T ss_pred eEEEEEEeCCCCccCEEEeCCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEE
Confidence 3444444445678887762 2222 255888887765
No 90
>2kaf_A Non-structural protein 3; SARS-unique domain-C, automation in structure determination, viral protein; NMR {Sars coronavirus}
Probab=21.77 E-value=41 Score=22.20 Aligned_cols=21 Identities=24% Similarity=0.453 Sum_probs=15.9
Q ss_pred EEcCCCEEEEccCCCceeeee
Q psy9896 50 TLYEGDTVVLAGTDGPIVTQI 70 (145)
Q Consensus 50 ~L~~GD~Iv~~~~~Gpi~tkI 70 (145)
-||.||+||.-+...|+.-.+
T Consensus 32 flkRGdkivyht~~~~~efh~ 52 (67)
T 2kaf_A 32 FLKRGDKIVYHTLESPVEFHL 52 (67)
T ss_dssp EEEETTEEEEECSSSSCCEEE
T ss_pred hhhcCCeeeeeecCCceEEEe
Confidence 489999999988776665443
No 91
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A
Probab=21.44 E-value=1.2e+02 Score=20.50 Aligned_cols=12 Identities=33% Similarity=0.520 Sum_probs=9.1
Q ss_pred cEEcCCCEEEEc
Q psy9896 49 GTLYEGDTVVLA 60 (145)
Q Consensus 49 G~L~~GD~Iv~~ 60 (145)
|.|+.||.|+.-
T Consensus 67 G~L~~GD~I~~I 78 (114)
T 2gzv_A 67 GTVAAGDEITGV 78 (114)
T ss_dssp CCCCTTCEEEEE
T ss_pred CCCCCCCEEEEE
Confidence 558889988763
No 92
>2zwn_A Two-domain type laccase; muticopper oxidase, oxidoreductase; 1.70A {Metagenomes}
Probab=21.37 E-value=97 Score=24.99 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=17.3
Q ss_pred cceEEEEEEEccEE-------cCCCEEEE
Q psy9896 38 LGTTIDTILVNGTL-------YEGDTVVL 59 (145)
Q Consensus 38 lG~tidvIl~~G~L-------~~GD~Iv~ 59 (145)
-|.+.+++.+||.. ++||++.+
T Consensus 19 ~g~~~~~~~~NG~~pGP~I~v~~Gd~v~v 47 (339)
T 2zwn_A 19 PGLDYKVFGFNGQVPGPLIHVQEGDDVIV 47 (339)
T ss_dssp TTEEEEEEEETTBSSCCEEEEETTCEEEE
T ss_pred CCcEEEEEEECCccCCCeEEEECCCEEEE
Confidence 47789999999984 66777666
No 93
>1vct_A Hypothetical protein PH0236; helix rich, structural genomics, riken structural genomics/P initiative, RSGI, NPPSFA; 1.85A {Pyrococcus horikoshii} SCOP: a.7.12.1 d.286.1.1 PDB: 2bkn_A 2bko_A 2bkp_A
Probab=21.32 E-value=1e+02 Score=23.12 Aligned_cols=58 Identities=17% Similarity=0.071 Sum_probs=34.9
Q ss_pred cCCCcchhhccccc-ceeeceeecCcCeEEecCCCCcc-cCCCeEEEecCcccHHHHHHHH
Q psy9896 74 LMPQPMQELRVKNA-YVEYKKIKGTQGVKIAAKDLEKT-IAGLNLRVAKDQDEIDDLCDEV 132 (145)
Q Consensus 74 l~p~Pl~E~R~k~~-~~~~~~v~aa~gVkI~a~~Le~~-~AGs~l~vv~~~~e~e~~~~ev 132 (145)
+.-++++|+....+ ...+--+.- -|--+..|+=+.. .+|+.++++.+.++++++.+..
T Consensus 134 ~~GktL~el~l~~~~gv~IvaI~R-~g~~i~~P~~dt~L~~GD~Liv~g~~~~i~~~~~~l 193 (205)
T 1vct_A 134 IVGKTLGELDLATNTGVWIIAVRR-GKRWIFGPNENFKIRAGDVLIGRGTRTSIDHLKEIA 193 (205)
T ss_dssp TTTCBHHHHCHHHHHSCEEEEEEE-TTEEEESCCTTCBCCTTCEEEEEECHHHHHHHHHHH
T ss_pred cCCCCHHHcCCCccCCEEEEEEEE-CCEEEeCCCCCCEECCCCEEEEEECHHHHHHHHHHh
Confidence 44567788764332 233333332 2323334444555 9999999999988887776654
No 94
>1q7h_A Conserved hypothetical protein; structural genomics, MCSG, PSI, PR structure initiative; 2.10A {Thermoplasma acidophilum dsm 1728} SCOP: b.122.1.1 d.17.6.2
Probab=20.50 E-value=1.2e+02 Score=21.64 Aligned_cols=36 Identities=11% Similarity=0.260 Sum_probs=29.0
Q ss_pred EEEccEEcCCCEEEEccCCCceeeeeeeccCCCcchhhc
Q psy9896 45 ILVNGTLYEGDTVVLAGTDGPIVTQIRSLLMPQPMQELR 83 (145)
Q Consensus 45 Il~~G~L~~GD~Iv~~~~~Gpi~tkIRaLl~p~Pl~E~R 83 (145)
+=.+|.++.||.+++...+|-..+.=++.+.. .||+
T Consensus 95 ~~~~~~~~~gd~V~V~~~~g~~ia~G~~~~ss---~e~~ 130 (153)
T 1q7h_A 95 VSMDDSIRKGDMIFVKSSKGYFIAVGMAEMDA---GEVM 130 (153)
T ss_dssp EEECTTCCTTCEEEEEETTSCEEEEEEESSCH---HHHH
T ss_pred CcccCceeCCCEEEEEECCCCEEEEEEEecCH---HHHH
Confidence 34578999999999999999888888888864 4555
No 95
>1oru_A YUAD protein; structural genomics, cytosolic hypothetical protein, PSI, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.80A {Bacillus subtilis} SCOP: b.58.1.2
Probab=20.24 E-value=52 Score=25.00 Aligned_cols=19 Identities=21% Similarity=0.447 Sum_probs=15.1
Q ss_pred EEEEccEEcCCCEEEEccC
Q psy9896 44 TILVNGTLYEGDTVVLAGT 62 (145)
Q Consensus 44 vIl~~G~L~~GD~Iv~~~~ 62 (145)
.++..|++++||.|.+-..
T Consensus 166 rVl~~G~I~~GD~v~l~~~ 184 (195)
T 1oru_A 166 IVERPGAVYTGDEIEVHSY 184 (195)
T ss_dssp EEEECEEEETTCEEEEEEE
T ss_pred EEecCceEcCCCEEEEEeC
Confidence 4557899999999988543
Done!