RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9896
(145 letters)
>d1g7sa1 b.43.3.1 (A:228-328) Initiation factor IF2/eIF5b, domains 2
and 4 {Archaeon Methanobacterium thermoautotrophicum
[TaxId: 145262]}
Length = 101
Score = 99.8 bits (249), Expect = 6e-29
Identities = 35/94 (37%), Positives = 58/94 (61%), Gaps = 1/94 (1%)
Query: 26 QATVLEVKAIPGLGTTIDTILVNGTLYEGDTVVLAGTDGPIVTQIRSLLMPQPMQELR-V 84
+ T+LEVK GLG TID ++ +G L + DT+ + + I T+IRSLL P+P++E+R
Sbjct: 6 RGTILEVKEETGLGMTIDAVIYDGILRKDDTIAMMTSKDVISTRIRSLLKPRPLEEMRES 65
Query: 85 KNAYVEYKKIKGTQGVKIAAKDLEKTIAGLNLRV 118
+ + + ++ G+KI A ++ +AG LRV
Sbjct: 66 RKKFQKVDEVVAAAGIKIVAPGIDDVMAGSPLRV 99
>d1d2ea1 b.43.3.1 (A:251-348) Elongation factor Tu (EF-Tu), domain
2 {Cow (Bos taurus), mitochondrial [TaxId: 9913]}
Length = 98
Score = 29.8 bits (67), Expect = 0.042
Identities = 16/47 (34%), Positives = 21/47 (44%)
Query: 29 VLEVKAIPGLGTTIDTILVNGTLYEGDTVVLAGTDGPIVTQIRSLLM 75
V V +IPG GT + L G L +GD G I T + + M
Sbjct: 12 VESVYSIPGRGTVVTGTLERGILKKGDECEFLGHSKNIRTVVTGIEM 58
>d1efca1 b.43.3.1 (A:205-296) Elongation factor Tu (EF-Tu), domain
2 {Escherichia coli [TaxId: 562]}
Length = 92
Score = 29.3 bits (66), Expect = 0.055
Identities = 10/47 (21%), Positives = 20/47 (42%)
Query: 29 VLEVKAIPGLGTTIDTILVNGTLYEGDTVVLAGTDGPIVTQIRSLLM 75
+ +V +I G GT + + G + G+ V + G + + M
Sbjct: 10 IEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEM 56
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 27.7 bits (60), Expect = 0.40
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 119 AKDQDEIDDLCDEVARELKS 138
AK+ I++L E++R + S
Sbjct: 148 AKNAININELFIEISRRIPS 167
>d2cmza1 e.76.1.2 (A:1-409) Spike glycoprotein {Vesicular stomatitis
indiana virus [TaxId: 11277]}
Length = 409
Score = 25.6 bits (56), Expect = 2.8
Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 33 KAIPGLGTTIDTILVNGTLYEGDTVVLA-GTDGPIVTQIRSLL 74
PG G ++NGTL +T + PI++++ ++
Sbjct: 307 PKNPGTGPAF--TIINGTLKYFETRYIRVDIAAPILSRMVGMI 347
>d1tjoa_ a.25.1.1 (A:) Dodecameric ferritin homolog {Archaeon
Halobacterium salinarum [TaxId: 2242]}
Length = 180
Score = 25.1 bits (54), Expect = 3.4
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 85 KNAYVEYKKIKGTQGVKIAAKDLEKTIAGLNLRVA 119
KNA +++G+ +++ A E+ + LN +A
Sbjct: 4 KNARATAGEVEGSDALRMDADRAEQCVDALNADLA 38
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin
(Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 24.9 bits (53), Expect = 3.8
Identities = 5/20 (25%), Positives = 13/20 (65%)
Query: 119 AKDQDEIDDLCDEVARELKS 138
AK + +D + ++ RE+++
Sbjct: 148 AKTRANVDKVFFDLMREIRA 167
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 24.7 bits (52), Expect = 4.1
Identities = 4/19 (21%), Positives = 11/19 (57%)
Query: 119 AKDQDEIDDLCDEVARELK 137
A Q + +L + + R+++
Sbjct: 150 AAVQHNVKELFEGIVRQVR 168
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 24.1 bits (51), Expect = 6.1
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 119 AKDQDEIDDLCDEVARELKSA 139
AK + +D+L E+ R++ A
Sbjct: 147 AKSKTMVDELFAEIVRQMNYA 167
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 24.3 bits (51), Expect = 6.5
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 119 AKDQDEIDDLCDEVARELKS 138
A +D+ + + LKS
Sbjct: 148 ATKGTGLDEAMEWLVETLKS 167
>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas
putida [TaxId: 303]}
Length = 133
Score = 24.1 bits (51), Expect = 6.8
Identities = 6/60 (10%), Positives = 12/60 (20%)
Query: 1 MESAMREIQYCQTFLKKRLMFKNELQATVLEVKAIPGLGTTIDTILVNGTLYEGDTVVLA 60
+ L + V + + +GT D V+
Sbjct: 72 ERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAG 131
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 24.0 bits (51), Expect = 8.5
Identities = 5/20 (25%), Positives = 12/20 (60%)
Query: 119 AKDQDEIDDLCDEVARELKS 138
AK +++ +AR++K+
Sbjct: 150 AKANINVENAFFTLARDIKA 169
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 23.7 bits (50), Expect = 9.2
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 119 AKDQDEIDDLCDEVARELK 137
AK +D +A+ELK
Sbjct: 151 AKTGLNVDLAFTAIAKELK 169
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.134 0.362
Gapped
Lambda K H
0.267 0.0468 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 498,273
Number of extensions: 21813
Number of successful extensions: 133
Number of sequences better than 10.0: 1
Number of HSP's gapped: 132
Number of HSP's successfully gapped: 23
Length of query: 145
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 68
Effective length of database: 1,350,386
Effective search space: 91826248
Effective search space used: 91826248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.3 bits)