BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9898
(82 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6GPE5|FEM1B_XENLA Protein fem-1 homolog B OS=Xenopus laevis GN=fem1b PE=2 SV=1
Length = 629
Score = 63.9 bits (154), Expect = 3e-10, Method: Composition-based stats.
Identities = 31/58 (53%), Positives = 41/58 (70%)
Query: 3 AAERTQAEVVEFLVHKSGVTIEEKIDALELLGASFANDKENYCLTSAFKYLYKTMQLR 60
AAE +A+VVE L+ S + +I+ALELLGASFAND+ENY +T ++YLY M R
Sbjct: 228 AAESCKADVVELLLAHSDCDAKSRIEALELLGASFANDRENYNITKTYQYLYLAMLER 285
>sp|Q5ZM55|FEM1B_CHICK Protein fem-1 homolog B OS=Gallus gallus GN=FEM1B PE=2 SV=1
Length = 627
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 50/89 (56%), Gaps = 11/89 (12%)
Query: 3 AAERTQAEVVEFLVHKSGVTIEEKIDALELLGASFANDKENYCLTSAFKYLYKTMQLR-- 60
AAE +A+VVE L+ +G +I+ALELLGASFAND+ENY + + YLY M R
Sbjct: 226 AAESCKADVVELLLAHAGCNRRSRIEALELLGASFANDRENYDIMKTYHYLYLAMLERYR 285
Query: 61 -----IGRIIMTPIYT----TACVILQKL 80
I + ++ PI T C Q+L
Sbjct: 286 DSENIIEKEVLPPIEAYGNRTECRTPQEL 314
>sp|Q9Z2G0|FEM1B_MOUSE Protein fem-1 homolog B OS=Mus musculus GN=Fem1b PE=1 SV=1
Length = 627
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 50/89 (56%), Gaps = 11/89 (12%)
Query: 3 AAERTQAEVVEFLVHKSGVTIEEKIDALELLGASFANDKENYCLTSAFKYLYKTMQLR-- 60
AAE +A+VVE L+ + +I+ALELLGASFAND+ENY + + YLY M R
Sbjct: 226 AAESCKADVVELLLSHADCDRRSRIEALELLGASFANDRENYDIMKTYHYLYLAMLERFQ 285
Query: 61 -----IGRIIMTPIYT----TACVILQKL 80
+ + ++ PI+ T C Q+L
Sbjct: 286 DGDNILEKEVLPPIHAYGNRTECRNPQEL 314
>sp|P0C6P7|FEM1B_RAT Protein fem-1 homolog B OS=Rattus norvegicus GN=Fem1b PE=1 SV=1
Length = 627
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 50/89 (56%), Gaps = 11/89 (12%)
Query: 3 AAERTQAEVVEFLVHKSGVTIEEKIDALELLGASFANDKENYCLTSAFKYLYKTMQLR-- 60
AAE +A+VVE L+ + +I+ALELLGASFAND+ENY + + YLY M R
Sbjct: 226 AAESCKADVVELLLSHADCDRRSRIEALELLGASFANDRENYDIMKTYHYLYLAMLERFQ 285
Query: 61 -----IGRIIMTPIYT----TACVILQKL 80
+ + ++ PI+ T C Q+L
Sbjct: 286 DGDNILEKEVLPPIHAYGNRTECRNPQEL 314
>sp|Q9UK73|FEM1B_HUMAN Protein fem-1 homolog B OS=Homo sapiens GN=FEM1B PE=1 SV=1
Length = 627
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 50/89 (56%), Gaps = 11/89 (12%)
Query: 3 AAERTQAEVVEFLVHKSGVTIEEKIDALELLGASFANDKENYCLTSAFKYLYKTMQLR-- 60
AAE +A+VVE L+ + +I+ALELLGASFAND+ENY + + YLY M R
Sbjct: 226 AAESCKADVVELLLSHADCDRRSRIEALELLGASFANDRENYDIIKTYHYLYLAMLERFQ 285
Query: 61 -----IGRIIMTPIYT----TACVILQKL 80
+ + ++ PI+ T C Q+L
Sbjct: 286 DGDNILEKEVLPPIHAYGNRTECRNPQEL 314
>sp|A1ZBY1|FEM1B_DROME Protein fem-1 homolog B OS=Drosophila melanogaster GN=Fem-1 PE=2
SV=1
Length = 650
Score = 57.4 bits (137), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/61 (47%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Query: 1 MSAAERTQAEVVE-FLVHKSGVTIEEKIDALELLGASFANDKENYCLTSAFKYLYKTMQL 59
+ AAER +V+E F+ +++EE+I ALELLGA++ANDK Y + A+ YL + MQL
Sbjct: 227 LQAAERLHEDVLEAFIERPELMSLEEQITALELLGATYANDKIKYDVNKAYGYLLRAMQL 286
Query: 60 R 60
R
Sbjct: 287 R 287
>sp|Q96JP0|FEM1C_HUMAN Protein fem-1 homolog C OS=Homo sapiens GN=FEM1C PE=2 SV=1
Length = 617
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 1 MSAAERTQAEVVEFLVHKSGVTIEEKIDALELLGASFANDKENYCLTSAFKYLYKTMQLR 60
+SA+ +V+FL H + + E+I+ALELLGA+F + K + L A KY K M +R
Sbjct: 219 LSASVTGHTNIVDFLTHHAQTSKTERINALELLGATFVDKKRD--LLGALKYWKKAMNMR 276
Query: 61 IG---RIIMTPIYTT 72
II P+ T
Sbjct: 277 YSDRTNIISKPVPQT 291
>sp|Q8CEF1|FEM1C_MOUSE Protein fem-1 homolog C OS=Mus musculus GN=Fem1c PE=2 SV=1
Length = 617
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 1 MSAAERTQAEVVEFLVHKSGVTIEEKIDALELLGASFANDKENYCLTSAFKYLYKTMQLR 60
+SA+ +V+FL H + + E+I+ALELLGA+F + K + L A KY K M +R
Sbjct: 219 LSASVTGHTNIVDFLTHHAQTSKTERINALELLGATFVDKKRD--LLGALKYWKKAMNMR 276
Query: 61 IG---RIIMTPIYTT 72
II P+ T
Sbjct: 277 YSDRTNIISKPVPQT 291
>sp|A7MB89|FEM1C_BOVIN Protein fem-1 homolog C OS=Bos taurus GN=FEM1C PE=2 SV=1
Length = 617
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 1 MSAAERTQAEVVEFLVHKSGVTIEEKIDALELLGASFANDKENYCLTSAFKYLYKTMQLR 60
+SA+ +V+FL H + + E+I+ALELLGA+F + K + L A KY K M +R
Sbjct: 219 LSASVTGHTNIVDFLTHHAQTSKTERINALELLGATFVDKKRD--LLGALKYWKKAMNMR 276
Query: 61 IG---RIIMTPIYTT 72
II P+ T
Sbjct: 277 YSDRTNIISKPVPQT 291
>sp|Q6P9Z4|FEM1A_DANRE Protein fem-1 homolog A OS=Danio rerio GN=fem1a PE=2 SV=1
Length = 617
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 1 MSAAERTQAEVVEFLVHKSGVTIEEKIDALELLGASFANDKENYCLTSAFKYLYKTMQLR 60
++A+ +VEFLVH+ + E++I ALELLGA+F + K + L A +Y + M+LR
Sbjct: 219 LAASVTGHTNIVEFLVHQPRASREQRIHALELLGATFVDKKRD--LLGAMRYWRRAMELR 276
>sp|Q2T9K6|FEM1C_XENLA Protein fem-1 homolog C OS=Xenopus laevis GN=fem1c PE=2 SV=1
Length = 617
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 1 MSAAERTQAEVVEFLVHKSGVTIEEKIDALELLGASFANDKENYCLTSAFKYLYKTMQLR 60
+SA+ +V+FL + E+I+ALELLGA+F + K + L A KY + M +R
Sbjct: 219 LSASVTGHTNIVDFLTQNPQTSKNERINALELLGATFVDKKRD--LLGALKYWKRAMDMR 276
>sp|Q7T3P8|FEM1C_DANRE Protein fem-1 homolog C OS=Danio rerio GN=fem1c PE=2 SV=2
Length = 618
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 1 MSAAERTQAEVVEFLVHKSGVTIEEKIDALELLGASFANDKENYCLTSAFKYLYKTMQLR 60
+SA+ +V+FL + E+I ALELLGA+F + K + L A +Y + M+LR
Sbjct: 219 LSASVTGHTNIVDFLTAHPQTGLAERISALELLGATFVDKKRD--LLGALQYWKRAMELR 276
>sp|Q9BSK4|FEM1A_HUMAN Protein fem-1 homolog A OS=Homo sapiens GN=FEM1A PE=1 SV=1
Length = 669
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 24 EEKIDALELLGASFANDKENYCLTSAFKYLYKTMQLR 60
E ++ALELLGA++ + K + L A K+ + M+LR
Sbjct: 295 EAAVEALELLGATYVDKKRD--LLGALKHWRRAMELR 329
>sp|Q4V890|FEM1A_RAT Protein fem-1 homolog A OS=Rattus norvegicus GN=Fem1a PE=2 SV=1
Length = 654
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 24 EEKIDALELLGASFANDKENYCLTSAFKYLYKTMQLR 60
E ++ALELLGA++ + K + L A K+ + M+LR
Sbjct: 280 EAAVEALELLGATYVDKKRD--LLGALKHWRRAMELR 314
>sp|Q29RM5|FEM1A_BOVIN Protein fem-1 homolog A OS=Bos taurus GN=FEM1A PE=2 SV=1
Length = 653
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 24 EEKIDALELLGASFANDKENYCLTSAFKYLYKTMQLR 60
E ++ALELLGA++ + K + L A K+ + M+LR
Sbjct: 279 EAAVEALELLGATYVDKKRD--LLGALKHWRRAMELR 313
>sp|Q8C0T1|FM1AB_MOUSE Protein fem-1 homolog A-B OS=Mus musculus GN=Fem1ab PE=2 SV=1
Length = 654
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 24 EEKIDALELLGASFANDKENYCLTSAFKYLYKTMQLR 60
E ++ALELLGA++ + K + L A K+ + M+LR
Sbjct: 280 EAAVEALELLGATYVDKKRD--LLGALKHWRRAMELR 314
>sp|Q9Z2G1|FM1AA_MOUSE Protein fem-1 homolog A-A OS=Mus musculus GN=Fem1aa PE=2 SV=1
Length = 654
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 24 EEKIDALELLGASFANDKENYCLTSAFKYLYKTMQLR 60
E ++ALELLGA++ + K + L A K+ + M+LR
Sbjct: 280 EAAVEALELLGATYVDKKRD--LLGALKHWRRAMELR 314
>sp|Q9VFD5|FEM1A_DROME Protein fem-1 homolog CG6966 OS=Drosophila melanogaster GN=CG6966
PE=2 SV=2
Length = 664
Score = 30.0 bits (66), Expect = 4.0, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 26/43 (60%)
Query: 1 MSAAERTQAEVVEFLVHKSGVTIEEKIDALELLGASFANDKEN 43
++A+ +VE L+ V+ E +I ALELLGA++ + K +
Sbjct: 219 LAASVTGHMPIVEHLITLPCVSRESRIHALELLGATYVDRKRD 261
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.135 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,018,816
Number of Sequences: 539616
Number of extensions: 765124
Number of successful extensions: 1857
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1839
Number of HSP's gapped (non-prelim): 27
length of query: 82
length of database: 191,569,459
effective HSP length: 53
effective length of query: 29
effective length of database: 162,969,811
effective search space: 4726124519
effective search space used: 4726124519
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)