Query psy9898
Match_columns 82
No_of_seqs 98 out of 100
Neff 4.3
Searched_HMMs 46136
Date Fri Aug 16 22:25:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9898.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9898hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0508|consensus 99.8 1.7E-19 3.6E-24 148.1 5.9 70 1-73 220-291 (615)
2 PF13606 Ank_3: Ankyrin repeat 91.0 0.17 3.8E-06 26.4 1.7 18 2-19 8-25 (30)
3 PF13181 TPR_8: Tetratricopept 88.8 0.45 9.8E-06 23.9 2.2 30 28-60 2-31 (34)
4 PF00023 Ank: Ankyrin repeat H 88.3 0.38 8.2E-06 24.8 1.7 18 2-19 8-25 (33)
5 PF13374 TPR_10: Tetratricopep 87.9 0.66 1.4E-05 23.8 2.5 33 27-62 2-34 (42)
6 PF00515 TPR_1: Tetratricopept 86.1 0.9 2E-05 22.9 2.3 30 28-60 2-31 (34)
7 PF13176 TPR_7: Tetratricopept 84.8 0.97 2.1E-05 23.9 2.1 30 29-61 1-30 (36)
8 PF13424 TPR_12: Tetratricopep 83.2 3.3 7.2E-05 24.1 4.2 53 4-60 24-76 (78)
9 KOG0514|consensus 83.1 0.81 1.8E-05 37.9 1.9 21 1-21 378-398 (452)
10 PF07719 TPR_2: Tetratricopept 80.8 2 4.4E-05 21.2 2.3 29 28-59 2-30 (34)
11 PF08587 UBA_2: Ubiquitin asso 79.9 0.52 1.1E-05 28.0 -0.1 25 8-32 2-26 (46)
12 PF13414 TPR_11: TPR repeat; P 77.6 1.7 3.6E-05 24.7 1.6 30 27-59 3-32 (69)
13 PF13857 Ank_5: Ankyrin repeat 75.1 1.8 3.9E-05 24.7 1.2 17 2-18 22-38 (56)
14 smart00028 TPR Tetratricopepti 70.6 3.6 7.8E-05 18.0 1.5 29 28-59 2-30 (34)
15 smart00248 ANK ankyrin repeats 70.4 3.9 8.4E-05 17.6 1.6 18 2-19 8-25 (30)
16 PF13637 Ank_4: Ankyrin repeat 68.0 4.9 0.00011 22.3 1.9 17 2-18 7-23 (54)
17 PF13424 TPR_12: Tetratricopep 67.4 7.8 0.00017 22.5 2.8 33 24-59 2-34 (78)
18 PRK00188 trpD anthranilate pho 64.1 11 0.00024 29.3 3.8 71 5-75 117-191 (339)
19 cd00872 PI3Ka_I Phosphoinositi 61.9 9.6 0.00021 27.5 2.9 29 10-41 58-86 (171)
20 KOG4412|consensus 60.3 2.3 5E-05 32.5 -0.5 25 2-26 44-68 (226)
21 PF13432 TPR_16: Tetratricopep 60.1 21 0.00046 19.9 3.7 45 8-59 16-60 (65)
22 cd00870 PI3Ka_III Phosphoinosi 58.1 12 0.00025 26.7 2.8 40 10-55 65-104 (166)
23 PRK09071 hypothetical protein; 57.3 8.5 0.00019 30.1 2.2 68 7-74 123-194 (323)
24 PRK02603 photosystem I assembl 57.3 21 0.00046 24.0 3.9 36 22-60 30-65 (172)
25 cd00869 PI3Ka_II Phosphoinosit 53.1 16 0.00035 26.4 2.9 20 22-41 67-86 (169)
26 PF00486 Trans_reg_C: Transcri 51.4 46 0.001 19.2 4.8 48 8-59 10-59 (77)
27 PF12796 Ank_2: Ankyrin repeat 50.4 14 0.0003 21.8 1.9 17 2-18 32-48 (89)
28 smart00671 SEL1 Sel1-like repe 47.1 25 0.00054 17.3 2.3 30 29-58 3-33 (36)
29 PRK14607 bifunctional glutamin 46.1 28 0.00061 28.8 3.6 68 4-71 309-380 (534)
30 cd00871 PI4Ka Phosphoinositide 45.1 20 0.00044 26.1 2.4 28 25-54 69-96 (175)
31 PRK08136 glycosyl transferase 44.9 19 0.00041 28.2 2.3 64 5-68 123-190 (317)
32 KOG2227|consensus 44.7 43 0.00093 28.7 4.5 49 8-59 327-378 (529)
33 PLN02641 anthranilate phosphor 44.5 23 0.0005 28.0 2.8 68 5-72 117-188 (343)
34 KOG0508|consensus 44.0 26 0.00055 30.3 3.1 18 45-62 352-369 (615)
35 PF00591 Glycos_transf_3: Glyc 44.0 32 0.0007 25.2 3.3 58 5-62 45-102 (252)
36 PRK10370 formate-dependent nit 43.7 21 0.00046 25.3 2.3 31 27-60 144-174 (198)
37 PF05952 ComX: Bacillus compet 43.4 23 0.00049 21.8 2.1 12 9-20 3-14 (57)
38 KOG0658|consensus 38.5 16 0.00034 29.8 1.0 34 9-42 280-313 (364)
39 cd00383 trans_reg_C Effector d 38.0 88 0.0019 18.6 5.4 47 8-58 28-76 (95)
40 KOG2003|consensus 37.8 35 0.00075 29.9 3.0 34 44-82 251-284 (840)
41 TIGR01245 trpD anthranilate ph 36.2 45 0.00097 25.9 3.2 66 5-70 113-182 (330)
42 TIGR02741 TraQ type-F conjugat 35.6 35 0.00075 22.4 2.1 25 5-32 52-76 (80)
43 smart00862 Trans_reg_C Transcr 35.1 90 0.0019 17.8 5.9 47 8-58 10-59 (78)
44 PF13412 HTH_24: Winged helix- 34.6 56 0.0012 17.7 2.6 24 8-31 5-28 (48)
45 PHA02537 M terminase endonucle 34.3 1.2E+02 0.0026 22.9 5.2 51 9-59 151-207 (230)
46 PRK09522 bifunctional glutamin 34.2 38 0.00083 28.2 2.7 69 5-73 315-387 (531)
47 PRK13916 plasmid segregation p 34.0 56 0.0012 22.1 2.9 26 6-31 15-41 (97)
48 PF14938 SNAP: Soluble NSF att 33.6 1.6E+02 0.0034 21.7 5.6 52 4-59 93-144 (282)
49 KOG0511|consensus 32.9 17 0.00037 30.6 0.4 19 2-20 75-93 (516)
50 COG3286 Uncharacterized protei 32.1 39 0.00085 25.6 2.2 20 17-36 85-104 (204)
51 cd04439 DEP_1_P-Rex DEP (Dishe 32.0 60 0.0013 20.6 2.8 14 9-22 32-45 (81)
52 PF09679 TraQ: Type-F conjugat 30.9 51 0.0011 22.2 2.4 25 5-32 52-76 (93)
53 PF04703 FaeA: FaeA-like prote 30.8 27 0.00058 21.4 0.9 23 9-31 3-26 (62)
54 PF08238 Sel1: Sel1 repeat; I 30.7 44 0.00096 16.7 1.7 15 44-58 22-36 (39)
55 PHA02876 ankyrin repeat protei 30.6 31 0.00068 28.4 1.6 17 2-18 47-63 (682)
56 PRK11788 tetratricopeptide rep 30.2 1.4E+02 0.0031 21.8 4.9 46 10-58 90-135 (389)
57 PRK07394 hypothetical protein; 29.9 49 0.0011 26.0 2.5 64 5-68 126-196 (342)
58 PF12246 MKT1_C: Temperature d 29.7 76 0.0016 23.6 3.4 16 44-59 199-214 (243)
59 PRK12370 invasion protein regu 29.5 1.5E+02 0.0032 24.1 5.2 46 8-58 40-87 (553)
60 KOG0261|consensus 29.2 48 0.001 31.1 2.6 14 21-34 509-522 (1386)
61 PRK09836 DNA-binding transcrip 28.5 1.8E+02 0.004 19.3 5.1 47 8-58 155-203 (227)
62 TIGR00264 alpha-NAC-related pr 28.3 58 0.0013 22.6 2.4 35 10-53 80-114 (116)
63 PRK06369 nac nascent polypepti 27.8 61 0.0013 22.4 2.4 37 9-54 77-113 (115)
64 CHL00033 ycf3 photosystem I as 26.7 1E+02 0.0022 20.5 3.3 36 21-59 29-64 (168)
65 TIGR01127 ilvA_1Cterm threonin 26.5 1.1E+02 0.0024 23.6 3.9 38 19-58 79-116 (380)
66 PHA02946 ankyin-like protein; 26.4 42 0.00092 26.7 1.6 18 2-19 303-320 (446)
67 cd04448 DEP_PIKfyve DEP (Dishe 26.1 67 0.0015 20.2 2.2 12 9-20 32-43 (81)
68 PRK00102 rnc ribonuclease III; 25.8 1.4E+02 0.0029 21.2 4.0 30 24-57 114-144 (229)
69 PF12055 DUF3536: Domain of un 25.7 1.9E+02 0.0042 22.7 5.1 52 9-60 52-117 (285)
70 PF12512 DUF3717: Protein of u 25.5 50 0.0011 21.1 1.5 11 45-55 8-18 (71)
71 KOG1481|consensus 25.1 42 0.00091 27.5 1.4 20 18-37 130-149 (391)
72 PF12125 Beta-TrCP_D: D domain 25.0 78 0.0017 18.3 2.1 26 5-30 9-34 (40)
73 COG3710 CadC DNA-binding winge 24.8 2.3E+02 0.0049 19.7 4.9 46 8-58 36-83 (148)
74 cd00027 BRCT Breast Cancer Sup 24.5 86 0.0019 16.5 2.2 23 20-42 12-34 (72)
75 PF10265 DUF2217: Uncharacteri 24.3 87 0.0019 26.7 3.1 18 45-62 142-159 (514)
76 PHA02736 Viral ankyrin protein 23.7 71 0.0015 20.8 2.1 17 2-18 98-114 (154)
77 smart00145 PI3Ka Phosphoinosit 23.3 94 0.002 22.4 2.8 20 22-41 72-91 (184)
78 TIGR02552 LcrH_SycD type III s 23.1 1.3E+02 0.0029 18.5 3.2 26 28-56 18-43 (135)
79 PF13174 TPR_6: Tetratricopept 22.9 74 0.0016 15.0 1.6 27 29-58 2-28 (33)
80 PF09976 TPR_21: Tetratricopep 22.6 70 0.0015 20.9 1.9 30 25-57 116-145 (145)
81 PHA02791 ankyrin-like protein; 22.6 48 0.001 25.1 1.2 17 2-18 166-182 (284)
82 PHA02874 ankyrin repeat protei 22.6 56 0.0012 25.2 1.6 17 2-18 41-57 (434)
83 PF10978 DUF2785: Protein of u 22.3 1.3E+02 0.0028 21.3 3.3 34 4-37 70-103 (175)
84 cd04442 DEP_1_DEP6 DEP (Dishev 21.7 89 0.0019 20.0 2.2 12 9-20 32-43 (82)
85 PRK09468 ompR osmolarity respo 21.3 2.7E+02 0.0058 18.7 5.6 48 7-58 165-214 (239)
86 PF00610 DEP: Domain found in 21.2 97 0.0021 18.1 2.2 10 9-18 21-30 (74)
87 PF09895 DUF2122: RecB-family 21.0 82 0.0018 21.4 2.0 35 2-36 2-38 (106)
88 cd04371 DEP DEP domain, named 20.9 1E+02 0.0022 18.1 2.2 12 9-20 32-43 (81)
89 cd00204 ANK ankyrin repeats; 20.9 77 0.0017 18.3 1.7 18 2-19 13-30 (126)
90 COG1474 CDC6 Cdc6-related prot 20.7 1.8E+02 0.004 23.0 4.2 51 7-59 191-244 (366)
91 COG4132 ABC-type uncharacteriz 20.7 1.1E+02 0.0024 24.2 2.8 22 23-56 174-195 (282)
92 COG1308 EGD2 Transcription fac 20.5 97 0.0021 21.7 2.3 25 10-34 86-110 (122)
No 1
>KOG0508|consensus
Probab=99.78 E-value=1.7e-19 Score=148.12 Aligned_cols=70 Identities=31% Similarity=0.428 Sum_probs=65.0
Q ss_pred ChhhhhhHHHHHHHHhhccCCCHHHHHHHHHHhCcccccccccccHHHHHHHHHHHHHhHhC--CCCCCCcccch
Q psy9898 1 MSAAERTQAEVVEFLVHKSGVTIEEKIDALELLGASFANDKENYCLTSAFKYLYKTMQLRIG--RIIMTPIYTTA 73 (82)
Q Consensus 1 ~~Aa~~g~~~Ive~Li~~~~~s~~~rIdALELLGATf~dkk~~~D~~~A~~~Wr~AM~lR~~--~~i~K~~~~~~ 73 (82)
+.|+++||.+|||+|++ ..+|++.||+|||||||||+||| +|+.+|++||++||++|++ ++++++.+++|
T Consensus 220 ~~Aa~tG~~~iVe~L~~-~~~sr~~riealEllGat~~dkk--~D~~~al~~w~~aMe~r~~~~e~~~e~e~~~p 291 (615)
T KOG0508|consen 220 LLAAVTGHTDIVERLLQ-CETSRESRIEALELLGATYVDKK--RDLLGALKYWRRAMEERESDGESILEKEPLEP 291 (615)
T ss_pred HHHhhhcchHHHHHHhc-CCcchhhHHHHHHHhcccccchh--HHHHHHHHHHHHHHHhhhhccccccccCCCCc
Confidence 46999999999999998 45899999999999999999999 9999999999999999999 78888877765
No 2
>PF13606 Ank_3: Ankyrin repeat
Probab=91.04 E-value=0.17 Score=26.38 Aligned_cols=18 Identities=28% Similarity=0.475 Sum_probs=16.1
Q ss_pred hhhhhhHHHHHHHHhhcc
Q psy9898 2 SAAERTQAEVVEFLVHKS 19 (82)
Q Consensus 2 ~Aa~~g~~~Ive~Li~~~ 19 (82)
.||..|+.+||++|+++.
T Consensus 8 ~A~~~g~~e~v~~Ll~~g 25 (30)
T PF13606_consen 8 LAASNGNIEIVKYLLEHG 25 (30)
T ss_pred HHHHhCCHHHHHHHHHcC
Confidence 589999999999999873
No 3
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=88.82 E-value=0.45 Score=23.93 Aligned_cols=30 Identities=23% Similarity=0.342 Sum_probs=25.3
Q ss_pred HHHHHhCcccccccccccHHHHHHHHHHHHHhH
Q psy9898 28 DALELLGASFANDKENYCLTSAFKYLYKTMQLR 60 (82)
Q Consensus 28 dALELLGATf~dkk~~~D~~~A~~~Wr~AM~lR 60 (82)
+++-.+|-+|.... |...|+.+|++|+++.
T Consensus 2 ~~~~~lg~~y~~~~---~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLG---DYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTT---SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC---CHHHHHHHHHHHHhhC
Confidence 46778888888766 8999999999999875
No 4
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=88.34 E-value=0.38 Score=24.81 Aligned_cols=18 Identities=28% Similarity=0.547 Sum_probs=16.1
Q ss_pred hhhhhhHHHHHHHHhhcc
Q psy9898 2 SAAERTQAEVVEFLVHKS 19 (82)
Q Consensus 2 ~Aa~~g~~~Ive~Li~~~ 19 (82)
.||.+|+.+||++|+++-
T Consensus 8 ~A~~~~~~~~v~~Ll~~g 25 (33)
T PF00023_consen 8 YAAQRGHPDIVKLLLKHG 25 (33)
T ss_dssp HHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHCc
Confidence 589999999999999863
No 5
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=87.92 E-value=0.66 Score=23.75 Aligned_cols=33 Identities=18% Similarity=0.286 Sum_probs=25.8
Q ss_pred HHHHHHhCcccccccccccHHHHHHHHHHHHHhHhC
Q psy9898 27 IDALELLGASFANDKENYCLTSAFKYLYKTMQLRIG 62 (82)
Q Consensus 27 IdALELLGATf~dkk~~~D~~~A~~~Wr~AM~lR~~ 62 (82)
+.++.-||..|.+-. +...|..++++|+.++-.
T Consensus 2 a~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~ 34 (42)
T PF13374_consen 2 ASALNNLANAYRAQG---RYEEALELLEEALEIRER 34 (42)
T ss_dssp HHHHHHHHHHHHHCT----HHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhhh---hcchhhHHHHHHHHHHHH
Confidence 467788888887776 889999999999999763
No 6
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=86.05 E-value=0.9 Score=22.92 Aligned_cols=30 Identities=20% Similarity=0.327 Sum_probs=22.9
Q ss_pred HHHHHhCcccccccccccHHHHHHHHHHHHHhH
Q psy9898 28 DALELLGASFANDKENYCLTSAFKYLYKTMQLR 60 (82)
Q Consensus 28 dALELLGATf~dkk~~~D~~~A~~~Wr~AM~lR 60 (82)
+++=.+|-.|...+ +...|+.+|++|+++.
T Consensus 2 ~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLG---DYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT----HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhC---CchHHHHHHHHHHHHC
Confidence 45556777777666 8899999999999874
No 7
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=84.78 E-value=0.97 Score=23.86 Aligned_cols=30 Identities=23% Similarity=0.331 Sum_probs=23.1
Q ss_pred HHHHhCcccccccccccHHHHHHHHHHHHHhHh
Q psy9898 29 ALELLGASFANDKENYCLTSAFKYLYKTMQLRI 61 (82)
Q Consensus 29 ALELLGATf~dkk~~~D~~~A~~~Wr~AM~lR~ 61 (82)
||-.||-.|.... |..+|+.|+++|+.++.
T Consensus 1 al~~Lg~~~~~~g---~~~~Ai~~y~~aL~l~~ 30 (36)
T PF13176_consen 1 ALNNLGRIYRQQG---DYEKAIEYYEQALALAR 30 (36)
T ss_dssp HHHHHHHHHHHCT----HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcC---CHHHHHHHHHHHHHhcc
Confidence 4566777776655 88999999999998875
No 8
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=83.23 E-value=3.3 Score=24.09 Aligned_cols=53 Identities=15% Similarity=0.207 Sum_probs=38.3
Q ss_pred hhhhHHHHHHHHhhccCCCHHHHHHHHHHhCcccccccccccHHHHHHHHHHHHHhH
Q psy9898 4 AERTQAEVVEFLVHKSGVTIEEKIDALELLGASFANDKENYCLTSAFKYLYKTMQLR 60 (82)
Q Consensus 4 a~~g~~~Ive~Li~~~~~s~~~rIdALELLGATf~dkk~~~D~~~A~~~Wr~AM~lR 60 (82)
|+.-....++. .+..+-+..+.+.++-.||-.|.... |...|++|..+|+.++
T Consensus 24 A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g---~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 24 ALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLG---DYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhh
Confidence 34444555555 33333345567899999999987776 8899999999999986
No 9
>KOG0514|consensus
Probab=83.11 E-value=0.81 Score=37.89 Aligned_cols=21 Identities=33% Similarity=0.485 Sum_probs=20.1
Q ss_pred ChhhhhhHHHHHHHHhhccCC
Q psy9898 1 MSAAERTQAEVVEFLVHKSGV 21 (82)
Q Consensus 1 ~~Aa~~g~~~Ive~Li~~~~~ 21 (82)
||||+-||.+||..|.++|.|
T Consensus 378 MCA~EHGhkEivklLLA~p~c 398 (452)
T KOG0514|consen 378 MCAAEHGHKEIVKLLLAVPSC 398 (452)
T ss_pred hhhhhhChHHHHHHHhccCcc
Confidence 799999999999999999987
No 10
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=80.76 E-value=2 Score=21.18 Aligned_cols=29 Identities=24% Similarity=0.392 Sum_probs=22.4
Q ss_pred HHHHHhCcccccccccccHHHHHHHHHHHHHh
Q psy9898 28 DALELLGASFANDKENYCLTSAFKYLYKTMQL 59 (82)
Q Consensus 28 dALELLGATf~dkk~~~D~~~A~~~Wr~AM~l 59 (82)
+++-.+|-.|...+ +...|+++|++|+.+
T Consensus 2 ~~~~~lg~~~~~~~---~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLG---NYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC---CHHHHHHHHHHHHHH
Confidence 45666777777666 889999999999875
No 11
>PF08587 UBA_2: Ubiquitin associated domain (UBA) ; InterPro: IPR013896 This is a UBA (ubiquitin associated) protein []. Ubiquitin is involved in intracellular proteolysis. ; GO: 0004674 protein serine/threonine kinase activity; PDB: 3H4J_B.
Probab=79.86 E-value=0.52 Score=28.03 Aligned_cols=25 Identities=32% Similarity=0.363 Sum_probs=19.0
Q ss_pred HHHHHHHHhhccCCCHHHHHHHHHH
Q psy9898 8 QAEVVEFLVHKSGVTIEEKIDALEL 32 (82)
Q Consensus 8 ~~~Ive~Li~~~~~s~~~rIdALEL 32 (82)
|.+||.-|....+|++++..+||+-
T Consensus 2 de~vv~~Ls~tMGY~kdeI~eaL~~ 26 (46)
T PF08587_consen 2 DEDVVSKLSKTMGYDKDEIYEALES 26 (46)
T ss_dssp -HCCHHHHHCTT---HHHHHHHCCS
T ss_pred cHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 5678999999999999999999875
No 12
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=77.59 E-value=1.7 Score=24.73 Aligned_cols=30 Identities=23% Similarity=0.339 Sum_probs=23.7
Q ss_pred HHHHHHhCcccccccccccHHHHHHHHHHHHHh
Q psy9898 27 IDALELLGASFANDKENYCLTSAFKYLYKTMQL 59 (82)
Q Consensus 27 IdALELLGATf~dkk~~~D~~~A~~~Wr~AM~l 59 (82)
.+++..+|-.+.+.+ |...|+.++.+|+.+
T Consensus 3 a~~~~~~g~~~~~~~---~~~~A~~~~~~ai~~ 32 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQG---DYEEAIEYFEKAIEL 32 (69)
T ss_dssp HHHHHHHHHHHHHTT---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHc
Confidence 567777888887766 788888888888875
No 13
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=75.14 E-value=1.8 Score=24.75 Aligned_cols=17 Identities=35% Similarity=0.430 Sum_probs=14.0
Q ss_pred hhhhhhHHHHHHHHhhc
Q psy9898 2 SAAERTQAEVVEFLVHK 18 (82)
Q Consensus 2 ~Aa~~g~~~Ive~Li~~ 18 (82)
.||..|+.++|++|++.
T Consensus 22 ~A~~~g~~~~v~~Ll~~ 38 (56)
T PF13857_consen 22 WAARYGHSEVVRLLLQN 38 (56)
T ss_dssp HHHHHT-HHHHHHHHHC
T ss_pred HHHHcCcHHHHHHHHHC
Confidence 58999999999999943
No 14
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=70.61 E-value=3.6 Score=18.00 Aligned_cols=29 Identities=28% Similarity=0.397 Sum_probs=21.3
Q ss_pred HHHHHhCcccccccccccHHHHHHHHHHHHHh
Q psy9898 28 DALELLGASFANDKENYCLTSAFKYLYKTMQL 59 (82)
Q Consensus 28 dALELLGATf~dkk~~~D~~~A~~~Wr~AM~l 59 (82)
+++..+|.++.... +...|..++++++.+
T Consensus 2 ~~~~~~a~~~~~~~---~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLG---DYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHh---hHHHHHHHHHHHHcc
Confidence 35566777776655 678899999988864
No 15
>smart00248 ANK ankyrin repeats. Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.
Probab=70.37 E-value=3.9 Score=17.58 Aligned_cols=18 Identities=44% Similarity=0.527 Sum_probs=14.8
Q ss_pred hhhhhhHHHHHHHHhhcc
Q psy9898 2 SAAERTQAEVVEFLVHKS 19 (82)
Q Consensus 2 ~Aa~~g~~~Ive~Li~~~ 19 (82)
.|+..|+.+++++|++..
T Consensus 8 ~~~~~~~~~~~~~ll~~~ 25 (30)
T smart00248 8 LAAENGNLEVVKLLLDKG 25 (30)
T ss_pred HHHHcCCHHHHHHHHHcC
Confidence 467789999999998764
No 16
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=68.00 E-value=4.9 Score=22.35 Aligned_cols=17 Identities=29% Similarity=0.397 Sum_probs=14.5
Q ss_pred hhhhhhHHHHHHHHhhc
Q psy9898 2 SAAERTQAEVVEFLVHK 18 (82)
Q Consensus 2 ~Aa~~g~~~Ive~Li~~ 18 (82)
.||..|+.+++++|+++
T Consensus 7 ~A~~~g~~~~~~~Ll~~ 23 (54)
T PF13637_consen 7 WAARSGNLEIVKLLLEH 23 (54)
T ss_dssp HHHHTT-HHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHC
Confidence 58999999999999986
No 17
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=67.41 E-value=7.8 Score=22.48 Aligned_cols=33 Identities=15% Similarity=0.259 Sum_probs=27.2
Q ss_pred HHHHHHHHHhCcccccccccccHHHHHHHHHHHHHh
Q psy9898 24 EEKIDALELLGASFANDKENYCLTSAFKYLYKTMQL 59 (82)
Q Consensus 24 ~~rIdALELLGATf~dkk~~~D~~~A~~~Wr~AM~l 59 (82)
++...++..+|-.|..-. +...|+.++.+|+.+
T Consensus 2 ~~~a~~~~~la~~~~~~~---~~~~A~~~~~~al~~ 34 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELG---RYDEALDYYEKALDI 34 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHH
Confidence 356788889999988655 889999999999999
No 18
>PRK00188 trpD anthranilate phosphoribosyltransferase; Provisional
Probab=64.08 E-value=11 Score=29.26 Aligned_cols=71 Identities=17% Similarity=0.108 Sum_probs=50.9
Q ss_pred hhhHHHHHHHHhhccCCCHHHHHHHHHHhCcccccccccccHHHHHHHHHHHHHhHhC----CCCCCCcccchHH
Q psy9898 5 ERTQAEVVEFLVHKSGVTIEEKIDALELLGASFANDKENYCLTSAFKYLYKTMQLRIG----RIIMTPIYTTACV 75 (82)
Q Consensus 5 ~~g~~~Ive~Li~~~~~s~~~rIdALELLGATf~dkk~~~D~~~A~~~Wr~AM~lR~~----~~i~K~~~~~~~~ 75 (82)
..|..|++|.|=-....|.++-.+.|+-.|-+|++=...+-....+.-+|+-+-+|-. .|+-.|..++..+
T Consensus 117 ~~GsadvLe~lGi~~~~~~~~~~~~l~~~g~~fl~a~~~~P~l~~l~~lR~~Lg~Rt~fN~l~~L~NP~~~~~~v 191 (339)
T PRK00188 117 KSGSADVLEALGVNLDLSPEQVARCLEEVGIGFLFAPLYHPAMKHVAPVRKELGIRTIFNLLGPLTNPARPKRQL 191 (339)
T ss_pred CcCHHHHHHHcCCCCCCCHHHHHHHHHHcCcEEeeCcccCHHHHHHHHHHHHhCCCCHHHHHHHhcCCCCCCCEE
Confidence 3677899999976666789999999999999999976434455666667777777764 4555555444433
No 19
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=61.90 E-value=9.6 Score=27.46 Aligned_cols=29 Identities=24% Similarity=0.365 Sum_probs=19.7
Q ss_pred HHHHHHhhccCCCHHHHHHHHHHhCccccccc
Q psy9898 10 EVVEFLVHKSGVTIEEKIDALELLGASFANDK 41 (82)
Q Consensus 10 ~Ive~Li~~~~~s~~~rIdALELLGATf~dkk 41 (82)
++...|.+- ++.+-.||||||+..|.|..
T Consensus 58 e~~~lL~~W---~~i~~~~aLeLL~~~f~d~~ 86 (171)
T cd00872 58 QMYQLLKRW---PKLKPEQALELLDCNFPDEH 86 (171)
T ss_pred HHHHHHHCC---CCCCHHHHHHHCCCcCCCHH
Confidence 344444443 34455799999999999854
No 20
>KOG4412|consensus
Probab=60.32 E-value=2.3 Score=32.48 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=19.6
Q ss_pred hhhhhhHHHHHHHHhhccCCCHHHH
Q psy9898 2 SAAERTQAEVVEFLVHKSGVTIEEK 26 (82)
Q Consensus 2 ~Aa~~g~~~Ive~Li~~~~~s~~~r 26 (82)
.||--||.+||++|.+++.+...+|
T Consensus 44 wa~S~g~~eiv~fLlsq~nv~~ddk 68 (226)
T KOG4412|consen 44 WACSFGHVEIVYFLLSQPNVKPDDK 68 (226)
T ss_pred eeeecCchhHHHHHHhcCCCCCCCc
Confidence 3677899999999998876655554
No 21
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=60.13 E-value=21 Score=19.90 Aligned_cols=45 Identities=18% Similarity=0.275 Sum_probs=32.8
Q ss_pred HHHHHHHHhhccCCCHHHHHHHHHHhCcccccccccccHHHHHHHHHHHHHh
Q psy9898 8 QAEVVEFLVHKSGVTIEEKIDALELLGASFANDKENYCLTSAFKYLYKTMQL 59 (82)
Q Consensus 8 ~~~Ive~Li~~~~~s~~~rIdALELLGATf~dkk~~~D~~~A~~~Wr~AM~l 59 (82)
...+++-++... .+-.+++-++|-++...+ +...|..+++++..+
T Consensus 16 A~~~~~~~l~~~----P~~~~a~~~lg~~~~~~g---~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 16 AIAAFEQALKQD----PDNPEAWYLLGRILYQQG---RYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHHCCS----TTHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC----CCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHH
Confidence 344555555543 236799999999999766 888999999999864
No 22
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=58.08 E-value=12 Score=26.75 Aligned_cols=40 Identities=28% Similarity=0.220 Sum_probs=24.0
Q ss_pred HHHHHHhhccCCCHHHHHHHHHHhCcccccccccccHHHHHHHHHH
Q psy9898 10 EVVEFLVHKSGVTIEEKIDALELLGASFANDKENYCLTSAFKYLYK 55 (82)
Q Consensus 10 ~Ive~Li~~~~~s~~~rIdALELLGATf~dkk~~~D~~~A~~~Wr~ 55 (82)
++.++|..- ++.+-.|||||||..|.|... -.-|+++.+.
T Consensus 65 e~~~lL~~W---~~i~~~~aLeLL~~~f~~~~V---R~yAV~~L~~ 104 (166)
T cd00870 65 QALELMPKW---AKIDIEDALELLSPYFTNPVV---RKYAVSRLKL 104 (166)
T ss_pred HHHHHHhcC---CCCCHHHHHHHcCccCCCHHH---HHHHHHHHHh
Confidence 344444443 344567999999999987542 2345555554
No 23
>PRK09071 hypothetical protein; Validated
Probab=57.33 E-value=8.5 Score=30.09 Aligned_cols=68 Identities=18% Similarity=0.119 Sum_probs=50.9
Q ss_pred hHHHHHHHHhhccCCCHHHHHHHHHHhCcccccccccccHHHHHHHHHHHHHhHhC----CCCCCCcccchH
Q psy9898 7 TQAEVVEFLVHKSGVTIEEKIDALELLGASFANDKENYCLTSAFKYLYKTMQLRIG----RIIMTPIYTTAC 74 (82)
Q Consensus 7 g~~~Ive~Li~~~~~s~~~rIdALELLGATf~dkk~~~D~~~A~~~Wr~AM~lR~~----~~i~K~~~~~~~ 74 (82)
|..||+|.|=-....|+++-...||-.|-+|++=...+-..+.+.-+|+.+-+|-- .|+-.|..++.+
T Consensus 123 ~saDvLeaLGv~~~~~~~~~~~~l~~~g~~fl~ap~~hPa~~~~~~~R~~lg~RT~fN~lgpL~NPa~~~~~ 194 (323)
T PRK09071 123 YTEQLLEALGIPIARSWQEAEQALEEHNIAYLPLEDFAPQLQRMIDLRNTLGLRSPINTLARLLNPLNAKAS 194 (323)
T ss_pred cHHHHHHHCCCCCCCCHHHHHHHHHhcCeEEeehHHhChHHHHHHHHHHHhCCCCHHHHHHHHcCcCCCCce
Confidence 38999999966667899999999999999999876444566777777888877764 455555544433
No 24
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=57.29 E-value=21 Score=24.04 Aligned_cols=36 Identities=14% Similarity=0.049 Sum_probs=27.7
Q ss_pred CHHHHHHHHHHhCcccccccccccHHHHHHHHHHHHHhH
Q psy9898 22 TIEEKIDALELLGASFANDKENYCLTSAFKYLYKTMQLR 60 (82)
Q Consensus 22 s~~~rIdALELLGATf~dkk~~~D~~~A~~~Wr~AM~lR 60 (82)
++..++.++-.+|..+.... |...|+.++++|+.+.
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~ 65 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADG---EYAEALENYEEALKLE 65 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHh
Confidence 56677778888888886665 7788888888888764
No 25
>cd00869 PI3Ka_II Phosphoinositide 3-kinase (PI3K) class II, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, class II PI3-kinases phosphorylate phosphoinositol (PtdIns), PtdIns(4)-phosphate, but not PtdIns(4,5)-bisphosphate. They are larger, having a C2 domain at the C-terminus.
Probab=53.11 E-value=16 Score=26.42 Aligned_cols=20 Identities=30% Similarity=0.328 Sum_probs=16.2
Q ss_pred CHHHHHHHHHHhCccccccc
Q psy9898 22 TIEEKIDALELLGASFANDK 41 (82)
Q Consensus 22 s~~~rIdALELLGATf~dkk 41 (82)
++.+-+||||||+..|.|..
T Consensus 67 ~p~~p~~ALeLL~~~f~d~~ 86 (169)
T cd00869 67 APLRPLIALELLLPKFPDQE 86 (169)
T ss_pred CCCCHHHHHHHcCCcCCChH
Confidence 44556799999999999864
No 26
>PF00486 Trans_reg_C: Transcriptional regulatory protein, C terminal; InterPro: IPR001867 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain that is almost always found associated with the response regulator receiver domain (see IPR001789 from INTERPRO). It may play a role in DNA binding [].; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2K4J_A 2JPB_A 1ODD_A 1OPC_A 1KGS_A 2PMU_E 2JZY_A 1GXP_B 1QQI_A 2Z33_A ....
Probab=51.42 E-value=46 Score=19.16 Aligned_cols=48 Identities=27% Similarity=0.352 Sum_probs=34.6
Q ss_pred HHHHHHHHhhccC--CCHHHHHHHHHHhCcccccccccccHHHHHHHHHHHHHh
Q psy9898 8 QAEVVEFLVHKSG--VTIEEKIDALELLGASFANDKENYCLTSAFKYLYKTMQL 59 (82)
Q Consensus 8 ~~~Ive~Li~~~~--~s~~~rIdALELLGATf~dkk~~~D~~~A~~~Wr~AM~l 59 (82)
...++++|+.+++ +|+++.+++ +-|-...... +.+...+...|+.+.-
T Consensus 10 e~~lL~~L~~~~~~~vs~~~l~~~--~w~~~~~~~~--~~l~~~I~rLR~kL~~ 59 (77)
T PF00486_consen 10 EFRLLELLLRNPGRVVSREELIEA--LWGDEEDVSD--NSLDVHISRLRKKLED 59 (77)
T ss_dssp HHHHHHHHHHTTTSEEEHHHHHHH--HTSSSSTTCT--HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCCCCCCCHHHhCCh--hhhcccccch--hhHHHHHHHHHHHHhh
Confidence 3578999999976 588888773 4555552222 4788889988888763
No 27
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=50.41 E-value=14 Score=21.81 Aligned_cols=17 Identities=35% Similarity=0.501 Sum_probs=14.6
Q ss_pred hhhhhhHHHHHHHHhhc
Q psy9898 2 SAAERTQAEVVEFLVHK 18 (82)
Q Consensus 2 ~Aa~~g~~~Ive~Li~~ 18 (82)
.||..|+.+++++|+++
T Consensus 32 ~A~~~~~~~~~~~Ll~~ 48 (89)
T PF12796_consen 32 YAAENGNLEIVKLLLEN 48 (89)
T ss_dssp HHHHTTTHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHh
Confidence 58888999999999985
No 28
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=47.13 E-value=25 Score=17.31 Aligned_cols=30 Identities=23% Similarity=0.218 Sum_probs=19.0
Q ss_pred HHHHhCccccccc-ccccHHHHHHHHHHHHH
Q psy9898 29 ALELLGASFANDK-ENYCLTSAFKYLYKTMQ 58 (82)
Q Consensus 29 ALELLGATf~dkk-~~~D~~~A~~~Wr~AM~ 58 (82)
|.--||--|.+.. ...|...|+.+|++|-+
T Consensus 3 a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~ 33 (36)
T smart00671 3 AQYNLGQMYEYGLGVKKDLEKALEYYKKAAE 33 (36)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence 3334454444432 12589999999999865
No 29
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=46.14 E-value=28 Score=28.77 Aligned_cols=68 Identities=21% Similarity=0.109 Sum_probs=50.6
Q ss_pred hhhhHHHHHHHHhhccCCCHHHHHHHHHHhCcccccccccccHHHHHHHHHHHHHhHhC----CCCCCCccc
Q psy9898 4 AERTQAEVVEFLVHKSGVTIEEKIDALELLGASFANDKENYCLTSAFKYLYKTMQLRIG----RIIMTPIYT 71 (82)
Q Consensus 4 a~~g~~~Ive~Li~~~~~s~~~rIdALELLGATf~dkk~~~D~~~A~~~Wr~AM~lR~~----~~i~K~~~~ 71 (82)
+.+|..||+|.|=-....|.++-.+.++-.|-+|++=...+-..+-+.-.|+.|-+|-- .|+-.|..+
T Consensus 309 s~~Gsadvle~lGv~~~~~~~~~~~~l~~~g~~fl~ap~~~p~l~~~~~~R~~Lg~rTifN~lgpL~NP~~~ 380 (534)
T PRK14607 309 SKSGSADVLEALGVKLEMTPEEAASVLRETGFSFLFAPLFHPAMKHAAPARRELGIRTAFNLLGPLTNPARV 380 (534)
T ss_pred CCccHHHHHHHcCCCCCCCHHHHHHHHHHhCcEEeeccccCHHHHHHHHHHHHhCCCcHHHhHHhccCCCCC
Confidence 34688999999965666789999999999999999876444556666677888888743 455555543
No 30
>cd00871 PI4Ka Phosphoinositide 4-kinase(PI4K), accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. PI4K phosphorylates hydroxylgroup at position 4 on the inositol ring of phosphoinositide, the first commited step in the phosphatidylinositol cycle.
Probab=45.14 E-value=20 Score=26.07 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=18.4
Q ss_pred HHHHHHHHhCcccccccccccHHHHHHHHH
Q psy9898 25 EKIDALELLGASFANDKENYCLTSAFKYLY 54 (82)
Q Consensus 25 ~rIdALELLGATf~dkk~~~D~~~A~~~Wr 54 (82)
+-++|||||+..|-++. .=..-|++..+
T Consensus 69 ~p~~ALell~~~y~~~~--~Vr~yAvr~L~ 96 (175)
T cd00871 69 SPVQALSLFTPQYPGHP--LVLQYAVRVLE 96 (175)
T ss_pred CHHHHHHHhCcccCCCH--HHHHHHHHHHH
Confidence 44799999999999754 23344444443
No 31
>PRK08136 glycosyl transferase family protein; Provisional
Probab=44.87 E-value=19 Score=28.21 Aligned_cols=64 Identities=19% Similarity=0.059 Sum_probs=50.1
Q ss_pred hhhHHHHHHHHhhccCCCHHHHHHHHHHhCcccccccccccHHHHHHHHHHHHHhHhC----CCCCCC
Q psy9898 5 ERTQAEVVEFLVHKSGVTIEEKIDALELLGASFANDKENYCLTSAFKYLYKTMQLRIG----RIIMTP 68 (82)
Q Consensus 5 ~~g~~~Ive~Li~~~~~s~~~rIdALELLGATf~dkk~~~D~~~A~~~Wr~AM~lR~~----~~i~K~ 68 (82)
-.|..||+|.|=-....++++-.+.||-.|-+|++=...+-..+.+.-+|+.|-+|-- .|+-.|
T Consensus 123 k~gsadvleaLGi~~~~~~~~~~~~l~~~g~~fl~ap~~hPa~~~~~~vR~~LG~RT~fN~lgpL~NP 190 (317)
T PRK08136 123 RVTSAEIFEALGIPPTLHADQAQAKLAEGQPAFIPVGVLCPPLARLLALRWRMGVRNSAHTLAKLATP 190 (317)
T ss_pred cccHHHHHHHcCCCCCCCHHHHHHHHHhcCeEEEEhHHhCHHHHHHHHHHHHhCCCCHHHHHHHhcCc
Confidence 3688999999977777899999999999999999876434566777778888888764 455555
No 32
>KOG2227|consensus
Probab=44.69 E-value=43 Score=28.67 Aligned_cols=49 Identities=20% Similarity=0.263 Sum_probs=35.6
Q ss_pred HHHHHHHHhhccC---CCHHHHHHHHHHhCcccccccccccHHHHHHHHHHHHHh
Q psy9898 8 QAEVVEFLVHKSG---VTIEEKIDALELLGASFANDKENYCLTSAFKYLYKTMQL 59 (82)
Q Consensus 8 ~~~Ive~Li~~~~---~s~~~rIdALELLGATf~dkk~~~D~~~A~~~Wr~AM~l 59 (82)
..+|++.|.++.. .+.... .|+|+.-.-.+--. -|+.+|+.+.|+|+++
T Consensus 327 k~qI~~Il~~rl~~~~t~~~~~-~Aie~~ArKvaa~S--GDlRkaLdv~R~aiEI 378 (529)
T KOG2227|consen 327 KDQIVEILQQRLSEESTSIFLN-AAIELCARKVAAPS--GDLRKALDVCRRAIEI 378 (529)
T ss_pred HHHHHHHHHHHHhcccccccch-HHHHHHHHHhccCc--hhHHHHHHHHHHHHHH
Confidence 5689999988742 222222 58888766555555 5999999999999988
No 33
>PLN02641 anthranilate phosphoribosyltransferase
Probab=44.48 E-value=23 Score=27.96 Aligned_cols=68 Identities=15% Similarity=0.102 Sum_probs=50.5
Q ss_pred hhhHHHHHHHHhhccCCCHHHHHHHHHHhCcccccccccccHHHHHHHHHHHHHhHhC----CCCCCCcccc
Q psy9898 5 ERTQAEVVEFLVHKSGVTIEEKIDALELLGASFANDKENYCLTSAFKYLYKTMQLRIG----RIIMTPIYTT 72 (82)
Q Consensus 5 ~~g~~~Ive~Li~~~~~s~~~rIdALELLGATf~dkk~~~D~~~A~~~Wr~AM~lR~~----~~i~K~~~~~ 72 (82)
-+|..||+|.|=-....|+++-.+.||-.|-+|++=...+-..+-+.=+|+.+-+|-- .|+-+|..++
T Consensus 117 ~~GsaDvLeaLGi~~~~~~~~~~~~l~~~g~~fl~a~~~hPa~~~~~~~R~~LG~RT~fN~lgpL~NPa~~~ 188 (343)
T PLN02641 117 ACGSADVLEALGVAIDLGPEGVKRCVEEVGIGFMMAPKYHPAMKIVAPVRKKLKVKTVFNILGPMLNPARVP 188 (343)
T ss_pred ccCHHHHHHHcCCCCCCCHHHHHHHHHhcCcEEEechhhCHHHHHHHHHHHHhCCCcHHHHHHHhcCCCCCC
Confidence 4688999999966667899999999999999999865334555566666777777754 4666665443
No 34
>KOG0508|consensus
Probab=44.05 E-value=26 Score=30.30 Aligned_cols=18 Identities=0% Similarity=0.069 Sum_probs=16.8
Q ss_pred cHHHHHHHHHHHHHhHhC
Q psy9898 45 CLTSAFKYLYKTMQLRIG 62 (82)
Q Consensus 45 D~~~A~~~Wr~AM~lR~~ 62 (82)
.+.+.++.|+-|++|+.+
T Consensus 352 ~~~rCi~LWkyAL~mqQk 369 (615)
T KOG0508|consen 352 EFERCIRLWKYALDMQQK 369 (615)
T ss_pred cHHHHHHHHHHHHHHHHh
Confidence 789999999999999985
No 35
>PF00591 Glycos_transf_3: Glycosyl transferase family, a/b domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR000312 The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1V8G_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 3H5Q_A 1KHD_A 1KGZ_B 1AZY_A 1OTP_A ....
Probab=44.01 E-value=32 Score=25.20 Aligned_cols=58 Identities=19% Similarity=0.125 Sum_probs=43.0
Q ss_pred hhhHHHHHHHHhhccCCCHHHHHHHHHHhCcccccccccccHHHHHHHHHHHHHhHhC
Q psy9898 5 ERTQAEVVEFLVHKSGVTIEEKIDALELLGASFANDKENYCLTSAFKYLYKTMQLRIG 62 (82)
Q Consensus 5 ~~g~~~Ive~Li~~~~~s~~~rIdALELLGATf~dkk~~~D~~~A~~~Wr~AM~lR~~ 62 (82)
-.|..||+|.|=-....|.++-.+.||=.|..|++=...+-....+..+|+-|-+|-.
T Consensus 45 ~~Gs~dvLe~LGv~~~~~~~~~~~~l~~~g~~fl~~~~~~p~~~~l~~~R~~lg~rT~ 102 (252)
T PF00591_consen 45 KSGSADVLEALGVPIDLSPEEAQAQLEETGIAFLFAPNFHPALKRLAPVRRELGIRTV 102 (252)
T ss_dssp SSSHHHHHHHSTB-TT--HHHHHHHHHHHSEEEEEHHHHSGGHHHHHHHHHHHTS--S
T ss_pred cccHHHHHHhcCCCcCCCHHHHHHHhhccCeEEecchhcCcchHHHHHHHHHcCCCCH
Confidence 4688899999954556799999999999999999877433456778888999998853
No 36
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=43.69 E-value=21 Score=25.28 Aligned_cols=31 Identities=23% Similarity=0.241 Sum_probs=25.3
Q ss_pred HHHHHHhCcccccccccccHHHHHHHHHHHHHhH
Q psy9898 27 IDALELLGASFANDKENYCLTSAFKYLYKTMQLR 60 (82)
Q Consensus 27 IdALELLGATf~dkk~~~D~~~A~~~Wr~AM~lR 60 (82)
.+|+=+||..+.... |...|+.+|+++..+-
T Consensus 144 ~~al~~LA~~~~~~g---~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 144 VTALMLLASDAFMQA---DYAQAIELWQKVLDLN 174 (198)
T ss_pred hhHHHHHHHHHHHcC---CHHHHHHHHHHHHhhC
Confidence 478888888886544 8999999999998753
No 37
>PF05952 ComX: Bacillus competence pheromone ComX; InterPro: IPR009233 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. Natural genetic competence in Bacillus subtilis is controlled by quorum-sensing (QS). The ComP- ComA two-component system detects the signalling molecule ComX, and this signal is transduced by a conserved phosphotransfer mechanism. ComX is synthesised as an inactive precursor and is then cleaved and modified by ComQ before export to the extracellular environment [].
Probab=43.37 E-value=23 Score=21.76 Aligned_cols=12 Identities=33% Similarity=0.692 Sum_probs=9.9
Q ss_pred HHHHHHHhhccC
Q psy9898 9 AEVVEFLVHKSG 20 (82)
Q Consensus 9 ~~Ive~Li~~~~ 20 (82)
-+||+||+++|+
T Consensus 3 Q~iV~YLv~nPe 14 (57)
T PF05952_consen 3 QEIVNYLVQNPE 14 (57)
T ss_pred HHHHHHHHHChH
Confidence 379999999983
No 38
>KOG0658|consensus
Probab=38.49 E-value=16 Score=29.82 Aligned_cols=34 Identities=18% Similarity=0.335 Sum_probs=31.0
Q ss_pred HHHHHHHhhccCCCHHHHHHHHHHhCcccccccc
Q psy9898 9 AEVVEFLVHKSGVTIEEKIDALELLGASFANDKE 42 (82)
Q Consensus 9 ~~Ive~Li~~~~~s~~~rIdALELLGATf~dkk~ 42 (82)
.|.+++|.+.-.+++.+|+.|+|+|--.|.|..+
T Consensus 280 ~d~~dll~~~L~Y~P~~R~~~~~~l~h~fFdelr 313 (364)
T KOG0658|consen 280 PDALDLLSKLLQYSPSKRLSALEALAHPFFDELR 313 (364)
T ss_pred HHHHHHHHHHhccChhhcCCHHHHhcchhhHHhh
Confidence 5788899888889999999999999999999984
No 39
>cd00383 trans_reg_C Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and a response regulator. The former autophosphorylates in a histidine residue on detecting an external stimulus. The phosphate is then transferred to an invariant aspartate residue in a highly conserved receiver domain of the response regulator. Phosphorylation activates a variable effector domain of the response regulator, which triggers the cellular response. The C-terminal effector domain contains DNA and RNA polymerase binding sites. Several dimers or monomers bind head to tail to small tandem repeats upstream of the genes. The RNA polymerase binding sites interact with the alpha or sigma subunite of RNA polymerase.
Probab=38.05 E-value=88 Score=18.57 Aligned_cols=47 Identities=21% Similarity=0.397 Sum_probs=33.8
Q ss_pred HHHHHHHHhhccC--CCHHHHHHHHHHhCcccccccccccHHHHHHHHHHHHH
Q psy9898 8 QAEVVEFLVHKSG--VTIEEKIDALELLGASFANDKENYCLTSAFKYLYKTMQ 58 (82)
Q Consensus 8 ~~~Ive~Li~~~~--~s~~~rIdALELLGATf~dkk~~~D~~~A~~~Wr~AM~ 58 (82)
..+++.+|..+++ +|+++.++++- |-...... +.+...+...|+.+.
T Consensus 28 e~~lL~~L~~~~~~~vs~~~l~~~lw--~~~~~~~~--~~l~~~I~rLRkkl~ 76 (95)
T cd00383 28 EFELLELLARNPGRVLSREQLLEAVW--GDDYDVDD--RTVDVHISRLRKKLE 76 (95)
T ss_pred HHHHHHHHHhCCCCcCCHHHHHHHhc--CCCCCCCc--ccHHHHHHHHHHHhc
Confidence 3578999999986 68999988763 33331122 468888998888886
No 40
>KOG2003|consensus
Probab=37.80 E-value=35 Score=29.87 Aligned_cols=34 Identities=18% Similarity=0.224 Sum_probs=24.2
Q ss_pred ccHHHHHHHHHHHHHhHhCCCCCCCcccchHHHHhhhcC
Q psy9898 44 YCLTSAFKYLYKTMQLRIGRIIMTPIYTTACVILQKLGV 82 (82)
Q Consensus 44 ~D~~~A~~~Wr~AM~lR~~~~i~K~~~~~~~~~~~~~~~ 82 (82)
++..+|++|+|+|+. .+|.-.-.+---|||..||
T Consensus 251 r~fskaikfyrmald-----qvpsink~~rikil~nigv 284 (840)
T KOG2003|consen 251 REFSKAIKFYRMALD-----QVPSINKDMRIKILNNIGV 284 (840)
T ss_pred hhHHHHHHHHHHHHh-----hccccchhhHHHHHhhcCe
Confidence 488999999999986 3333333556677887776
No 41
>TIGR01245 trpD anthranilate phosphoribosyltransferase. In many widely different species, including E. coli, Thermotoga maritima, and Archaeoglobus fulgidus, this enzymatic domain (anthranilate phosphoribosyltransferase) is found C-terminal to glutamine amidotransferase; the fusion protein is designated anthranilate synthase component II (EC 4.1.3.27)
Probab=36.16 E-value=45 Score=25.86 Aligned_cols=66 Identities=17% Similarity=0.091 Sum_probs=46.6
Q ss_pred hhhHHHHHHHHhhccCCCHHHHHHHHHHhCcccccccccccHHHHHHHHHHHHHhHhC----CCCCCCcc
Q psy9898 5 ERTQAEVVEFLVHKSGVTIEEKIDALELLGASFANDKENYCLTSAFKYLYKTMQLRIG----RIIMTPIY 70 (82)
Q Consensus 5 ~~g~~~Ive~Li~~~~~s~~~rIdALELLGATf~dkk~~~D~~~A~~~Wr~AM~lR~~----~~i~K~~~ 70 (82)
-+|..|++|.|=-....|.++-.+.||-.|-+|++=...+-....+.-+|+-+-+|-. .|+-.|..
T Consensus 113 ~~Gs~d~le~LGi~~~~s~~~~~~~l~~~g~~f~~~~~~~P~~~~l~~lR~~lg~rT~~N~lgpL~NP~~ 182 (330)
T TIGR01245 113 KSGSADVLEALGVNLDLGPEKVARSLEETGIGFLFAPLYHPAMKHVAPVRRELGVRTVFNLLGPLTNPAR 182 (330)
T ss_pred CccHHHHHHHcCCCCCCCHHHHHHHHHHhCcEEeechhhCHHHHHHHHHHHHhCCCCHHHHHHHhcCCCC
Confidence 4678999999954556789999999999999999865333445556666766666653 34555543
No 42
>TIGR02741 TraQ type-F conjugative transfer system pilin chaperone TraQ. This protein makes a specific interaction with the pilin (TraA) protein to aid its transfer through the inner membrane during the process of F-type conjugative pilus assembly.
Probab=35.64 E-value=35 Score=22.39 Aligned_cols=25 Identities=32% Similarity=0.379 Sum_probs=19.2
Q ss_pred hhhHHHHHHHHhhccCCCHHHHHHHHHH
Q psy9898 5 ERTQAEVVEFLVHKSGVTIEEKIDALEL 32 (82)
Q Consensus 5 ~~g~~~Ive~Li~~~~~s~~~rIdALEL 32 (82)
+.|...|.+-.+.+ .++|+| ||+|.
T Consensus 52 l~G~YRiLdawiar--v~~eer-~~~~~ 76 (80)
T TIGR02741 52 LWGAYRVLDAWIAR--VSREER-DALEA 76 (80)
T ss_pred HhhHHHHHHHHHHH--HHHHHH-HHhhc
Confidence 56888899999987 467777 77763
No 43
>smart00862 Trans_reg_C Transcriptional regulatory protein, C terminal. This domain is almost always found associated with the response regulator receiver domain. It may play a role in DNA binding.
Probab=35.11 E-value=90 Score=17.81 Aligned_cols=47 Identities=26% Similarity=0.387 Sum_probs=33.6
Q ss_pred HHHHHHHHhhccC--CCHHHHHHHHHHhCccc-ccccccccHHHHHHHHHHHHH
Q psy9898 8 QAEVVEFLVHKSG--VTIEEKIDALELLGASF-ANDKENYCLTSAFKYLYKTMQ 58 (82)
Q Consensus 8 ~~~Ive~Li~~~~--~s~~~rIdALELLGATf-~dkk~~~D~~~A~~~Wr~AM~ 58 (82)
..+++.+|+.+++ +|+++.++++ -|-.. ...+ ..+...+...|+.+.
T Consensus 10 e~~lL~~L~~~~~~~vs~~~l~~~l--w~~~~~~~~~--~~l~~~i~~LR~~l~ 59 (78)
T smart00862 10 EFRLLELLLRNPGRVVSREELLEAV--WGDDDDDVDD--NTLDVHISRLRKKLE 59 (78)
T ss_pred HHHHHHHHHhCCCCccCHHHHHHHH--cCCCCCCCcc--chHHHHHHHHHHHHh
Confidence 4569999999976 6888887743 34333 1122 478899999999886
No 44
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=34.61 E-value=56 Score=17.70 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=18.6
Q ss_pred HHHHHHHHhhccCCCHHHHHHHHH
Q psy9898 8 QAEVVEFLVHKSGVTIEEKIDALE 31 (82)
Q Consensus 8 ~~~Ive~Li~~~~~s~~~rIdALE 31 (82)
...|+++|.++|.+|..+-.+.+.
T Consensus 5 ~~~Il~~l~~~~~~t~~ela~~~~ 28 (48)
T PF13412_consen 5 QRKILNYLRENPRITQKELAEKLG 28 (48)
T ss_dssp HHHHHHHHHHCTTS-HHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCHHHHHHHhC
Confidence 467999999999998888766553
No 45
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=34.28 E-value=1.2e+02 Score=22.95 Aligned_cols=51 Identities=18% Similarity=0.134 Sum_probs=38.6
Q ss_pred HHHHHHHhhccCCCHHHHHHHHHHhCcccccc------cccccHHHHHHHHHHHHHh
Q psy9898 9 AEVVEFLVHKSGVTIEEKIDALELLGASFAND------KENYCLTSAFKYLYKTMQL 59 (82)
Q Consensus 9 ~~Ive~Li~~~~~s~~~rIdALELLGATf~dk------k~~~D~~~A~~~Wr~AM~l 59 (82)
...|+.+...-+.+-+-+..=+..+|-.++.+ .+..++..|+.++++|+.+
T Consensus 151 ~~~~~~l~~~~dmpd~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l 207 (230)
T PHA02537 151 LRVFLDLTTEWDMPDEVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQL 207 (230)
T ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHh
Confidence 45667777666777777778899999988532 1225789999999999987
No 46
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=34.22 E-value=38 Score=28.22 Aligned_cols=69 Identities=10% Similarity=0.079 Sum_probs=48.3
Q ss_pred hhhHHHHHHHHhhccCCCHHHHHHHHHHhCcccccccccccHHHHHHHHHHHHHhHhC----CCCCCCcccch
Q psy9898 5 ERTQAEVVEFLVHKSGVTIEEKIDALELLGASFANDKENYCLTSAFKYLYKTMQLRIG----RIIMTPIYTTA 73 (82)
Q Consensus 5 ~~g~~~Ive~Li~~~~~s~~~rIdALELLGATf~dkk~~~D~~~A~~~Wr~AM~lR~~----~~i~K~~~~~~ 73 (82)
.+|-.||+|.|=-..+.|+++-...||-.|-+|+.=...+-..+-+.-.|+.+-+|-- .|+-.|..++.
T Consensus 315 ~~GsadvlealGi~~~~~~~~~~~~l~~~g~~fl~ap~~hpam~~~~~~R~~Lg~rT~fN~lgpL~NPa~~~~ 387 (531)
T PRK09522 315 KSGSSDLLAAFGINLDMNADKSRQALDELGVCFLFAPKYHTGFRHAMPVRQQLKTRTLFNVLGPLINPAHPPL 387 (531)
T ss_pred CccHHHHHHHcCCCCCCCHHHHHHHHHHhCcEEEEhhHhCHHHHHHHHHHHHhCCCcHHHHHHHhcCCCCCCc
Confidence 4688999999965667899999999999999998766333444444455666655543 46666655443
No 47
>PRK13916 plasmid segregation protein ParR; Provisional
Probab=34.02 E-value=56 Score=22.08 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=18.1
Q ss_pred hhHHHHHHHHhhccCCC-HHHHHHHHH
Q psy9898 6 RTQAEVVEFLVHKSGVT-IEEKIDALE 31 (82)
Q Consensus 6 ~g~~~Ive~Li~~~~~s-~~~rIdALE 31 (82)
.-|.+|||+|.+.|+-+ ..-..||||
T Consensus 15 ~~~~~iF~FL~~~P~GT~~~~iR~~L~ 41 (97)
T PRK13916 15 EDYPQIFDFLENVPRGTKTAHIREALR 41 (97)
T ss_pred cccHHHHHHHHHCCCCCccHHHHHHHH
Confidence 35789999999988643 334446765
No 48
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=33.64 E-value=1.6e+02 Score=21.69 Aligned_cols=52 Identities=15% Similarity=0.194 Sum_probs=36.3
Q ss_pred hhhhHHHHHHHHhhccCCCHHHHHHHHHHhCcccccccccccHHHHHHHHHHHHHh
Q psy9898 4 AERTQAEVVEFLVHKSGVTIEEKIDALELLGASFANDKENYCLTSAFKYLYKTMQL 59 (82)
Q Consensus 4 a~~g~~~Ive~Li~~~~~s~~~rIdALELLGATf~dkk~~~D~~~A~~~Wr~AM~l 59 (82)
|+....+-++.+...- ....-..++.-+|-.|-+.- .|...|++++.+|.++
T Consensus 93 Ai~~~~~A~~~y~~~G--~~~~aA~~~~~lA~~ye~~~--~d~e~Ai~~Y~~A~~~ 144 (282)
T PF14938_consen 93 AIECYEKAIEIYREAG--RFSQAAKCLKELAEIYEEQL--GDYEKAIEYYQKAAEL 144 (282)
T ss_dssp HHHHHHHHHHHHHHCT---HHHHHHHHHHHHHHHCCTT----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHH
Confidence 3445555666666543 34455788999999998873 3899999999999987
No 49
>KOG0511|consensus
Probab=32.92 E-value=17 Score=30.62 Aligned_cols=19 Identities=21% Similarity=0.302 Sum_probs=14.6
Q ss_pred hhhhhhHHHHHHHHhhccC
Q psy9898 2 SAAERTQAEVVEFLVHKSG 20 (82)
Q Consensus 2 ~Aa~~g~~~Ive~Li~~~~ 20 (82)
.||+.||++||.+|..+-.
T Consensus 75 lAsLcGHe~vvklLLenGA 93 (516)
T KOG0511|consen 75 LASLCGHEDVVKLLLENGA 93 (516)
T ss_pred HHHHcCcHHHHHHHHHcCC
Confidence 3788888888888887754
No 50
>COG3286 Uncharacterized protein conserved in archaea [Function unknown]
Probab=32.11 E-value=39 Score=25.62 Aligned_cols=20 Identities=40% Similarity=0.471 Sum_probs=16.9
Q ss_pred hccCCCHHHHHHHHHHhCcc
Q psy9898 17 HKSGVTIEEKIDALELLGAS 36 (82)
Q Consensus 17 ~~~~~s~~~rIdALELLGAT 36 (82)
..|.+|++=.||||++||--
T Consensus 85 a~p~Vp~~vl~daLk~~Gyr 104 (204)
T COG3286 85 ASPNVPPDVLIDALKLLGYR 104 (204)
T ss_pred hcCCCCHHHHHHHHHhCCce
Confidence 34678999999999999954
No 51
>cd04439 DEP_1_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 1 found in P-Rex-like proteins. The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and by the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.
Probab=31.97 E-value=60 Score=20.56 Aligned_cols=14 Identities=21% Similarity=0.451 Sum_probs=10.8
Q ss_pred HHHHHHHhhccCCC
Q psy9898 9 AEVVEFLVHKSGVT 22 (82)
Q Consensus 9 ~~Ive~Li~~~~~s 22 (82)
.++|++|+.+..++
T Consensus 32 selVdWL~~~~~~~ 45 (81)
T cd04439 32 NEFVSWLLEIGEIS 45 (81)
T ss_pred HHHHHHHHHcCCCC
Confidence 57899999887653
No 52
>PF09679 TraQ: Type-F conjugative transfer system pilin chaperone (TraQ); InterPro: IPR014112 This entry represents TraQ, a protein that makes a specific interaction with pilin (TraA) to aid its transfer through the inner membrane during the process of F-type conjugative pilus assembly [, ].
Probab=30.87 E-value=51 Score=22.18 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=19.1
Q ss_pred hhhHHHHHHHHhhccCCCHHHHHHHHHH
Q psy9898 5 ERTQAEVVEFLVHKSGVTIEEKIDALEL 32 (82)
Q Consensus 5 ~~g~~~Ive~Li~~~~~s~~~rIdALEL 32 (82)
+.|...|+|-+|.+ ++++|| .++|-
T Consensus 52 l~GgYrILda~iar--v~~eer-~~~ea 76 (93)
T PF09679_consen 52 LSGGYRILDAWIAR--VSREER-AALEA 76 (93)
T ss_pred hhhhHHHHHHHHHH--HhHHHH-HHHHH
Confidence 57889999999997 468877 55553
No 53
>PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A.
Probab=30.78 E-value=27 Score=21.40 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=17.6
Q ss_pred HHHHHHHhh-ccCCCHHHHHHHHH
Q psy9898 9 AEVVEFLVH-KSGVTIEEKIDALE 31 (82)
Q Consensus 9 ~~Ive~Li~-~~~~s~~~rIdALE 31 (82)
.+|.+||.. +.+++..|-+||+.
T Consensus 3 e~Il~~i~~~~~p~~T~eiA~~~g 26 (62)
T PF04703_consen 3 EKILEYIKEQNGPLKTREIADALG 26 (62)
T ss_dssp HCHHHHHHHHTS-EEHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCCHHHHHHHhC
Confidence 578999998 66688888888764
No 54
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=30.65 E-value=44 Score=16.70 Aligned_cols=15 Identities=27% Similarity=0.301 Sum_probs=12.8
Q ss_pred ccHHHHHHHHHHHHH
Q psy9898 44 YCLTSAFKYLYKTMQ 58 (82)
Q Consensus 44 ~D~~~A~~~Wr~AM~ 58 (82)
.|...|+++|++|-+
T Consensus 22 ~d~~~A~~~~~~Aa~ 36 (39)
T PF08238_consen 22 KDYEKAFKWYEKAAE 36 (39)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHH
Confidence 488999999999865
No 55
>PHA02876 ankyrin repeat protein; Provisional
Probab=30.61 E-value=31 Score=28.38 Aligned_cols=17 Identities=24% Similarity=0.395 Sum_probs=15.7
Q ss_pred hhhhhhHHHHHHHHhhc
Q psy9898 2 SAAERTQAEVVEFLVHK 18 (82)
Q Consensus 2 ~Aa~~g~~~Ive~Li~~ 18 (82)
.|+..||.+||++|+++
T Consensus 47 ~A~~~g~~e~V~~ll~~ 63 (682)
T PHA02876 47 QALQLRQIDIVEEIIQQ 63 (682)
T ss_pred HHHHHHhhhHHHHHHHh
Confidence 58999999999999986
No 56
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=30.22 E-value=1.4e+02 Score=21.84 Aligned_cols=46 Identities=20% Similarity=0.319 Sum_probs=25.7
Q ss_pred HHHHHHhhccCCCHHHHHHHHHHhCcccccccccccHHHHHHHHHHHHH
Q psy9898 10 EVVEFLVHKSGVTIEEKIDALELLGASFANDKENYCLTSAFKYLYKTMQ 58 (82)
Q Consensus 10 ~Ive~Li~~~~~s~~~rIdALELLGATf~dkk~~~D~~~A~~~Wr~AM~ 58 (82)
++++-++..+..+...+..++..||..|.... +...|+.++.++..
T Consensus 90 ~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g---~~~~A~~~~~~~l~ 135 (389)
T PRK11788 90 RIHQNLLSRPDLTREQRLLALQELGQDYLKAG---LLDRAEELFLQLVD 135 (389)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHc
Confidence 44444555554555555566666776665544 45556666555544
No 57
>PRK07394 hypothetical protein; Provisional
Probab=29.92 E-value=49 Score=25.98 Aligned_cols=64 Identities=17% Similarity=0.188 Sum_probs=48.6
Q ss_pred hhh--HHHHHHHHhhccCC-CHHHHHHHHHHhCcccccccccccHHHHHHHHHHHHHhHhC----CCCCCC
Q psy9898 5 ERT--QAEVVEFLVHKSGV-TIEEKIDALELLGASFANDKENYCLTSAFKYLYKTMQLRIG----RIIMTP 68 (82)
Q Consensus 5 ~~g--~~~Ive~Li~~~~~-s~~~rIdALELLGATf~dkk~~~D~~~A~~~Wr~AM~lR~~----~~i~K~ 68 (82)
.+| ..||+|.|=-.... ++++-...||-.|-+|++=...+-..+-+.-.|+.+-+|-- .|+-+|
T Consensus 126 k~GvtsaDvLe~LGv~~~~~~~~~~~~~l~~~g~~Fl~ap~~hP~m~~~~~vR~~Lg~RT~fN~lgpL~NP 196 (342)
T PRK07394 126 KYGVPLVELWQGLGVDLTGLSLEQVQEGFEQTGLAFIYQPDHFPLAESLIPYRDEIGKRPPLATLELIWTP 196 (342)
T ss_pred CCCchHHHHHHHCCCCCCCCCHHHHHHHHHHcCceeeechhhCHHHHHHHHHHHHhCCCCHHHHHHHhcCC
Confidence 357 88999999766666 89999999999999999977444556666677777777764 455555
No 58
>PF12246 MKT1_C: Temperature dependent protein affecting M2 dsRNA replication; InterPro: IPR022039 This domain family is found in eukaryotes, and is typically between 231 and 255 amino acids in length. There is a single completely conserved residue P that may be functionally important. MKT1 is required for maintenance of K2 toxin above 30 degrees C in strains with the L-A-HN variant of the L-A double-stranded RNA virus of Saccharomyces cerevisiae. MKT1 is a 93 kDa protein with serine-rich regions and the retroviral protease signature, DTG. This family is the C-terminal region of MKT1.
Probab=29.68 E-value=76 Score=23.57 Aligned_cols=16 Identities=19% Similarity=0.137 Sum_probs=14.2
Q ss_pred ccHHHHHHHHHHHHHh
Q psy9898 44 YCLTSAFKYLYKTMQL 59 (82)
Q Consensus 44 ~D~~~A~~~Wr~AM~l 59 (82)
.|+..|+++|...+..
T Consensus 199 ~dl~~a~~Fw~~~~~~ 214 (243)
T PF12246_consen 199 EDLERAFEFWDAVYKG 214 (243)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4999999999998875
No 59
>PRK12370 invasion protein regulator; Provisional
Probab=29.47 E-value=1.5e+02 Score=24.13 Aligned_cols=46 Identities=22% Similarity=0.331 Sum_probs=36.4
Q ss_pred HHHHHHHHhhccC--CCHHHHHHHHHHhCcccccccccccHHHHHHHHHHHHH
Q psy9898 8 QAEVVEFLVHKSG--VTIEEKIDALELLGASFANDKENYCLTSAFKYLYKTMQ 58 (82)
Q Consensus 8 ~~~Ive~Li~~~~--~s~~~rIdALELLGATf~dkk~~~D~~~A~~~Wr~AM~ 58 (82)
-.+|+++|+.+++ +|+++.++++ -|...+++ +.+...+...|+.+.
T Consensus 40 E~~lL~~L~~~~~~vvsr~~l~~~v--W~~~~~~~---~~l~~~I~~LRkkl~ 87 (553)
T PRK12370 40 EYAVLVILLEAAGEIVSKNTLLDQV--WGDAEVNE---ESLTRCIYALRRILS 87 (553)
T ss_pred HHHHHHHHHhCCCCcCcHHHHHHHh--cCCCCCCc---chHHHHHHHHHHhhc
Confidence 3578999999987 6999999977 46554443 478899999999995
No 60
>KOG0261|consensus
Probab=29.23 E-value=48 Score=31.05 Aligned_cols=14 Identities=43% Similarity=0.582 Sum_probs=12.8
Q ss_pred CCHHHHHHHHHHhC
Q psy9898 21 VTIEEKIDALELLG 34 (82)
Q Consensus 21 ~s~~~rIdALELLG 34 (82)
-+.|.|.+|++|||
T Consensus 509 QTEEAraEA~~LMg 522 (1386)
T KOG0261|consen 509 QTEEARAEALVLMG 522 (1386)
T ss_pred chHHHHHHHHHHhc
Confidence 57899999999999
No 61
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=28.52 E-value=1.8e+02 Score=19.34 Aligned_cols=47 Identities=17% Similarity=0.305 Sum_probs=34.2
Q ss_pred HHHHHHHHhhccC--CCHHHHHHHHHHhCcccccccccccHHHHHHHHHHHHH
Q psy9898 8 QAEVVEFLVHKSG--VTIEEKIDALELLGASFANDKENYCLTSAFKYLYKTMQ 58 (82)
Q Consensus 8 ~~~Ive~Li~~~~--~s~~~rIdALELLGATf~dkk~~~D~~~A~~~Wr~AM~ 58 (82)
..+|+++|..+++ +|+++.++++ -|-.+-... +.+..-+.-.|+-+.
T Consensus 155 E~~ll~~l~~~~g~~~sr~~l~~~~--w~~~~~~~~--~~v~~~i~~lR~Kl~ 203 (227)
T PRK09836 155 EFTLLEFFLRHQGEVLPRSLIASQV--WDMNFDSDT--NAIDVAVKRLRGKID 203 (227)
T ss_pred HHHHHHHHHhCCCeeEcHHHHHHHH--cCCCCCCCc--CCHHHHHHHHHHHhC
Confidence 3589999999998 7999998876 453332223 467788888888775
No 62
>TIGR00264 alpha-NAC-related protein. This hypothetical protein is found so far only in the Archaea. Its C-terminal domain of about 40 amino acids is homologous to the C-termini of the nascent polypeptide-associated complex alpha chain (alpha-NAC) and its yeast ortholog Egd2p and to the huntingtin-interacting protein HYPK. It shows weaker similarity, possibly through shared structural constraints rather than through homology, with the amino-terminal domain of elongation factor Ts. Alpha-NAC plays a role in preventing nascent polypeptides from binding inappropriately to membrane-targeting apparatus during translation, but is also active as a transcription regulator.
Probab=28.29 E-value=58 Score=22.60 Aligned_cols=35 Identities=29% Similarity=0.263 Sum_probs=27.3
Q ss_pred HHHHHHhhccCCCHHHHHHHHHHhCcccccccccccHHHHHHHH
Q psy9898 10 EVVEFLVHKSGVTIEEKIDALELLGASFANDKENYCLTSAFKYL 53 (82)
Q Consensus 10 ~Ive~Li~~~~~s~~~rIdALELLGATf~dkk~~~D~~~A~~~W 53 (82)
+=++.+.++.++|+++-++|||= .|.|+..|+-++
T Consensus 80 eDI~lV~eq~gvs~e~A~~AL~~---------~~gDl~~AI~~L 114 (116)
T TIGR00264 80 DDIELVMKQCNVSKEEARRALEE---------CGGDLAEAIMKL 114 (116)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHH---------cCCCHHHHHHHh
Confidence 44788899999999999999973 235888777654
No 63
>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed
Probab=27.81 E-value=61 Score=22.36 Aligned_cols=37 Identities=35% Similarity=0.346 Sum_probs=29.1
Q ss_pred HHHHHHHhhccCCCHHHHHHHHHHhCcccccccccccHHHHHHHHH
Q psy9898 9 AEVVEFLVHKSGVTIEEKIDALELLGASFANDKENYCLTSAFKYLY 54 (82)
Q Consensus 9 ~~Ive~Li~~~~~s~~~rIdALELLGATf~dkk~~~D~~~A~~~Wr 54 (82)
.+=|+.+.++.++|+++-++||+= .|.|+..|+-++.
T Consensus 77 ~edI~lv~~q~gvs~~~A~~AL~~---------~~gDl~~AI~~L~ 113 (115)
T PRK06369 77 EEDIELVAEQTGVSEEEARKALEE---------ANGDLAEAILKLS 113 (115)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHH---------cCCcHHHHHHHHh
Confidence 455788999999999999999972 2358888887654
No 64
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=26.74 E-value=1e+02 Score=20.49 Aligned_cols=36 Identities=19% Similarity=0.180 Sum_probs=23.2
Q ss_pred CCHHHHHHHHHHhCcccccccccccHHHHHHHHHHHHHh
Q psy9898 21 VTIEEKIDALELLGASFANDKENYCLTSAFKYLYKTMQL 59 (82)
Q Consensus 21 ~s~~~rIdALELLGATf~dkk~~~D~~~A~~~Wr~AM~l 59 (82)
.+...+++++-.+|..+.... +...|+.++++|+.+
T Consensus 29 ~~~~~~a~~~~~~g~~~~~~g---~~~~A~~~~~~al~l 64 (168)
T CHL00033 29 TSGEKEAFTYYRDGMSAQSEG---EYAEALQNYYEAMRL 64 (168)
T ss_pred CchhHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhc
Confidence 455666666666766665444 556777777777765
No 65
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=26.53 E-value=1.1e+02 Score=23.55 Aligned_cols=38 Identities=13% Similarity=0.100 Sum_probs=27.8
Q ss_pred cCCCHHHHHHHHHHhCcccccccccccHHHHHHHHHHHHH
Q psy9898 19 SGVTIEEKIDALELLGASFANDKENYCLTSAFKYLYKTMQ 58 (82)
Q Consensus 19 ~~~s~~~rIdALELLGATf~dkk~~~D~~~A~~~Wr~AM~ 58 (82)
|..++.+|+++++.+||..+--. .+...++++.++...
T Consensus 79 p~~~~~~k~~~~~~~GA~V~~~~--~~~~~a~~~a~~~~~ 116 (380)
T TIGR01127 79 PESAPPSKVKATKSYGAEVILHG--DDYDEAYAFATSLAE 116 (380)
T ss_pred cCCCcHHHHHHHHHCCCEEEEEC--CCHHHHHHHHHHHHH
Confidence 44567889999999999987554 456677777666544
No 66
>PHA02946 ankyin-like protein; Provisional
Probab=26.39 E-value=42 Score=26.72 Aligned_cols=18 Identities=22% Similarity=0.346 Sum_probs=15.7
Q ss_pred hhhhhhHHHHHHHHhhcc
Q psy9898 2 SAAERTQAEVVEFLVHKS 19 (82)
Q Consensus 2 ~Aa~~g~~~Ive~Li~~~ 19 (82)
.|+..|+.+||++|+++-
T Consensus 303 ~Aa~~g~~eivk~Ll~~~ 320 (446)
T PHA02946 303 MAVEVGSIRCVKYLLDND 320 (446)
T ss_pred HHHHcCCHHHHHHHHHCC
Confidence 588899999999999874
No 67
>cd04448 DEP_PIKfyve DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGEF (GDP/GTP exchange factor) PIKfyve-like proteins. PIKfyve contains N-terminal Fyve finger and DEP domains, a central chaperonin-like domain and a C-terminal PIPK (phosphatidylinositol phosphate kinase) domain. PIKfyve-like proteins are important phosphatidylinositol (3)-monophosphate (PtdIns(3)P)-5-kinases, producing PtdIns(3,5)P2, which plays a major role in multivesicular body (MVB) sorting and control of retrograde traffic from the vacuole back to the endosome and/or Golgi. PIKfyve itself has been shown to be play a role in regulating early-endosome-to-trans-Golgi network (TGN) retrograde trafficking.
Probab=26.13 E-value=67 Score=20.21 Aligned_cols=12 Identities=25% Similarity=0.595 Sum_probs=9.1
Q ss_pred HHHHHHHhhccC
Q psy9898 9 AEVVEFLVHKSG 20 (82)
Q Consensus 9 ~~Ive~Li~~~~ 20 (82)
.++|++|+.+..
T Consensus 32 selVdWL~~~~~ 43 (81)
T cd04448 32 KELVNWLIRQGK 43 (81)
T ss_pred HHHHHHHHHcCC
Confidence 578999998743
No 68
>PRK00102 rnc ribonuclease III; Reviewed
Probab=25.83 E-value=1.4e+02 Score=21.19 Aligned_cols=30 Identities=27% Similarity=0.462 Sum_probs=20.0
Q ss_pred HHHHHHHH-HhCcccccccccccHHHHHHHHHHHH
Q psy9898 24 EEKIDALE-LLGASFANDKENYCLTSAFKYLYKTM 57 (82)
Q Consensus 24 ~~rIdALE-LLGATf~dkk~~~D~~~A~~~Wr~AM 57 (82)
.-..|++| ++||.|+|.. . ..+.++..+-+
T Consensus 114 k~~ad~~EA~iGAiyld~g--~--~~~~~~i~~~~ 144 (229)
T PRK00102 114 SILADAFEALIGAIYLDQG--L--EAARKFILRLF 144 (229)
T ss_pred cHHHHHHHHHHHHHHHhCC--H--HHHHHHHHHHH
Confidence 34578899 8999999864 3 34555554444
No 69
>PF12055 DUF3536: Domain of unknown function (DUF3536); InterPro: IPR021923 This presumed domain is functionally uncharacterised. This domain is found in bacteria and archaea. This domain is typically between 274 to 285 amino acids in length. This domain is found associated with PF03065 from PFAM.
Probab=25.67 E-value=1.9e+02 Score=22.73 Aligned_cols=52 Identities=23% Similarity=0.433 Sum_probs=37.5
Q ss_pred HHHHHHHhhcc--CCCHHHHHHHHHHhCcc------------cccccccccHHHHHHHHHHHHHhH
Q psy9898 9 AEVVEFLVHKS--GVTIEEKIDALELLGAS------------FANDKENYCLTSAFKYLYKTMQLR 60 (82)
Q Consensus 9 ~~Ive~Li~~~--~~s~~~rIdALELLGAT------------f~dkk~~~D~~~A~~~Wr~AM~lR 60 (82)
.++-++|..+. +.+.+++++||.||=+- |.|+-.--+...+++|=.||+++-
T Consensus 52 ~~~~~Fl~~h~~~~l~~~e~~~al~LLEmQr~~l~mfTSCgWFFdeisgiE~vq~l~yA~RAieLa 117 (285)
T PF12055_consen 52 ENVEAFLARHAKRPLSPEERVEALKLLEMQRHALLMFTSCGWFFDEISGIETVQILRYAARAIELA 117 (285)
T ss_pred HHHHHHHHHhCcCCCCHHHHHHHHHHHHHHHHHHHHhhhHHHhhhcccchhHHHHHHHHHHHHHHH
Confidence 45556666553 36999999999999642 555542236788999999999873
No 70
>PF12512 DUF3717: Protein of unknown function (DUF3717) ; InterPro: IPR022191 This family of proteins is found in bacteria. Proteins in this family are typically between 75 and 117 amino acids in length. There is a conserved AIN sequence motif. There are two completely conserved residues (L and Y) that may be functionally important.
Probab=25.48 E-value=50 Score=21.09 Aligned_cols=11 Identities=18% Similarity=0.295 Sum_probs=10.0
Q ss_pred cHHHHHHHHHH
Q psy9898 45 CLTSAFKYLYK 55 (82)
Q Consensus 45 D~~~A~~~Wr~ 55 (82)
|+..|+.|||.
T Consensus 8 dIE~AIN~WR~ 18 (71)
T PF12512_consen 8 DIEAAINYWRA 18 (71)
T ss_pred HHHHHHHHHHh
Confidence 89999999994
No 71
>KOG1481|consensus
Probab=25.12 E-value=42 Score=27.46 Aligned_cols=20 Identities=40% Similarity=0.466 Sum_probs=16.1
Q ss_pred ccCCCHHHHHHHHHHhCccc
Q psy9898 18 KSGVTIEEKIDALELLGASF 37 (82)
Q Consensus 18 ~~~~s~~~rIdALELLGATf 37 (82)
-|+-...+|+|-||+|||+.
T Consensus 130 mPddqs~eK~~ile~LGA~V 149 (391)
T KOG1481|consen 130 MPDDQSQEKSDILEFLGAEV 149 (391)
T ss_pred CCChHHHHHHHHHHHhccee
Confidence 35556789999999999874
No 72
>PF12125 Beta-TrCP_D: D domain of beta-TrCP; InterPro: IPR021977 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found associated with PF00646 from PFAM, PF00400 from PFAM. The protein that contains this domain functions as a ubiquitin ligase. Ubiquitination is required to direct proteins towards the proteasome for degradation. This protein is part of the WD40 class of F box proteins. The D domain of these F box proteins is involved in mediating the dimerisation of the protein. Dimerisation is necessary to polyubiquitinate substrates so this D domain is vital in directing substrates towards the proteasome for degradation. ; PDB: 2P64_A 1P22_A.
Probab=25.00 E-value=78 Score=18.31 Aligned_cols=26 Identities=27% Similarity=0.311 Sum_probs=19.5
Q ss_pred hhhHHHHHHHHhhccCCCHHHHHHHH
Q psy9898 5 ERTQAEVVEFLVHKSGVTIEEKIDAL 30 (82)
Q Consensus 5 ~~g~~~Ive~Li~~~~~s~~~rIdAL 30 (82)
++...|.||.|+++..--...+|||.
T Consensus 9 e~eQvdFVe~Ll~rM~H~Qhg~In~f 34 (40)
T PF12125_consen 9 ESEQVDFVEQLLSRMCHYQHGQINAF 34 (40)
T ss_dssp HHHHHHHHHHHHHTS-HHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHhHHHH
Confidence 45678899999999865677788874
No 73
>COG3710 CadC DNA-binding winged-HTH domains [Transcription]
Probab=24.75 E-value=2.3e+02 Score=19.66 Aligned_cols=46 Identities=22% Similarity=0.419 Sum_probs=38.3
Q ss_pred HHHHHHHHhhccC--CCHHHHHHHHHHhCcccccccccccHHHHHHHHHHHHH
Q psy9898 8 QAEVVEFLVHKSG--VTIEEKIDALELLGASFANDKENYCLTSAFKYLYKTMQ 58 (82)
Q Consensus 8 ~~~Ive~Li~~~~--~s~~~rIdALELLGATf~dkk~~~D~~~A~~~Wr~AM~ 58 (82)
..++.++|..+++ +|+++.+++ .-|-+++.+. ++..++.-.|++..
T Consensus 36 ~~~lL~~L~e~~geVvsk~eL~~~--VW~~~~v~~~---~Ltq~I~~LRr~L~ 83 (148)
T COG3710 36 ELKLLSLLLERAGEVVSKDELLDA--VWPGRIVTVN---TLTQAISALRRALR 83 (148)
T ss_pred HHHHHHHHHhccCceecHHHHHHH--hCCCceEccC---hHHHHHHHHHHHHh
Confidence 3578899999876 699999886 4788888887 69999999999985
No 74
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=24.52 E-value=86 Score=16.51 Aligned_cols=23 Identities=17% Similarity=0.229 Sum_probs=19.5
Q ss_pred CCCHHHHHHHHHHhCcccccccc
Q psy9898 20 GVTIEEKIDALELLGASFANDKE 42 (82)
Q Consensus 20 ~~s~~~rIdALELLGATf~dkk~ 42 (82)
+.++++..+.++.+|+++.++-.
T Consensus 12 ~~~~~~l~~~i~~~Gg~v~~~~~ 34 (72)
T cd00027 12 SEERDELKELIEKLGGKVTSSVS 34 (72)
T ss_pred CcCHHHHHHHHHHcCCEEecccc
Confidence 46788999999999999988753
No 75
>PF10265 DUF2217: Uncharacterized conserved protein (DUF2217); InterPro: IPR019392 This is a family of conserved proteins varying in length from 500-600 residues. Their function is not known.
Probab=24.27 E-value=87 Score=26.67 Aligned_cols=18 Identities=17% Similarity=0.390 Sum_probs=16.2
Q ss_pred cHHHHHHHHHHHHHhHhC
Q psy9898 45 CLTSAFKYLYKTMQLRIG 62 (82)
Q Consensus 45 D~~~A~~~Wr~AM~lR~~ 62 (82)
-+..|++||.+|+..|++
T Consensus 142 afEeal~~WE~ALt~~~~ 159 (514)
T PF10265_consen 142 AFEEALRYWEQALTARQS 159 (514)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 468999999999999976
No 76
>PHA02736 Viral ankyrin protein; Provisional
Probab=23.69 E-value=71 Score=20.82 Aligned_cols=17 Identities=18% Similarity=0.237 Sum_probs=12.1
Q ss_pred hhhhhhHHHHHHHHhhc
Q psy9898 2 SAAERTQAEVVEFLVHK 18 (82)
Q Consensus 2 ~Aa~~g~~~Ive~Li~~ 18 (82)
.|+..|+.+++++|+.+
T Consensus 98 ~A~~~~~~~i~~~Ll~~ 114 (154)
T PHA02736 98 IAVYTQNYELATWLCNQ 114 (154)
T ss_pred HHHHhCCHHHHHHHHhC
Confidence 36677777777777764
No 77
>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain). PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation.
Probab=23.27 E-value=94 Score=22.42 Aligned_cols=20 Identities=35% Similarity=0.395 Sum_probs=15.5
Q ss_pred CHHHHHHHHHHhCccccccc
Q psy9898 22 TIEEKIDALELLGASFANDK 41 (82)
Q Consensus 22 s~~~rIdALELLGATf~dkk 41 (82)
++.+-.+|||||+..|.|..
T Consensus 72 ~~~~~~~aL~LL~~~~~~~~ 91 (184)
T smart00145 72 APLDPEDALELLSPKFPDPF 91 (184)
T ss_pred CCCCHHHHHHHhCccCCCHH
Confidence 34555799999999998654
No 78
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=23.08 E-value=1.3e+02 Score=18.52 Aligned_cols=26 Identities=12% Similarity=0.097 Sum_probs=11.3
Q ss_pred HHHHHhCcccccccccccHHHHHHHHHHH
Q psy9898 28 DALELLGASFANDKENYCLTSAFKYLYKT 56 (82)
Q Consensus 28 dALELLGATf~dkk~~~D~~~A~~~Wr~A 56 (82)
+++-.+|.++.... +...|.++|.++
T Consensus 18 ~~~~~~a~~~~~~~---~~~~A~~~~~~~ 43 (135)
T TIGR02552 18 EQIYALAYNLYQQG---RYDEALKLFQLL 43 (135)
T ss_pred HHHHHHHHHHHHcc---cHHHHHHHHHHH
Confidence 44444444444333 334444444443
No 79
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=22.88 E-value=74 Score=14.99 Aligned_cols=27 Identities=19% Similarity=0.239 Sum_probs=17.5
Q ss_pred HHHHhCcccccccccccHHHHHHHHHHHHH
Q psy9898 29 ALELLGASFANDKENYCLTSAFKYLYKTMQ 58 (82)
Q Consensus 29 ALELLGATf~dkk~~~D~~~A~~~Wr~AM~ 58 (82)
|+=-+|-.|.... |...|..+|++.+.
T Consensus 2 a~~~~a~~~~~~g---~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 2 ALYRLARCYYKLG---DYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHHC---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcc---CHHHHHHHHHHHHH
Confidence 4444555555433 77888998888765
No 80
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=22.63 E-value=70 Score=20.91 Aligned_cols=30 Identities=27% Similarity=0.154 Sum_probs=22.3
Q ss_pred HHHHHHHHhCcccccccccccHHHHHHHHHHHH
Q psy9898 25 EKIDALELLGASFANDKENYCLTSAFKYLYKTM 57 (82)
Q Consensus 25 ~rIdALELLGATf~dkk~~~D~~~A~~~Wr~AM 57 (82)
-+-.+.+++|=-|+.+. |...|...|++||
T Consensus 116 ~~~~~~~~~Gdi~~~~g---~~~~A~~~y~~Al 145 (145)
T PF09976_consen 116 FKALAAELLGDIYLAQG---DYDEARAAYQKAL 145 (145)
T ss_pred hHHHHHHHHHHHHHHCC---CHHHHHHHHHHhC
Confidence 34457778887777665 7788888888875
No 81
>PHA02791 ankyrin-like protein; Provisional
Probab=22.60 E-value=48 Score=25.15 Aligned_cols=17 Identities=6% Similarity=0.178 Sum_probs=13.9
Q ss_pred hhhhhhHHHHHHHHhhc
Q psy9898 2 SAAERTQAEVVEFLVHK 18 (82)
Q Consensus 2 ~Aa~~g~~~Ive~Li~~ 18 (82)
.||..|+.+||++|+++
T Consensus 166 ~Aa~~g~~eiv~lLL~~ 182 (284)
T PHA02791 166 ITIKNGHVDMMILLLDY 182 (284)
T ss_pred HHHHcCCHHHHHHHHHC
Confidence 47888888888888876
No 82
>PHA02874 ankyrin repeat protein; Provisional
Probab=22.58 E-value=56 Score=25.21 Aligned_cols=17 Identities=24% Similarity=0.473 Sum_probs=12.9
Q ss_pred hhhhhhHHHHHHHHhhc
Q psy9898 2 SAAERTQAEVVEFLVHK 18 (82)
Q Consensus 2 ~Aa~~g~~~Ive~Li~~ 18 (82)
.|+..|+.++|++|+++
T Consensus 41 ~A~~~g~~~iv~~Ll~~ 57 (434)
T PHA02874 41 DAIRSGDAKIVELFIKH 57 (434)
T ss_pred HHHHcCCHHHHHHHHHC
Confidence 47778888888888764
No 83
>PF10978 DUF2785: Protein of unknown function (DUF2785); InterPro: IPR021247 Some members in this family are annotated as hypothetical membrane spanning proteins however this cannot be confirmed. The family has no known function.
Probab=22.26 E-value=1.3e+02 Score=21.27 Aligned_cols=34 Identities=21% Similarity=0.297 Sum_probs=28.6
Q ss_pred hhhhHHHHHHHHhhccCCCHHHHHHHHHHhCccc
Q psy9898 4 AERTQAEVVEFLVHKSGVTIEEKIDALELLGASF 37 (82)
Q Consensus 4 a~~g~~~Ive~Li~~~~~s~~~rIdALELLGATf 37 (82)
|.+--.|++.-|+.+|..++.++++.|..+...|
T Consensus 70 a~AH~aD~l~el~~~p~~~~~~~~~lL~~i~~~~ 103 (175)
T PF10978_consen 70 AFAHGADLLDELVQHPELDRADKIELLAAILEKY 103 (175)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 4555678999999999999999999999986554
No 84
>cd04442 DEP_1_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 1 found in DEP6-like proteins. DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.
Probab=21.68 E-value=89 Score=19.98 Aligned_cols=12 Identities=17% Similarity=0.606 Sum_probs=9.3
Q ss_pred HHHHHHHhhccC
Q psy9898 9 AEVVEFLVHKSG 20 (82)
Q Consensus 9 ~~Ive~Li~~~~ 20 (82)
.|.|++|+++..
T Consensus 32 selVdWL~~~~~ 43 (82)
T cd04442 32 KELIDWLIEHKE 43 (82)
T ss_pred HHHHHHHHHcCC
Confidence 578999998754
No 85
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=21.29 E-value=2.7e+02 Score=18.74 Aligned_cols=48 Identities=10% Similarity=0.208 Sum_probs=35.0
Q ss_pred hHHHHHHHHhhccC--CCHHHHHHHHHHhCcccccccccccHHHHHHHHHHHHH
Q psy9898 7 TQAEVVEFLVHKSG--VTIEEKIDALELLGASFANDKENYCLTSAFKYLYKTMQ 58 (82)
Q Consensus 7 g~~~Ive~Li~~~~--~s~~~rIdALELLGATf~dkk~~~D~~~A~~~Wr~AM~ 58 (82)
+..+++++|..+++ +|+++.++++ -|..+-... +.+..-+...|+-+.
T Consensus 165 ~E~~lL~~L~~~~~~~~sr~~l~~~v--w~~~~~~~~--~~l~~~i~~LR~kl~ 214 (239)
T PRK09468 165 GEFAVLKALVSHPREPLSRDKLMNLA--RGREYSAME--RSIDVQISRLRRLIE 214 (239)
T ss_pred HHHHHHHHHHhCCCccCcHHHHHHHH--cCCCCCCCC--CCHHHHHHHHHHHhc
Confidence 45689999999987 5899888876 465543333 477788888887664
No 86
>PF00610 DEP: Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP); InterPro: IPR000591 This entry represents the DEP (Dishevelled, Egl-10 and Pleckstrin) domain, a globular domain of about 80 residues that is found in over 50 proteins involved in G-protein signalling pathways. It was named after the three proteins it was initially found in: Dishevelled (Dsh and Dvl), which play a key role in the transduction of the Wg/Wnt signal from the cell surface to the nucleus; it is a segment polarity protein required to establish coherent arrays of polarized cells and segments in embryos, and plays a role in wingless signalling. Egl-10, which regulates G-protein signalling in the central nervous system. Pleckstrin, the major substrate of protein kinase C in platelets; Pleckstrin contains two PH domains flanking the DEP domain. Mammalian regulators of G-protein signalling also contain these domains, and regulate signal transduction by increasing the GTPase activity of G-protein alpha subunits, thereby driving them into their inactive GDP-bound form. It has been proposed that the DEP domain could play a selective role in targeting DEP domain-containing proteins to specific subcellular membranous sites, perhaps even to specific G protein-coupled signaling pathways [, ]. Nuclear magnetic resonance spectroscopy has revealed that the DEP domain comprises a three-helix bundle, a beta-hairpin 'arm' composed of two beta-strands and two short beta-strands in the C-terminal region [].; GO: 0035556 intracellular signal transduction; PDB: 1UHW_A 1V3F_A 2YSR_A 2CSO_A 1W4M_A 2PBI_C 1O7F_A 2BYV_E 1FSH_A 3ML6_D ....
Probab=21.16 E-value=97 Score=18.12 Aligned_cols=10 Identities=30% Similarity=0.710 Sum_probs=7.8
Q ss_pred HHHHHHHhhc
Q psy9898 9 AEVVEFLVHK 18 (82)
Q Consensus 9 ~~Ive~Li~~ 18 (82)
.++|++|+++
T Consensus 21 ~e~v~WL~~~ 30 (74)
T PF00610_consen 21 SEAVDWLMDN 30 (74)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 5788999864
No 87
>PF09895 DUF2122: RecB-family nuclease (DUF2122); InterPro: IPR018665 This family of archaeal proteins include RecB nuclease-like proteins as well as proteins of no known function.
Probab=21.00 E-value=82 Score=21.37 Aligned_cols=35 Identities=20% Similarity=0.332 Sum_probs=27.1
Q ss_pred hhhhhhHHHHHHHHhhccC--CCHHHHHHHHHHhCcc
Q psy9898 2 SAAERTQAEVVEFLVHKSG--VTIEEKIDALELLGAS 36 (82)
Q Consensus 2 ~Aa~~g~~~Ive~Li~~~~--~s~~~rIdALELLGAT 36 (82)
+||..|=.++...-.+.-. .--++.-||+|+|+..
T Consensus 2 aAAQ~GIPe~~KlA~K~gk~livlpdl~DAiEvl~p~ 38 (106)
T PF09895_consen 2 AAAQQGIPEAFKLALKLGKSLIVLPDLKDAIEVLKPD 38 (106)
T ss_pred chhhhcCHHHHHHHHHcCCcEEEeCCHHHHHHhcCCc
Confidence 5899999999988777632 2456777999999975
No 88
>cd04371 DEP DEP domain, named after Dishevelled, Egl-10, and Pleckstrin, where this domain was first discovered. The function of this domain is still not clear, but it is believed to be important for the membrane association of the signaling proteins in which it is present. New studies show that the DEP domain of Sst2, a yeast RGS protein is necessary and sufficient for receptor interaction.
Probab=20.93 E-value=1e+02 Score=18.13 Aligned_cols=12 Identities=25% Similarity=0.565 Sum_probs=8.8
Q ss_pred HHHHHHHhhccC
Q psy9898 9 AEVVEFLVHKSG 20 (82)
Q Consensus 9 ~~Ive~Li~~~~ 20 (82)
.++|++|.++..
T Consensus 32 ~e~v~WL~~~~~ 43 (81)
T cd04371 32 SELVDWLLDNLE 43 (81)
T ss_pred HHHHHHHHHhCC
Confidence 478888888754
No 89
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=20.87 E-value=77 Score=18.32 Aligned_cols=18 Identities=33% Similarity=0.429 Sum_probs=14.5
Q ss_pred hhhhhhHHHHHHHHhhcc
Q psy9898 2 SAAERTQAEVVEFLVHKS 19 (82)
Q Consensus 2 ~Aa~~g~~~Ive~Li~~~ 19 (82)
.|+..|+.+++++|+...
T Consensus 13 ~a~~~~~~~~i~~li~~~ 30 (126)
T cd00204 13 LAASNGHLEVVKLLLENG 30 (126)
T ss_pred HHHHcCcHHHHHHHHHcC
Confidence 477888899999998754
No 90
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=20.69 E-value=1.8e+02 Score=22.98 Aligned_cols=51 Identities=20% Similarity=0.193 Sum_probs=32.4
Q ss_pred hHHHHHHHHhhccCCCHH-HH--HHHHHHhCcccccccccccHHHHHHHHHHHHHh
Q psy9898 7 TQAEVVEFLVHKSGVTIE-EK--IDALELLGASFANDKENYCLTSAFKYLYKTMQL 59 (82)
Q Consensus 7 g~~~Ive~Li~~~~~s~~-~r--IdALELLGATf~dkk~~~D~~~A~~~Wr~AM~l 59 (82)
++.++.+.|.++.+..-. .. =++++|..+..+..+ -|...|+...|+|.++
T Consensus 191 ~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~--GDAR~aidilr~A~ei 244 (366)
T COG1474 191 TAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAES--GDARKAIDILRRAGEI 244 (366)
T ss_pred CHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcC--ccHHHHHHHHHHHHHH
Confidence 355666666664321000 00 156777766666666 5999999999999987
No 91
>COG4132 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=20.68 E-value=1.1e+02 Score=24.17 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhCcccccccccccHHHHHHHHHHH
Q psy9898 23 IEEKIDALELLGASFANDKENYCLTSAFKYLYKT 56 (82)
Q Consensus 23 ~~~rIdALELLGATf~dkk~~~D~~~A~~~Wr~A 56 (82)
++|=.||-|.|||| ..||||+-
T Consensus 174 k~ewreaa~~LGa~------------~~qYWrmv 195 (282)
T COG4132 174 KKEWREAAAILGAT------------GWQYWRMV 195 (282)
T ss_pred HHHHHHHHHHhCCc------------hHHHHHHH
Confidence 56667999999986 46888853
No 92
>COG1308 EGD2 Transcription factor homologous to NACalpha-BTF3 [Transcription]
Probab=20.47 E-value=97 Score=21.72 Aligned_cols=25 Identities=40% Similarity=0.619 Sum_probs=20.5
Q ss_pred HHHHHHhhccCCCHHHHHHHHHHhC
Q psy9898 10 EVVEFLVHKSGVTIEEKIDALELLG 34 (82)
Q Consensus 10 ~Ive~Li~~~~~s~~~rIdALELLG 34 (82)
+=+++..++.++|+++-|.|||--|
T Consensus 86 eDIkLV~eQa~VsreeA~kAL~e~~ 110 (122)
T COG1308 86 EDIKLVMEQAGVSREEAIKALEEAG 110 (122)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 3367778899999999999998654
Done!