RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9898
(82 letters)
>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat,
phosphoserine binding domain, DNA repair, cell
division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces
pombe} PDB: 3l40_A*
Length = 220
Score = 28.8 bits (64), Expect = 0.14
Identities = 11/65 (16%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Query: 19 SGVTIEEKIDALELLGASFAND--KENYCLTSAFKYLYKTMQ-LRIGRIIMTPIYTTACV 75
+G + ID L+ L S ++ K + + K + + G ++T + +C+
Sbjct: 14 TGYDKKPSIDNLKKLDMSITSNPSKCTHLIAPRILRTSKFLCSIPYGPCVVTMDWINSCL 73
Query: 76 ILQKL 80
++
Sbjct: 74 KTHEI 78
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains
histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens}
PDB: 2azm_A* 3k05_A* 2ado_A
Length = 209
Score = 27.7 bits (61), Expect = 0.35
Identities = 12/65 (18%), Positives = 21/65 (32%), Gaps = 3/65 (4%)
Query: 19 SGVTIEEKIDALELLGASFANDKEN--YCLTSAFKYLYKTMQ-LRIGRIIMTPIYTTACV 75
+GV A+ LG S A + +T + K + L G I++ +
Sbjct: 18 TGVVDARGERAVLALGGSLAGSAAEASHLVTDRIRRTVKFLCALGRGIPILSLDWLHQSR 77
Query: 76 ILQKL 80
Sbjct: 78 KAGFF 82
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A;
1.80A {Homo sapiens} SCOP: d.211.1.1
Length = 285
Score = 27.4 bits (62), Expect = 0.43
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 1 MSAAERTQAEVVEFLVHKSGVTIEEK 26
M AAE+ EV++ L+ + G +
Sbjct: 153 MDAAEKGHVEVLKILLDEMGADVNAC 178
Score = 26.7 bits (60), Expect = 0.75
Identities = 5/26 (19%), Positives = 13/26 (50%)
Query: 1 MSAAERTQAEVVEFLVHKSGVTIEEK 26
+ A E+ +V+ L+ + + I +
Sbjct: 224 ILAVEKKHLGLVQRLLEQEHIEINDT 249
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix,
ankyrin repeat, gene regulation/signalling protein/DNA
complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Length = 373
Score = 26.8 bits (60), Expect = 0.66
Identities = 6/26 (23%), Positives = 15/26 (57%)
Query: 1 MSAAERTQAEVVEFLVHKSGVTIEEK 26
AA+ + +V++LV + G +++
Sbjct: 284 HYAAQVSNMPIVKYLVGEKGSNKDKQ 309
Score = 23.8 bits (52), Expect = 9.7
Identities = 9/26 (34%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 1 MSAAERTQAEVVEFLVHKSGVTIEEK 26
M AA+ + EVV +L+ + G ++E
Sbjct: 318 MLAAQEGRIEVVMYLIQQ-GASVEAV 342
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A
1ixv_A 1wg0_A
Length = 228
Score = 26.3 bits (59), Expect = 1.0
Identities = 5/26 (19%), Positives = 7/26 (26%)
Query: 1 MSAAERTQAEVVEFLVHKSGVTIEEK 26
A + LV K G +
Sbjct: 179 FHALAEGHGDAAVLLVEKYGAEYDLV 204
Score = 23.6 bits (52), Expect = 8.7
Identities = 4/26 (15%), Positives = 9/26 (34%)
Query: 1 MSAAERTQAEVVEFLVHKSGVTIEEK 26
AA +++E L + +
Sbjct: 145 HRAASVGSLKLIELLCGLGKSAVNWQ 170
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.0 bits (56), Expect = 1.6
Identities = 13/87 (14%), Positives = 31/87 (35%), Gaps = 15/87 (17%)
Query: 3 AAERTQAEVVE----FLVH--KSG--VTIEEKIDALELLGASFANDKENYC----LTSAF 50
A + + V+ F + + E ++ L+ L N+ +S
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL---LYQIDPNWTSRSDHSSNI 223
Query: 51 KYLYKTMQLRIGRIIMTPIYTTACVIL 77
K ++Q + R++ + Y ++L
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVL 250
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix,
SH3, ankyrin repeat, signaling protein, ANK repeat,
cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB:
3ehq_A
Length = 222
Score = 25.7 bits (57), Expect = 1.7
Identities = 4/26 (15%), Positives = 11/26 (42%)
Query: 1 MSAAERTQAEVVEFLVHKSGVTIEEK 26
A ++VE L + + + ++
Sbjct: 111 YWACHGGHKDIVEMLFTQPNIELNQQ 136
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase
(M130), serine/threonine protein phosphatase PP1-beta
(OR delta) catalytic subunit; myosin phosphatase; HET:
PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Length = 299
Score = 25.5 bits (57), Expect = 1.7
Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 9/40 (22%)
Query: 3 AAERTQAEVVEFLVHKSGVTIEEK---------IDALELL 33
A E E+++ V++ GV IE DA + L
Sbjct: 146 AEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWL 185
>2fur_A Hypothetical protein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: MSE; 1.80A {Thermoplasma acidophilum} SCOP:
b.45.1.1
Length = 209
Score = 25.7 bits (56), Expect = 1.8
Identities = 6/38 (15%), Positives = 15/38 (39%)
Query: 24 EEKIDALELLGASFANDKENYCLTSAFKYLYKTMQLRI 61
E+KI+ LL + + + +++ L +
Sbjct: 118 EKKIEVFRLLTEKLVKGRWDNSIKPSYEDLNGVFVFAV 155
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex,
hydrolase/DNA complex complex; 3.00A {Sulfolobus
solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Length = 500
Score = 25.2 bits (56), Expect = 2.6
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 22 TIEEKIDAL 30
T+EEKID L
Sbjct: 454 TLEEKIDQL 462
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP
system, signal sequence, ankyrin repeat, chromodomain,
type I turn; 1.50A {Arabidopsis thaliana} SCOP:
b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Length = 183
Score = 24.8 bits (55), Expect = 3.1
Identities = 3/26 (11%), Positives = 10/26 (38%), Gaps = 2/26 (7%)
Query: 1 MSAAERTQAEVVEFLVHKSGVTIEEK 26
+AA + + + L+ ++
Sbjct: 49 WTAARKADEQALSQLLE--DRDVDAV 72
Score = 23.6 bits (52), Expect = 8.8
Identities = 5/33 (15%), Positives = 10/33 (30%), Gaps = 2/33 (6%)
Query: 1 MSAAERTQAEVVEFLVHKSGVTIEEKIDALELL 33
A E + + G I + + +L
Sbjct: 148 ELAREILKTTPKGNPMQF-GRRIGLE-KVINVL 178
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A
1blx_B
Length = 156
Score = 24.7 bits (55), Expect = 3.6
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 1 MSAAERTQAEVVEFLVHKSGVTIEEK 26
AA R + V L+H+ V +
Sbjct: 7 SGAAARGDVQEVRRLLHRELVHPDAL 32
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction,
substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A
{Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A
3twx_A 3twq_A 3twu_A 2y0i_S*
Length = 165
Score = 24.7 bits (55), Expect = 3.6
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 3 AAERTQAEVVEFLVHKSGVTIEEK 26
AA+ E V+ L V +
Sbjct: 15 AAKAGDVETVKKLCTVQSVNCRDI 38
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat,
chromodomain, aromatic CAGE, signal recognit particle,
protein targeting; 3.18A {Arabidopsis thaliana} PDB:
1x3q_A 2hug_A
Length = 244
Score = 24.5 bits (54), Expect = 4.1
Identities = 6/42 (14%), Positives = 11/42 (26%), Gaps = 2/42 (4%)
Query: 1 MSAAERTQAEVVEFLVHKSGVTIEEKIDALELLGASFANDKE 42
A E + + G I + + +L E
Sbjct: 149 ELAREILKTTPKGNPMQF-GRRIGLE-KVINVLEGQVFEYAE 188
Score = 24.5 bits (54), Expect = 4.5
Identities = 3/26 (11%), Positives = 10/26 (38%), Gaps = 2/26 (7%)
Query: 1 MSAAERTQAEVVEFLVHKSGVTIEEK 26
+AA + + + L+ ++
Sbjct: 50 WTAARKADEQALSQLLE--DRDVDAV 73
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination,
hydrolase-recombination complex; 2.00A {Sulfolobus
solfataricus} SCOP: c.37.1.19
Length = 271
Score = 24.5 bits (54), Expect = 4.4
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 22 TIEEKIDAL 30
T+EEKID L
Sbjct: 225 TLEEKIDQL 233
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 24.6 bits (53), Expect = 4.8
Identities = 7/35 (20%), Positives = 17/35 (48%), Gaps = 5/35 (14%)
Query: 9 AEVVEF-----LVHKSGVTIEEKIDALELLGASFA 38
A+V+ +V G+T++ + EL +++
Sbjct: 1774 ADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYG 1808
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A
{Enterococcus faecalis}
Length = 201
Score = 24.3 bits (54), Expect = 5.3
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 1 MSAAERTQAEVVEFLVHKSGVTIEEK 26
+ AAE+ + V+ L+ I+ +
Sbjct: 111 IPAAEKGHIDNVKLLLEDGREDIDFQ 136
Score = 23.6 bits (52), Expect = 8.3
Identities = 8/66 (12%), Positives = 15/66 (22%), Gaps = 20/66 (30%)
Query: 1 MSAAERTQAEVVEFLVHKSGVTIEEK----------------IDALELL---GASFANDK 41
A E+ + L+ + G I + + L + N
Sbjct: 44 NIAVHNNDIEIAKALIDR-GADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKH 102
Query: 42 ENYCLT 47
Y
Sbjct: 103 NRYGGN 108
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats,
methyllyine binding, huntingti interacting protein 14,
acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo
sapiens}
Length = 240
Score = 23.9 bits (53), Expect = 6.1
Identities = 6/26 (23%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 1 MSAAERTQAEVVEFLVHKSGVTIEEK 26
AA+ +V +L+ K G ++
Sbjct: 114 HLAAQFGHTSIVAYLIAK-GQDVDMM 138
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 24.1 bits (53), Expect = 6.1
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 1 MSAAERTQAEVVEFLVHKSGVTIEEK 26
+A E+V+FLV GV +
Sbjct: 75 HNAVCAGHTEIVKFLVQF-GVNVNAA 99
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo
protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Length = 110
Score = 23.7 bits (52), Expect = 7.6
Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 1 MSAAERTQAEVVEFLVHKSGVTIEEK 26
+ AA Q + V L+ +G + K
Sbjct: 29 LEAARAGQDDEVRILM-ANGADVAAK 53
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1,
ankyrin repeat domain, transport protein; HET: ATP;
2.70A {Rattus norvegicus} PDB: 2nyj_A*
Length = 273
Score = 24.0 bits (52), Expect = 8.3
Identities = 7/24 (29%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 3 AAERTQAEVVEFLVHKSGVTIEEK 26
A ER +V LV ++G ++
Sbjct: 108 AIERRNMTLVTLLV-ENGADVQAA 130
>3v31_A Ankyrin repeat family A protein 2; structural genomics
consortium, SGC, ankra2, ANK repeat, Pro binding,
HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Length = 167
Score = 23.5 bits (52), Expect = 8.7
Identities = 6/26 (23%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 1 MSAAERTQAEVVEFLVHKSGVTIEEK 26
A + ++V+ L+ GV + E
Sbjct: 74 SLACSKGYTDIVKMLL-DCGVDVNEY 98
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor,
cytoplasm, phosphorylation, P53 binding protein, ANK
repeat, SH3 domain; 2.10A {Homo sapiens}
Length = 229
Score = 23.8 bits (52), Expect = 8.8
Identities = 9/46 (19%), Positives = 16/46 (34%), Gaps = 7/46 (15%)
Query: 1 MSAAERTQAEVVEFLVHKSGVTIEEKID----ALELLGASFANDKE 42
+ AA + EVV+ V + + + AL A +
Sbjct: 26 LDAALTGELEVVQQAVKE-MNDPSQPNEEGITALHN--AICGANYS 68
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit);
transcription factor, IKB/NFKB complex; 2.30A {Homo
sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Length = 236
Score = 23.7 bits (52), Expect = 9.3
Identities = 10/44 (22%), Positives = 13/44 (29%), Gaps = 7/44 (15%)
Query: 3 AAERTQAEVVEFLVHKSGVTIEEKID----ALELLGASFANDKE 42
A Q E+ E L+ G E + L L A
Sbjct: 52 AVITNQPEIAEALLGA-GCDPELRDFRGNTPLHL--ACEQGCLA 92
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.135 0.370
Gapped
Lambda K H
0.267 0.0902 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,193,244
Number of extensions: 58168
Number of successful extensions: 274
Number of sequences better than 10.0: 1
Number of HSP's gapped: 274
Number of HSP's successfully gapped: 49
Length of query: 82
Length of database: 6,701,793
Length adjustment: 51
Effective length of query: 31
Effective length of database: 5,277,822
Effective search space: 163612482
Effective search space used: 163612482
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.1 bits)