RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9898
         (82 letters)



>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 156

 Score = 25.9 bits (55), Expect = 0.51
 Identities = 7/26 (26%), Positives = 11/26 (42%)

Query: 1  MSAAERTQAEVVEFLVHKSGVTIEEK 26
            AA R   + V  L+H+  V  +  
Sbjct: 7  SGAAARGDVQEVRRLLHRELVHPDAL 32


>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 285

 Score = 25.7 bits (55), Expect = 0.72
 Identities = 9/53 (16%), Positives = 20/53 (37%)

Query: 1   MSAAERTQAEVVEFLVHKSGVTIEEKIDALELLGASFANDKENYCLTSAFKYL 53
           M AAE+   EV++ L+ + G  +    +             ++  + +    L
Sbjct: 153 MDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLL 205


>d2z9ia2 b.47.1.1 (A:6-226) Protease PepD {Mycobacterium
          tuberculosis [TaxId: 1773]}
          Length = 221

 Score = 24.2 bits (51), Expect = 2.1
 Identities = 9/42 (21%), Positives = 14/42 (33%), Gaps = 1/42 (2%)

Query: 9  AEVVEFLVHKSGVTIEEKIDALELLGASFANDKENYCLTSAF 50
           +V    V  S V +E  +      G+      E   LT+  
Sbjct: 4  EQVAA-KVVPSVVMLETDLGRQSEEGSGIILSAEGLILTNNH 44


>d2fura1 b.45.1.1 (A:16-208) Hypothetical protein Ta1372
           {Thermoplasma acidophilum [TaxId: 2303]}
          Length = 193

 Score = 23.4 bits (50), Expect = 3.5
 Identities = 6/38 (15%), Positives = 15/38 (39%)

Query: 24  EEKIDALELLGASFANDKENYCLTSAFKYLYKTMQLRI 61
           E+KI+   LL       + +  +  +++ L       +
Sbjct: 102 EKKIEVFRLLTEKLVKGRWDNSIKPSYEDLNGVFVFAV 139


>d1lb2b_ a.60.3.1 (B:) C-terminal domain of RNA polymerase alpha
          subunit {Escherichia coli [TaxId: 562]}
          Length = 72

 Score = 22.7 bits (49), Expect = 4.9
 Identities = 7/23 (30%), Positives = 10/23 (43%)

Query: 22 TIEEKIDALELLGASFANDKENY 44
          ++ E  D L   G S     EN+
Sbjct: 50 SLTEIKDVLASRGLSLGMRLENW 72


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.135    0.370 

Gapped
Lambda     K      H
   0.267   0.0415    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 279,879
Number of extensions: 10415
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 5
Length of query: 82
Length of database: 2,407,596
Length adjustment: 48
Effective length of query: 34
Effective length of database: 1,748,556
Effective search space: 59450904
Effective search space used: 59450904
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)