BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9900
(191 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|156385226|ref|XP_001633532.1| predicted protein [Nematostella vectensis]
gi|156220603|gb|EDO41469.1| predicted protein [Nematostella vectensis]
Length = 98
Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 49/89 (55%), Positives = 65/89 (73%)
Query: 103 FFPAVHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDF 162
F A V G VK+++ K G+GFI R DNKEDIFVH+++I K NPKK+ +S+G GE+V+F
Sbjct: 1 MFIAATKVTGTVKWFNVKNGYGFINRDDNKEDIFVHQTAIAKNNPKKYLRSVGDGEVVEF 60
Query: 163 NIGVGKKDIEAINVTGPNGIPVQGAPKVP 191
N+ G K +EA NVTGP+G PVQG+ P
Sbjct: 61 NVVSGTKGLEASNVTGPDGEPVQGSKYAP 89
Score = 99.4 bits (246), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 46/78 (58%), Positives = 62/78 (79%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ K G+GFI R DNKEDIFVH+++I K NPKK+ +S+G GE+V+FN+ G K
Sbjct: 8 VTGTVKWFNVKNGYGFINRDDNKEDIFVHQTAIAKNNPKKYLRSVGDGEVVEFNVVSGTK 67
Query: 69 DIEAINVTGPNGIPVQGA 86
+EA NVTGP+G PVQG+
Sbjct: 68 GLEASNVTGPDGEPVQGS 85
>gi|91081961|ref|XP_966594.1| PREDICTED: similar to Y-box binding protein isoform 1 [Tribolium
castaneum]
gi|270007364|gb|EFA03812.1| hypothetical protein TcasGA2_TC013925 [Tribolium castaneum]
Length = 297
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/79 (59%), Positives = 63/79 (79%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ K G+GFI R D KED+FVH+S+I+K NPKK +S+G GEIV+F++ VG+K
Sbjct: 29 VTGTVKWFNVKSGYGFINRNDTKEDVFVHQSAIIKNNPKKAVRSVGDGEIVEFSVVVGEK 88
Query: 69 DIEAINVTGPNGIPVQGAP 87
EA NVTGPNG PV+G+P
Sbjct: 89 GNEAANVTGPNGEPVRGSP 107
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/79 (59%), Positives = 63/79 (79%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ K G+GFI R D KED+FVH+S+I+K NPKK +S+G GEIV+F++ VG+K
Sbjct: 29 VTGTVKWFNVKSGYGFINRNDTKEDVFVHQSAIIKNNPKKAVRSVGDGEIVEFSVVVGEK 88
Query: 170 DIEAINVTGPNGIPVQGAP 188
EA NVTGPNG PV+G+P
Sbjct: 89 GNEAANVTGPNGEPVRGSP 107
>gi|91081963|ref|XP_975913.1| PREDICTED: similar to Y-box binding protein isoform 2 [Tribolium
castaneum]
Length = 286
Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 47/79 (59%), Positives = 63/79 (79%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ K G+GFI R D KED+FVH+S+I+K NPKK +S+G GEIV+F++ VG+K
Sbjct: 29 VTGTVKWFNVKSGYGFINRNDTKEDVFVHQSAIIKNNPKKAVRSVGDGEIVEFSVVVGEK 88
Query: 69 DIEAINVTGPNGIPVQGAP 87
EA NVTGPNG PV+G+P
Sbjct: 89 GNEAANVTGPNGEPVRGSP 107
Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 47/79 (59%), Positives = 63/79 (79%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ K G+GFI R D KED+FVH+S+I+K NPKK +S+G GEIV+F++ VG+K
Sbjct: 29 VTGTVKWFNVKSGYGFINRNDTKEDVFVHQSAIIKNNPKKAVRSVGDGEIVEFSVVVGEK 88
Query: 170 DIEAINVTGPNGIPVQGAP 188
EA NVTGPNG PV+G+P
Sbjct: 89 GNEAANVTGPNGEPVRGSP 107
>gi|391342360|ref|XP_003745488.1| PREDICTED: uncharacterized protein LOC100904956 [Metaseiulus
occidentalis]
Length = 309
Score = 99.4 bits (246), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 46/83 (55%), Positives = 65/83 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
VRG VK+++ K G+GFI R D KEDIFVH+++I+K NP+K +S+G GE V+F++ VG+K
Sbjct: 33 VRGTVKWFNVKNGYGFINRNDTKEDIFVHQTAIMKNNPQKAVRSVGEGEEVEFDVVVGEK 92
Query: 69 DIEAINVTGPNGIPVQGAPKSSS 91
EA NVTGP G PVQG+P +++
Sbjct: 93 GNEASNVTGPEGAPVQGSPYAAN 115
Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 46/82 (56%), Positives = 62/82 (75%)
Query: 107 VHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGV 166
VRG VK+++ K G+GFI R D KEDIFVH+++I+K NP+K +S+G GE V+F++ V
Sbjct: 30 AERVRGTVKWFNVKNGYGFINRNDTKEDIFVHQTAIMKNNPQKAVRSVGEGEEVEFDVVV 89
Query: 167 GKKDIEAINVTGPNGIPVQGAP 188
G+K EA NVTGP G PVQG+P
Sbjct: 90 GEKGNEASNVTGPEGAPVQGSP 111
>gi|22901742|gb|AAN10050.1| Y-box protein Ct-p50 [Chironomus tentans]
Length = 317
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/79 (56%), Positives = 62/79 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ K G+GFI R DNK+DIFVH+S+I+K NPKK +S+G GE+V+F++ G+K
Sbjct: 30 VTGTVKWFNVKSGYGFINRNDNKQDIFVHQSAIIKNNPKKAVRSVGDGEVVEFDVVAGEK 89
Query: 69 DIEAINVTGPNGIPVQGAP 87
EA NVTGP G PV+G+P
Sbjct: 90 GSEAANVTGPEGEPVKGSP 108
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/79 (56%), Positives = 62/79 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ K G+GFI R DNK+DIFVH+S+I+K NPKK +S+G GE+V+F++ G+K
Sbjct: 30 VTGTVKWFNVKSGYGFINRNDNKQDIFVHQSAIIKNNPKKAVRSVGDGEVVEFDVVAGEK 89
Query: 170 DIEAINVTGPNGIPVQGAP 188
EA NVTGP G PV+G+P
Sbjct: 90 GSEAANVTGPEGEPVKGSP 108
>gi|22901740|gb|AAN10049.1| Y-box protein Ct-p40 [Chironomus tentans]
Length = 264
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/79 (56%), Positives = 62/79 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ K G+GFI R DNK+DIFVH+S+I+K NPKK +S+G GE+V+F++ G+K
Sbjct: 30 VTGTVKWFNVKSGYGFINRNDNKQDIFVHQSAIIKNNPKKAVRSVGDGEVVEFDVVAGEK 89
Query: 69 DIEAINVTGPNGIPVQGAP 87
EA NVTGP G PV+G+P
Sbjct: 90 GSEAANVTGPEGEPVKGSP 108
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/79 (56%), Positives = 62/79 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ K G+GFI R DNK+DIFVH+S+I+K NPKK +S+G GE+V+F++ G+K
Sbjct: 30 VTGTVKWFNVKSGYGFINRNDNKQDIFVHQSAIIKNNPKKAVRSVGDGEVVEFDVVAGEK 89
Query: 170 DIEAINVTGPNGIPVQGAP 188
EA NVTGP G PV+G+P
Sbjct: 90 GSEAANVTGPEGEPVKGSP 108
>gi|30089118|emb|CAD27800.1| Y1 protein [Dugesia etrusca]
Length = 280
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/99 (49%), Positives = 74/99 (74%), Gaps = 3/99 (3%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+ G VK+++ K G+GFI R DN+EDIFVH+++I+K NP+K+ +S+G GE V+F++ G+K
Sbjct: 30 INGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSVGDGEEVEFDVVEGEK 89
Query: 69 DIEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAV 107
+EA NVTGP+GIPVQG+ ++ + YR+ SF AV
Sbjct: 90 GLEAANVTGPDGIPVQGSKYAADKR---HYRSRSFGRAV 125
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/78 (55%), Positives = 64/78 (82%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+ G VK+++ K G+GFI R DN+EDIFVH+++I+K NP+K+ +S+G GE V+F++ G+K
Sbjct: 30 INGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSVGDGEEVEFDVVEGEK 89
Query: 170 DIEAINVTGPNGIPVQGA 187
+EA NVTGP+GIPVQG+
Sbjct: 90 GLEAANVTGPDGIPVQGS 107
>gi|342837647|tpg|DAA34914.1| TPA_inf: Y box protein 4-like protein [Schmidtea mediterranea]
Length = 378
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/99 (49%), Positives = 74/99 (74%), Gaps = 3/99 (3%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+ G VK+++ K G+GFI R DN+EDIFVH+++I+K NP+K+ +S+G GE V+F++ G+K
Sbjct: 25 INGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSVGDGEEVEFDVVEGEK 84
Query: 69 DIEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAV 107
+EA NVTGP+GIPVQG+ ++ + YR+ SF AV
Sbjct: 85 GLEAANVTGPDGIPVQGSKYAADKR---HYRSRSFGRAV 120
Score = 95.9 bits (237), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 43/78 (55%), Positives = 64/78 (82%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+ G VK+++ K G+GFI R DN+EDIFVH+++I+K NP+K+ +S+G GE V+F++ G+K
Sbjct: 25 INGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSVGDGEEVEFDVVEGEK 84
Query: 170 DIEAINVTGPNGIPVQGA 187
+EA NVTGP+GIPVQG+
Sbjct: 85 GLEAANVTGPDGIPVQGS 102
>gi|242008099|ref|XP_002424850.1| Nuclease sensitive element-binding protein, putative [Pediculus
humanus corporis]
gi|212508400|gb|EEB12112.1| Nuclease sensitive element-binding protein, putative [Pediculus
humanus corporis]
Length = 288
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/82 (56%), Positives = 64/82 (78%)
Query: 107 VHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGV 166
+ V G VK+++ K G+GFI R D KED+FVH+++IVK NPKKF +S+G GE+V+F++ V
Sbjct: 22 ANKVTGTVKWFNVKSGYGFINRDDTKEDVFVHQTAIVKNNPKKFVRSVGDGEVVEFDVVV 81
Query: 167 GKKDIEAINVTGPNGIPVQGAP 188
G+K EA NVTGPNG V+G+P
Sbjct: 82 GEKGNEAANVTGPNGEAVKGSP 103
Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/82 (56%), Positives = 64/82 (78%)
Query: 6 IHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGV 65
+ V G VK+++ K G+GFI R D KED+FVH+++IVK NPKKF +S+G GE+V+F++ V
Sbjct: 22 ANKVTGTVKWFNVKSGYGFINRDDTKEDVFVHQTAIVKNNPKKFVRSVGDGEVVEFDVVV 81
Query: 66 GKKDIEAINVTGPNGIPVQGAP 87
G+K EA NVTGPNG V+G+P
Sbjct: 82 GEKGNEAANVTGPNGEAVKGSP 103
>gi|383849814|ref|XP_003700531.1| PREDICTED: uncharacterized protein LOC100878915 [Megachile
rotundata]
Length = 278
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 75/120 (62%), Gaps = 14/120 (11%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ K G+GFI R D KED+FVH+S+IVK NP+K +S+G GE+V+F++ VG K
Sbjct: 24 VTGTVKWFNVKSGYGFINRNDTKEDVFVHQSAIVKNNPRKAVRSVGDGEVVEFDVVVGDK 83
Query: 69 DIEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFITR 128
EA NVTGP+G PV+G+P ++ + RG+ F + +RG G R
Sbjct: 84 GHEAANVTGPSGEPVKGSPYAADKR--------------RGYRGVHWFNNQRRGNGRPQR 129
Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 45/79 (56%), Positives = 62/79 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ K G+GFI R D KED+FVH+S+IVK NP+K +S+G GE+V+F++ VG K
Sbjct: 24 VTGTVKWFNVKSGYGFINRNDTKEDVFVHQSAIVKNNPRKAVRSVGDGEVVEFDVVVGDK 83
Query: 170 DIEAINVTGPNGIPVQGAP 188
EA NVTGP+G PV+G+P
Sbjct: 84 GHEAANVTGPSGEPVKGSP 102
>gi|374533674|gb|AEZ53750.1| cold shock domain protein A, partial [Scaphiopus holbrookii]
Length = 236
Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V+G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE+V+F++ G+K
Sbjct: 31 VQGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGEVVEFDVVAGEK 90
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G PVQG+
Sbjct: 91 GAEAANVTGPKGAPVQGS 108
Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 61/78 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V+G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE+V+F++ G+K
Sbjct: 31 VQGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGEVVEFDVVAGEK 90
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G PVQG+
Sbjct: 91 GAEAANVTGPKGAPVQGS 108
>gi|291390788|ref|XP_002711897.1| PREDICTED: cold shock domain protein A short-like [Oryctolagus
cuniculus]
Length = 784
Score = 96.7 bits (239), Expect = 4e-18, Method: Composition-based stats.
Identities = 52/134 (38%), Positives = 73/134 (54%), Gaps = 19/134 (14%)
Query: 77 GPNGIPVQGAPKSSSE---------TVSGTYRNDSFFPAV----------HTVRGIVKFY 117
G G+ GAP+S +E T+ T P + V G VK++
Sbjct: 518 GRAGMGSPGAPRSPTEAWLPQPALVTIPATSTTGRGLPGLAPAGDKKIIARKVLGTVKWF 577
Query: 118 DSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVT 177
+ K+G+GFI R D+KED+FVH ++I K NP+K+ S+G GE V+ ++ G K EA NVT
Sbjct: 578 NVKKGYGFIHRHDSKEDVFVHHTAITKNNPRKYLHSVGDGETVELDVVEGVKGAEAANVT 637
Query: 178 GPNGIPVQGAPKVP 191
GP G PVQG+ P
Sbjct: 638 GPGGAPVQGSQYAP 651
Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats.
Identities = 43/90 (47%), Positives = 60/90 (66%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ K+G+GFI R D+KED+FVH ++I K NP+K+ S+G GE V+ ++ G K
Sbjct: 570 VLGTVKWFNVKKGYGFIHRHDSKEDVFVHHTAITKNNPRKYLHSVGDGETVELDVVEGVK 629
Query: 69 DIEAINVTGPNGIPVQGAPKSSSETVSGTY 98
EA NVTGP G PVQG+ + G Y
Sbjct: 630 GAEAANVTGPGGAPVQGSQYAPERGHYGRY 659
>gi|374533672|gb|AEZ53749.1| cold shock domain protein A, partial [Scaphiopus couchii]
Length = 241
Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V+G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE+V+F++ G+K
Sbjct: 37 VQGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGEVVEFDVVAGEK 96
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G PVQG+
Sbjct: 97 GAEAANVTGPKGAPVQGS 114
Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 61/78 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V+G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE+V+F++ G+K
Sbjct: 37 VQGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGEVVEFDVVAGEK 96
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G PVQG+
Sbjct: 97 GAEAANVTGPKGAPVQGS 114
>gi|374533670|gb|AEZ53748.1| cold shock domain protein A, partial [Spea multiplicata]
Length = 240
Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V+G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE+V+F++ G+K
Sbjct: 37 VQGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGEVVEFDVVAGEK 96
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G PVQG+
Sbjct: 97 GAEAANVTGPKGAPVQGS 114
Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 61/78 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V+G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE+V+F++ G+K
Sbjct: 37 VQGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGEVVEFDVVAGEK 96
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G PVQG+
Sbjct: 97 GAEAANVTGPKGAPVQGS 114
>gi|62751871|ref|NP_001015855.1| cold shock domain protein A [Xenopus (Silurana) tropicalis]
gi|59861901|gb|AAH90361.1| cold shock domain protein A [Xenopus (Silurana) tropicalis]
Length = 248
Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V+G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE+V+F++ G+K
Sbjct: 36 VQGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGEVVEFDVVAGEK 95
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G PVQG+
Sbjct: 96 GAEAANVTGPKGAPVQGS 113
Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 61/78 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V+G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE+V+F++ G+K
Sbjct: 36 VQGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGEVVEFDVVAGEK 95
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G PVQG+
Sbjct: 96 GAEAANVTGPKGAPVQGS 113
>gi|374533668|gb|AEZ53747.1| cold shock domain protein A, partial [Spea bombifrons]
Length = 245
Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V+G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE+V+F++ G+K
Sbjct: 37 VQGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGEVVEFDVVAGEK 96
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G PVQG+
Sbjct: 97 GAEAANVTGPKGAPVQGS 114
Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 61/78 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V+G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE+V+F++ G+K
Sbjct: 37 VQGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGEVVEFDVVAGEK 96
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G PVQG+
Sbjct: 97 GAEAANVTGPKGAPVQGS 114
>gi|242008101|ref|XP_002424851.1| Y box binding protein, putative [Pediculus humanus corporis]
gi|212508401|gb|EEB12113.1| Y box binding protein, putative [Pediculus humanus corporis]
Length = 264
Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 46/82 (56%), Positives = 62/82 (75%)
Query: 107 VHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGV 166
+ V G VK+++ K G+GFI R D KED+FVH+S+IVK NPKK +S+G GE+V+F++ V
Sbjct: 21 ANKVTGTVKWFNVKSGYGFINRNDTKEDVFVHQSAIVKNNPKKLVRSVGDGEVVEFDVVV 80
Query: 167 GKKDIEAINVTGPNGIPVQGAP 188
G K EA NVTGPNG V+G+P
Sbjct: 81 GGKGNEAANVTGPNGEAVKGSP 102
Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 46/82 (56%), Positives = 62/82 (75%)
Query: 6 IHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGV 65
+ V G VK+++ K G+GFI R D KED+FVH+S+IVK NPKK +S+G GE+V+F++ V
Sbjct: 21 ANKVTGTVKWFNVKSGYGFINRNDTKEDVFVHQSAIVKNNPKKLVRSVGDGEVVEFDVVV 80
Query: 66 GKKDIEAINVTGPNGIPVQGAP 87
G K EA NVTGPNG V+G+P
Sbjct: 81 GGKGNEAANVTGPNGEAVKGSP 102
>gi|158934472|emb|CAL64870.1| putative RlYB2 protein [Pelophylax lessonae]
Length = 327
Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 66/94 (70%)
Query: 94 VSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQS 153
+G RN + V+G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +S
Sbjct: 20 TAGPNRNQAKKVLATQVQGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRS 79
Query: 154 LGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGA 187
+G GE V+F++ G+K EA NVTGP G+PV+G+
Sbjct: 80 VGDGETVEFDVVEGEKGAEAANVTGPGGVPVKGS 113
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V+G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +S+G GE V+F++ G+K
Sbjct: 36 VQGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEK 95
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PV+G+
Sbjct: 96 GAEAANVTGPGGVPVKGS 113
>gi|242000494|ref|XP_002434890.1| PIN domain-containing RNA-binding protein, putative [Ixodes
scapularis]
gi|215498220|gb|EEC07714.1| PIN domain-containing RNA-binding protein, putative [Ixodes
scapularis]
Length = 315
Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 61/82 (74%)
Query: 107 VHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGV 166
V G VK+++ K G+GFI R D +EDIFVH+++I + NP+K +S+G GE V+F++ V
Sbjct: 14 AERVLGTVKWFNVKNGYGFINRNDTREDIFVHQTAITRNNPQKIMRSVGEGETVEFDVVV 73
Query: 167 GKKDIEAINVTGPNGIPVQGAP 188
G+K EA NVTGP+G PVQG+P
Sbjct: 74 GEKGREAANVTGPDGEPVQGSP 95
Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 43/79 (54%), Positives = 61/79 (77%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ K G+GFI R D +EDIFVH+++I + NP+K +S+G GE V+F++ VG+K
Sbjct: 17 VLGTVKWFNVKNGYGFINRNDTREDIFVHQTAITRNNPQKIMRSVGEGETVEFDVVVGEK 76
Query: 69 DIEAINVTGPNGIPVQGAP 87
EA NVTGP+G PVQG+P
Sbjct: 77 GREAANVTGPDGEPVQGSP 95
>gi|449482154|ref|XP_002188961.2| PREDICTED: uncharacterized protein LOC100227889 [Taeniopygia
guttata]
Length = 486
Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 43/84 (51%), Positives = 64/84 (76%), Gaps = 1/84 (1%)
Query: 104 FPAVHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFN 163
FPA V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F+
Sbjct: 271 FPATK-VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFD 329
Query: 164 IGVGKKDIEAINVTGPNGIPVQGA 187
+ G+K EA NVTGP+G+PV+G+
Sbjct: 330 VVEGEKGAEAANVTGPDGVPVEGS 353
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/83 (49%), Positives = 62/83 (74%)
Query: 4 FEIHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
F V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++
Sbjct: 271 FPATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDV 330
Query: 64 GVGKKDIEAINVTGPNGIPVQGA 86
G+K EA NVTGP+G+PV+G+
Sbjct: 331 VEGEKGAEAANVTGPDGVPVEGS 353
>gi|195327031|ref|XP_002030225.1| GM24682 [Drosophila sechellia]
gi|194119168|gb|EDW41211.1| GM24682 [Drosophila sechellia]
Length = 1378
Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats.
Identities = 46/104 (44%), Positives = 68/104 (65%), Gaps = 11/104 (10%)
Query: 84 QGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIV 143
QG P ++ V T V G VK+++ K G+GFI R D +ED+FVH+S+I
Sbjct: 47 QGQPAPPTKEVIAT-----------KVTGTVKWFNVKSGYGFINRNDTREDVFVHQSAIA 95
Query: 144 KMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGA 187
+ NPKK +S+G GE+V+F++ +G+K EA NVTGP+G PV+G+
Sbjct: 96 RNNPKKAVRSVGDGEVVEFDVVIGEKGNEAANVTGPSGEPVRGS 139
Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 41/78 (52%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ K G+GFI R D +ED+FVH+S+I + NPKK +S+G GE+V+F++ +G+K
Sbjct: 62 VTGTVKWFNVKSGYGFINRNDTREDVFVHQSAIARNNPKKAVRSVGDGEVVEFDVVIGEK 121
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G PV+G+
Sbjct: 122 GNEAANVTGPSGEPVRGS 139
>gi|321477873|gb|EFX88831.1| hypothetical protein DAPPUDRAFT_311200 [Daphnia pulex]
Length = 322
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/79 (55%), Positives = 62/79 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G+VK+++ K G+GFI R D KEDIFVH+++I + NP+K +S+G GEIV+F++ VG+K
Sbjct: 24 VTGVVKWFNVKSGYGFINRNDTKEDIFVHQTAISRNNPRKAVRSVGDGEIVEFDVVVGEK 83
Query: 69 DIEAINVTGPNGIPVQGAP 87
EA NVTGP G PV+G+P
Sbjct: 84 GHEAANVTGPEGEPVKGSP 102
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/79 (55%), Positives = 62/79 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G+VK+++ K G+GFI R D KEDIFVH+++I + NP+K +S+G GEIV+F++ VG+K
Sbjct: 24 VTGVVKWFNVKSGYGFINRNDTKEDIFVHQTAISRNNPRKAVRSVGDGEIVEFDVVVGEK 83
Query: 170 DIEAINVTGPNGIPVQGAP 188
EA NVTGP G PV+G+P
Sbjct: 84 GHEAANVTGPEGEPVKGSP 102
>gi|288558834|sp|P45441.2|YBX2B_XENLA RecName: Full=Y-box-binding protein 2-B; AltName: Full=Cytoplasmic
RNA-binding protein p54; AltName: Full=Frog Y-box
protein 2-B; Short=FRGY2b; AltName: Full=Messenger
ribonucleoprotein particle 3; Short=mRNP3
gi|161611735|gb|AAI55914.1| Csda-A protein [Xenopus laevis]
Length = 324
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 62/78 (79%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V+G VK+++ + G+GFI R D+KED+FVH+++I K NP+KF +S+G GE V+F++ G+K
Sbjct: 42 VQGTVKWFNVRNGYGFINRNDSKEDVFVHQTAIKKNNPRKFLRSVGDGETVEFDVVEGEK 101
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PV+G+
Sbjct: 102 GAEAANVTGPGGVPVKGS 119
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 62/78 (79%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V+G VK+++ + G+GFI R D+KED+FVH+++I K NP+KF +S+G GE V+F++ G+K
Sbjct: 42 VQGTVKWFNVRNGYGFINRNDSKEDVFVHQTAIKKNNPRKFLRSVGDGETVEFDVVEGEK 101
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PV+G+
Sbjct: 102 GAEAANVTGPGGVPVKGS 119
>gi|157118310|ref|XP_001653164.1| Y-box binding protein [Aedes aegypti]
gi|108883287|gb|EAT47512.1| AAEL001375-PA [Aedes aegypti]
Length = 304
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 64/83 (77%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G+VK+++ K G+GFI R D +ED+FVH+S+I + NPKK +S+G GE+V+F++ +G+K
Sbjct: 15 VTGVVKWFNVKSGYGFINRGDTQEDVFVHQSAIARNNPKKAVRSVGDGEVVEFDVVIGEK 74
Query: 69 DIEAINVTGPNGIPVQGAPKSSS 91
EA NVTGP G PV+G+P ++
Sbjct: 75 GNEAANVTGPQGEPVKGSPYAAE 97
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/79 (53%), Positives = 62/79 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G+VK+++ K G+GFI R D +ED+FVH+S+I + NPKK +S+G GE+V+F++ +G+K
Sbjct: 15 VTGVVKWFNVKSGYGFINRGDTQEDVFVHQSAIARNNPKKAVRSVGDGEVVEFDVVIGEK 74
Query: 170 DIEAINVTGPNGIPVQGAP 188
EA NVTGP G PV+G+P
Sbjct: 75 GNEAANVTGPQGEPVKGSP 93
>gi|147901492|ref|NP_001081167.1| Y-box-binding protein 2-B [Xenopus laevis]
gi|214642|gb|AAA49924.1| p54 [Xenopus laevis]
Length = 324
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/85 (51%), Positives = 65/85 (76%), Gaps = 3/85 (3%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V+G VK+++ + G+GFI R D+KED+FVH+++I K NP+KF +S+G GE V+F++ G+K
Sbjct: 42 VQGTVKWFNVRNGYGFINRNDSKEDVFVHQTAIKKNNPRKFLRSVGDGETVEFDVVEGEK 101
Query: 69 DIEAINVTGPNGIPVQG---APKSS 90
EA NVTGP G+PV+G AP S+
Sbjct: 102 GAEAANVTGPGGVPVKGSRFAPNST 126
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 62/78 (79%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V+G VK+++ + G+GFI R D+KED+FVH+++I K NP+KF +S+G GE V+F++ G+K
Sbjct: 42 VQGTVKWFNVRNGYGFINRNDSKEDVFVHQTAIKKNNPRKFLRSVGDGETVEFDVVEGEK 101
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PV+G+
Sbjct: 102 GAEAANVTGPGGVPVKGS 119
>gi|194207608|ref|XP_001916443.1| PREDICTED: nuclease-sensitive element-binding protein 1-like [Equus
caballus]
Length = 364
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/86 (50%), Positives = 62/86 (72%)
Query: 1 MTKFEIHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVD 60
M K V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+
Sbjct: 91 MLKRGATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVE 150
Query: 61 FNIGVGKKDIEAINVTGPNGIPVQGA 86
F++ G+K EA NVTGP G+PVQG+
Sbjct: 151 FDVVEGEKGAEAANVTGPGGVPVQGS 176
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 99 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 158
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 159 GAEAANVTGPGGVPVQGS 176
>gi|147902111|ref|NP_001081274.1| Y-box-binding protein 2-A [Xenopus laevis]
gi|288558836|sp|P21574.3|YBX2A_XENLA RecName: Full=Y-box-binding protein 2-A; AltName: Full=Cytoplasmic
RNA-binding protein p56; AltName: Full=Frog Y-box
protein 2; Short=FRG Y2; AltName: Full=Frog Y-box
protein 2-A; Short=FRGY2a; AltName: Full=Messenger
ribonucleoprotein particle 4; Short=mRNP4
gi|214157|gb|AAA49716.1| DNA-binding protein [Xenopus laevis]
gi|213623410|gb|AAI69706.1| Sequence -specific binding protein [Xenopus laevis]
gi|213625048|gb|AAI69704.1| Sequence -specific binding protein [Xenopus laevis]
Length = 336
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V+G VK+++ + G+GFI R D KED+FVH+++I K NP+KF +S+G GE V+F++ G+K
Sbjct: 42 VQGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGETVEFDVVEGEK 101
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PV+G+
Sbjct: 102 GAEAANVTGPGGVPVKGS 119
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 61/78 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V+G VK+++ + G+GFI R D KED+FVH+++I K NP+KF +S+G GE V+F++ G+K
Sbjct: 42 VQGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGETVEFDVVEGEK 101
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PV+G+
Sbjct: 102 GAEAANVTGPGGVPVKGS 119
>gi|345312268|ref|XP_001515006.2| PREDICTED: nuclease-sensitive element-binding protein 1-like
[Ornithorhynchus anatinus]
Length = 308
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 61/83 (73%)
Query: 4 FEIHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
E V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++
Sbjct: 38 LETTKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDV 97
Query: 64 GVGKKDIEAINVTGPNGIPVQGA 86
G+K EA NVTGP G+PVQG+
Sbjct: 98 VEGEKGAEAANVTGPGGVPVQGS 120
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/85 (49%), Positives = 63/85 (74%), Gaps = 2/85 (2%)
Query: 105 PAVHTVR--GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDF 162
P + T + G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F
Sbjct: 36 PHLETTKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEF 95
Query: 163 NIGVGKKDIEAINVTGPNGIPVQGA 187
++ G+K EA NVTGP G+PVQG+
Sbjct: 96 DVVEGEKGAEAANVTGPGGVPVQGS 120
>gi|140245|sp|P21573.1|YBOX1_XENLA RecName: Full=Nuclease-sensitive element-binding protein 1;
AltName: Full=Y-box transcription factor; AltName:
Full=Y-box-binding protein 1; Short=YB-1
gi|214155|gb|AAA49715.1| DNA-binding protein [Xenopus laevis]
Length = 303
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 37 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 96
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 97 GAEAANVTGPEGVPVQGS 114
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 37 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 96
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 97 GAEAANVTGPEGVPVQGS 114
>gi|147903761|ref|NP_001079367.1| nuclease-sensitive element-binding protein 1 [Xenopus laevis]
gi|27370848|gb|AAH41191.1| Ybx1 protein [Xenopus laevis]
gi|76779926|gb|AAI06324.1| Ybx1 protein [Xenopus laevis]
Length = 303
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 37 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 96
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 97 GAEAANVTGPEGVPVQGS 114
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 37 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 96
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 97 GAEAANVTGPEGVPVQGS 114
>gi|449487186|ref|XP_004176589.1| PREDICTED: nuclease-sensitive element-binding protein 1 isoform 2
[Taeniopygia guttata]
Length = 302
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/82 (51%), Positives = 61/82 (74%)
Query: 106 AVHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIG 165
A V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++
Sbjct: 30 AATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVV 89
Query: 166 VGKKDIEAINVTGPNGIPVQGA 187
G+K EA NVTGP G+PVQG+
Sbjct: 90 EGEKGAEAANVTGPGGVPVQGS 111
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 34 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 93
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 94 GAEAANVTGPGGVPVQGS 111
>gi|161612267|gb|AAI55915.1| FRGY2 protein [Xenopus laevis]
Length = 342
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V+G VK+++ + G+GFI R D KED+FVH+++I K NP+KF +S+G GE V+F++ G+K
Sbjct: 42 VQGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGETVEFDVVEGEK 101
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PV+G+
Sbjct: 102 GAEAANVTGPGGVPVKGS 119
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 61/78 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V+G VK+++ + G+GFI R D KED+FVH+++I K NP+KF +S+G GE V+F++ G+K
Sbjct: 42 VQGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGETVEFDVVEGEK 101
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PV+G+
Sbjct: 102 GAEAANVTGPGGVPVKGS 119
>gi|14602477|gb|AAH09744.1| CSDA protein [Homo sapiens]
Length = 303
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +SLG GE V+F++ G+K
Sbjct: 91 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSLGDGETVEFDVVEGEK 150
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G+PV+G+
Sbjct: 151 GAEAANVTGPDGVPVEGS 168
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 61/78 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +SLG GE V+F++ G+K
Sbjct: 91 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSLGDGETVEFDVVEGEK 150
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G+PV+G+
Sbjct: 151 GAEAANVTGPDGVPVEGS 168
>gi|213512942|ref|NP_001133216.1| Y-box binding protein-2 [Salmo salar]
gi|197632619|gb|ACH71033.1| Y-box binding protein-2 [Salmo salar]
Length = 301
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GEIV+F++ G+K
Sbjct: 40 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGEIVEFDVVEGEK 99
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 100 GAEAANVTGPAGVPVQGS 117
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 61/78 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GEIV+F++ G+K
Sbjct: 40 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGEIVEFDVVEGEK 99
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 100 GAEAANVTGPAGVPVQGS 117
>gi|148225376|ref|NP_001087255.1| nuclease-sensitive element-binding protein 1 [Ovis aries]
gi|140326474|gb|ABO86713.1| nuclease sensitive element binding protein 1 [Ovis aries]
Length = 288
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+KF +S+G GE V+F++ G+K
Sbjct: 23 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGETVEFDVVEGEK 82
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 83 GAEAANVTGPGGVPVQGS 100
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+KF +S+G GE V+F++ G+K
Sbjct: 23 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGETVEFDVVEGEK 82
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 83 GAEAANVTGPGGVPVQGS 100
>gi|181486|gb|AAA35750.1| DNA-binding protein B, partial [Homo sapiens]
Length = 364
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 99 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 158
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 159 GAEAANVTGPGGVPVQGS 176
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 99 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 158
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 159 GAEAANVTGPGGVPVQGS 176
>gi|348542583|ref|XP_003458764.1| PREDICTED: hypothetical protein LOC100702319 [Oreochromis
niloticus]
Length = 339
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V+G VK+++ + G+GFI R D KED+FVH+++I K NP+KF +S+G GEIV+F++ K
Sbjct: 30 VQGTVKWFNVRNGYGFINRNDTKEDVFVHQTAITKNNPRKFLRSVGDGEIVEFDVIEAAK 89
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PV+G+
Sbjct: 90 GSEAANVTGPGGVPVKGS 107
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V+G VK+++ + G+GFI R D KED+FVH+++I K NP+KF +S+G GEIV+F++ K
Sbjct: 30 VQGTVKWFNVRNGYGFINRNDTKEDVFVHQTAITKNNPRKFLRSVGDGEIVEFDVIEAAK 89
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PV+G+
Sbjct: 90 GSEAANVTGPGGVPVKGS 107
>gi|126340161|ref|XP_001372013.1| PREDICTED: DNA-binding protein A-like [Monodelphis domestica]
Length = 320
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 62/78 (79%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GEIV+F++ G+K
Sbjct: 44 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGEIVEFDVVEGEK 103
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G+PV+G+
Sbjct: 104 GAEAANVTGPDGVPVEGS 121
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 62/78 (79%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GEIV+F++ G+K
Sbjct: 44 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGEIVEFDVVEGEK 103
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G+PV+G+
Sbjct: 104 GAEAANVTGPDGVPVEGS 121
>gi|62859889|ref|NP_001016677.1| Y box binding protein 1 [Xenopus (Silurana) tropicalis]
gi|89267862|emb|CAJ82694.1| Nuclease sensitive element binding protein 1 [Xenopus (Silurana)
tropicalis]
gi|89268717|emb|CAJ83277.1| Nuclease sensitive element binding protein 1 [Xenopus (Silurana)
tropicalis]
gi|213624244|gb|AAI70833.1| Y box binding protein 1 [Xenopus (Silurana) tropicalis]
gi|213625546|gb|AAI70835.1| Y box binding protein 1 [Xenopus (Silurana) tropicalis]
Length = 306
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 37 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 96
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 97 GAEAANVTGPGGVPVQGS 114
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 37 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 96
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 97 GAEAANVTGPGGVPVQGS 114
>gi|297278427|ref|XP_001088540.2| PREDICTED: hypothetical protein LOC700140 [Macaca mulatta]
Length = 511
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 203 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 262
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 263 GAEAANVTGPGGVPVQGS 280
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 203 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 262
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 263 GAEAANVTGPGGVPVQGS 280
>gi|291405168|ref|XP_002719041.1| PREDICTED: Y box binding protein 2 [Oryctolagus cuniculus]
Length = 275
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/87 (49%), Positives = 65/87 (74%), Gaps = 1/87 (1%)
Query: 101 DSFFPAVHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIV 160
D+ PA+ V G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +S+G GE V
Sbjct: 3 DTVKPAIQ-VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETV 61
Query: 161 DFNIGVGKKDIEAINVTGPNGIPVQGA 187
+F++ G+K EA NVTGP G+PV+G+
Sbjct: 62 EFDVVEGEKGAEAANVTGPGGVPVKGS 88
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +S+G GE V+F++ G+K
Sbjct: 11 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEK 70
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PV+G+
Sbjct: 71 GAEAANVTGPGGVPVKGS 88
>gi|395853103|ref|XP_003804011.1| PREDICTED: LOW QUALITY PROTEIN: nuclease-sensitive element-binding
protein 1 [Otolemur garnettii]
Length = 342
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 151 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 210
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP GIPVQG+
Sbjct: 211 GAEAANVTGPGGIPVQGS 228
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 151 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 210
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP GIPVQG+
Sbjct: 211 GAEAANVTGPGGIPVQGS 228
>gi|395533601|ref|XP_003768844.1| PREDICTED: Y-box-binding protein 2 [Sarcophilus harrisii]
Length = 345
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/105 (44%), Positives = 74/105 (70%), Gaps = 2/105 (1%)
Query: 85 GAPKSSSE-TVSGTYRNDSFFPAVHT-VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSI 142
GAP +++ T + R+ + P + T V G VK+++ + G+GFI R D KED+FVH+++I
Sbjct: 4 GAPTTAAPGTPAPHARSQADKPVLATQVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAI 63
Query: 143 VKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGA 187
+ NP+KF +S+G GE V+F++ G+K EA NVTGP G+PV+G+
Sbjct: 64 KRNNPRKFLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVKGS 108
Score = 92.4 bits (228), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +S+G GE V+F++ G+K
Sbjct: 31 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEK 90
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PV+G+
Sbjct: 91 GAEAANVTGPGGVPVKGS 108
>gi|27503841|gb|AAH42217.1| Nsep1 protein [Xenopus laevis]
Length = 304
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 37 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 96
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 97 GAEAANVTGPGGVPVQGS 114
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 37 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 96
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 97 GAEAANVTGPGGVPVQGS 114
>gi|189299|gb|AAA59949.1| DNA-binding protein [Homo sapiens]
Length = 320
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 56 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 115
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 116 GAEAANVTGPGGVPVQGS 133
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 56 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 115
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 116 GAEAANVTGPGGVPVQGS 133
>gi|387019953|gb|AFJ52094.1| Y box binding protein 1 [Crotalus adamanteus]
Length = 347
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 82 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 141
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 142 GAEAANVTGPGGVPVQGS 159
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 82 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 141
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 142 GAEAANVTGPGGVPVQGS 159
>gi|130488167|ref|NP_001076254.1| nuclease-sensitive element-binding protein 1 [Oryctolagus
cuniculus]
gi|75069491|sp|Q28618.3|YBOX1_RABIT RecName: Full=Nuclease-sensitive element-binding protein 1;
AltName: Full=CCAAT-binding transcription factor I
subunit A; Short=CBF-A; AltName: Full=Enhancer factor I
subunit A; Short=EFI-A; AltName: Full=Y-box
transcription factor; AltName: Full=Y-box-binding
protein 1; Short=YB-1; AltName: Full=p50
gi|608518|gb|AAA66069.1| p50 [Oryctolagus cuniculus]
Length = 324
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 59 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 118
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 119 GAEAANVTGPGGVPVQGS 136
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 59 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 118
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 119 GAEAANVTGPGGVPVQGS 136
>gi|344287276|ref|XP_003415379.1| PREDICTED: nuclease-sensitive element-binding protein 1-like
[Loxodonta africana]
Length = 419
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 155 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 214
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 215 GAEAANVTGPGGVPVQGS 232
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 155 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 214
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 215 GAEAANVTGPGGVPVQGS 232
>gi|26344984|dbj|BAC36141.1| unnamed protein product [Mus musculus]
Length = 361
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED FVH++ I K NP+K+ +S+G GE V+F++G G+K
Sbjct: 83 VLGTVKWFNVRNGYGFINRNDTKEDAFVHQTVIKKNNPRKYLRSVGDGETVEFDVGEGEK 142
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G+PV+G+
Sbjct: 143 GAEAANVTGPDGVPVEGS 160
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED FVH++ I K NP+K+ +S+G GE V+F++G G+K
Sbjct: 83 VLGTVKWFNVRNGYGFINRNDTKEDAFVHQTVIKKNNPRKYLRSVGDGETVEFDVGEGEK 142
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G+PV+G+
Sbjct: 143 GAEAANVTGPDGVPVEGS 160
>gi|988283|gb|AAA75476.1| mYB-1b [Mus musculus]
Length = 322
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 57 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 116
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 117 GAEAANVTGPGGVPVQGS 134
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 57 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 116
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 117 GAEAANVTGPGGVPVQGS 134
>gi|199821|gb|AAA63390.1| Y box transcription factor [Mus musculus]
Length = 322
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 57 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 116
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 117 GAEAANVTGPGGVPVQGS 134
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 57 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 116
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 117 GAEAANVTGPGGVPVQGS 134
>gi|988281|gb|AAA75475.1| mYB-1a [Mus musculus]
Length = 322
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 57 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 116
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 117 GAEAANVTGPGGVPVQGS 134
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 57 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 116
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 117 GAEAANVTGPGGVPVQGS 134
>gi|197632617|gb|ACH71032.1| Y-box binding protein-1 [Salmo salar]
gi|209732334|gb|ACI67036.1| Nuclease-sensitive element-binding protein 1 [Salmo salar]
gi|221222302|gb|ACM09812.1| Nuclease-sensitive element-binding protein 1 [Salmo salar]
gi|223646798|gb|ACN10157.1| Nuclease-sensitive element-binding protein 1 [Salmo salar]
gi|223649012|gb|ACN11264.1| Nuclease-sensitive element-binding protein 1 [Salmo salar]
gi|223672655|gb|ACN12509.1| Nuclease-sensitive element-binding protein 1 [Salmo salar]
gi|303663491|gb|ADM16105.1| Nuclease-sensitive element-binding protein 1 [Salmo salar]
Length = 300
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NPKK+ +S+G GE V+F++ G+K
Sbjct: 39 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPKKYLRSVGDGETVEFDVVEGEK 98
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 99 GAEAANVTGPAGVPVQGS 116
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NPKK+ +S+G GE V+F++ G+K
Sbjct: 39 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPKKYLRSVGDGETVEFDVVEGEK 98
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 99 GAEAANVTGPAGVPVQGS 116
>gi|203999|gb|AAA41108.1| enhancer factor-1-alpha [Rattus norvegicus]
Length = 322
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 57 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 116
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 117 GAEAANVTGPGGVPVQGS 134
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 57 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 116
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 117 GAEAANVTGPGGVPVQGS 134
>gi|395538741|ref|XP_003771333.1| PREDICTED: DNA-binding protein A [Sarcophilus harrisii]
Length = 322
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 62/78 (79%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GEIV+F++ G+K
Sbjct: 45 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGEIVEFDVVEGEK 104
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G+PV+G+
Sbjct: 105 GAEAANVTGPDGVPVEGS 122
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 62/78 (79%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GEIV+F++ G+K
Sbjct: 45 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGEIVEFDVVEGEK 104
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G+PV+G+
Sbjct: 105 GAEAANVTGPDGVPVEGS 122
>gi|27807361|ref|NP_777240.1| nuclease-sensitive element-binding protein 1 [Bos taurus]
gi|34098946|ref|NP_004550.2| nuclease-sensitive element-binding protein 1 [Homo sapiens]
gi|332248504|ref|XP_003273402.1| PREDICTED: nuclease-sensitive element-binding protein 1 [Nomascus
leucogenys]
gi|332808655|ref|XP_525693.3| PREDICTED: nuclease-sensitive element-binding protein 1 [Pan
troglodytes]
gi|345780758|ref|XP_848660.2| PREDICTED: nuclease-sensitive element-binding protein 1-like [Canis
lupus familiaris]
gi|397483463|ref|XP_003812922.1| PREDICTED: nuclease-sensitive element-binding protein 1 [Pan
paniscus]
gi|402854140|ref|XP_003891736.1| PREDICTED: nuclease-sensitive element-binding protein 1 [Papio
anubis]
gi|54040030|sp|P67808.3|YBOX1_BOVIN RecName: Full=Nuclease-sensitive element-binding protein 1;
AltName: Full=CCAAT-binding transcription factor I
subunit A; Short=CBF-A; AltName: Full=DNA-binding
protein B; Short=DBPB; AltName: Full=Enhancer factor I
subunit A; Short=EFI-A; AltName: Full=Y-box
transcription factor; AltName: Full=Y-box-binding
protein 1; Short=YB-1
gi|54040031|sp|P67809.3|YBOX1_HUMAN RecName: Full=Nuclease-sensitive element-binding protein 1;
AltName: Full=CCAAT-binding transcription factor I
subunit A; Short=CBF-A; AltName: Full=DNA-binding
protein B; Short=DBPB; AltName: Full=Enhancer factor I
subunit A; Short=EFI-A; AltName: Full=Y-box
transcription factor; AltName: Full=Y-box-binding
protein 1; Short=YB-1
gi|162983|gb|AAA30497.1| transcription factor EF1(A) [Bos taurus]
gi|454152|gb|AAA20871.1| similar to dbpB protein [Homo sapiens]
gi|12803207|gb|AAH02411.1| Y box binding protein 1 [Homo sapiens]
gi|14714588|gb|AAH10430.1| Y box binding protein 1 [Homo sapiens]
gi|15929560|gb|AAH15208.1| Y box binding protein 1 [Homo sapiens]
gi|23468206|gb|AAH38384.1| Y box binding protein 1 [Homo sapiens]
gi|41350935|gb|AAH65571.1| Y box binding protein 1 [Homo sapiens]
gi|47125298|gb|AAH70084.1| Y box binding protein 1 [Homo sapiens]
gi|47940506|gb|AAH71708.1| Y box binding protein 1 [Homo sapiens]
gi|58477789|gb|AAH90038.1| Y box binding protein 1 [Homo sapiens]
gi|61359169|gb|AAX41678.1| nuclease sensitive element binding protein 1 [synthetic construct]
gi|68534659|gb|AAH98435.1| Y box binding protein 1 [Homo sapiens]
gi|76779237|gb|AAI06046.1| Y box binding protein 1 [Homo sapiens]
gi|86821283|gb|AAI05364.1| Y box binding protein 1 [Bos taurus]
gi|119627554|gb|EAX07149.1| Y box binding protein 1, isoform CRA_b [Homo sapiens]
gi|123981412|gb|ABM82535.1| Y box binding protein 1 [synthetic construct]
gi|123996253|gb|ABM85728.1| Y box binding protein 1 [synthetic construct]
gi|168277900|dbj|BAG10928.1| nuclease sensitive element-binding protein 1 [synthetic construct]
gi|296488844|tpg|DAA30957.1| TPA: nuclease-sensitive element-binding protein 1 [Bos taurus]
Length = 324
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 59 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 118
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 119 GAEAANVTGPGGVPVQGS 136
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 59 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 118
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 119 GAEAANVTGPGGVPVQGS 136
>gi|92373398|ref|NP_113751.3| nuclease-sensitive element-binding protein 1 [Rattus norvegicus]
gi|113205059|ref|NP_035862.2| nuclease-sensitive element-binding protein 1 [Mus musculus]
gi|51704186|sp|P62961.3|YBOX1_RAT RecName: Full=Nuclease-sensitive element-binding protein 1;
AltName: Full=CCAAT-binding transcription factor I
subunit A; Short=CBF-A; AltName: Full=DNA-binding
protein B; Short=DBPB; AltName: Full=Enhancer factor I
subunit A; Short=EFI-A; AltName: Full=Y-box
transcription factor; AltName: Full=Y-box-binding
protein 1; Short=YB-1
gi|51704189|sp|P62960.3|YBOX1_MOUSE RecName: Full=Nuclease-sensitive element-binding protein 1;
AltName: Full=CCAAT-binding transcription factor I
subunit A; Short=CBF-A; AltName: Full=DNA-binding
protein B; Short=DBPB; AltName: Full=Enhancer factor I
subunit A; Short=EFI-A; AltName: Full=Y-box
transcription factor; AltName: Full=Y-box-binding
protein 1; Short=YB-1
gi|202435|gb|AAA40577.1| Y-box binding protein 1/DNA binding protein B [Mus musculus]
gi|220895|dbj|BAA02569.1| DNA binding protein B [Rattus sp.]
gi|15488612|gb|AAH13450.1| Y box protein 1 [Mus musculus]
gi|15488999|gb|AAH13620.1| Y box protein 1 [Mus musculus]
gi|20987294|gb|AAH29747.1| Y box protein 1 [Mus musculus]
gi|21594391|gb|AAH31472.1| Y box protein 1 [Mus musculus]
gi|38197295|gb|AAH61634.1| Y box protein 1 [Mus musculus]
gi|47938951|gb|AAH72486.1| Y box binding protein 1 [Rattus norvegicus]
gi|68533639|gb|AAH98672.1| Y box binding protein 1 [Rattus norvegicus]
gi|74178193|dbj|BAE29883.1| unnamed protein product [Mus musculus]
gi|76779878|gb|AAI06144.1| Y box protein 1 [Mus musculus]
gi|120577450|gb|AAI30161.1| LOC100037035 protein [Xenopus laevis]
gi|149035444|gb|EDL90125.1| rCG50488, isoform CRA_b [Rattus norvegicus]
Length = 322
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 57 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 116
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 117 GAEAANVTGPGGVPVQGS 134
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 57 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 116
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 117 GAEAANVTGPGGVPVQGS 134
>gi|457262|gb|AAA36569.1| nuclease sensitive element binding protein-1 [Homo sapiens]
Length = 322
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 58 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 117
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 118 GAEAANVTGPGGVPVQGS 135
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 58 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 117
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 118 GAEAANVTGPGGVPVQGS 135
>gi|426329192|ref|XP_004025626.1| PREDICTED: nuclease-sensitive element-binding protein 1 [Gorilla
gorilla gorilla]
Length = 355
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 59 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 118
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 119 GAEAANVTGPGGVPVQGS 136
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 59 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 118
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 119 GAEAANVTGPGGVPVQGS 136
>gi|290543326|ref|NP_001166512.1| Y box binding protein 1 [Cavia porcellus]
gi|194241598|gb|ACF35054.1| YB1 [Cavia porcellus]
Length = 324
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 59 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 118
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 119 GAEAANVTGPGGVPVQGS 136
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 59 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 118
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 119 GAEAANVTGPGGVPVQGS 136
>gi|203398|gb|AAA40906.1| putative [Rattus norvegicus]
Length = 322
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 57 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 116
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 117 GAEAANVTGPGGVPVQGS 134
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 57 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 116
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 117 GAEAANVTGPGGVPVQGS 134
>gi|194332739|ref|NP_001123667.1| Y box binding protein 2 [Xenopus (Silurana) tropicalis]
gi|187469386|gb|AAI66950.1| LOC100170415 protein [Xenopus (Silurana) tropicalis]
Length = 337
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V+G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +S+G GE V+F++ G+K
Sbjct: 42 VQGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEK 101
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PV+G+
Sbjct: 102 GAEAANVTGPGGVPVKGS 119
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V+G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +S+G GE V+F++ G+K
Sbjct: 42 VQGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEK 101
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PV+G+
Sbjct: 102 GAEAANVTGPGGVPVKGS 119
>gi|392344611|ref|XP_003749029.1| PREDICTED: nuclease-sensitive element-binding protein 1-like
[Rattus norvegicus]
Length = 322
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 57 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 116
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 117 GAEAANVTGPGGVPVQGS 134
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 57 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 116
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 117 GAEAANVTGPGGVPVQGS 134
>gi|332812662|ref|XP_001136258.2| PREDICTED: nuclease-sensitive element-binding protein 1-like [Pan
troglodytes]
Length = 325
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 60/81 (74%)
Query: 107 VHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGV 166
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++
Sbjct: 57 ARKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVE 116
Query: 167 GKKDIEAINVTGPNGIPVQGA 187
G+K EA NVTGP G+PVQG+
Sbjct: 117 GEKGAEAANVTGPGGVPVQGS 137
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 60 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 119
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 120 GAEAANVTGPGGVPVQGS 137
>gi|449487182|ref|XP_002194901.2| PREDICTED: nuclease-sensitive element-binding protein 1 isoform 1
[Taeniopygia guttata]
Length = 320
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 56 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 115
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 116 GAEAANVTGPGGVPVQGS 133
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 56 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 115
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 116 GAEAANVTGPGGVPVQGS 133
>gi|61367907|gb|AAX43065.1| nuclease sensitive element binding protein 1 [synthetic construct]
gi|61369330|gb|AAX43318.1| nuclease sensitive element binding protein 1 [synthetic construct]
Length = 325
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 59 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 118
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 119 GAEAANVTGPGGVPVQGS 136
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 59 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 118
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 119 GAEAANVTGPGGVPVQGS 136
>gi|9653686|gb|AAB46889.2| TSH receptor suppressor element-binding protein-1 [Rattus sp.]
Length = 322
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 57 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 116
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 117 GAEAANVTGPGGVPVQGS 134
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 57 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 116
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 117 GAEAANVTGPGGVPVQGS 134
>gi|29437175|gb|AAH49977.1| Y box protein 1 [Mus musculus]
Length = 322
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 57 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 116
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 117 GAEAANVTGPGGVPVQGS 134
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 57 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 116
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 117 GAEAANVTGPGGVPVQGS 134
>gi|55451|emb|CAA40847.1| Y box-binbing protein [Mus musculus]
Length = 321
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 56 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 115
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 116 GAEAANVTGPGGVPVQGS 133
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 56 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 115
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 116 GAEAANVTGPGGVPVQGS 133
>gi|354502621|ref|XP_003513382.1| PREDICTED: nuclease-sensitive element-binding protein 1-like
[Cricetulus griseus]
Length = 337
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 72 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 131
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 132 GAEAANVTGPGGVPVQGS 149
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 72 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 131
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 132 GAEAANVTGPGGVPVQGS 149
>gi|344267606|ref|XP_003405657.1| PREDICTED: DNA-binding protein A-like isoform 2 [Loxodonta
africana]
Length = 299
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 88 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 147
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G+PV+G+
Sbjct: 148 GAEAANVTGPDGVPVEGS 165
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 88 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 147
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G+PV+G+
Sbjct: 148 GAEAANVTGPDGVPVEGS 165
>gi|465508|sp|Q06066.1|YBOX1_CHICK RecName: Full=Nuclease-sensitive element-binding protein 1;
AltName: Full=Y-box transcription factor; AltName:
Full=Y-box-binding protein 1; Short=YB-1
gi|289797|gb|AAA02573.1| YB-1 protein [Gallus gallus]
Length = 321
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 56 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 115
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 116 GAEAANVTGPGGVPVQGS 133
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 56 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 115
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 116 GAEAANVTGPGGVPVQGS 133
>gi|385724704|gb|AFI74356.1| cold shock Y-box protein [Cherax quadricarinatus]
Length = 324
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 63/82 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ K G+GFI R D KED+FVH+S+I+K NP+K+ +S+G GE V+F++ VG+K
Sbjct: 28 VTGTVKWFNVKSGYGFINRHDTKEDVFVHQSAIIKNNPRKYVRSVGDGEEVEFDVVVGEK 87
Query: 69 DIEAINVTGPNGIPVQGAPKSS 90
EA NVTGP G V+G+P ++
Sbjct: 88 GNEAANVTGPGGEAVKGSPYAA 109
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/79 (54%), Positives = 61/79 (77%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ K G+GFI R D KED+FVH+S+I+K NP+K+ +S+G GE V+F++ VG+K
Sbjct: 28 VTGTVKWFNVKSGYGFINRHDTKEDVFVHQSAIIKNNPRKYVRSVGDGEEVEFDVVVGEK 87
Query: 170 DIEAINVTGPNGIPVQGAP 188
EA NVTGP G V+G+P
Sbjct: 88 GNEAANVTGPGGEAVKGSP 106
>gi|345798009|ref|XP_003434389.1| PREDICTED: LOW QUALITY PROTEIN: nuclease-sensitive element-binding
protein 1 [Canis lupus familiaris]
Length = 444
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GF+ R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 179 VLGTVKWFNVRNGYGFLNRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 238
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 239 GAEAANVTGPGGVPVQGS 256
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GF+ R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 179 VLGTVKWFNVRNGYGFLNRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 238
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 239 GAEAANVTGPGGVPVQGS 256
>gi|1353778|gb|AAB01787.1| Y-Box binding protein [Columba livia]
Length = 287
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 22 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 81
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 82 GAEAANVTGPGGVPVQGS 99
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 22 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 81
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 82 GAEAANVTGPGGVPVQGS 99
>gi|403292124|ref|XP_003937105.1| PREDICTED: nuclease-sensitive element-binding protein 1 [Saimiri
boliviensis boliviensis]
Length = 422
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 157 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 216
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 217 GAEAANVTGPGGVPVQGS 234
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 157 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 216
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 217 GAEAANVTGPGGVPVQGS 234
>gi|334333673|ref|XP_001376438.2| PREDICTED: nuclease-sensitive element-binding protein 1-like
[Monodelphis domestica]
Length = 322
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 49 VWGTVKWFNVRNGYGFINRDDTKEDVFVHQTAIKKNNPRKYLRSVGDGEPVEFDVVEGEK 108
Query: 69 DIEAINVTGPNGIPVQGA 86
+EA NVTGP G PVQG+
Sbjct: 109 GVEAANVTGPGGAPVQGS 126
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 49 VWGTVKWFNVRNGYGFINRDDTKEDVFVHQTAIKKNNPRKYLRSVGDGEPVEFDVVEGEK 108
Query: 170 DIEAINVTGPNGIPVQGA 187
+EA NVTGP G PVQG+
Sbjct: 109 GVEAANVTGPGGAPVQGS 126
>gi|45383329|ref|NP_989745.1| nuclease-sensitive element-binding protein 1 [Gallus gallus]
gi|516701|dbj|BAA05380.1| unnamed protein product [Gallus gallus]
Length = 326
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 57 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 116
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 117 GAEAANVTGPGGVPVQGS 134
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 57 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 116
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 117 GAEAANVTGPGGVPVQGS 134
>gi|395862756|ref|XP_003804032.1| PREDICTED: LOW QUALITY PROTEIN: DNA-binding protein A [Otolemur
garnettii]
Length = 558
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 272 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 331
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G+PV+G+
Sbjct: 332 GAEAANVTGPDGVPVEGS 349
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 272 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 331
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G+PV+G+
Sbjct: 332 GAEAANVTGPDGVPVEGS 349
>gi|2745892|gb|AAB94768.1| Y box transcription factor [Mus musculus]
Length = 299
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 34 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 93
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 94 GAEAANVTGPGGVPVQGS 111
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 34 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 93
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 94 GAEAANVTGPGGVPVQGS 111
>gi|73909033|gb|AAI03638.1| Ybx1 protein [Rattus norvegicus]
Length = 326
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 57 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 116
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 117 GAEAANVTGPGGVPVQGS 134
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 57 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 116
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 117 GAEAANVTGPGGVPVQGS 134
>gi|397507531|ref|XP_003824248.1| PREDICTED: nuclease-sensitive element-binding protein 1-like [Pan
paniscus]
Length = 352
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK++D + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 88 VLGTVKWFDVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 147
Query: 69 DIEAINVTGPNGIPVQGA 86
+A NVTGP G+PVQG+
Sbjct: 148 GAKAANVTGPGGVPVQGS 165
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK++D + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 88 VLGTVKWFDVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 147
Query: 170 DIEAINVTGPNGIPVQGA 187
+A NVTGP G+PVQG+
Sbjct: 148 GAKAANVTGPGGVPVQGS 165
>gi|149035443|gb|EDL90124.1| rCG50488, isoform CRA_a [Rattus norvegicus]
Length = 305
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 40 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 99
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 100 GAEAANVTGPGGVPVQGS 117
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 40 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 99
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 100 GAEAANVTGPGGVPVQGS 117
>gi|387017366|gb|AFJ50801.1| Nuclease-sensitive element-binding protein 1 [Crotalus adamanteus]
Length = 353
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 82 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 141
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 142 GAEAANVTGPGGVPVQGS 159
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 82 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 141
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 142 GAEAANVTGPGGVPVQGS 159
>gi|427782109|gb|JAA56506.1| Putative rna-binding protein [Rhipicephalus pulchellus]
Length = 373
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/82 (53%), Positives = 60/82 (73%)
Query: 107 VHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGV 166
V G VK+++ K G+GFI R D KEDIFVH+++I K NP K +S+G GE V+F++ V
Sbjct: 21 AERVLGTVKWFNVKNGYGFINRNDTKEDIFVHQTAITKNNPLKVVRSVGEGETVEFDVVV 80
Query: 167 GKKDIEAINVTGPNGIPVQGAP 188
G+K EA NVTGP G+PV+G+P
Sbjct: 81 GEKGNEAANVTGPEGVPVKGSP 102
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/82 (53%), Positives = 60/82 (73%)
Query: 6 IHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGV 65
V G VK+++ K G+GFI R D KEDIFVH+++I K NP K +S+G GE V+F++ V
Sbjct: 21 AERVLGTVKWFNVKNGYGFINRNDTKEDIFVHQTAITKNNPLKVVRSVGEGETVEFDVVV 80
Query: 66 GKKDIEAINVTGPNGIPVQGAP 87
G+K EA NVTGP G+PV+G+P
Sbjct: 81 GEKGNEAANVTGPEGVPVKGSP 102
>gi|116283293|gb|AAH18393.1| YBX1 protein [Homo sapiens]
Length = 267
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 59 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 118
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 119 GAEAANVTGPGGVPVQGS 136
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 59 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 118
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 119 GAEAANVTGPGGVPVQGS 136
>gi|449679510|ref|XP_004209349.1| PREDICTED: uncharacterized protein LOC100211522 [Hydra
magnipapillata]
Length = 308
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/93 (49%), Positives = 64/93 (68%), Gaps = 3/93 (3%)
Query: 102 SFFPA---VHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGE 158
S PA + V G VK+++ + G+GFI R D + D+FVH+++IVK NP K+ +S+G GE
Sbjct: 25 SKLPAKIIANKVSGTVKWFNVRNGYGFIHRNDTQNDVFVHQTAIVKNNPNKYLRSVGDGE 84
Query: 159 IVDFNIGVGKKDIEAINVTGPNGIPVQGAPKVP 191
V+F++ G K EAINVTGPNG PVQG+ P
Sbjct: 85 TVEFDVVEGVKGHEAINVTGPNGEPVQGSKYAP 117
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 60/81 (74%)
Query: 6 IHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGV 65
+ V G VK+++ + G+GFI R D + D+FVH+++IVK NP K+ +S+G GE V+F++
Sbjct: 33 ANKVSGTVKWFNVRNGYGFIHRNDTQNDVFVHQTAIVKNNPNKYLRSVGDGETVEFDVVE 92
Query: 66 GKKDIEAINVTGPNGIPVQGA 86
G K EAINVTGPNG PVQG+
Sbjct: 93 GVKGHEAINVTGPNGEPVQGS 113
>gi|355762957|gb|EHH62093.1| hypothetical protein EGM_20285 [Macaca fascicularis]
Length = 270
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 5 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGGGETVEFDVVEGEK 64
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 65 GAEAANVTGPGGVPVQGS 82
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 5 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGGGETVEFDVVEGEK 64
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 65 GAEAANVTGPGGVPVQGS 82
>gi|148698506|gb|EDL30453.1| mCG4206 [Mus musculus]
Length = 268
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 3 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 62
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 63 GAEAANVTGPGGVPVQGS 80
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 3 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 62
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 63 GAEAANVTGPGGVPVQGS 80
>gi|29477111|gb|AAH50156.1| Y box binding protein 1 [Danio rerio]
Length = 309
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 39 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 98
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 99 GAEAANVTGPGGVPVQGS 116
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 39 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 98
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 99 GAEAANVTGPGGVPVQGS 116
>gi|18859137|ref|NP_571695.1| nuclease-sensitive element-binding protein 1 isoform 2 [Danio
rerio]
gi|3695368|gb|AAC62774.1| zfY1 [Danio rerio]
gi|169642049|gb|AAI60650.1| Y box binding protein 1 [Danio rerio]
Length = 310
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 39 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 98
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 99 GAEAANVTGPGGVPVQGS 116
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 39 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 98
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 99 GAEAANVTGPGGVPVQGS 116
>gi|187607756|ref|NP_001119929.1| nuclease-sensitive element-binding protein 1 isoform 1 [Danio
rerio]
gi|118763928|gb|AAI28886.1| Y box binding protein 1 [Danio rerio]
Length = 309
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 39 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 98
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 99 GAEAANVTGPGGVPVQGS 116
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 39 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 98
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 99 GAEAANVTGPGGVPVQGS 116
>gi|197245601|gb|AAI68507.1| Ybx1 protein [Danio rerio]
Length = 310
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 39 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 98
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 99 GAEAANVTGPGGVPVQGS 116
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 39 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 98
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 99 GAEAANVTGPGGVPVQGS 116
>gi|33875177|gb|AAH00064.1| YBX1 protein, partial [Homo sapiens]
gi|47939143|gb|AAH72014.1| YBX1 protein, partial [Homo sapiens]
Length = 266
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 59 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 118
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 119 GAEAANVTGPGGVPVQGS 136
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 59 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 118
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 119 GAEAANVTGPGGVPVQGS 136
>gi|380799971|gb|AFE71861.1| nuclease-sensitive element-binding protein 1, partial [Macaca
mulatta]
Length = 288
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 23 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 82
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 83 GAEAANVTGPGGVPVQGS 100
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 23 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 82
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 83 GAEAANVTGPGGVPVQGS 100
>gi|148235020|ref|NP_001091543.1| DNA-binding protein A [Bos taurus]
gi|146186540|gb|AAI40645.1| CSDA protein [Bos taurus]
gi|296487252|tpg|DAA29365.1| TPA: cold shock domain protein A [Bos taurus]
Length = 376
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 97 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 156
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G+PV+G+
Sbjct: 157 GAEAANVTGPDGVPVEGS 174
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 97 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 156
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G+PV+G+
Sbjct: 157 GAEAANVTGPDGVPVEGS 174
>gi|351696375|gb|EHA99293.1| Nuclease-sensitive element-binding protein 1, partial
[Heterocephalus glaber]
Length = 269
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 4 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 63
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 64 GAEAANVTGPGGVPVQGS 81
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 4 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 63
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 64 GAEAANVTGPGGVPVQGS 81
>gi|148688939|gb|EDL20886.1| cold shock domain protein A, isoform CRA_b [Mus musculus]
Length = 292
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 83 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 142
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G+PV+G+
Sbjct: 143 GAEAANVTGPDGVPVEGS 160
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 83 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 142
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G+PV+G+
Sbjct: 143 GAEAANVTGPDGVPVEGS 160
>gi|392883116|gb|AFM90390.1| nuclease-sensitive element-binding protein 1-like protein
[Callorhinchus milii]
Length = 334
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 52 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 111
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 112 GAEAANVTGPGGVPVQGS 129
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 52 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 111
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 112 GAEAANVTGPGGVPVQGS 129
>gi|387914394|gb|AFK10806.1| nuclease-sensitive element-binding protein 1-like protein
[Callorhinchus milii]
Length = 334
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 52 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 111
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 112 GAEAANVTGPGGVPVQGS 129
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 52 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 111
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 112 GAEAANVTGPGGVPVQGS 129
>gi|20806532|ref|NP_035863.1| DNA-binding protein A short isoform [Mus musculus]
gi|10185725|gb|AAG14419.1|AF248547_1 Y-box protein 3 short isoform [Mus musculus]
gi|38382730|gb|AAH62377.1| Cold shock domain protein A [Mus musculus]
Length = 292
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 83 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 142
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G+PV+G+
Sbjct: 143 GAEAANVTGPDGVPVEGS 160
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 83 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 142
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G+PV+G+
Sbjct: 143 GAEAANVTGPDGVPVEGS 160
>gi|344267604|ref|XP_003405656.1| PREDICTED: DNA-binding protein A-like isoform 1 [Loxodonta
africana]
Length = 368
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 88 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 147
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G+PV+G+
Sbjct: 148 GAEAANVTGPDGVPVEGS 165
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 88 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 147
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G+PV+G+
Sbjct: 148 GAEAANVTGPDGVPVEGS 165
>gi|395516174|ref|XP_003762268.1| PREDICTED: uncharacterized protein LOC100914110 [Sarcophilus
harrisii]
Length = 255
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 49 VWGTVKWFNVRNGYGFINRDDTKEDVFVHQTAIKKNNPRKYLRSVGDGEPVEFDVVEGEK 108
Query: 69 DIEAINVTGPNGIPVQGA 86
+EA NVTGP G PVQG+
Sbjct: 109 GVEAANVTGPGGAPVQGS 126
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 49 VWGTVKWFNVRNGYGFINRDDTKEDVFVHQTAIKKNNPRKYLRSVGDGEPVEFDVVEGEK 108
Query: 170 DIEAINVTGPNGIPVQGA 187
+EA NVTGP G PVQG+
Sbjct: 109 GVEAANVTGPGGAPVQGS 126
>gi|441676845|ref|XP_003282197.2| PREDICTED: Y-box-binding protein 2 [Nomascus leucogenys]
Length = 318
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 76/121 (62%), Gaps = 9/121 (7%)
Query: 76 TGPNGIPVQGA----PKSSSETVSGT----YRNDSFFPAVH-TVRGIVKFYDSKRGFGFI 126
GP+G P P + + SGT R+ + P + V G VK+++ + G+GFI
Sbjct: 12 AGPSGSPCHAPGPRTPGNPATAASGTPAPPARSQADKPVLAIQVLGTVKWFNVRNGYGFI 71
Query: 127 TRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQG 186
R D KED+FVH+++I + NP+KF +S+G GE V+F++ G+K EA NVTGP G+PV+G
Sbjct: 72 NRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVKG 131
Query: 187 A 187
+
Sbjct: 132 S 132
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +S+G GE V+F++ G+K
Sbjct: 55 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEK 114
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PV+G+
Sbjct: 115 GAEAANVTGPGGVPVKGS 132
>gi|332025391|gb|EGI65558.1| Y-box factor-like protein [Acromyrmex echinatior]
Length = 362
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 62/82 (75%)
Query: 107 VHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGV 166
+ V G VK+++ K G+GFI R D KED+FVH+S+IVK NP+K +S+G GE+V+F++ +
Sbjct: 21 ANKVTGTVKWFNVKSGYGFINRNDTKEDVFVHQSAIVKNNPRKAVRSVGDGEVVEFDVVI 80
Query: 167 GKKDIEAINVTGPNGIPVQGAP 188
G+K EA NVTGP G V+G+P
Sbjct: 81 GEKGHEAANVTGPAGEAVKGSP 102
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 43/79 (54%), Positives = 61/79 (77%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ K G+GFI R D KED+FVH+S+IVK NP+K +S+G GE+V+F++ +G+K
Sbjct: 24 VTGTVKWFNVKSGYGFINRNDTKEDVFVHQSAIVKNNPRKAVRSVGDGEVVEFDVVIGEK 83
Query: 69 DIEAINVTGPNGIPVQGAP 87
EA NVTGP G V+G+P
Sbjct: 84 GHEAANVTGPAGEAVKGSP 102
>gi|2073109|dbj|BAA19849.1| Y box protein 1 [Carassius auratus]
Length = 311
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 40 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 99
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 100 GAEAANVTGPGGVPVQGS 117
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 40 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 99
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 100 GAEAANVTGPGGVPVQGS 117
>gi|380014528|ref|XP_003691281.1| PREDICTED: nuclease-sensitive element-binding protein 1-like [Apis
florea]
Length = 277
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 63/82 (76%)
Query: 107 VHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGV 166
+ V G VK+++ K G+GFI R D KED+FVH+S+IVK NP+K +S+G GE+V+F++ +
Sbjct: 21 ANKVTGTVKWFNVKSGYGFINRNDTKEDVFVHQSAIVKNNPRKAVRSVGDGEVVEFDVVI 80
Query: 167 GKKDIEAINVTGPNGIPVQGAP 188
G+K EA NVTGP+G V+G+P
Sbjct: 81 GEKGHEAANVTGPSGEAVKGSP 102
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 63/82 (76%)
Query: 6 IHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGV 65
+ V G VK+++ K G+GFI R D KED+FVH+S+IVK NP+K +S+G GE+V+F++ +
Sbjct: 21 ANKVTGTVKWFNVKSGYGFINRNDTKEDVFVHQSAIVKNNPRKAVRSVGDGEVVEFDVVI 80
Query: 66 GKKDIEAINVTGPNGIPVQGAP 87
G+K EA NVTGP+G V+G+P
Sbjct: 81 GEKGHEAANVTGPSGEAVKGSP 102
>gi|1160331|dbj|BAA03376.1| dbpA murine homologue [Mus musculus]
Length = 308
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 83 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 142
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G+PV+G+
Sbjct: 143 GAEAANVTGPDGVPVEGS 160
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 83 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 142
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G+PV+G+
Sbjct: 143 GAEAANVTGPDGVPVEGS 160
>gi|340723184|ref|XP_003399975.1| PREDICTED: hypothetical protein LOC100647589 [Bombus terrestris]
Length = 279
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 63/82 (76%)
Query: 107 VHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGV 166
+ V G VK+++ K G+GFI R D KED+FVH+S+IVK NP+K +S+G GE+V+F++ +
Sbjct: 21 ANKVTGTVKWFNVKSGYGFINRNDTKEDVFVHQSAIVKNNPRKAVRSVGDGEVVEFDVVI 80
Query: 167 GKKDIEAINVTGPNGIPVQGAP 188
G+K EA NVTGP+G V+G+P
Sbjct: 81 GEKGHEAANVTGPSGEAVKGSP 102
Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 63/82 (76%)
Query: 6 IHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGV 65
+ V G VK+++ K G+GFI R D KED+FVH+S+IVK NP+K +S+G GE+V+F++ +
Sbjct: 21 ANKVTGTVKWFNVKSGYGFINRNDTKEDVFVHQSAIVKNNPRKAVRSVGDGEVVEFDVVI 80
Query: 66 GKKDIEAINVTGPNGIPVQGAP 87
G+K EA NVTGP+G V+G+P
Sbjct: 81 GEKGHEAANVTGPSGEAVKGSP 102
>gi|110763831|ref|XP_393344.3| PREDICTED: hypothetical protein LOC409854 [Apis mellifera]
Length = 279
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 63/82 (76%)
Query: 107 VHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGV 166
+ V G VK+++ K G+GFI R D KED+FVH+S+IVK NP+K +S+G GE+V+F++ +
Sbjct: 21 ANKVTGTVKWFNVKSGYGFINRNDTKEDVFVHQSAIVKNNPRKAVRSVGDGEVVEFDVVI 80
Query: 167 GKKDIEAINVTGPNGIPVQGAP 188
G+K EA NVTGP+G V+G+P
Sbjct: 81 GEKGHEAANVTGPSGEAVKGSP 102
Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 63/82 (76%)
Query: 6 IHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGV 65
+ V G VK+++ K G+GFI R D KED+FVH+S+IVK NP+K +S+G GE+V+F++ +
Sbjct: 21 ANKVTGTVKWFNVKSGYGFINRNDTKEDVFVHQSAIVKNNPRKAVRSVGDGEVVEFDVVI 80
Query: 66 GKKDIEAINVTGPNGIPVQGAP 87
G+K EA NVTGP+G V+G+P
Sbjct: 81 GEKGHEAANVTGPSGEAVKGSP 102
>gi|148688938|gb|EDL20885.1| cold shock domain protein A, isoform CRA_a [Mus musculus]
Length = 405
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 127 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 186
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G+PV+G+
Sbjct: 187 GAEAANVTGPDGVPVEGS 204
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 127 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 186
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G+PV+G+
Sbjct: 187 GAEAANVTGPDGVPVEGS 204
>gi|392876672|gb|AFM87168.1| nuclease-sensitive element-binding protein 1-like protein
[Callorhinchus milii]
Length = 334
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 52 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 111
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 112 GAEAANVTGPGGVPVQGS 129
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 52 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 111
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 112 GAEAANVTGPGGVPVQGS 129
>gi|395743965|ref|XP_003778021.1| PREDICTED: DNA-binding protein A isoform 2 [Pongo abelii]
Length = 302
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 90 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 149
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G+PV+G+
Sbjct: 150 GAEAANVTGPDGVPVEGS 167
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 90 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 149
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G+PV+G+
Sbjct: 150 GAEAANVTGPDGVPVEGS 167
>gi|426371672|ref|XP_004052766.1| PREDICTED: DNA-binding protein A isoform 2 [Gorilla gorilla
gorilla]
gi|410332671|gb|JAA35282.1| cold shock domain protein A [Pan troglodytes]
Length = 304
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 92 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 151
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G+PV+G+
Sbjct: 152 GAEAANVTGPDGVPVEGS 169
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 92 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 151
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G+PV+G+
Sbjct: 152 GAEAANVTGPDGVPVEGS 169
>gi|392883992|gb|AFM90828.1| nuclease-sensitive element-binding protein 1-like protein
[Callorhinchus milii]
Length = 334
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 52 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 111
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 112 GAEAANVTGPGGVPVQGS 129
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 52 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 111
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 112 GAEAANVTGPGGVPVQGS 129
>gi|384949962|gb|AFI38586.1| DNA-binding protein A isoform b [Macaca mulatta]
Length = 303
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 91 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 150
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G+PV+G+
Sbjct: 151 GAEAANVTGPDGVPVEGS 168
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 91 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 150
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G+PV+G+
Sbjct: 151 GAEAANVTGPDGVPVEGS 168
>gi|332838569|ref|XP_003313542.1| PREDICTED: DNA-binding protein A isoform 1 [Pan troglodytes]
gi|410224322|gb|JAA09380.1| cold shock domain protein A [Pan troglodytes]
Length = 305
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 93 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 152
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G+PV+G+
Sbjct: 153 GAEAANVTGPDGVPVEGS 170
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 93 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 152
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G+PV+G+
Sbjct: 153 GAEAANVTGPDGVPVEGS 170
>gi|224586884|ref|NP_001138898.1| DNA-binding protein A isoform b [Homo sapiens]
gi|16198465|gb|AAH15913.1| CSDA protein [Homo sapiens]
gi|119616609|gb|EAW96203.1| cold shock domain protein A, isoform CRA_b [Homo sapiens]
gi|119616610|gb|EAW96204.1| cold shock domain protein A, isoform CRA_b [Homo sapiens]
Length = 303
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 91 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 150
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G+PV+G+
Sbjct: 151 GAEAANVTGPDGVPVEGS 168
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 91 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 150
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G+PV+G+
Sbjct: 151 GAEAANVTGPDGVPVEGS 168
>gi|340419|gb|AAA61308.1| Y box binding protein-1 [Homo sapiens]
Length = 317
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 59 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 118
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 119 GEEAANVTGPGGVPVQGS 136
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 59 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 118
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 119 GEEAANVTGPGGVPVQGS 136
>gi|350418677|ref|XP_003491933.1| PREDICTED: hypothetical protein LOC100746188 [Bombus impatiens]
Length = 262
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 63/82 (76%)
Query: 107 VHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGV 166
+ V G VK+++ K G+GFI R D KED+FVH+S+IVK NP+K +S+G GE+V+F++ +
Sbjct: 21 ANKVTGTVKWFNVKSGYGFINRNDTKEDVFVHQSAIVKNNPRKAVRSVGDGEVVEFDVVI 80
Query: 167 GKKDIEAINVTGPNGIPVQGAP 188
G+K EA NVTGP+G V+G+P
Sbjct: 81 GEKGHEAANVTGPSGEAVKGSP 102
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 63/82 (76%)
Query: 6 IHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGV 65
+ V G VK+++ K G+GFI R D KED+FVH+S+IVK NP+K +S+G GE+V+F++ +
Sbjct: 21 ANKVTGTVKWFNVKSGYGFINRNDTKEDVFVHQSAIVKNNPRKAVRSVGDGEVVEFDVVI 80
Query: 66 GKKDIEAINVTGPNGIPVQGAP 87
G+K EA NVTGP+G V+G+P
Sbjct: 81 GEKGHEAANVTGPSGEAVKGSP 102
>gi|296227166|ref|XP_002759249.1| PREDICTED: Y-box-binding protein 2-like, partial [Callithrix
jacchus]
Length = 253
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 45/100 (45%), Positives = 71/100 (71%), Gaps = 1/100 (1%)
Query: 89 SSSETVSGTYRNDSFFPAVH-TVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNP 147
++S T + RN + P + V G VK+++ + G+GFI+R D KED+FVH+++I + NP
Sbjct: 73 AASGTPTPPARNQADKPVLAIRVLGTVKWFNVRNGYGFISRNDTKEDVFVHQTAIKRNNP 132
Query: 148 KKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGA 187
+KF +S+G GE V+F++ G+K EA NVTGP G+PV+G+
Sbjct: 133 RKFLRSVGDGETVEFDVVGGEKGPEAANVTGPGGVPVKGS 172
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI+R D KED+FVH+++I + NP+KF +S+G GE V+F++ G+K
Sbjct: 95 VLGTVKWFNVRNGYGFISRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVGGEK 154
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PV+G+
Sbjct: 155 GPEAANVTGPGGVPVKGS 172
>gi|345320052|ref|XP_001517390.2| PREDICTED: DNA-binding protein A-like, partial [Ornithorhynchus
anatinus]
Length = 141
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 64/85 (75%)
Query: 2 TKFEIHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDF 61
+K + V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F
Sbjct: 34 SKIQTTKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEF 93
Query: 62 NIGVGKKDIEAINVTGPNGIPVQGA 86
++ G+K EA NVTGP+G+PV+G+
Sbjct: 94 DVVEGEKGAEAANVTGPDGVPVEGS 118
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 41 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 100
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G+PV+G+
Sbjct: 101 GAEAANVTGPDGVPVEGS 118
>gi|47059495|ref|NP_620817.2| DNA-binding protein A long isoform [Mus musculus]
gi|61212920|sp|Q9JKB3.2|DBPA_MOUSE RecName: Full=DNA-binding protein A; AltName: Full=Cold shock
domain-containing protein A; AltName: Full=Y-box protein
3
gi|29387050|gb|AAH48242.1| Cold shock domain protein A [Mus musculus]
gi|76779326|gb|AAI05779.1| Cold shock domain protein A [Rattus norvegicus]
Length = 361
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 83 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 142
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G+PV+G+
Sbjct: 143 GAEAANVTGPDGVPVEGS 160
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 83 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 142
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G+PV+G+
Sbjct: 143 GAEAANVTGPDGVPVEGS 160
>gi|410963934|ref|XP_003988513.1| PREDICTED: DNA-binding protein A [Felis catus]
Length = 315
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 36 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 95
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G+PV+G+
Sbjct: 96 GAEAANVTGPDGVPVEGS 113
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 36 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 95
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G+PV+G+
Sbjct: 96 GAEAANVTGPDGVPVEGS 113
>gi|386781556|ref|NP_114185.3| DNA-binding protein A [Rattus norvegicus]
gi|6166111|sp|Q62764.1|DBPA_RAT RecName: Full=DNA-binding protein A; AltName: Full=Cold shock
domain-containing protein A; AltName: Full=Muscle Y-box
protein YB2; AltName: Full=RYB-A; AltName:
Full=Y-box-binding protein A
gi|1101884|gb|AAB60520.1| YB2 [Rattus norvegicus]
gi|1589174|prf||2210343A nicotinic acetylcholine receptor repressor
Length = 361
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 83 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 142
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G+PV+G+
Sbjct: 143 GAEAANVTGPDGVPVEGS 160
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 83 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 142
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G+PV+G+
Sbjct: 143 GAEAANVTGPDGVPVEGS 160
>gi|335288453|ref|XP_003355623.1| PREDICTED: DNA-binding protein A-like isoform 2 [Sus scrofa]
Length = 312
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 100 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 159
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G+PV+G+
Sbjct: 160 GAEAANVTGPDGVPVEGS 177
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 100 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 159
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G+PV+G+
Sbjct: 160 GAEAANVTGPDGVPVEGS 177
>gi|10185723|gb|AAG14418.1|AF248546_1 Y-box protein 3 long isoform [Mus musculus]
Length = 361
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 83 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 142
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G+PV+G+
Sbjct: 143 GAEAANVTGPDGVPVEGS 160
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 83 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 142
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G+PV+G+
Sbjct: 143 GAEAANVTGPDGVPVEGS 160
>gi|7385223|gb|AAF61741.1| RNA binding protein MSY4 [Mus musculus]
Length = 361
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 83 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 142
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G+PV+G+
Sbjct: 143 GAEAANVTGPDGVPVEGS 160
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 83 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 142
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G+PV+G+
Sbjct: 143 GAEAANVTGPDGVPVEGS 160
>gi|2073111|dbj|BAA19850.1| Y box protein 2 [Carassius auratus]
Length = 297
Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 59/78 (75%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+KF +S+G GE+V+F++ K
Sbjct: 21 VEGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGEVVEFDVVEAAK 80
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP GIPV+G+
Sbjct: 81 GSEAANVTGPGGIPVKGS 98
Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 59/78 (75%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+KF +S+G GE+V+F++ K
Sbjct: 21 VEGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGEVVEFDVVEAAK 80
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP GIPV+G+
Sbjct: 81 GSEAANVTGPGGIPVKGS 98
>gi|354549569|gb|AER27829.1| Y box binding protein 1 [Sus scrofa]
Length = 220
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 11 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 70
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 71 GAEAANVTGPGGVPVQGS 88
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 11 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 70
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 71 GAEAANVTGPGGVPVQGS 88
>gi|51494815|gb|AAH27785.1| Csda protein [Mus musculus]
Length = 299
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 83 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 142
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G+PV+G+
Sbjct: 143 GAEAANVTGPDGVPVEGS 160
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 83 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 142
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G+PV+G+
Sbjct: 143 GAEAANVTGPDGVPVEGS 160
>gi|45382293|ref|NP_990737.1| cold shock domain protein A [Gallus gallus]
gi|727428|gb|AAA64706.1| Rous sarcoma virus transcription enhancer factor II [Gallus gallus]
Length = 298
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ S+G GE V+F++ G+K
Sbjct: 88 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLASVGDGETVEFDVVEGEK 147
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G+PV+G+
Sbjct: 148 GAEAANVTGPDGVPVEGS 165
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ S+G GE V+F++ G+K
Sbjct: 88 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLASVGDGETVEFDVVEGEK 147
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G+PV+G+
Sbjct: 148 GAEAANVTGPDGVPVEGS 165
>gi|326932610|ref|XP_003212408.1| PREDICTED: nuclease-sensitive element-binding protein 1-like,
partial [Meleagris gallopavo]
Length = 134
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 4 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 63
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 64 GAEAANVTGPGGVPVQGS 81
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 4 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 63
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 64 GAEAANVTGPGGVPVQGS 81
>gi|449266809|gb|EMC77811.1| DNA-binding protein A, partial [Columba livia]
Length = 214
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 4 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 63
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G+PV+G+
Sbjct: 64 GAEAANVTGPDGVPVEGS 81
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 4 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 63
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G+PV+G+
Sbjct: 64 GAEAANVTGPDGVPVEGS 81
>gi|426371670|ref|XP_004052765.1| PREDICTED: DNA-binding protein A isoform 1 [Gorilla gorilla
gorilla]
gi|410224324|gb|JAA09381.1| cold shock domain protein A [Pan troglodytes]
gi|410332669|gb|JAA35281.1| cold shock domain protein A [Pan troglodytes]
Length = 373
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 92 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 151
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G+PV+G+
Sbjct: 152 GAEAANVTGPDGVPVEGS 169
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 92 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 151
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G+PV+G+
Sbjct: 152 GAEAANVTGPDGVPVEGS 169
>gi|402885169|ref|XP_003906038.1| PREDICTED: DNA-binding protein A [Papio anubis]
Length = 372
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 91 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 150
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G+PV+G+
Sbjct: 151 GAEAANVTGPDGVPVEGS 168
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 91 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 150
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G+PV+G+
Sbjct: 151 GAEAANVTGPDGVPVEGS 168
>gi|332838567|ref|XP_520744.3| PREDICTED: DNA-binding protein A isoform 2 [Pan troglodytes]
gi|410224320|gb|JAA09379.1| cold shock domain protein A [Pan troglodytes]
gi|410332673|gb|JAA35283.1| cold shock domain protein A [Pan troglodytes]
Length = 374
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 93 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 152
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G+PV+G+
Sbjct: 153 GAEAANVTGPDGVPVEGS 170
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 93 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 152
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G+PV+G+
Sbjct: 153 GAEAANVTGPDGVPVEGS 170
>gi|224586882|ref|NP_003642.3| DNA-binding protein A isoform a [Homo sapiens]
gi|97536050|sp|P16989.4|DBPA_HUMAN RecName: Full=DNA-binding protein A; AltName: Full=Cold shock
domain-containing protein A; AltName: Full=Single-strand
DNA-binding protein NF-GMB
gi|1167838|emb|CAA64631.1| DNA-binding protein [Homo sapiens]
gi|15026972|emb|CAA51261.1| cold shock domain protein A [Homo sapiens]
gi|15990406|gb|AAH15564.1| Cold shock domain protein A [Homo sapiens]
gi|119616607|gb|EAW96201.1| cold shock domain protein A, isoform CRA_a [Homo sapiens]
gi|119616608|gb|EAW96202.1| cold shock domain protein A, isoform CRA_a [Homo sapiens]
gi|189054724|dbj|BAG37363.1| unnamed protein product [Homo sapiens]
Length = 372
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 91 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 150
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G+PV+G+
Sbjct: 151 GAEAANVTGPDGVPVEGS 168
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 91 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 150
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G+PV+G+
Sbjct: 151 GAEAANVTGPDGVPVEGS 168
>gi|384949960|gb|AFI38585.1| DNA-binding protein A isoform a [Macaca mulatta]
gi|387540426|gb|AFJ70840.1| DNA-binding protein A isoform a [Macaca mulatta]
Length = 372
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 91 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 150
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G+PV+G+
Sbjct: 151 GAEAANVTGPDGVPVEGS 168
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 91 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 150
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G+PV+G+
Sbjct: 151 GAEAANVTGPDGVPVEGS 168
>gi|384949958|gb|AFI38584.1| DNA-binding protein A isoform a [Macaca mulatta]
Length = 371
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 90 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 149
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G+PV+G+
Sbjct: 150 GAEAANVTGPDGVPVEGS 167
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 90 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 149
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G+PV+G+
Sbjct: 150 GAEAANVTGPDGVPVEGS 167
>gi|403286765|ref|XP_003934646.1| PREDICTED: DNA-binding protein A [Saimiri boliviensis boliviensis]
Length = 379
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 101 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 160
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G+PV+G+
Sbjct: 161 GAEAANVTGPDGVPVEGS 178
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 101 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 160
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G+PV+G+
Sbjct: 161 GAEAANVTGPDGVPVEGS 178
>gi|297691167|ref|XP_002822965.1| PREDICTED: DNA-binding protein A isoform 1 [Pongo abelii]
Length = 371
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 90 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 149
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G+PV+G+
Sbjct: 150 GAEAANVTGPDGVPVEGS 167
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 90 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 149
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G+PV+G+
Sbjct: 150 GAEAANVTGPDGVPVEGS 167
>gi|14250672|gb|AAH08801.1| Cold shock domain protein A [Homo sapiens]
gi|18314511|gb|AAH21926.1| Cold shock domain protein A [Homo sapiens]
gi|123984533|gb|ABM83612.1| cold shock domain protein A [synthetic construct]
gi|123998509|gb|ABM86856.1| cold shock domain protein A [synthetic construct]
gi|208966070|dbj|BAG73049.1| cold shock domain protein A [synthetic construct]
Length = 372
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 91 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 150
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G+PV+G+
Sbjct: 151 GAEAANVTGPDGVPVEGS 168
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 91 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 150
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G+PV+G+
Sbjct: 151 GAEAANVTGPDGVPVEGS 168
>gi|326912755|ref|XP_003202712.1| PREDICTED: nuclease-sensitive element-binding protein 1-like
[Meleagris gallopavo]
Length = 253
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 43 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 102
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G+PV+G+
Sbjct: 103 GAEAANVTGPDGVPVEGS 120
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 43 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 102
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G+PV+G+
Sbjct: 103 GAEAANVTGPDGVPVEGS 120
>gi|301791962|ref|XP_002930949.1| PREDICTED: nuclease-sensitive element-binding protein 1-like,
partial [Ailuropoda melanoleuca]
Length = 416
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 59/78 (75%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
VRG VK+++ K G+GFI+R D +ED+FVH+ +I + NP K+ +S+G GE V+F++ G++
Sbjct: 69 VRGSVKWFNVKNGYGFISRHDTQEDVFVHQRAITRNNPHKYQRSVGDGETVEFDVVQGER 128
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G PVQG+
Sbjct: 129 GTEAANVTGPAGAPVQGS 146
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 59/78 (75%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
VRG VK+++ K G+GFI+R D +ED+FVH+ +I + NP K+ +S+G GE V+F++ G++
Sbjct: 69 VRGSVKWFNVKNGYGFISRHDTQEDVFVHQRAITRNNPHKYQRSVGDGETVEFDVVQGER 128
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G PVQG+
Sbjct: 129 GTEAANVTGPAGAPVQGS 146
>gi|440892787|gb|ELR45831.1| DNA-binding protein A, partial [Bos grunniens mutus]
Length = 285
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 6 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 65
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G+PV+G+
Sbjct: 66 GAEAANVTGPDGVPVEGS 83
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 6 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 65
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G+PV+G+
Sbjct: 66 GAEAANVTGPDGVPVEGS 83
>gi|432920116|ref|XP_004079845.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein
LOC100049372 [Oryzias latipes]
Length = 393
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 61/83 (73%)
Query: 109 TVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGK 168
V+G VK+++ + G+GFI R D KED+FVH+++I K NP+KF +S+G GE+V+F++
Sbjct: 29 AVQGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGEVVEFDVIEAA 88
Query: 169 KDIEAINVTGPNGIPVQGAPKVP 191
K EA NVTGP GIPV+G+ P
Sbjct: 89 KGSEAANVTGPGGIPVKGSRYAP 111
Score = 92.4 bits (228), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 41/79 (51%), Positives = 60/79 (75%)
Query: 8 TVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGK 67
V+G VK+++ + G+GFI R D KED+FVH+++I K NP+KF +S+G GE+V+F++
Sbjct: 29 AVQGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGEVVEFDVIEAA 88
Query: 68 KDIEAINVTGPNGIPVQGA 86
K EA NVTGP GIPV+G+
Sbjct: 89 KGSEAANVTGPGGIPVKGS 107
>gi|74007477|ref|XP_549034.2| PREDICTED: DNA-binding protein A-like [Canis lupus familiaris]
Length = 315
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
VRG VK+++ K G+GFI+R D +ED+FVH+++I + NP K+ +S+G GE V+F++ G++
Sbjct: 25 VRGSVKWFNVKNGYGFISRHDTQEDVFVHQTAITRNNPHKYQRSVGDGETVEFDVVQGER 84
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G PVQG+
Sbjct: 85 GTEAANVTGPAGAPVQGS 102
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
VRG VK+++ K G+GFI+R D +ED+FVH+++I + NP K+ +S+G GE V+F++ G++
Sbjct: 25 VRGSVKWFNVKNGYGFISRHDTQEDVFVHQTAITRNNPHKYQRSVGDGETVEFDVVQGER 84
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G PVQG+
Sbjct: 85 GTEAANVTGPAGAPVQGS 102
>gi|213510928|ref|NP_001133543.1| Y-box-binding protein 2-A [Salmo salar]
gi|209154422|gb|ACI33443.1| Y-box-binding protein 2-A [Salmo salar]
Length = 328
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V+G VK+++ + G+GFI R D KED+FVH+++I K NP+KF +S+G GE+V+F++ K
Sbjct: 30 VQGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGEVVEFDVVEAAK 89
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PV+G+
Sbjct: 90 GSEAANVTGPGGVPVKGS 107
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V+G VK+++ + G+GFI R D KED+FVH+++I K NP+KF +S+G GE+V+F++ K
Sbjct: 30 VQGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGEVVEFDVVEAAK 89
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PV+G+
Sbjct: 90 GSEAANVTGPGGVPVKGS 107
>gi|14270383|emb|CAC39436.1| cold-shock domain protein [Oryzias latipes]
Length = 366
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 61/83 (73%)
Query: 109 TVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGK 168
V+G VK+++ + G+GFI R D KED+FVH+++I K NP+KF +S+G GE+V+F++
Sbjct: 2 AVQGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGEVVEFDVIEAA 61
Query: 169 KDIEAINVTGPNGIPVQGAPKVP 191
K EA NVTGP GIPV+G+ P
Sbjct: 62 KGSEAANVTGPGGIPVKGSRYAP 84
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/79 (51%), Positives = 60/79 (75%)
Query: 8 TVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGK 67
V+G VK+++ + G+GFI R D KED+FVH+++I K NP+KF +S+G GE+V+F++
Sbjct: 2 AVQGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGEVVEFDVIEAA 61
Query: 68 KDIEAINVTGPNGIPVQGA 86
K EA NVTGP GIPV+G+
Sbjct: 62 KGSEAANVTGPGGIPVKGS 80
>gi|301784071|ref|XP_002927454.1| PREDICTED: hypothetical protein LOC100472801 [Ailuropoda
melanoleuca]
Length = 371
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 60 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 119
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 120 GAEAANVTGPGGVPVQGS 137
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 60 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 119
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 120 GAEAANVTGPGGVPVQGS 137
>gi|343961249|dbj|BAK62214.1| DNA-binding protein A [Pan troglodytes]
Length = 374
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 93 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 152
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G+PV+G+
Sbjct: 153 GAEAANVTGPDGVPVEGS 170
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 93 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 152
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G+PV+G+
Sbjct: 153 GAEAANVTGPDGVPVEGS 170
>gi|291411891|ref|XP_002722201.1| PREDICTED: cold shock domain protein A [Oryctolagus cuniculus]
Length = 376
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 96 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 155
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G+PV+G+
Sbjct: 156 GAEAANVTGPDGVPVEGS 173
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 96 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 155
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G+PV+G+
Sbjct: 156 GAEAANVTGPDGVPVEGS 173
>gi|426226980|ref|XP_004023365.1| PREDICTED: LOW QUALITY PROTEIN: DNA-binding protein A-like,
partial [Ovis aries]
Length = 270
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 16 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 75
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G+PV+G+
Sbjct: 76 GAEAANVTGPDGVPVEGS 93
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 16 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 75
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G+PV+G+
Sbjct: 76 GAEAANVTGPDGVPVEGS 93
>gi|56462192|gb|AAV91379.1| hypothetical protein 18 [Lonomia obliqua]
Length = 254
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 44/97 (45%), Positives = 68/97 (70%), Gaps = 3/97 (3%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ K G+GFI R D KED+FVH+++I++ NP+K +S+G GE+V+F + G+K
Sbjct: 29 VSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEVVEFAVVAGEK 88
Query: 69 DIEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFP 105
EA VTGP G PV+G+P +++ G YR ++P
Sbjct: 89 GCEAAGVTGPGGEPVKGSP-YAADKRRGYYR--QYYP 122
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 59/82 (71%)
Query: 107 VHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGV 166
V G VK+++ K G+GFI R D KED+FVH+++I++ NP+K +S+G GE+V+F +
Sbjct: 26 AEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEVVEFAVVA 85
Query: 167 GKKDIEAINVTGPNGIPVQGAP 188
G+K EA VTGP G PV+G+P
Sbjct: 86 GEKGCEAAGVTGPGGEPVKGSP 107
>gi|532211|gb|AAC34193.1| Y-box binding protein [Mus musculus]
Length = 274
Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 69 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 128
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G+PV+G+
Sbjct: 129 GAEAANVTGPDGVPVEGS 146
Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 69 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 128
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G+PV+G+
Sbjct: 129 GAEAANVTGPDGVPVEGS 146
>gi|281344168|gb|EFB19752.1| hypothetical protein PANDA_021601 [Ailuropoda melanoleuca]
Length = 310
Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 59/78 (75%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
VRG VK+++ K G+GFI+R D +ED+FVH+ +I + NP K+ +S+G GE V+F++ G++
Sbjct: 36 VRGSVKWFNVKNGYGFISRHDTQEDVFVHQRAITRNNPHKYQRSVGDGETVEFDVVQGER 95
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G PVQG+
Sbjct: 96 GTEAANVTGPAGAPVQGS 113
Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 59/78 (75%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
VRG VK+++ K G+GFI+R D +ED+FVH+ +I + NP K+ +S+G GE V+F++ G++
Sbjct: 36 VRGSVKWFNVKNGYGFISRHDTQEDVFVHQRAITRNNPHKYQRSVGDGETVEFDVVQGER 95
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G PVQG+
Sbjct: 96 GTEAANVTGPAGAPVQGS 113
>gi|259089373|ref|NP_001158512.1| Y-box binding protein [Oncorhynchus mykiss]
gi|219665297|gb|ACL31579.1| Y-box binding protein [Oncorhynchus mykiss]
Length = 301
Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D K+D+FVH+++I K NP+K+ +S+G GEIV+F++ G+K
Sbjct: 40 VLGTVKWFNVRNGYGFINRNDTKDDVFVHQTAIKKNNPRKYLRSVGDGEIVEFDVVEGEK 99
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 100 GAEAANVTGPAGVPVQGS 117
Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 61/78 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D K+D+FVH+++I K NP+K+ +S+G GEIV+F++ G+K
Sbjct: 40 VLGTVKWFNVRNGYGFINRNDTKDDVFVHQTAIKKNNPRKYLRSVGDGEIVEFDVVEGEK 99
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 100 GAEAANVTGPAGVPVQGS 117
>gi|109095654|ref|XP_001118505.1| PREDICTED: DNA-binding protein A-like [Macaca mulatta]
Length = 407
Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 126 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 185
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G+PV+G+
Sbjct: 186 GAEAANVTGPDGVPVEGS 203
Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 126 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 185
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G+PV+G+
Sbjct: 186 GAEAANVTGPDGVPVEGS 203
>gi|47123238|gb|AAH70000.1| Y box binding protein 1 [Danio rerio]
Length = 310
Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 59/78 (75%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F + G+K
Sbjct: 39 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFAVVEGEK 98
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 99 GAEAANVTGPGGVPVQGS 116
Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 59/78 (75%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F + G+K
Sbjct: 39 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFAVVEGEK 98
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 99 GAEAANVTGPGGVPVQGS 116
>gi|311256155|ref|XP_003126523.1| PREDICTED: DNA-binding protein A-like isoform 1 [Sus scrofa]
Length = 380
Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 100 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 159
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G+PV+G+
Sbjct: 160 GAEAANVTGPDGVPVEGS 177
Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 100 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 159
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G+PV+G+
Sbjct: 160 GAEAANVTGPDGVPVEGS 177
>gi|432103373|gb|ELK30487.1| DNA-binding protein A, partial [Myotis davidii]
Length = 285
Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 6 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 65
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G+PV+G+
Sbjct: 66 GAEAANVTGPDGVPVEGS 83
Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 6 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 65
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G+PV+G+
Sbjct: 66 GAEAANVTGPDGVPVEGS 83
>gi|301789934|ref|XP_002930376.1| PREDICTED: DNA-binding protein A-like [Ailuropoda melanoleuca]
Length = 335
Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 56 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 115
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G+PV+G+
Sbjct: 116 GAEAANVTGPDGVPVEGS 133
Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 56 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 115
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G+PV+G+
Sbjct: 116 GAEAANVTGPDGVPVEGS 133
>gi|355785893|gb|EHH66076.1| Cold shock domain-containing protein A, partial [Macaca
fascicularis]
Length = 287
Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 6 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 65
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G+PV+G+
Sbjct: 66 GAEAANVTGPDGVPVEGS 83
Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 6 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 65
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G+PV+G+
Sbjct: 66 GAEAANVTGPDGVPVEGS 83
>gi|354496982|ref|XP_003510602.1| PREDICTED: DNA-binding protein A-like [Cricetulus griseus]
Length = 359
Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 81 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 140
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G+PV+G+
Sbjct: 141 GAEAANVTGPDGVPVEGS 158
Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 81 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 140
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G+PV+G+
Sbjct: 141 GAEAANVTGPDGVPVEGS 158
>gi|74007889|ref|XP_531701.2| PREDICTED: nuclease-sensitive element-binding protein 1-like [Canis
lupus familiaris]
Length = 399
Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K +P+K+ +S+G GE V+F++ G+K
Sbjct: 134 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNHPRKYLRSVGDGETVEFDVVEGEK 193
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 194 GAEAANVTGPGGVPVQGS 211
Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K +P+K+ +S+G GE V+F++ G+K
Sbjct: 134 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNHPRKYLRSVGDGETVEFDVVEGEK 193
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 194 GAEAANVTGPGGVPVQGS 211
>gi|194131839|gb|ACF33225.1| Y-box protein Lyb2 [Lethenteron camtschaticum]
Length = 181
Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 77/125 (61%), Gaps = 7/125 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ K G+GFI R D KED+F+H+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 63 VLGTVKWFNVKNGYGFINRNDTKEDVFIHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 122
Query: 69 DIEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFITR 128
EA NVTGP+G VQG+ ++ G YR +P ++ F K+ GF+
Sbjct: 123 GAEAANVTGPDGAAVQGSRYAADR---GRYRRS--YPQRRRPNDVLCFI--KQRVGFVNT 175
Query: 129 LDNKE 133
NK+
Sbjct: 176 CGNKD 180
Score = 89.4 bits (220), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 59/78 (75%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ K G+GFI R D KED+F+H+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 63 VLGTVKWFNVKNGYGFINRNDTKEDVFIHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 122
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G VQG+
Sbjct: 123 GAEAANVTGPDGAAVQGS 140
>gi|355563999|gb|EHH20499.1| Cold shock domain-containing protein A, partial [Macaca mulatta]
Length = 287
Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 6 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 65
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G+PV+G+
Sbjct: 66 GAEAANVTGPDGVPVEGS 83
Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 6 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 65
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G+PV+G+
Sbjct: 66 GAEAANVTGPDGVPVEGS 83
>gi|181484|gb|AAA35749.1| DNA-binding protein A, partial [Homo sapiens]
Length = 412
Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 161 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 220
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G+PV+G+
Sbjct: 221 GAEAANVTGPDGVPVEGS 238
Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 161 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 220
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G+PV+G+
Sbjct: 221 GAEAANVTGPDGVPVEGS 238
>gi|118344374|ref|NP_001072010.1| Y-box protein 1/2/3 [Ciona intestinalis]
gi|70571490|dbj|BAE06759.1| Y-box protein 1/2/3 [Ciona intestinalis]
Length = 320
Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 65/83 (78%), Gaps = 2/83 (2%)
Query: 106 AVHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIG 165
A H G+VK+++ + G+GF+ R DNKED+F+H+++I+K NPKK+ +S+G GE V+F++
Sbjct: 23 ASH-CSGVVKWFNVRNGYGFVNRDDNKEDVFIHQTAIIKNNPKKYLRSVGDGENVEFDVV 81
Query: 166 VGKKDI-EAINVTGPNGIPVQGA 187
G+K + EA NVTGPNG PV+G+
Sbjct: 82 EGEKGLPEAANVTGPNGEPVKGS 104
Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 63/77 (81%), Gaps = 1/77 (1%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 70
G+VK+++ + G+GF+ R DNKED+F+H+++I+K NPKK+ +S+G GE V+F++ G+K +
Sbjct: 28 GVVKWFNVRNGYGFVNRDDNKEDVFIHQTAIIKNNPKKYLRSVGDGENVEFDVVEGEKGL 87
Query: 71 -EAINVTGPNGIPVQGA 86
EA NVTGPNG PV+G+
Sbjct: 88 PEAANVTGPNGEPVKGS 104
>gi|403275363|ref|XP_003929419.1| PREDICTED: Y-box-binding protein 2 [Saimiri boliviensis
boliviensis]
Length = 517
Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 43/87 (49%), Positives = 64/87 (73%), Gaps = 1/87 (1%)
Query: 105 PAVHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 164
PA+ V G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +S+G GE V+F++
Sbjct: 249 PAIR-VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDV 307
Query: 165 GVGKKDIEAINVTGPNGIPVQGAPKVP 191
G+K EA NVTGP G+PV+G+ P
Sbjct: 308 VEGEKGAEAANVTGPGGVPVKGSRYAP 334
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +S+G GE V+F++ G+K
Sbjct: 253 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEK 312
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PV+G+
Sbjct: 313 GAEAANVTGPGGVPVKGS 330
>gi|50978844|ref|NP_001003127.1| DNA-binding protein A [Canis lupus familiaris]
gi|8100510|gb|AAF72335.1|AF171061_1 Y-box protein ZONAB-A [Canis lupus familiaris]
Length = 304
Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH ++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 93 VLGTVKWFNVRNGYGFINRNDTKEDVFVHHTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 152
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G+PV+G+
Sbjct: 153 GAEAANVTGPDGVPVEGS 170
Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH ++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 93 VLGTVKWFNVRNGYGFINRNDTKEDVFVHHTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 152
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G+PV+G+
Sbjct: 153 GAEAANVTGPDGVPVEGS 170
>gi|950340|gb|AAA79243.1| DNA-binding protein A [Homo sapiens]
Length = 342
Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 91 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 150
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G+PV+G+
Sbjct: 151 GAEAANVTGPDGVPVEGS 168
Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 91 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 150
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G+PV+G+
Sbjct: 151 GAEAANVTGPDGVPVEGS 168
>gi|443724770|gb|ELU12623.1| hypothetical protein CAPTEDRAFT_166603 [Capitella teleta]
Length = 371
Score = 92.4 bits (228), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ K G+GFI R D +ED+FVH+++IVK NP+K+ +S+G GE V+F++ G+K
Sbjct: 24 VTGTVKWFNVKNGYGFINRDDTQEDVFVHQTAIVKNNPRKYLRSVGDGEKVEFDVVEGEK 83
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G PVQG+
Sbjct: 84 GNEAANVTGPEGEPVQGS 101
Score = 92.4 bits (228), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ K G+GFI R D +ED+FVH+++IVK NP+K+ +S+G GE V+F++ G+K
Sbjct: 24 VTGTVKWFNVKNGYGFINRDDTQEDVFVHQTAIVKNNPRKYLRSVGDGEKVEFDVVEGEK 83
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G PVQG+
Sbjct: 84 GNEAANVTGPEGEPVQGS 101
>gi|350590843|ref|XP_003483149.1| PREDICTED: Y-box-binding protein 2-like [Sus scrofa]
Length = 394
Score = 92.0 bits (227), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 70/100 (70%), Gaps = 1/100 (1%)
Query: 89 SSSETVSGTYRNDSFFPAVH-TVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNP 147
++S T + R+ + P + V G VK+++ + G+GFI R D KED+FVH+++I + NP
Sbjct: 74 AASGTSAPPARSQADKPVLAIQVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNP 133
Query: 148 KKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGA 187
+KF +S+G GE V+F++ G+K EA NVTGP G+PV+G+
Sbjct: 134 RKFLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVKGS 173
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +S+G GE V+F++ G+K
Sbjct: 96 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEK 155
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PV+G+
Sbjct: 156 GAEAANVTGPGGVPVKGS 173
>gi|118344436|ref|NP_001072039.1| Y-box protein 1/2/3 [Ciona intestinalis]
gi|70571495|dbj|BAE06760.1| Y-box protein 1/2/3 [Ciona intestinalis]
Length = 273
Score = 92.0 bits (227), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 65/83 (78%), Gaps = 2/83 (2%)
Query: 106 AVHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIG 165
A H G+VK+++ + G+GF+ R DNKED+F+H+++I+K NPKK+ +S+G GE V+F++
Sbjct: 23 ASH-CSGVVKWFNVRNGYGFVNRDDNKEDVFIHQTAIIKNNPKKYLRSVGDGENVEFDVV 81
Query: 166 VGKKDI-EAINVTGPNGIPVQGA 187
G+K + EA NVTGPNG PV+G+
Sbjct: 82 EGEKGLPEAANVTGPNGEPVKGS 104
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 63/77 (81%), Gaps = 1/77 (1%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 70
G+VK+++ + G+GF+ R DNKED+F+H+++I+K NPKK+ +S+G GE V+F++ G+K +
Sbjct: 28 GVVKWFNVRNGYGFVNRDDNKEDVFIHQTAIIKNNPKKYLRSVGDGENVEFDVVEGEKGL 87
Query: 71 -EAINVTGPNGIPVQGA 86
EA NVTGPNG PV+G+
Sbjct: 88 PEAANVTGPNGEPVKGS 104
>gi|240849145|ref|NP_001155549.1| Y-box protein Ct-p40-like [Acyrthosiphon pisum]
gi|239788387|dbj|BAH70879.1| ACYPI003867 [Acyrthosiphon pisum]
Length = 305
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/91 (51%), Positives = 66/91 (72%), Gaps = 1/91 (1%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G+VK+++ K G+GFI R D KEDIFVH+S+I+K NPKK +S+G GE V+F++ G+K
Sbjct: 28 VTGVVKWFNVKSGYGFINRNDTKEDIFVHQSAIIKNNPKKIVRSVGDGETVEFDVVEGEK 87
Query: 69 DIEAINVTGPNGIPVQGAPKSSSETVSGTYR 99
EA NVTGP+G V+G+P ++E YR
Sbjct: 88 GHEAANVTGPDGEAVKGSP-YAAERRRNNYR 117
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/79 (55%), Positives = 61/79 (77%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G+VK+++ K G+GFI R D KEDIFVH+S+I+K NPKK +S+G GE V+F++ G+K
Sbjct: 28 VTGVVKWFNVKSGYGFINRNDTKEDIFVHQSAIIKNNPKKIVRSVGDGETVEFDVVEGEK 87
Query: 170 DIEAINVTGPNGIPVQGAP 188
EA NVTGP+G V+G+P
Sbjct: 88 GHEAANVTGPDGEAVKGSP 106
>gi|189054669|dbj|BAG37519.1| unnamed protein product [Homo sapiens]
Length = 364
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 72/106 (67%), Gaps = 5/106 (4%)
Query: 87 PKSSSETVSGT----YRNDSFFPAVH-TVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSS 141
P + + VSGT R+ + P + V G VK+++ + G+GFI R D KED+FVH+++
Sbjct: 66 PGNPATAVSGTPAPPARSQADKPVLAIQVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTA 125
Query: 142 IVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGA 187
I + NP+KF +S+G GE V+F++ G+K EA NVTGP G+PV+G+
Sbjct: 126 IKRNNPRKFLRSVGDGETVEFDVVEGEKGAEATNVTGPGGVPVKGS 171
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +S+G GE V+F++ G+K
Sbjct: 94 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEK 153
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PV+G+
Sbjct: 154 GAEATNVTGPGGVPVKGS 171
>gi|194751983|ref|XP_001958302.1| GF10852 [Drosophila ananassae]
gi|190625584|gb|EDV41108.1| GF10852 [Drosophila ananassae]
Length = 347
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ K G+GFI R D KED+FVH+S+I + NPKK +S+G GE+V+F++ +G+K
Sbjct: 61 VTGTVKWFNVKSGYGFINRNDTKEDVFVHQSAIARNNPKKAVRSVGDGEVVEFDVVIGEK 120
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G PV+G+
Sbjct: 121 GNEAANVTGPSGEPVRGS 138
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 61/78 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ K G+GFI R D KED+FVH+S+I + NPKK +S+G GE+V+F++ +G+K
Sbjct: 61 VTGTVKWFNVKSGYGFINRNDTKEDVFVHQSAIARNNPKKAVRSVGDGEVVEFDVVIGEK 120
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G PV+G+
Sbjct: 121 GNEAANVTGPSGEPVRGS 138
>gi|62089378|dbj|BAD93133.1| CSDA protein variant [Homo sapiens]
Length = 134
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 24 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 83
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G+PV+G+
Sbjct: 84 GAEAANVTGPDGVPVEGS 101
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 24 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 83
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G+PV+G+
Sbjct: 84 GAEAANVTGPDGVPVEGS 101
>gi|402898539|ref|XP_003919508.1| PREDICTED: LOW QUALITY PROTEIN: Y-box-binding protein 2 [Papio
anubis]
Length = 359
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +S+G GE V+F++ G+K
Sbjct: 95 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEK 154
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PV+G+
Sbjct: 155 GAEAANVTGPGGVPVKGS 172
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +S+G GE V+F++ G+K
Sbjct: 95 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEK 154
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PV+G+
Sbjct: 155 GAEAANVTGPGGVPVKGS 172
>gi|335285938|ref|XP_003131986.2| PREDICTED: Y-box-binding protein 2-like [Sus scrofa]
Length = 360
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +S+G GE V+F++ G+K
Sbjct: 96 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEK 155
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PV+G+
Sbjct: 156 GAEAANVTGPGGVPVKGS 173
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +S+G GE V+F++ G+K
Sbjct: 96 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEK 155
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PV+G+
Sbjct: 156 GAEAANVTGPGGVPVKGS 173
>gi|426383887|ref|XP_004058508.1| PREDICTED: Y-box-binding protein 2 [Gorilla gorilla gorilla]
Length = 359
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +S+G GE V+F++ G+K
Sbjct: 95 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEK 154
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PV+G+
Sbjct: 155 GAEATNVTGPGGVPVKGS 172
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +S+G GE V+F++ G+K
Sbjct: 95 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEK 154
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PV+G+
Sbjct: 155 GAEATNVTGPGGVPVKGS 172
>gi|156415990|ref|NP_057066.2| Y-box-binding protein 2 [Homo sapiens]
gi|116242847|sp|Q9Y2T7.2|YBOX2_HUMAN RecName: Full=Y-box-binding protein 2; AltName: Full=Contrin;
AltName: Full=DNA-binding protein C; Short=Dbpc;
AltName: Full=Germ cell-specific Y-box-binding protein;
AltName: Full=MSY2 homolog
gi|21707292|gb|AAH33800.1| Y box binding protein 2 [Homo sapiens]
Length = 364
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 72/106 (67%), Gaps = 5/106 (4%)
Query: 87 PKSSSETVSGT----YRNDSFFPAVH-TVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSS 141
P + + VSGT R+ + P + V G VK+++ + G+GFI R D KED+FVH+++
Sbjct: 66 PGNPATAVSGTPAPPARSQADKPVLAIQVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTA 125
Query: 142 IVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGA 187
I + NP+KF +S+G GE V+F++ G+K EA NVTGP G+PV+G+
Sbjct: 126 IKRNNPRKFLRSVGDGETVEFDVVEGEKGAEATNVTGPGGVPVKGS 171
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +S+G GE V+F++ G+K
Sbjct: 94 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEK 153
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PV+G+
Sbjct: 154 GAEATNVTGPGGVPVKGS 171
>gi|4837737|gb|AAD30662.1| germ cell specific Y-box binding protein [Homo sapiens]
gi|28838612|gb|AAH47760.1| Y box binding protein 2 [Homo sapiens]
gi|119610629|gb|EAW90223.1| Y box binding protein 2, isoform CRA_a [Homo sapiens]
gi|119610630|gb|EAW90224.1| Y box binding protein 2, isoform CRA_a [Homo sapiens]
Length = 364
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 72/106 (67%), Gaps = 5/106 (4%)
Query: 87 PKSSSETVSGT----YRNDSFFPAVH-TVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSS 141
P + + VSGT R+ + P + V G VK+++ + G+GFI R D KED+FVH+++
Sbjct: 66 PGNPATAVSGTPAPPARSQADKPVLAIQVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTA 125
Query: 142 IVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGA 187
I + NP+KF +S+G GE V+F++ G+K EA NVTGP G+PV+G+
Sbjct: 126 IKRNNPRKFLRSVGDGETVEFDVVEGEKGAEATNVTGPGGVPVKGS 171
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +S+G GE V+F++ G+K
Sbjct: 94 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEK 153
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PV+G+
Sbjct: 154 GAEATNVTGPGGVPVKGS 171
>gi|8100512|gb|AAF72336.1|AF171062_1 Y-box protein ZONAB-B [Canis lupus familiaris]
Length = 372
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH ++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 93 VLGTVKWFNVRNGYGFINRNDTKEDVFVHHTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 152
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G+PV+G+
Sbjct: 153 GAEAANVTGPDGVPVEGS 170
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH ++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 93 VLGTVKWFNVRNGYGFINRNDTKEDVFVHHTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 152
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G+PV+G+
Sbjct: 153 GAEAANVTGPDGVPVEGS 170
>gi|117956377|ref|NP_058571.2| Y-box-binding protein 2 [Mus musculus]
gi|187954905|gb|AAI41113.1| Y box protein 2 [Mus musculus]
Length = 359
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +S+G GE V+F++ G+K
Sbjct: 95 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEK 154
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PV+G+
Sbjct: 155 GAEAANVTGPGGVPVKGS 172
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +S+G GE V+F++ G+K
Sbjct: 95 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEK 154
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PV+G+
Sbjct: 155 GAEAANVTGPGGVPVKGS 172
>gi|147904000|ref|NP_001091595.1| Y-box-binding protein 2 [Bos taurus]
gi|146186879|gb|AAI40615.1| YBX2 protein [Bos taurus]
gi|296476769|tpg|DAA18884.1| TPA: Y box binding protein 2 [Bos taurus]
Length = 360
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +S+G GE V+F++ G+K
Sbjct: 96 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEK 155
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PV+G+
Sbjct: 156 GAEAANVTGPGGVPVKGS 173
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +S+G GE V+F++ G+K
Sbjct: 96 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEK 155
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PV+G+
Sbjct: 156 GAEAANVTGPGGVPVKGS 173
>gi|344290420|ref|XP_003416936.1| PREDICTED: Y-box-binding protein 2-like [Loxodonta africana]
Length = 359
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +S+G GE V+F++ G+K
Sbjct: 96 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEK 155
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PV+G+
Sbjct: 156 GAEAANVTGPGGVPVKGS 173
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +S+G GE V+F++ G+K
Sbjct: 96 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEK 155
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PV+G+
Sbjct: 156 GAEAANVTGPGGVPVKGS 173
>gi|57086603|ref|XP_546585.1| PREDICTED: Y-box-binding protein 2 [Canis lupus familiaris]
Length = 361
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +S+G GE V+F++ G+K
Sbjct: 96 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEK 155
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PV+G+
Sbjct: 156 GAEAANVTGPGGVPVKGS 173
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +S+G GE V+F++ G+K
Sbjct: 96 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEK 155
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PV+G+
Sbjct: 156 GAEAANVTGPGGVPVKGS 173
>gi|390463006|ref|XP_002748032.2| PREDICTED: Y-box-binding protein 2 [Callithrix jacchus]
Length = 364
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +S+G GE V+F++ G+K
Sbjct: 101 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEK 160
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PV+G+
Sbjct: 161 GAEAANVTGPGGVPVKGS 178
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +S+G GE V+F++ G+K
Sbjct: 101 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEK 160
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PV+G+
Sbjct: 161 GAEAANVTGPGGVPVKGS 178
>gi|114666139|ref|XP_511973.2| PREDICTED: Y-box-binding protein 2 [Pan troglodytes]
Length = 365
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +S+G GE V+F++ G+K
Sbjct: 95 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEK 154
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PV+G+
Sbjct: 155 GAEATNVTGPGGVPVKGS 172
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +S+G GE V+F++ G+K
Sbjct: 95 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEK 154
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PV+G+
Sbjct: 155 GAEATNVTGPGGVPVKGS 172
>gi|109113073|ref|XP_001107460.1| PREDICTED: y-box-binding protein 2-like [Macaca mulatta]
Length = 359
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +S+G GE V+F++ G+K
Sbjct: 95 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEK 154
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PV+G+
Sbjct: 155 GAEAANVTGPGGVPVKGS 172
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +S+G GE V+F++ G+K
Sbjct: 95 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEK 154
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PV+G+
Sbjct: 155 GAEAANVTGPGGVPVKGS 172
>gi|62656341|ref|XP_220618.3| PREDICTED: Y-box-binding protein 2 [Rattus norvegicus]
gi|109491139|ref|XP_001079683.1| PREDICTED: Y-box-binding protein 2 isoform 1 [Rattus norvegicus]
Length = 359
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +S+G GE V+F++ G+K
Sbjct: 95 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEK 154
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PV+G+
Sbjct: 155 GAEAANVTGPGGVPVKGS 172
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +S+G GE V+F++ G+K
Sbjct: 95 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEK 154
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PV+G+
Sbjct: 155 GAEAANVTGPGGVPVKGS 172
>gi|195173115|ref|XP_002027340.1| GL15684 [Drosophila persimilis]
gi|198465413|ref|XP_002134972.1| GA23502 [Drosophila pseudoobscura pseudoobscura]
gi|194113183|gb|EDW35226.1| GL15684 [Drosophila persimilis]
gi|198150149|gb|EDY73599.1| GA23502 [Drosophila pseudoobscura pseudoobscura]
Length = 335
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ K G+GFI R D KED+FVH+S+I + NPKK +S+G GE+V+F++ +G+K
Sbjct: 49 VTGTVKWFNVKSGYGFINRNDTKEDVFVHQSAIARNNPKKAVRSVGDGEVVEFDVVIGEK 108
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G PV+G+
Sbjct: 109 GNEAANVTGPSGEPVRGS 126
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 61/78 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ K G+GFI R D KED+FVH+S+I + NPKK +S+G GE+V+F++ +G+K
Sbjct: 49 VTGTVKWFNVKSGYGFINRNDTKEDVFVHQSAIARNNPKKAVRSVGDGEVVEFDVVIGEK 108
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G PV+G+
Sbjct: 109 GNEAANVTGPSGEPVRGS 126
>gi|291224890|ref|XP_002732435.1| PREDICTED: cold shock domain protein A short-like [Saccoglossus
kowalevskii]
Length = 283
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 58/81 (71%)
Query: 107 VHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGV 166
V G VK+++ K G+GFI R D ED+FVH+++I K NP+K+ +S+G GE V+F++
Sbjct: 21 AEKVSGTVKWFNVKNGYGFINRNDTNEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVE 80
Query: 167 GKKDIEAINVTGPNGIPVQGA 187
G+K EA NVTGP G PVQG+
Sbjct: 81 GEKGNEAANVTGPEGAPVQGS 101
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 58/81 (71%)
Query: 6 IHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGV 65
V G VK+++ K G+GFI R D ED+FVH+++I K NP+K+ +S+G GE V+F++
Sbjct: 21 AEKVSGTVKWFNVKNGYGFINRNDTNEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVE 80
Query: 66 GKKDIEAINVTGPNGIPVQGA 86
G+K EA NVTGP G PVQG+
Sbjct: 81 GEKGNEAANVTGPEGAPVQGS 101
>gi|397477911|ref|XP_003810307.1| PREDICTED: Y-box-binding protein 2, partial [Pan paniscus]
Length = 302
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +S+G GE V+F++ G+K
Sbjct: 32 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEK 91
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PV+G+
Sbjct: 92 GAEATNVTGPGGVPVKGS 109
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +S+G GE V+F++ G+K
Sbjct: 32 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEK 91
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PV+G+
Sbjct: 92 GAEATNVTGPGGVPVKGS 109
>gi|397519089|ref|XP_003829704.1| PREDICTED: LOW QUALITY PROTEIN: DNA-binding protein A [Pan
paniscus]
Length = 594
Score = 91.7 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 316 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 375
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G+PV+G+
Sbjct: 376 GAEAANVTGPDGVPVEGS 393
Score = 91.7 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 316 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 375
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G+PV+G+
Sbjct: 376 GAEAANVTGPDGVPVEGS 393
>gi|355731018|gb|AES10388.1| Y-box protein ZONAB-A [Mustela putorius furo]
Length = 145
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 46 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 105
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G+PV+G+
Sbjct: 106 GAEAANVTGPDGVPVEGS 123
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 46 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 105
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G+PV+G+
Sbjct: 106 GAEAANVTGPDGVPVEGS 123
>gi|432120184|gb|ELK38717.1| Nuclease-sensitive element-binding protein 1 [Myotis davidii]
Length = 343
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 58/78 (74%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ K G+GFI R D +ED+F+H S+I + NP K+ +S+G GE V+F++ GK+
Sbjct: 79 VSGSVKWFNVKHGYGFIRRHDTQEDVFIHHSAITRNNPHKYQRSVGDGETVEFDVVQGKQ 138
Query: 69 DIEAINVTGPNGIPVQGA 86
IEA NVTGP G PV+G+
Sbjct: 139 GIEAANVTGPGGAPVEGS 156
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 58/78 (74%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ K G+GFI R D +ED+F+H S+I + NP K+ +S+G GE V+F++ GK+
Sbjct: 79 VSGSVKWFNVKHGYGFIRRHDTQEDVFIHHSAITRNNPHKYQRSVGDGETVEFDVVQGKQ 138
Query: 170 DIEAINVTGPNGIPVQGA 187
IEA NVTGP G PV+G+
Sbjct: 139 GIEAANVTGPGGAPVEGS 156
>gi|395836766|ref|XP_003791321.1| PREDICTED: Y-box-binding protein 2 [Otolemur garnettii]
Length = 270
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 61/82 (74%)
Query: 106 AVHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIG 165
A V G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +S+G GE V+F++
Sbjct: 2 AAIQVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVV 61
Query: 166 VGKKDIEAINVTGPNGIPVQGA 187
G+K EA NVTGP G+PV+G+
Sbjct: 62 EGEKGAEAANVTGPGGVPVKGS 83
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +S+G GE V+F++ G+K
Sbjct: 6 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEK 65
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PV+G+
Sbjct: 66 GAEAANVTGPGGVPVKGS 83
>gi|426238806|ref|XP_004013335.1| PREDICTED: Y-box-binding protein 2 [Ovis aries]
Length = 299
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/86 (48%), Positives = 62/86 (72%)
Query: 106 AVHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIG 165
A V G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +S+G GE V+F++
Sbjct: 31 AAIQVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVV 90
Query: 166 VGKKDIEAINVTGPNGIPVQGAPKVP 191
G+K EA NVTGP G+PV+G+ P
Sbjct: 91 EGEKGAEAANVTGPGGVPVKGSRYAP 116
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +S+G GE V+F++ G+K
Sbjct: 35 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEK 94
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PV+G+
Sbjct: 95 GAEAANVTGPGGVPVKGS 112
>gi|194217599|ref|XP_001918171.1| PREDICTED: y-box-binding protein 2-like [Equus caballus]
Length = 291
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +S+G GE V+F++ G+K
Sbjct: 41 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEK 100
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PV+G+
Sbjct: 101 GAEAANVTGPGGVPVKGS 118
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +S+G GE V+F++ G+K
Sbjct: 41 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEK 100
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PV+G+
Sbjct: 101 GAEAANVTGPGGVPVKGS 118
>gi|392331789|ref|XP_003752387.1| PREDICTED: Y-box-binding protein 2 isoform 2 [Rattus norvegicus]
Length = 282
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +S+G GE V+F++ G+K
Sbjct: 18 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEK 77
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PV+G+
Sbjct: 78 GAEAANVTGPGGVPVKGS 95
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +S+G GE V+F++ G+K
Sbjct: 18 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEK 77
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PV+G+
Sbjct: 78 GAEAANVTGPGGVPVKGS 95
>gi|354469771|ref|XP_003497297.1| PREDICTED: Y-box-binding protein 2-like [Cricetulus griseus]
Length = 403
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +S+G GE V+F++ G+K
Sbjct: 139 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEK 198
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PV+G+
Sbjct: 199 GAEAANVTGPGGVPVKGS 216
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +S+G GE V+F++ G+K
Sbjct: 139 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEK 198
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PV+G+
Sbjct: 199 GAEAANVTGPGGVPVKGS 216
>gi|395748474|ref|XP_003780450.1| PREDICTED: LOW QUALITY PROTEIN: Y-box-binding protein 2 [Pongo
abelii]
Length = 358
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +S+G GE V+F++ G+K
Sbjct: 94 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEK 153
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PV+G+
Sbjct: 154 GAEAANVTGPGGVPVKGS 171
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +S+G GE V+F++ G+K
Sbjct: 94 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEK 153
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PV+G+
Sbjct: 154 GAEAANVTGPGGVPVKGS 171
>gi|307209281|gb|EFN86372.1| Y-box factor-like protein [Harpegnathos saltator]
Length = 278
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 62/82 (75%)
Query: 107 VHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGV 166
+ V G VK+++ K G+GFI R D +ED+FVH+S+I+K NP+K +S+G GE+V+F++ +
Sbjct: 21 ANKVTGTVKWFNVKSGYGFINRNDTREDVFVHQSAIIKNNPRKAVRSVGDGEVVEFDVVI 80
Query: 167 GKKDIEAINVTGPNGIPVQGAP 188
G+K EA NVTGP G V+G+P
Sbjct: 81 GEKGHEAANVTGPAGEAVKGSP 102
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/79 (51%), Positives = 61/79 (77%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ K G+GFI R D +ED+FVH+S+I+K NP+K +S+G GE+V+F++ +G+K
Sbjct: 24 VTGTVKWFNVKSGYGFINRNDTREDVFVHQSAIIKNNPRKAVRSVGDGEVVEFDVVIGEK 83
Query: 69 DIEAINVTGPNGIPVQGAP 87
EA NVTGP G V+G+P
Sbjct: 84 GHEAANVTGPAGEAVKGSP 102
>gi|195020347|ref|XP_001985176.1| GH16919 [Drosophila grimshawi]
gi|193898658|gb|EDV97524.1| GH16919 [Drosophila grimshawi]
Length = 345
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ K G+GFI R D KED+FVH+S+I + NPKK +S+G GE+V+F++ +G+K
Sbjct: 48 VTGTVKWFNVKSGYGFINRNDTKEDVFVHQSAIARNNPKKAVRSVGDGELVEFDVVIGEK 107
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G PV+G+
Sbjct: 108 GNEAANVTGPSGEPVRGS 125
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 61/78 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ K G+GFI R D KED+FVH+S+I + NPKK +S+G GE+V+F++ +G+K
Sbjct: 48 VTGTVKWFNVKSGYGFINRNDTKEDVFVHQSAIARNNPKKAVRSVGDGELVEFDVVIGEK 107
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G PV+G+
Sbjct: 108 GNEAANVTGPSGEPVRGS 125
>gi|440910817|gb|ELR60573.1| Y-box-binding protein 2, partial [Bos grunniens mutus]
Length = 268
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +S+G GE V+F++ G+K
Sbjct: 4 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEK 63
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PV+G+
Sbjct: 64 GAEAANVTGPGGVPVKGS 81
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +S+G GE V+F++ G+K
Sbjct: 4 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEK 63
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PV+G+
Sbjct: 64 GAEAANVTGPGGVPVKGS 81
>gi|195379482|ref|XP_002048507.1| GJ14010 [Drosophila virilis]
gi|194155665|gb|EDW70849.1| GJ14010 [Drosophila virilis]
Length = 340
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ K G+GFI R D KED+FVH+S+I + NPKK +S+G GE+V+F++ +G+K
Sbjct: 46 VTGTVKWFNVKSGYGFINRNDTKEDVFVHQSAIARNNPKKAVRSVGDGELVEFDVVIGEK 105
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G PV+G+
Sbjct: 106 GNEAANVTGPSGEPVRGS 123
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 61/78 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ K G+GFI R D KED+FVH+S+I + NPKK +S+G GE+V+F++ +G+K
Sbjct: 46 VTGTVKWFNVKSGYGFINRNDTKEDVFVHQSAIARNNPKKAVRSVGDGELVEFDVVIGEK 105
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G PV+G+
Sbjct: 106 GNEAANVTGPSGEPVRGS 123
>gi|195128621|ref|XP_002008760.1| GI13673 [Drosophila mojavensis]
gi|193920369|gb|EDW19236.1| GI13673 [Drosophila mojavensis]
Length = 335
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ K G+GFI R D KED+FVH+S+I + NPKK +S+G GE+V+F++ +G+K
Sbjct: 46 VTGTVKWFNVKSGYGFINRNDTKEDVFVHQSAIARNNPKKAVRSVGDGELVEFDVVIGEK 105
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G PV+G+
Sbjct: 106 GNEAANVTGPSGEPVRGS 123
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 61/78 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ K G+GFI R D KED+FVH+S+I + NPKK +S+G GE+V+F++ +G+K
Sbjct: 46 VTGTVKWFNVKSGYGFINRNDTKEDVFVHQSAIARNNPKKAVRSVGDGELVEFDVVIGEK 105
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G PV+G+
Sbjct: 106 GNEAANVTGPSGEPVRGS 123
>gi|24663131|ref|NP_524033.2| ypsilon schachtel, isoform A [Drosophila melanogaster]
gi|16769538|gb|AAL28988.1| LD37574p [Drosophila melanogaster]
gi|23096153|gb|AAF49961.3| ypsilon schachtel, isoform A [Drosophila melanogaster]
Length = 352
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ K G+GFI R D +ED+FVH+S+I + NPKK +S+G GE+V+F++ +G+K
Sbjct: 62 VTGTVKWFNVKSGYGFINRNDTREDVFVHQSAIARNNPKKAVRSVGDGEVVEFDVVIGEK 121
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G PV+G+
Sbjct: 122 GNEAANVTGPSGEPVRGS 139
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 61/78 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ K G+GFI R D +ED+FVH+S+I + NPKK +S+G GE+V+F++ +G+K
Sbjct: 62 VTGTVKWFNVKSGYGFINRNDTREDVFVHQSAIARNNPKKAVRSVGDGEVVEFDVVIGEK 121
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G PV+G+
Sbjct: 122 GNEAANVTGPSGEPVRGS 139
>gi|2970679|gb|AAC06034.1| Y box protein [Drosophila silvestris]
Length = 342
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ K G+GFI R D KED+FVH+S+I + NPKK +S+G GE+V+F++ +G+K
Sbjct: 48 VTGTVKWFNVKSGYGFINRNDTKEDVFVHQSAIARNNPKKAVRSVGDGELVEFDVVIGEK 107
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G PV+G+
Sbjct: 108 GNEAANVTGPSGEPVRGS 125
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 61/78 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ K G+GFI R D KED+FVH+S+I + NPKK +S+G GE+V+F++ +G+K
Sbjct: 48 VTGTVKWFNVKSGYGFINRNDTKEDVFVHQSAIARNNPKKAVRSVGDGELVEFDVVIGEK 107
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G PV+G+
Sbjct: 108 GNEAANVTGPSGEPVRGS 125
>gi|38142418|dbj|BAC99313.2| brain Y-box binding protein 1 [Rattus norvegicus]
Length = 322
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 59/78 (75%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ +K
Sbjct: 57 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEEEK 116
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 117 GAEAANVTGPGGVPVQGS 134
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 59/78 (75%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ +K
Sbjct: 57 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEEEK 116
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 117 GAEAANVTGPGGVPVQGS 134
>gi|148680545|gb|EDL12492.1| Y box protein 2 [Mus musculus]
Length = 268
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +S+G GE V+F++ G+K
Sbjct: 4 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEK 63
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PV+G+
Sbjct: 64 GAEAANVTGPGGVPVKGS 81
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +S+G GE V+F++ G+K
Sbjct: 4 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEK 63
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PV+G+
Sbjct: 64 GAEAANVTGPGGVPVKGS 81
>gi|148231227|ref|NP_001080330.1| B box-binding protein [Xenopus laevis]
gi|140247|sp|Q00436.1|YB3_XENLA RecName: Full=B box-binding protein; AltName: Full=Protein YB3
gi|65271|emb|CAA42778.1| YB3 [Xenopus laevis]
Length = 305
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 59/78 (75%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 37 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 96
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP +PVQG+
Sbjct: 97 GAEAANVTGPGPVPVQGS 114
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 59/78 (75%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 37 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 96
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP +PVQG+
Sbjct: 97 GAEAANVTGPGPVPVQGS 114
>gi|410979869|ref|XP_003996303.1| PREDICTED: Y-box-binding protein 2 [Felis catus]
Length = 350
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 61/82 (74%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +S+G GE V+F++ G+K
Sbjct: 86 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEK 145
Query: 170 DIEAINVTGPNGIPVQGAPKVP 191
EA NVTGP G+PV+G+ P
Sbjct: 146 GAEAANVTGPGGVPVKGSRYAP 167
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +S+G GE V+F++ G+K
Sbjct: 86 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEK 145
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PV+G+
Sbjct: 146 GAEAANVTGPGGVPVKGS 163
>gi|195493731|ref|XP_002094541.1| GE20150 [Drosophila yakuba]
gi|194180642|gb|EDW94253.1| GE20150 [Drosophila yakuba]
Length = 353
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ K G+GFI R D +ED+FVH+S+I + NPKK +S+G GE+V+F++ +G+K
Sbjct: 63 VTGTVKWFNVKSGYGFINRNDTREDVFVHQSAIARNNPKKAVRSVGDGEVVEFDVVIGEK 122
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G PV+G+
Sbjct: 123 GNEAANVTGPSGEPVRGS 140
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 61/78 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ K G+GFI R D +ED+FVH+S+I + NPKK +S+G GE+V+F++ +G+K
Sbjct: 63 VTGTVKWFNVKSGYGFINRNDTREDVFVHQSAIARNNPKKAVRSVGDGEVVEFDVVIGEK 122
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G PV+G+
Sbjct: 123 GNEAANVTGPSGEPVRGS 140
>gi|410906961|ref|XP_003966960.1| PREDICTED: B box-binding protein-like [Takifugu rubripes]
Length = 342
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V+G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +S+G GE+V+F++ K
Sbjct: 30 VQGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGEVVEFDVIEATK 89
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PV+G+
Sbjct: 90 GSEAANVTGPGGVPVKGS 107
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V+G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +S+G GE+V+F++ K
Sbjct: 30 VQGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGEVVEFDVIEATK 89
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PV+G+
Sbjct: 90 GSEAANVTGPGGVPVKGS 107
>gi|158295359|ref|XP_001237771.2| AGAP006108-PA [Anopheles gambiae str. PEST]
gi|157015999|gb|EAU76557.2| AGAP006108-PA [Anopheles gambiae str. PEST]
Length = 402
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G+VK+++ K G+GFI R D +ED+FVH+S+I + NPKK +S+G GE V+F++ +G+K
Sbjct: 88 VTGVVKWFNVKSGYGFINRGDTQEDVFVHQSAIARNNPKKAVRSVGDGEQVEFDVVIGEK 147
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G PV+G+
Sbjct: 148 GNEAANVTGPQGEPVKGS 165
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G+VK+++ K G+GFI R D +ED+FVH+S+I + NPKK +S+G GE V+F++ +G+K
Sbjct: 88 VTGVVKWFNVKSGYGFINRGDTQEDVFVHQSAIARNNPKKAVRSVGDGEQVEFDVVIGEK 147
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G PV+G+
Sbjct: 148 GNEAANVTGPQGEPVKGS 165
>gi|431919670|gb|ELK18054.1| Y-box-binding protein 2-B [Pteropus alecto]
Length = 320
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 59/78 (75%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
VRG VK+++ K+G+GFI R D +ED+FVH ++I + NP K+ +S+G GE V+F++ G++
Sbjct: 69 VRGSVKWFNVKKGYGFIRRHDTEEDVFVHHTAITRNNPHKYQRSVGDGETVEFDVVQGER 128
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G PV+G+
Sbjct: 129 GTEAANVTGPAGAPVEGS 146
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 59/78 (75%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
VRG VK+++ K+G+GFI R D +ED+FVH ++I + NP K+ +S+G GE V+F++ G++
Sbjct: 69 VRGSVKWFNVKKGYGFIRRHDTEEDVFVHHTAITRNNPHKYQRSVGDGETVEFDVVQGER 128
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G PV+G+
Sbjct: 129 GTEAANVTGPAGAPVEGS 146
>gi|392876712|gb|AFM87188.1| nuclease-sensitive element-binding protein 1-like protein
[Callorhinchus milii]
Length = 334
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 59/78 (75%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE +F++ G+K
Sbjct: 52 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETGEFDVVEGEK 111
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 112 GAEAANVTGPGGVPVQGS 129
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 59/78 (75%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE +F++ G+K
Sbjct: 52 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETGEFDVVEGEK 111
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 112 GAEAANVTGPGGVPVQGS 129
>gi|195589720|ref|XP_002084597.1| GD12750 [Drosophila simulans]
gi|194196606|gb|EDX10182.1| GD12750 [Drosophila simulans]
Length = 352
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ K G+GFI R D +ED+FVH+S+I + NPKK +S+G GE+V+F++ +G+K
Sbjct: 62 VTGTVKWFNVKSGYGFINRNDTREDVFVHQSAIARNNPKKAVRSVGDGEVVEFDVVIGEK 121
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G PV+G+
Sbjct: 122 GNEAANVTGPSGEPVRGS 139
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 61/78 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ K G+GFI R D +ED+FVH+S+I + NPKK +S+G GE+V+F++ +G+K
Sbjct: 62 VTGTVKWFNVKSGYGFINRNDTREDVFVHQSAIARNNPKKAVRSVGDGEVVEFDVVIGEK 121
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G PV+G+
Sbjct: 122 GNEAANVTGPSGEPVRGS 139
>gi|2502064|gb|AAB80761.1| Y-box binding protein A [Columba livia]
Length = 278
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 68 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQAAIKKNNPRKYLRSVGDGETVEFDVVEGEK 127
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NV GP+G+PV+G+
Sbjct: 128 GAEAANVHGPDGVPVEGS 145
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 68 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQAAIKKNNPRKYLRSVGDGETVEFDVVEGEK 127
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NV GP+G+PV+G+
Sbjct: 128 GAEAANVHGPDGVPVEGS 145
>gi|332849851|ref|XP_001142318.2| PREDICTED: Y-box-binding protein 2-like [Pan troglodytes]
Length = 333
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 60/80 (75%)
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 171
G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +++G GE V+F++ G+K
Sbjct: 65 GTVKWFNVRNGYGFINRNDTKEDVFVHQAAIKRNNPRKFLRTVGDGETVEFDVVEGEKGA 124
Query: 172 EAINVTGPNGIPVQGAPKVP 191
EA NVTGP G+PV+G+ P
Sbjct: 125 EATNVTGPGGVPVKGSRYAP 144
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 59/76 (77%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 70
G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +++G GE V+F++ G+K
Sbjct: 65 GTVKWFNVRNGYGFINRNDTKEDVFVHQAAIKRNNPRKFLRTVGDGETVEFDVVEGEKGA 124
Query: 71 EAINVTGPNGIPVQGA 86
EA NVTGP G+PV+G+
Sbjct: 125 EATNVTGPGGVPVKGS 140
>gi|386771001|ref|NP_001246730.1| ypsilon schachtel, isoform B [Drosophila melanogaster]
gi|383291886|gb|AFH04401.1| ypsilon schachtel, isoform B [Drosophila melanogaster]
Length = 340
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ K G+GFI R D +ED+FVH+S+I + NPKK +S+G GE+V+F++ +G+K
Sbjct: 62 VTGTVKWFNVKSGYGFINRNDTREDVFVHQSAIARNNPKKAVRSVGDGEVVEFDVVIGEK 121
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G PV+G+
Sbjct: 122 GNEAANVTGPSGEPVRGS 139
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 61/78 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ K G+GFI R D +ED+FVH+S+I + NPKK +S+G GE+V+F++ +G+K
Sbjct: 62 VTGTVKWFNVKSGYGFINRNDTREDVFVHQSAIARNNPKKAVRSVGDGEVVEFDVVIGEK 121
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G PV+G+
Sbjct: 122 GNEAANVTGPSGEPVRGS 139
>gi|405950240|gb|EKC18239.1| Y-box factor-like protein, partial [Crassostrea gigas]
Length = 251
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 61/83 (73%)
Query: 4 FEIHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
F + + G VK+++ K G+GFI R D KED+FVH+++I+K NPKK+ +S+G GE V+F++
Sbjct: 1 FLANKITGTVKWFNVKSGYGFINRDDTKEDVFVHQTAIIKNNPKKYLRSVGDGEAVEFDV 60
Query: 64 GVGKKDIEAINVTGPNGIPVQGA 86
G+K EA NVTGP G VQG+
Sbjct: 61 VEGEKGNEAANVTGPEGAHVQGS 83
Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 60/81 (74%)
Query: 107 VHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGV 166
+ + G VK+++ K G+GFI R D KED+FVH+++I+K NPKK+ +S+G GE V+F++
Sbjct: 3 ANKITGTVKWFNVKSGYGFINRDDTKEDVFVHQTAIIKNNPKKYLRSVGDGEAVEFDVVE 62
Query: 167 GKKDIEAINVTGPNGIPVQGA 187
G+K EA NVTGP G VQG+
Sbjct: 63 GEKGNEAANVTGPEGAHVQGS 83
>gi|291394002|ref|XP_002713355.1| PREDICTED: DNA-binding protein B-like [Oryctolagus cuniculus]
Length = 320
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 58/78 (74%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ S+G GE V+F++ G+K
Sbjct: 55 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLGSVGDGETVEFDVVEGEK 114
Query: 69 DIEAINVTGPNGIPVQGA 86
E NVTGP G+PVQG+
Sbjct: 115 GAEVANVTGPGGVPVQGS 132
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 58/78 (74%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ S+G GE V+F++ G+K
Sbjct: 55 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLGSVGDGETVEFDVVEGEK 114
Query: 170 DIEAINVTGPNGIPVQGA 187
E NVTGP G+PVQG+
Sbjct: 115 GAEVANVTGPGGVPVQGS 132
>gi|379067732|gb|AFC90219.1| cold shock domain protein [Azumapecten farreri]
Length = 308
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 59/78 (75%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ K G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 33 VTGTVKWFNVKSGYGFINRDDTKEDVFVHQTAITKNNPRKYLRSVGDGEKVEFDVVEGEK 92
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G PVQG+
Sbjct: 93 GNEASNVTGPEGNPVQGS 110
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 59/78 (75%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ K G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 33 VTGTVKWFNVKSGYGFINRDDTKEDVFVHQTAITKNNPRKYLRSVGDGEKVEFDVVEGEK 92
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G PVQG+
Sbjct: 93 GNEASNVTGPEGNPVQGS 110
>gi|348514604|ref|XP_003444830.1| PREDICTED: B box-binding protein-like [Oreochromis niloticus]
Length = 321
Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 59/78 (75%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 40 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 99
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+ VQG+
Sbjct: 100 GAEAANVTGPGGVAVQGS 117
Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 59/78 (75%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 40 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 99
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+ VQG+
Sbjct: 100 GAEAANVTGPGGVAVQGS 117
>gi|334349550|ref|XP_003342217.1| PREDICTED: y-box-binding protein 2-like [Monodelphis domestica]
Length = 345
Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 65/90 (72%), Gaps = 1/90 (1%)
Query: 99 RNDSFFPAVHT-VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLG 157
R+ + P + T V G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +S+G G
Sbjct: 69 RSQADKPVLATQVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDG 128
Query: 158 EIVDFNIGVGKKDIEAINVTGPNGIPVQGA 187
E V+F++ G+K EA NVTGP IPV+G+
Sbjct: 129 ETVEFDVVEGEKSAEAANVTGPGEIPVKGS 158
Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 59/78 (75%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +S+G GE V+F++ G+K
Sbjct: 81 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEK 140
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP IPV+G+
Sbjct: 141 SAEAANVTGPGEIPVKGS 158
>gi|47214045|emb|CAG00703.1| unnamed protein product [Tetraodon nigroviridis]
Length = 134
Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 61/82 (74%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V+G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +S+G GE+V+F++ K
Sbjct: 8 VQGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGELVEFDVIEAAK 67
Query: 170 DIEAINVTGPNGIPVQGAPKVP 191
EA NVTGP G+PV+G+ P
Sbjct: 68 GSEAANVTGPGGVPVKGSRYAP 89
Score = 89.0 bits (219), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V+G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +S+G GE+V+F++ K
Sbjct: 8 VQGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGELVEFDVIEAAK 67
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PV+G+
Sbjct: 68 GSEAANVTGPGGVPVKGS 85
>gi|410899410|ref|XP_003963190.1| PREDICTED: nuclease-sensitive element-binding protein 1 isoform 1
[Takifugu rubripes]
Length = 298
Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 59/78 (75%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 39 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 98
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+ VQG+
Sbjct: 99 GAEAANVTGPGGVAVQGS 116
Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 59/78 (75%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 39 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 98
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+ VQG+
Sbjct: 99 GAEAANVTGPGGVAVQGS 116
>gi|410899414|ref|XP_003963192.1| PREDICTED: nuclease-sensitive element-binding protein 1 isoform 3
[Takifugu rubripes]
Length = 292
Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 59/78 (75%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 39 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 98
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+ VQG+
Sbjct: 99 GAEAANVTGPGGVAVQGS 116
Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 59/78 (75%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 39 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 98
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+ VQG+
Sbjct: 99 GAEAANVTGPGGVAVQGS 116
>gi|194131800|gb|ACF33224.1| Y-box protein Lyb3 [Lethenteron camtschaticum]
Length = 171
Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 64/91 (70%), Gaps = 3/91 (3%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ K G+GFI R D KED+F+H+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 63 VLGTVKWFNVKNGYGFINRNDTKEDVFIHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 122
Query: 69 DIEAINVTGPNGIPVQGAPKSSSETVSGTYR 99
EA NVTGP+G VQG+ ++ G YR
Sbjct: 123 GAEAANVTGPDGAAVQGSRYAADR---GRYR 150
Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 59/78 (75%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ K G+GFI R D KED+F+H+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 63 VLGTVKWFNVKNGYGFINRNDTKEDVFIHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 122
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G VQG+
Sbjct: 123 GAEAANVTGPDGAAVQGS 140
>gi|111182511|gb|ABH07676.1| cold-shock domain protein [Scophthalmus maximus]
Length = 297
Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 59/78 (75%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 39 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 98
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+ VQG+
Sbjct: 99 GAEAANVTGPGGVAVQGS 116
Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 59/78 (75%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 39 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 98
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+ VQG+
Sbjct: 99 GAEAANVTGPGGVAVQGS 116
>gi|410899412|ref|XP_003963191.1| PREDICTED: nuclease-sensitive element-binding protein 1 isoform 2
[Takifugu rubripes]
Length = 319
Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 59/78 (75%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 39 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 98
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+ VQG+
Sbjct: 99 GAEAANVTGPGGVAVQGS 116
Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 59/78 (75%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 39 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 98
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+ VQG+
Sbjct: 99 GAEAANVTGPGGVAVQGS 116
>gi|47220428|emb|CAG03208.1| unnamed protein product [Tetraodon nigroviridis]
Length = 298
Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 59/78 (75%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 39 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 98
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+ VQG+
Sbjct: 99 GAEAANVTGPGGVAVQGS 116
Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 59/78 (75%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 39 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 98
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+ VQG+
Sbjct: 99 GAEAANVTGPGGVAVQGS 116
>gi|61217666|sp|Q9Z2C8.1|YBOX2_MOUSE RecName: Full=Y-box-binding protein 2; AltName: Full=FRGY2 homolog;
AltName: Full=Germ cell-specific Y-box-binding protein
gi|4071321|gb|AAC98673.1| Y-box protein MSY2 [Mus musculus]
Length = 360
Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 59/78 (75%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +S+G GE V+F++ G+K
Sbjct: 96 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEK 155
Query: 69 DIEAINVTGPNGIPVQGA 86
A NVTGP G+PV+G+
Sbjct: 156 GARAANVTGPGGVPVKGS 173
Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 59/78 (75%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +S+G GE V+F++ G+K
Sbjct: 96 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEK 155
Query: 170 DIEAINVTGPNGIPVQGA 187
A NVTGP G+PV+G+
Sbjct: 156 GARAANVTGPGGVPVKGS 173
>gi|195428579|ref|XP_002062350.1| GK16710 [Drosophila willistoni]
gi|194158435|gb|EDW73336.1| GK16710 [Drosophila willistoni]
Length = 344
Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ K G+GFI R D KED+FVH+S+I + NPKK +S+G GE+V+F++ +G+K
Sbjct: 47 VTGTVKWFNVKSGYGFINRNDTKEDVFVHQSAIARNNPKKAVRSVGDGEVVEFDVVIGEK 106
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G PV+G+
Sbjct: 107 GNEAANVTGPLGEPVRGS 124
Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ K G+GFI R D KED+FVH+S+I + NPKK +S+G GE+V+F++ +G+K
Sbjct: 47 VTGTVKWFNVKSGYGFINRNDTKEDVFVHQSAIARNNPKKAVRSVGDGEVVEFDVVIGEK 106
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G PV+G+
Sbjct: 107 GNEAANVTGPLGEPVRGS 124
>gi|324511297|gb|ADY44709.1| Y-box factor [Ascaris suum]
Length = 294
Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 58/78 (74%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
++G VK+++ K G+GFI R D EDIFVH++++ K NP K+ +SLG GE V+F++ G+K
Sbjct: 38 IQGTVKWFNVKNGYGFINRADTGEDIFVHQTAVTKNNPNKYLRSLGDGEKVEFDVVEGQK 97
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G V+G+
Sbjct: 98 GPEAANVTGPDGTNVEGS 115
Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 58/78 (74%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
++G VK+++ K G+GFI R D EDIFVH++++ K NP K+ +SLG GE V+F++ G+K
Sbjct: 38 IQGTVKWFNVKNGYGFINRADTGEDIFVHQTAVTKNNPNKYLRSLGDGEKVEFDVVEGQK 97
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G V+G+
Sbjct: 98 GPEAANVTGPDGTNVEGS 115
>gi|157278086|ref|NP_001098143.1| Y-box binding protein [Oryzias latipes]
gi|27348122|dbj|BAC45236.1| Y-box binding protein [Oryzias latipes]
Length = 306
Score = 89.4 bits (220), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 59/78 (75%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 41 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 100
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+ VQG+
Sbjct: 101 GAEAANVTGPGGVAVQGS 118
Score = 89.4 bits (220), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 59/78 (75%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 41 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 100
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+ VQG+
Sbjct: 101 GAEAANVTGPGGVAVQGS 118
>gi|194131842|gb|ACF33226.1| Y-box protein Lyb1 [Lethenteron camtschaticum]
Length = 331
Score = 89.4 bits (220), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 58/76 (76%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 70
G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE+V+F++ G+K
Sbjct: 27 GTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGEVVEFDVVEGEKGA 86
Query: 71 EAINVTGPNGIPVQGA 86
EA NVTGP G VQG+
Sbjct: 87 EAANVTGPGGTAVQGS 102
Score = 89.4 bits (220), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 58/76 (76%)
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 171
G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE+V+F++ G+K
Sbjct: 27 GTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGEVVEFDVVEGEKGA 86
Query: 172 EAINVTGPNGIPVQGA 187
EA NVTGP G VQG+
Sbjct: 87 EAANVTGPGGTAVQGS 102
>gi|4071323|gb|AAC98674.1| Y-box protein MSY2 isoform a [Mus musculus]
Length = 282
Score = 89.4 bits (220), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 59/78 (75%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +S+G GE V+F++ G+K
Sbjct: 18 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEK 77
Query: 69 DIEAINVTGPNGIPVQGA 86
A NVTGP G+PV+G+
Sbjct: 78 GARAANVTGPGGVPVKGS 95
Score = 89.4 bits (220), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 59/78 (75%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +S+G GE V+F++ G+K
Sbjct: 18 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEK 77
Query: 170 DIEAINVTGPNGIPVQGA 187
A NVTGP G+PV+G+
Sbjct: 78 GARAANVTGPGGVPVKGS 95
>gi|308510156|ref|XP_003117261.1| CRE-CEY-1 protein [Caenorhabditis remanei]
gi|308242175|gb|EFO86127.1| CRE-CEY-1 protein [Caenorhabditis remanei]
Length = 202
Score = 89.4 bits (220), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 57/78 (73%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V+G VK+++ K G+GFI R D EDIFVH+++I+ NP K+ +SLG E V F+I G K
Sbjct: 21 VKGTVKWFNVKNGYGFINRTDTNEDIFVHQTAIINNNPNKYLRSLGDNEEVLFDIVEGSK 80
Query: 69 DIEAINVTGPNGIPVQGA 86
+EA NVTGP+G PVQG+
Sbjct: 81 GLEASNVTGPDGGPVQGS 98
Score = 89.4 bits (220), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 57/78 (73%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V+G VK+++ K G+GFI R D EDIFVH+++I+ NP K+ +SLG E V F+I G K
Sbjct: 21 VKGTVKWFNVKNGYGFINRTDTNEDIFVHQTAIINNNPNKYLRSLGDNEEVLFDIVEGSK 80
Query: 170 DIEAINVTGPNGIPVQGA 187
+EA NVTGP+G PVQG+
Sbjct: 81 GLEASNVTGPDGGPVQGS 98
>gi|325297104|ref|NP_001191560.1| Y-box factor homolog [Aplysia californica]
gi|1175568|sp|P41824.1|YBOXH_APLCA RecName: Full=Y-box factor homolog; AltName: Full=APY1
gi|409419|gb|AAA60373.1| Y-Box factor [Aplysia californica]
Length = 253
Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 59/81 (72%)
Query: 107 VHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGV 166
V G VK+++ K G+GFI R D KED+FVH+++IVK NP+K+ +S+G GE V+F++
Sbjct: 30 ASQVSGTVKWFNVKSGYGFINRDDTKEDVFVHQTAIVKNNPRKYLRSVGDGEKVEFDVVE 89
Query: 167 GKKDIEAINVTGPNGIPVQGA 187
G+K EA NVTGP G VQG+
Sbjct: 90 GEKGNEAANVTGPEGSNVQGS 110
Score = 89.0 bits (219), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 59/78 (75%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ K G+GFI R D KED+FVH+++IVK NP+K+ +S+G GE V+F++ G+K
Sbjct: 33 VSGTVKWFNVKSGYGFINRDDTKEDVFVHQTAIVKNNPRKYLRSVGDGEKVEFDVVEGEK 92
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G VQG+
Sbjct: 93 GNEAANVTGPEGSNVQGS 110
>gi|112982792|ref|NP_001036897.1| Y-box protein [Bombyx mori]
gi|49532669|dbj|BAD26606.1| Y-box protein [Bombyx mori]
Length = 259
Score = 89.0 bits (219), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 44/97 (45%), Positives = 66/97 (68%), Gaps = 3/97 (3%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ K G+GFI R D KED+FVH+++I + NP+K +S+G GE V+F + G+K
Sbjct: 38 VSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEK 97
Query: 69 DIEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFP 105
EA VTGP G PV+G+P +++ G +R +FP
Sbjct: 98 GFEAAGVTGPGGEPVKGSP-YAADKRRGYHR--QYFP 131
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 57/82 (69%)
Query: 107 VHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGV 166
V G VK+++ K G+GFI R D KED+FVH+++I + NP+K +S+G GE V+F +
Sbjct: 35 AEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVA 94
Query: 167 GKKDIEAINVTGPNGIPVQGAP 188
G+K EA VTGP G PV+G+P
Sbjct: 95 GEKGFEAAGVTGPGGEPVKGSP 116
>gi|341889079|gb|EGT45014.1| CBN-CEY-1 protein [Caenorhabditis brenneri]
Length = 205
Score = 89.0 bits (219), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 57/78 (73%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V+G VK+++ K G+GFI R D EDIFVH+++I+ NP K+ +SLG E V F+I G K
Sbjct: 21 VKGTVKWFNVKNGYGFINRTDTNEDIFVHQTAIINNNPNKYLRSLGDNEEVLFDIVEGSK 80
Query: 69 DIEAINVTGPNGIPVQGA 86
+EA NVTGP+G PVQG+
Sbjct: 81 GLEASNVTGPDGGPVQGS 98
Score = 89.0 bits (219), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 57/78 (73%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V+G VK+++ K G+GFI R D EDIFVH+++I+ NP K+ +SLG E V F+I G K
Sbjct: 21 VKGTVKWFNVKNGYGFINRTDTNEDIFVHQTAIINNNPNKYLRSLGDNEEVLFDIVEGSK 80
Query: 170 DIEAINVTGPNGIPVQGA 187
+EA NVTGP+G PVQG+
Sbjct: 81 GLEASNVTGPDGGPVQGS 98
>gi|14270385|emb|CAC39432.1| cold-shock domain protein [Takifugu rubripes]
Length = 263
Score = 89.0 bits (219), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 59/78 (75%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 22 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 81
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+ VQG+
Sbjct: 82 GAEAANVTGPGGVAVQGS 99
Score = 89.0 bits (219), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 59/78 (75%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 22 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 81
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+ VQG+
Sbjct: 82 GAEAANVTGPGGVAVQGS 99
>gi|313214830|emb|CBY41075.1| unnamed protein product [Oikopleura dioica]
gi|313231198|emb|CBY08313.1| unnamed protein product [Oikopleura dioica]
Length = 292
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 60/82 (73%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D ED+FVH+++IVK NPKKF +S+G GE V F++ G+K
Sbjct: 41 VTGSVKWFNVRNGYGFIHRDDTDEDVFVHQTAIVKNNPKKFLRSVGDGEKVVFDVVEGQK 100
Query: 170 DIEAINVTGPNGIPVQGAPKVP 191
EA NVTGP+G PV+G+ P
Sbjct: 101 GNEAANVTGPDGNPVEGSKYAP 122
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 59/78 (75%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D ED+FVH+++IVK NPKKF +S+G GE V F++ G+K
Sbjct: 41 VTGSVKWFNVRNGYGFIHRDDTDEDVFVHQTAIVKNNPKKFLRSVGDGEKVVFDVVEGQK 100
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G PV+G+
Sbjct: 101 GNEAANVTGPDGNPVEGS 118
>gi|123301101|dbj|BAF45318.1| Y-box protein [Bombyx mori]
Length = 272
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/97 (45%), Positives = 66/97 (68%), Gaps = 3/97 (3%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ K G+GFI R D KED+FVH+++I + NP+K +S+G GE V+F + G+K
Sbjct: 38 VSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEK 97
Query: 69 DIEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFP 105
EA VTGP G PV+G+P +++ G +R +FP
Sbjct: 98 GFEAAGVTGPGGEPVKGSP-YAADKRRGYHR--QYFP 131
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 57/82 (69%)
Query: 107 VHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGV 166
V G VK+++ K G+GFI R D KED+FVH+++I + NP+K +S+G GE V+F +
Sbjct: 35 AEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVA 94
Query: 167 GKKDIEAINVTGPNGIPVQGAP 188
G+K EA VTGP G PV+G+P
Sbjct: 95 GEKGFEAAGVTGPGGEPVKGSP 116
>gi|410048463|ref|XP_001134851.3| PREDICTED: nuclease-sensitive element-binding protein 1-like [Pan
troglodytes]
Length = 384
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 59/78 (75%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 120 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 179
Query: 69 DIEAINVTGPNGIPVQGA 86
+A NVTGP G+ VQG+
Sbjct: 180 GAKAANVTGPGGVAVQGS 197
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 59/78 (75%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 120 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 179
Query: 170 DIEAINVTGPNGIPVQGA 187
+A NVTGP G+ VQG+
Sbjct: 180 GAKAANVTGPGGVAVQGS 197
>gi|82802831|gb|ABB92461.1| rcNSEP1 [Pan troglodytes]
Length = 319
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 59/78 (75%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 55 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 114
Query: 69 DIEAINVTGPNGIPVQGA 86
+A NVTGP G+ VQG+
Sbjct: 115 GAKAANVTGPGGVAVQGS 132
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 59/78 (75%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 55 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 114
Query: 170 DIEAINVTGPNGIPVQGA 187
+A NVTGP G+ VQG+
Sbjct: 115 GAKAANVTGPGGVAVQGS 132
>gi|149898790|gb|ABR27857.1| predicted RNA-binding protein [Triatoma infestans]
Length = 300
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/79 (53%), Positives = 58/79 (73%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ K G+GFI R D ED+FVH+S+I+K NPKK +S+G GE V+F++ G+K
Sbjct: 55 VTGTVKWFNVKSGYGFINRKDTGEDVFVHQSAIIKNNPKKAVRSVGDGETVEFDVVAGEK 114
Query: 69 DIEAINVTGPNGIPVQGAP 87
EA NVTG NG V+G+P
Sbjct: 115 GNEAANVTGENGAAVKGSP 133
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/79 (53%), Positives = 58/79 (73%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ K G+GFI R D ED+FVH+S+I+K NPKK +S+G GE V+F++ G+K
Sbjct: 55 VTGTVKWFNVKSGYGFINRKDTGEDVFVHQSAIIKNNPKKAVRSVGDGETVEFDVVAGEK 114
Query: 170 DIEAINVTGPNGIPVQGAP 188
EA NVTG NG V+G+P
Sbjct: 115 GNEAANVTGENGAAVKGSP 133
>gi|51105064|gb|AAT97092.1| Y-box factor-like protein [Lymnaea stagnalis]
Length = 219
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ K G+GFI R D KED+FVH+++I+K NP+K+ +S+G GE V+F++ G+K
Sbjct: 32 VTGTVKWFNVKSGYGFINRDDTKEDVFVHQTAIIKNNPRKYLRSVGDGEKVEFDVVEGEK 91
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G VQG+
Sbjct: 92 GNEAANVTGPDGSNVQGS 109
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ K G+GFI R D KED+FVH+++I+K NP+K+ +S+G GE V+F++ G+K
Sbjct: 32 VTGTVKWFNVKSGYGFINRDDTKEDVFVHQTAIIKNNPRKYLRSVGDGEKVEFDVVEGEK 91
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G VQG+
Sbjct: 92 GNEAANVTGPDGSNVQGS 109
>gi|17533635|ref|NP_496366.1| Protein CEY-1 [Caenorhabditis elegans]
gi|3876637|emb|CAB04257.1| Protein CEY-1 [Caenorhabditis elegans]
Length = 208
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 57/78 (73%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V+G VK+++ K G+GFI R D EDIFVH+++I+ NP K+ +SLG E V F+I G K
Sbjct: 21 VKGTVKWFNVKNGYGFINRTDTNEDIFVHQTAIINNNPNKYLRSLGDNEEVMFDIVEGSK 80
Query: 69 DIEAINVTGPNGIPVQGA 86
+EA +VTGP+G PVQG+
Sbjct: 81 GLEAASVTGPDGGPVQGS 98
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 57/78 (73%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V+G VK+++ K G+GFI R D EDIFVH+++I+ NP K+ +SLG E V F+I G K
Sbjct: 21 VKGTVKWFNVKNGYGFINRTDTNEDIFVHQTAIINNNPNKYLRSLGDNEEVMFDIVEGSK 80
Query: 170 DIEAINVTGPNGIPVQGA 187
+EA +VTGP+G PVQG+
Sbjct: 81 GLEAASVTGPDGGPVQGS 98
>gi|72008824|ref|XP_785816.1| PREDICTED: uncharacterized protein LOC580680 [Strongylocentrotus
purpuratus]
Length = 326
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 58/78 (74%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ K G+GFI R D KED+FVH+S+IV+ NP+K+ +S+G GE+V+F++ G K
Sbjct: 24 VSGTVKWFNVKNGYGFINRDDTKEDVFVHQSAIVRNNPRKYQRSVGDGEVVEFDVVEGTK 83
Query: 69 DIEAINVTGPNGIPVQGA 86
EA VTGP G PV G+
Sbjct: 84 GNEAARVTGPEGAPVVGS 101
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 58/78 (74%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ K G+GFI R D KED+FVH+S+IV+ NP+K+ +S+G GE+V+F++ G K
Sbjct: 24 VSGTVKWFNVKNGYGFINRDDTKEDVFVHQSAIVRNNPRKYQRSVGDGEVVEFDVVEGTK 83
Query: 170 DIEAINVTGPNGIPVQGA 187
EA VTGP G PV G+
Sbjct: 84 GNEAARVTGPEGAPVVGS 101
>gi|393907739|gb|EJD74761.1| pseudouridine synthase, variant 2 [Loa loa]
Length = 270
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 63/86 (73%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
++G VK+++ K G+GFI R D +DIFVH++++ K NP K+ +SLG GE V+F++ G+K
Sbjct: 37 IQGTVKWFNVKNGYGFINRADTGDDIFVHQTAVTKNNPNKYLRSLGDGEKVEFDVVEGQK 96
Query: 69 DIEAINVTGPNGIPVQGAPKSSSETV 94
EA NVTGPNG V+G+ ++ ++V
Sbjct: 97 GPEAANVTGPNGGNVEGSRYAADKSV 122
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 58/78 (74%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
++G VK+++ K G+GFI R D +DIFVH++++ K NP K+ +SLG GE V+F++ G+K
Sbjct: 37 IQGTVKWFNVKNGYGFINRADTGDDIFVHQTAVTKNNPNKYLRSLGDGEKVEFDVVEGQK 96
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGPNG V+G+
Sbjct: 97 GPEAANVTGPNGGNVEGS 114
>gi|402591201|gb|EJW85131.1| cold-shock DNA-binding domain-containing protein [Wuchereria
bancrofti]
Length = 270
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 58/78 (74%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
++G VK+++ K G+GFI R D +DIFVH++++ K NP K+ +SLG GE V+F++ G+K
Sbjct: 37 IQGTVKWFNVKNGYGFINRADTGDDIFVHQTAVTKNNPNKYLRSLGDGEKVEFDVVEGQK 96
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGPNG V+G+
Sbjct: 97 GPEAANVTGPNGSNVEGS 114
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 58/78 (74%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
++G VK+++ K G+GFI R D +DIFVH++++ K NP K+ +SLG GE V+F++ G+K
Sbjct: 37 IQGTVKWFNVKNGYGFINRADTGDDIFVHQTAVTKNNPNKYLRSLGDGEKVEFDVVEGQK 96
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGPNG V+G+
Sbjct: 97 GPEAANVTGPNGSNVEGS 114
>gi|170596965|ref|XP_001902961.1| 'Cold-shock' DNA-binding domain containing protein [Brugia malayi]
gi|158589027|gb|EDP28189.1| 'Cold-shock' DNA-binding domain containing protein [Brugia malayi]
Length = 290
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 58/78 (74%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
++G VK+++ K G+GFI R D +DIFVH++++ K NP K+ +SLG GE V+F++ G+K
Sbjct: 58 IQGTVKWFNVKNGYGFINRADTGDDIFVHQTAVTKNNPNKYLRSLGDGEKVEFDVVEGQK 117
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGPNG V+G+
Sbjct: 118 GPEAANVTGPNGSNVEGS 135
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 58/78 (74%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
++G VK+++ K G+GFI R D +DIFVH++++ K NP K+ +SLG GE V+F++ G+K
Sbjct: 58 IQGTVKWFNVKNGYGFINRADTGDDIFVHQTAVTKNNPNKYLRSLGDGEKVEFDVVEGQK 117
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGPNG V+G+
Sbjct: 118 GPEAANVTGPNGSNVEGS 135
>gi|393907738|gb|EJD74760.1| pseudouridine synthase, variant 1 [Loa loa]
Length = 313
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 63/86 (73%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
++G VK+++ K G+GFI R D +DIFVH++++ K NP K+ +SLG GE V+F++ G+K
Sbjct: 80 IQGTVKWFNVKNGYGFINRADTGDDIFVHQTAVTKNNPNKYLRSLGDGEKVEFDVVEGQK 139
Query: 69 DIEAINVTGPNGIPVQGAPKSSSETV 94
EA NVTGPNG V+G+ ++ ++V
Sbjct: 140 GPEAANVTGPNGGNVEGSRYAADKSV 165
Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 58/78 (74%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
++G VK+++ K G+GFI R D +DIFVH++++ K NP K+ +SLG GE V+F++ G+K
Sbjct: 80 IQGTVKWFNVKNGYGFINRADTGDDIFVHQTAVTKNNPNKYLRSLGDGEKVEFDVVEGQK 139
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGPNG V+G+
Sbjct: 140 GPEAANVTGPNGGNVEGS 157
>gi|393907737|gb|EJD74759.1| pseudouridine synthase [Loa loa]
Length = 315
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 63/86 (73%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
++G VK+++ K G+GFI R D +DIFVH++++ K NP K+ +SLG GE V+F++ G+K
Sbjct: 80 IQGTVKWFNVKNGYGFINRADTGDDIFVHQTAVTKNNPNKYLRSLGDGEKVEFDVVEGQK 139
Query: 69 DIEAINVTGPNGIPVQGAPKSSSETV 94
EA NVTGPNG V+G+ ++ ++V
Sbjct: 140 GPEAANVTGPNGGNVEGSRYAADKSV 165
Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 58/78 (74%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
++G VK+++ K G+GFI R D +DIFVH++++ K NP K+ +SLG GE V+F++ G+K
Sbjct: 80 IQGTVKWFNVKNGYGFINRADTGDDIFVHQTAVTKNNPNKYLRSLGDGEKVEFDVVEGQK 139
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGPNG V+G+
Sbjct: 140 GPEAANVTGPNGGNVEGS 157
>gi|82802829|gb|ABB92460.1| rcNSEP1 [Homo sapiens]
Length = 319
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 58/78 (74%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH ++ K NP+K+ +S+G GE V+F++ G+K
Sbjct: 55 VLGTVKWFNVRNGYGFIHRNDTKEDVFVHHTAXKKNNPRKYLRSVGDGEXVEFDVVEGEK 114
Query: 69 DIEAINVTGPNGIPVQGA 86
+A NVTGP G+PVQG+
Sbjct: 115 GAKAANVTGPGGVPVQGS 132
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 58/78 (74%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH ++ K NP+K+ +S+G GE V+F++ G+K
Sbjct: 55 VLGTVKWFNVRNGYGFIHRNDTKEDVFVHHTAXKKNNPRKYLRSVGDGEXVEFDVVEGEK 114
Query: 170 DIEAINVTGPNGIPVQGA 187
+A NVTGP G+PVQG+
Sbjct: 115 GAKAANVTGPGGVPVQGS 132
>gi|363894830|gb|AEW42978.1| putative Y-Box binding protein 1 [Haliotis diversicolor]
Length = 280
Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 59/78 (75%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ K G+GFI R D KED+FVH+++IVK NPKK+ +S+G GE V+F++ G+K
Sbjct: 24 VTGTVKWFNVKSGYGFINRDDTKEDVFVHQTAIVKNNPKKYLRSVGDGEKVEFDVVEGEK 83
Query: 69 DIEAINVTGPNGIPVQGA 86
EA +VTGP G VQG+
Sbjct: 84 GNEAASVTGPGGTFVQGS 101
Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 59/78 (75%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ K G+GFI R D KED+FVH+++IVK NPKK+ +S+G GE V+F++ G+K
Sbjct: 24 VTGTVKWFNVKSGYGFINRDDTKEDVFVHQTAIVKNNPKKYLRSVGDGEKVEFDVVEGEK 83
Query: 170 DIEAINVTGPNGIPVQGA 187
EA +VTGP G VQG+
Sbjct: 84 GNEAASVTGPGGTFVQGS 101
>gi|149052644|gb|EDM04461.1| rCG63497 [Rattus norvegicus]
Length = 322
Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 57/78 (73%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI D +ED+FVH+++I K P+K+ +S+G GE V+F + G+K
Sbjct: 57 VLGTVKWFNVRNGYGFINSNDTREDVFVHQTAIKKNKPRKYLRSVGDGETVEFEVVEGEK 116
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 117 GAEAANVTGPGGVPVQGS 134
Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 57/78 (73%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI D +ED+FVH+++I K P+K+ +S+G GE V+F + G+K
Sbjct: 57 VLGTVKWFNVRNGYGFINSNDTREDVFVHQTAIKKNKPRKYLRSVGDGETVEFEVVEGEK 116
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 117 GAEAANVTGPGGVPVQGS 134
>gi|148681705|gb|EDL13652.1| mCG50433 [Mus musculus]
Length = 305
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 57/78 (73%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G V++ + + G+ FI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 58 VLGTVRWINVRNGYSFINRNDTKEDVFVHQTAIRKNNPRKYLRSVGDGETVEFDVVEGEK 117
Query: 69 DIEAINVTGPNGIPVQGA 86
EA VTGP G+PVQG+
Sbjct: 118 GAEAAKVTGPGGVPVQGS 135
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 57/78 (73%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G V++ + + G+ FI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 58 VLGTVRWINVRNGYSFINRNDTKEDVFVHQTAIRKNNPRKYLRSVGDGETVEFDVVEGEK 117
Query: 170 DIEAINVTGPNGIPVQGA 187
EA VTGP G+PVQG+
Sbjct: 118 GAEAAKVTGPGGVPVQGS 135
>gi|268532128|ref|XP_002631192.1| C. briggsae CBR-CEY-1 protein [Caenorhabditis briggsae]
Length = 202
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 57/78 (73%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V+G VK+++ K G+GFI R D EDIFVH+++I+ NP K+ +SLG E V F+I G K
Sbjct: 21 VKGTVKWFNVKNGYGFINRTDTNEDIFVHQTAIINNNPNKYLRSLGDNEEVLFDIVEGSK 80
Query: 69 DIEAINVTGPNGIPVQGA 86
+EA +VTGP+G PVQG+
Sbjct: 81 GLEASSVTGPDGGPVQGS 98
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 57/78 (73%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V+G VK+++ K G+GFI R D EDIFVH+++I+ NP K+ +SLG E V F+I G K
Sbjct: 21 VKGTVKWFNVKNGYGFINRTDTNEDIFVHQTAIINNNPNKYLRSLGDNEEVLFDIVEGSK 80
Query: 170 DIEAINVTGPNGIPVQGA 187
+EA +VTGP+G PVQG+
Sbjct: 81 GLEASSVTGPDGGPVQGS 98
>gi|349804361|gb|AEQ17653.1| putative y box binding protein 1 [Hymenochirus curtipes]
Length = 289
Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 59/78 (75%), Gaps = 1/78 (1%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KE +FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 25 VLGTVKWFNVRNGYGFINRDDTKE-VFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 83
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 84 GAEAANVTGPGGVPVQGS 101
Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 59/78 (75%), Gaps = 1/78 (1%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KE +FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 25 VLGTVKWFNVRNGYGFINRDDTKE-VFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 83
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 84 GAEAANVTGPGGVPVQGS 101
>gi|301778155|ref|XP_002924500.1| PREDICTED: hypothetical protein LOC100473556 [Ailuropoda
melanoleuca]
Length = 199
Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 55/74 (74%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +S+G GE V+F++ G+K
Sbjct: 47 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEK 106
Query: 69 DIEAINVTGPNGIP 82
EA NVTGP G P
Sbjct: 107 GAEAANVTGPGGAP 120
Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 55/74 (74%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +S+G GE V+F++ G+K
Sbjct: 47 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEK 106
Query: 170 DIEAINVTGPNGIP 183
EA NVTGP G P
Sbjct: 107 GAEAANVTGPGGAP 120
>gi|1083796|pir||S48055 RYB-a protein - rat
Length = 291
Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 59/78 (75%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K N K+ +S+G GE V+F++ G+K
Sbjct: 82 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNHVKYLRSVGDGETVEFDVVEGEK 141
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G+PV+G+
Sbjct: 142 GAEAANVTGPDGVPVEGS 159
Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 59/78 (75%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K N K+ +S+G GE V+F++ G+K
Sbjct: 82 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNHVKYLRSVGDGETVEFDVVEGEK 141
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G+PV+G+
Sbjct: 142 GAEAANVTGPDGVPVEGS 159
>gi|196007122|ref|XP_002113427.1| hypothetical protein TRIADDRAFT_64023 [Trichoplax adhaerens]
gi|190583831|gb|EDV23901.1| hypothetical protein TRIADDRAFT_64023 [Trichoplax adhaerens]
Length = 279
Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 59/81 (72%)
Query: 107 VHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGV 166
+ V G VK+++ KRG+GFI R D ED+FVH+++I NPKK+ +S+G E+V+F++
Sbjct: 26 ANKVSGKVKWFNVKRGYGFIHRDDTGEDVFVHQTAIQANNPKKYLRSVGDEEVVEFDVLS 85
Query: 167 GKKDIEAINVTGPNGIPVQGA 187
G K +EA NVTGPNG V+G+
Sbjct: 86 GPKGLEAANVTGPNGTAVKGS 106
Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 58/78 (74%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ KRG+GFI R D ED+FVH+++I NPKK+ +S+G E+V+F++ G K
Sbjct: 29 VSGKVKWFNVKRGYGFIHRDDTGEDVFVHQTAIQANNPKKYLRSVGDEEVVEFDVLSGPK 88
Query: 69 DIEAINVTGPNGIPVQGA 86
+EA NVTGPNG V+G+
Sbjct: 89 GLEAANVTGPNGTAVKGS 106
>gi|505133|dbj|BAA05907.1| RYB-a [Rattus norvegicus]
Length = 291
Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 59/78 (75%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K N K+ +S+G GE V+F++ G+K
Sbjct: 82 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNHVKYLRSVGDGETVEFDVVEGEK 141
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G+PV+G+
Sbjct: 142 GAEAANVTGPDGVPVEGS 159
Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 59/78 (75%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K N K+ +S+G GE V+F++ G+K
Sbjct: 82 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNHVKYLRSVGDGETVEFDVVEGEK 141
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G+PV+G+
Sbjct: 142 GAEAANVTGPDGVPVEGS 159
>gi|114615287|ref|XP_510011.2| PREDICTED: nuclease-sensitive element-binding protein 1-like [Pan
troglodytes]
Length = 379
Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 59/78 (75%), Gaps = 1/78 (1%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FV +++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 115 VLGTVKWFNVRNGYGFINRNDTKEDVFVPQTAI-KNNPRKYLRSVGDGETVEFDVVEGEK 173
Query: 69 DIEAINVTGPNGIPVQGA 86
D EA NVT P G+PVQG+
Sbjct: 174 DAEAANVTDPGGVPVQGS 191
Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 59/78 (75%), Gaps = 1/78 (1%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FV +++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 115 VLGTVKWFNVRNGYGFINRNDTKEDVFVPQTAI-KNNPRKYLRSVGDGETVEFDVVEGEK 173
Query: 170 DIEAINVTGPNGIPVQGA 187
D EA NVT P G+PVQG+
Sbjct: 174 DAEAANVTDPGGVPVQGS 191
>gi|300119946|gb|ADJ67998.1| Y-box protein [Samia ricini]
Length = 264
Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 61/87 (70%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ K G+GFI R D KED+FVH+++I++ NP+K +S+G GE V+F + G+K
Sbjct: 37 VSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEK 96
Query: 69 DIEAINVTGPNGIPVQGAPKSSSETVS 95
EA VTGP G V+G+P ++ + S
Sbjct: 97 GYEAARVTGPGGESVKGSPYAADKRRS 123
Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 39/79 (49%), Positives = 57/79 (72%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ K G+GFI R D KED+FVH+++I++ NP+K +S+G GE V+F + G+K
Sbjct: 37 VSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEK 96
Query: 170 DIEAINVTGPNGIPVQGAP 188
EA VTGP G V+G+P
Sbjct: 97 GYEAARVTGPGGESVKGSP 115
>gi|281352187|gb|EFB27771.1| hypothetical protein PANDA_013847 [Ailuropoda melanoleuca]
Length = 163
Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 55/74 (74%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +S+G GE V+F++ G+K
Sbjct: 47 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEK 106
Query: 69 DIEAINVTGPNGIP 82
EA NVTGP G P
Sbjct: 107 GAEAANVTGPGGAP 120
Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 55/74 (74%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +S+G GE V+F++ G+K
Sbjct: 47 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEK 106
Query: 170 DIEAINVTGPNGIP 183
EA NVTGP G P
Sbjct: 107 GAEAANVTGPGGAP 120
>gi|357619314|gb|EHJ71938.1| Y-box protein [Danaus plexippus]
Length = 272
Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 56/82 (68%)
Query: 107 VHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGV 166
V G VK+++ K G+GFI R D KED+FVH+++I + NP+K +S+G GE V+F +
Sbjct: 37 AEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVA 96
Query: 167 GKKDIEAINVTGPNGIPVQGAP 188
G+K EA VTGP G P +G+P
Sbjct: 97 GEKGYEAAGVTGPGGEPGKGSP 118
Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 58/85 (68%)
Query: 6 IHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGV 65
V G VK+++ K G+GFI R D KED+FVH+++I + NP+K +S+G GE V+F +
Sbjct: 37 AEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVA 96
Query: 66 GKKDIEAINVTGPNGIPVQGAPKSS 90
G+K EA VTGP G P +G+P ++
Sbjct: 97 GEKGYEAAGVTGPGGEPGKGSPYAA 121
>gi|395730664|ref|XP_003780455.1| PREDICTED: LOW QUALITY PROTEIN: nuclease-sensitive element-binding
protein 1 [Pongo abelii]
Length = 409
Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 39/79 (49%), Positives = 59/79 (74%), Gaps = 1/79 (1%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFV-HKSSIVKMNPKKFFQSLGLGEIVDFNIGVGK 67
V G VK+++ + G+GFI R D KED+FV H+++I K P+++ +S+G GE V+F++ G+
Sbjct: 143 VLGTVKWFNVRNGYGFINRNDTKEDVFVVHQTAIKKNXPRRYLRSVGDGETVEFDVVEGE 202
Query: 68 KDIEAINVTGPNGIPVQGA 86
K EA NVTGP G+PVQG+
Sbjct: 203 KGAEAANVTGPGGVPVQGS 221
Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 39/79 (49%), Positives = 59/79 (74%), Gaps = 1/79 (1%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFV-HKSSIVKMNPKKFFQSLGLGEIVDFNIGVGK 168
V G VK+++ + G+GFI R D KED+FV H+++I K P+++ +S+G GE V+F++ G+
Sbjct: 143 VLGTVKWFNVRNGYGFINRNDTKEDVFVVHQTAIKKNXPRRYLRSVGDGETVEFDVVEGE 202
Query: 169 KDIEAINVTGPNGIPVQGA 187
K EA NVTGP G+PVQG+
Sbjct: 203 KGAEAANVTGPGGVPVQGS 221
>gi|2739396|gb|AAB94634.1| Y-box protein [Drosophila melanogaster]
Length = 359
Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%), Gaps = 1/78 (1%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ K G+GFI R D +ED+FVH+S+I NPKK +S+G GE+V+F++ +G+K
Sbjct: 63 VTGTVKWFNVKSGYGFINRNDTREDVFVHQSAIAN-NPKKAVRSVGDGEVVEFDVVIGEK 121
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G PV+G+
Sbjct: 122 GNEAANVTGPSGEPVRGS 139
Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%), Gaps = 1/78 (1%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ K G+GFI R D +ED+FVH+S+I NPKK +S+G GE+V+F++ +G+K
Sbjct: 63 VTGTVKWFNVKSGYGFINRNDTREDVFVHQSAIAN-NPKKAVRSVGDGEVVEFDVVIGEK 121
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G PV+G+
Sbjct: 122 GNEAANVTGPSGEPVRGS 139
>gi|301170784|dbj|BAJ12006.1| y box protein [Samia cynthia walkeri]
Length = 139
Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 61/87 (70%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ K G+GFI R D KED+FVH+++I++ NP+K +S+G GE V+F + G+K
Sbjct: 13 VSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEK 72
Query: 69 DIEAINVTGPNGIPVQGAPKSSSETVS 95
EA VTGP G V+G+P ++ + S
Sbjct: 73 GYEAARVTGPGGESVKGSPYAADKRRS 99
Score = 85.5 bits (210), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 39/79 (49%), Positives = 57/79 (72%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ K G+GFI R D KED+FVH+++I++ NP+K +S+G GE V+F + G+K
Sbjct: 13 VSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEK 72
Query: 170 DIEAINVTGPNGIPVQGAP 188
EA VTGP G V+G+P
Sbjct: 73 GYEAARVTGPGGESVKGSP 91
>gi|312377865|gb|EFR24595.1| hypothetical protein AND_10704 [Anopheles darlingi]
Length = 428
Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 59/78 (75%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G+VK+++ K G+GFI R D ED+FVH+S+I + NPKK +S+G GE V+F++ +G+K
Sbjct: 91 VTGVVKWFNVKSGYGFINRGDTHEDVFVHQSAIARNNPKKAVRSVGDGEEVEFDVVIGEK 150
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G V+G+
Sbjct: 151 GNEAANVTGPSGEAVKGS 168
Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 59/78 (75%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G+VK+++ K G+GFI R D ED+FVH+S+I + NPKK +S+G GE V+F++ +G+K
Sbjct: 91 VTGVVKWFNVKSGYGFINRGDTHEDVFVHQSAIARNNPKKAVRSVGDGEEVEFDVVIGEK 150
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G V+G+
Sbjct: 151 GNEAANVTGPSGEAVKGS 168
>gi|443706563|gb|ELU02551.1| hypothetical protein CAPTEDRAFT_58131, partial [Capitella teleta]
Length = 89
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 57/78 (73%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G K+++ +RG+GFI R D +ED+FVH ++IVK +P K+ +S+G GE V+F++ +K
Sbjct: 11 VTGAAKWFNMRRGYGFINRDDTQEDVFVHHTAIVKNDPHKYLRSIGDGEKVEFDVMKTEK 70
Query: 69 DIEAINVTGPNGIPVQGA 86
+A NVTGP G PVQG+
Sbjct: 71 SNQAANVTGPEGEPVQGS 88
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 57/78 (73%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G K+++ +RG+GFI R D +ED+FVH ++IVK +P K+ +S+G GE V+F++ +K
Sbjct: 11 VTGAAKWFNMRRGYGFINRDDTQEDVFVHHTAIVKNDPHKYLRSIGDGEKVEFDVMKTEK 70
Query: 170 DIEAINVTGPNGIPVQGA 187
+A NVTGP G PVQG+
Sbjct: 71 SNQAANVTGPEGEPVQGS 88
>gi|432089943|gb|ELK23588.1| Nuclease-sensitive element-binding protein 1 [Myotis davidii]
Length = 229
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 58/78 (74%), Gaps = 1/78 (1%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D +ED+FVH+++I K NP+K+ +S+G GE V F++ G+K
Sbjct: 51 VWGTVKWFNVRNGYGFINRNDTEEDVFVHQTAI-KNNPRKYLRSIGDGETVAFDVVEGEK 109
Query: 69 DIEAINVTGPNGIPVQGA 86
A NVTGP G+PVQG+
Sbjct: 110 GAGAANVTGPGGVPVQGS 127
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 58/78 (74%), Gaps = 1/78 (1%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D +ED+FVH+++I K NP+K+ +S+G GE V F++ G+K
Sbjct: 51 VWGTVKWFNVRNGYGFINRNDTEEDVFVHQTAI-KNNPRKYLRSIGDGETVAFDVVEGEK 109
Query: 170 DIEAINVTGPNGIPVQGA 187
A NVTGP G+PVQG+
Sbjct: 110 GAGAANVTGPGGVPVQGS 127
>gi|443719190|gb|ELU09464.1| hypothetical protein CAPTEDRAFT_115648 [Capitella teleta]
Length = 124
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 62/90 (68%)
Query: 1 MTKFEIHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVD 60
M K V G+VK+++ +RG+GFI R D +ED+FVH ++IVK NP K+ +S+G GE V+
Sbjct: 1 MKKVISSKVTGVVKWFNVRRGYGFINRDDMQEDVFVHHTAIVKNNPHKYLRSVGDGEKVE 60
Query: 61 FNIGVGKKDIEAINVTGPNGIPVQGAPKSS 90
F++ +K +A NVTGP G VQG+ ++
Sbjct: 61 FDVVKAEKGNQAANVTGPEGESVQGSKHAA 90
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 58/78 (74%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G+VK+++ +RG+GFI R D +ED+FVH ++IVK NP K+ +S+G GE V+F++ +K
Sbjct: 9 VTGVVKWFNVRRGYGFINRDDMQEDVFVHHTAIVKNNPHKYLRSVGDGEKVEFDVVKAEK 68
Query: 170 DIEAINVTGPNGIPVQGA 187
+A NVTGP G VQG+
Sbjct: 69 GNQAANVTGPEGESVQGS 86
>gi|12862280|dbj|BAB32397.1| unnamed protein product [Mus musculus]
gi|148685263|gb|EDL17210.1| mCG147570 [Mus musculus]
Length = 199
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 59/87 (67%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK + + G+GFI R D KEDIFVH+++I K NP+K+ +S+G GE +F++ G+
Sbjct: 53 VLGTVKGFKVRNGYGFINRNDTKEDIFVHQTAIKKNNPRKYLRSVGDGETEEFDVVEGES 112
Query: 69 DIEAINVTGPNGIPVQGAPKSSSETVS 95
EA NVT P G+PVQG+ ++ VS
Sbjct: 113 GAEAANVTDPGGVPVQGSKYAADHNVS 139
Score = 82.8 bits (203), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 55/78 (70%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK + + G+GFI R D KEDIFVH+++I K NP+K+ +S+G GE +F++ G+
Sbjct: 53 VLGTVKGFKVRNGYGFINRNDTKEDIFVHQTAIKKNNPRKYLRSVGDGETEEFDVVEGES 112
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVT P G+PVQG+
Sbjct: 113 GAEAANVTDPGGVPVQGS 130
>gi|340376350|ref|XP_003386696.1| PREDICTED: B box-binding protein-like [Amphimedon queenslandica]
Length = 277
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 58/82 (70%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+ G VK+++ + G+GFI R D +DIFVH+++I+K NPKK+ +S+G GE+V+F + G K
Sbjct: 21 ISGTVKWFNVRSGYGFIKRDDTGDDIFVHQTAIIKNNPKKYLRSVGDGEVVEFIVIKGAK 80
Query: 170 DIEAINVTGPNGIPVQGAPKVP 191
EA VTGPNG VQG+ P
Sbjct: 81 GPEAAQVTGPNGAHVQGSKYAP 102
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 57/78 (73%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+ G VK+++ + G+GFI R D +DIFVH+++I+K NPKK+ +S+G GE+V+F + G K
Sbjct: 21 ISGTVKWFNVRSGYGFIKRDDTGDDIFVHQTAIIKNNPKKYLRSVGDGEVVEFIVIKGAK 80
Query: 69 DIEAINVTGPNGIPVQGA 86
EA VTGPNG VQG+
Sbjct: 81 GPEAAQVTGPNGAHVQGS 98
>gi|443732375|gb|ELU17129.1| hypothetical protein CAPTEDRAFT_50882, partial [Capitella teleta]
Length = 109
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 60/83 (72%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ +RG+GFI R D +ED+FVH ++IVK NP K+ +S+G GE V+F++ +K
Sbjct: 11 VTGAVKWFNVRRGYGFINRDDTQEDVFVHHTAIVKNNPHKYLRSVGDGEKVEFDVVEAEK 70
Query: 69 DIEAINVTGPNGIPVQGAPKSSS 91
+A NVTGP G VQG+ +++
Sbjct: 71 GNQAANVTGPEGESVQGSKYAAN 93
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 57/78 (73%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ +RG+GFI R D +ED+FVH ++IVK NP K+ +S+G GE V+F++ +K
Sbjct: 11 VTGAVKWFNVRRGYGFINRDDTQEDVFVHHTAIVKNNPHKYLRSVGDGEKVEFDVVEAEK 70
Query: 170 DIEAINVTGPNGIPVQGA 187
+A NVTGP G VQG+
Sbjct: 71 GNQAANVTGPEGESVQGS 88
>gi|443683711|gb|ELT87868.1| hypothetical protein CAPTEDRAFT_58124, partial [Capitella teleta]
Length = 109
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 57/78 (73%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ +RG+GFI R D +ED+FVH ++IVK NP K+ +S+G GE V+F++ +K
Sbjct: 11 VTGAVKWFNVRRGYGFINRDDTQEDVFVHHTAIVKNNPHKYLRSIGDGEKVEFDVVKAEK 70
Query: 69 DIEAINVTGPNGIPVQGA 86
+A NVTGP G VQG+
Sbjct: 71 GNQAANVTGPEGESVQGS 88
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 57/78 (73%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ +RG+GFI R D +ED+FVH ++IVK NP K+ +S+G GE V+F++ +K
Sbjct: 11 VTGAVKWFNVRRGYGFINRDDTQEDVFVHHTAIVKNNPHKYLRSIGDGEKVEFDVVKAEK 70
Query: 170 DIEAINVTGPNGIPVQGA 187
+A NVTGP G VQG+
Sbjct: 71 GNQAANVTGPEGESVQGS 88
>gi|443704660|gb|ELU01604.1| hypothetical protein CAPTEDRAFT_48958, partial [Capitella teleta]
Length = 109
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 57/78 (73%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G+VK+++ RG+GFI R D +ED+FVH ++IVK NP K+ +S+G GE V+F++ +K
Sbjct: 11 VTGVVKWFNVWRGYGFINRDDTQEDVFVHHTAIVKNNPHKYLRSVGDGEKVEFDVVKAEK 70
Query: 69 DIEAINVTGPNGIPVQGA 86
+A NVTGP G VQG+
Sbjct: 71 GNQAANVTGPEGESVQGS 88
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 57/78 (73%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G+VK+++ RG+GFI R D +ED+FVH ++IVK NP K+ +S+G GE V+F++ +K
Sbjct: 11 VTGVVKWFNVWRGYGFINRDDTQEDVFVHHTAIVKNNPHKYLRSVGDGEKVEFDVVKAEK 70
Query: 170 DIEAINVTGPNGIPVQGA 187
+A NVTGP G VQG+
Sbjct: 71 GNQAANVTGPEGESVQGS 88
>gi|321173535|gb|ADW77530.1| cold-shock-like protein [Heterodera glycines]
Length = 238
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 54/78 (69%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G+VK+++ G+GFI R D +DIFVH S+I NP K +SLG GE V F+I G K
Sbjct: 38 VSGVVKWFNVMNGYGFICRDDTNDDIFVHNSAITANNPSKIQRSLGDGEKVMFDIVDGAK 97
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G+PVQG+
Sbjct: 98 GPEAANVTGPDGVPVQGS 115
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 54/78 (69%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G+VK+++ G+GFI R D +DIFVH S+I NP K +SLG GE V F+I G K
Sbjct: 38 VSGVVKWFNVMNGYGFICRDDTNDDIFVHNSAITANNPSKIQRSLGDGEKVMFDIVDGAK 97
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G+PVQG+
Sbjct: 98 GPEAANVTGPDGVPVQGS 115
>gi|5441543|emb|CAB46826.1| DNA binding protein [Canis lupus familiaris]
Length = 96
Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 53/68 (77%)
Query: 19 KRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGP 78
+ G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V F++ G+K EA NVTGP
Sbjct: 3 RNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVQFDVVEGEKGAEAANVTGP 62
Query: 79 NGIPVQGA 86
+G+PV+G+
Sbjct: 63 DGVPVEGS 70
Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 53/68 (77%)
Query: 120 KRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGP 179
+ G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V F++ G+K EA NVTGP
Sbjct: 3 RNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVQFDVVEGEKGAEAANVTGP 62
Query: 180 NGIPVQGA 187
+G+PV+G+
Sbjct: 63 DGVPVEGS 70
>gi|444722480|gb|ELW63172.1| Nuclease-sensitive element-binding protein 1 [Tupaia chinensis]
Length = 273
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 56/78 (71%), Gaps = 1/78 (1%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK ++ + G+GFI R D KED+ VH+++I K NP+K+ +S+G GE ++F+ G+K
Sbjct: 130 VLGTVKCFNVRHGYGFINRNDTKEDVLVHQTAIKKNNPRKYLRSVGDGETMEFH-AEGEK 188
Query: 69 DIEAINVTGPNGIPVQGA 86
EA +VTGP G PVQG+
Sbjct: 189 GAEAADVTGPGGAPVQGS 206
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 56/78 (71%), Gaps = 1/78 (1%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK ++ + G+GFI R D KED+ VH+++I K NP+K+ +S+G GE ++F+ G+K
Sbjct: 130 VLGTVKCFNVRHGYGFINRNDTKEDVLVHQTAIKKNNPRKYLRSVGDGETMEFH-AEGEK 188
Query: 170 DIEAINVTGPNGIPVQGA 187
EA +VTGP G PVQG+
Sbjct: 189 GAEAADVTGPGGAPVQGS 206
>gi|443684315|gb|ELT88267.1| hypothetical protein CAPTEDRAFT_119722 [Capitella teleta]
Length = 123
Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 56/78 (71%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ +RG+GFI R D +ED+FVH ++IVK NP K +S+G GE V+F++ +K
Sbjct: 13 VTGAVKWFNMRRGYGFINRDDTQEDVFVHHTAIVKNNPHKCLRSVGDGEKVEFDVVEAEK 72
Query: 69 DIEAINVTGPNGIPVQGA 86
+A NVTGP G VQG+
Sbjct: 73 GNQAANVTGPEGESVQGS 90
Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 56/78 (71%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ +RG+GFI R D +ED+FVH ++IVK NP K +S+G GE V+F++ +K
Sbjct: 13 VTGAVKWFNMRRGYGFINRDDTQEDVFVHHTAIVKNNPHKCLRSVGDGEKVEFDVVEAEK 72
Query: 170 DIEAINVTGPNGIPVQGA 187
+A NVTGP G VQG+
Sbjct: 73 GNQAANVTGPEGESVQGS 90
>gi|326389103|ref|ZP_08210684.1| cold-shock DNA-binding protein family protein [Novosphingobium
nitrogenifigens DSM 19370]
gi|326206409|gb|EGD57245.1| cold-shock DNA-binding protein family protein [Novosphingobium
nitrogenifigens DSM 19370]
Length = 164
Score = 82.4 bits (202), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 89/166 (53%), Gaps = 22/166 (13%)
Query: 6 IHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI-- 63
+ T +G+VKF+++++GFGFI R D ED+FVH S++ + + L G+ + FN+
Sbjct: 6 VGTGKGVVKFFNAQKGFGFIQREDGGEDVFVHISAVERAG----LEGLAEGQQLQFNLVD 61
Query: 64 GVGKKDIEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGF 123
GK + V G + IPVQ S ++G G VKF++S +GF
Sbjct: 62 RGGKISAADLQVVG-DVIPVQAKAASPQRQLTG-----------EKATGTVKFFNSMKGF 109
Query: 124 GFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
GFITR D + D FVH S++ + + L G+ ++F++ V ++
Sbjct: 110 GFITRDDGQPDAFVHISAVERSG----LRELNEGDKLEFDLEVDRR 151
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 7/87 (8%)
Query: 107 VHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI-- 164
V T +G+VKF+++++GFGFI R D ED+FVH S++ + + L G+ + FN+
Sbjct: 6 VGTGKGVVKFFNAQKGFGFIQREDGGEDVFVHISAVERAG----LEGLAEGQQLQFNLVD 61
Query: 165 GVGKKDIEAINVTGPNGIPVQGAPKVP 191
GK + V G + IPVQ P
Sbjct: 62 RGGKISAADLQVVG-DVIPVQAKAASP 87
>gi|226474410|emb|CAX71691.1| putative cold shock domain protein A [Schistosoma japonicum]
Length = 203
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 65/113 (57%), Gaps = 7/113 (6%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V+G+VK+++ K G+GFI R D DIFVH+S+I + NP+K +SL GE V+F + G K
Sbjct: 26 VKGVVKWFNVKAGYGFINRQDTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEGDK 85
Query: 69 DIEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKR 121
EA VTGP G PV+G +V R P V +RG + S+R
Sbjct: 86 GDEASEVTGPGGEPVKG-------SVYAALRGRGRSPRVFNMRGKRSWDGSRR 131
Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 54/78 (69%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V+G+VK+++ K G+GFI R D DIFVH+S+I + NP+K +SL GE V+F + G K
Sbjct: 26 VKGVVKWFNVKAGYGFINRQDTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEGDK 85
Query: 170 DIEAINVTGPNGIPVQGA 187
EA VTGP G PV+G+
Sbjct: 86 GDEASEVTGPGGEPVKGS 103
>gi|87201154|ref|YP_498411.1| cold-shock DNA-binding protein family protein [Novosphingobium
aromaticivorans DSM 12444]
gi|87136835|gb|ABD27577.1| cold-shock DNA-binding protein family [Novosphingobium
aromaticivorans DSM 12444]
Length = 267
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 89/166 (53%), Gaps = 22/166 (13%)
Query: 6 IHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI-- 63
+ T +G+VKF++ ++GFGFI R D ED+FVH S++ + + L G+ ++FN+
Sbjct: 109 VGTGKGVVKFFNGQKGFGFIQREDGGEDVFVHISAVERAG----LEGLAEGQQLEFNLVD 164
Query: 64 GVGKKDIEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGF 123
GK + V G + IPV P S ++G G VKF+++ +GF
Sbjct: 165 RGGKISAADLQVVG-DVIPVAAKPASPQRELTG-----------EKASGTVKFFNAMKGF 212
Query: 124 GFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
GFITR D + D FVH S++ + + L G+ ++F++ V ++
Sbjct: 213 GFITRDDGQPDAFVHISAVERSG----LRELNEGDKLEFDLEVDRR 254
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 7/87 (8%)
Query: 107 VHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI-- 164
V T +G+VKF++ ++GFGFI R D ED+FVH S++ + + L G+ ++FN+
Sbjct: 109 VGTGKGVVKFFNGQKGFGFIQREDGGEDVFVHISAVERAG----LEGLAEGQQLEFNLVD 164
Query: 165 GVGKKDIEAINVTGPNGIPVQGAPKVP 191
GK + V G + IPV P P
Sbjct: 165 RGGKISAADLQVVG-DVIPVAAKPASP 190
>gi|443702116|gb|ELU00277.1| hypothetical protein CAPTEDRAFT_48743, partial [Capitella teleta]
Length = 109
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 56/78 (71%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ +RG+GFI R D +ED+FVH ++IVK NP K+ +S+G GE +F++ +K
Sbjct: 11 VTGAVKWFNVRRGYGFINRDDTQEDVFVHHTAIVKNNPHKYLRSVGDGEKEEFDVVKAEK 70
Query: 69 DIEAINVTGPNGIPVQGA 86
+A NVTGP G VQG+
Sbjct: 71 GNQAANVTGPEGESVQGS 88
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 56/78 (71%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ +RG+GFI R D +ED+FVH ++IVK NP K+ +S+G GE +F++ +K
Sbjct: 11 VTGAVKWFNVRRGYGFINRDDTQEDVFVHHTAIVKNNPHKYLRSVGDGEKEEFDVVKAEK 70
Query: 170 DIEAINVTGPNGIPVQGA 187
+A NVTGP G VQG+
Sbjct: 71 GNQAANVTGPEGESVQGS 88
>gi|226475498|emb|CAX77802.1| putative cold shock domain protein A [Schistosoma japonicum]
Length = 217
Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 66/118 (55%), Gaps = 15/118 (12%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V+G+VK+++ K G+GFI R D DIFVH+S+I + NP+K +SL GE V+F + G K
Sbjct: 26 VKGVVKWFNVKAGYGFINRQDTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEGDK 85
Query: 69 DIEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFI 126
EA VTGP G PV+G +V R P V +RG RG G++
Sbjct: 86 GDEASEVTGPGGEPVKG-------SVYAALRGRGRSPRVFNMRG--------RGRGWV 128
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 54/78 (69%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V+G+VK+++ K G+GFI R D DIFVH+S+I + NP+K +SL GE V+F + G K
Sbjct: 26 VKGVVKWFNVKAGYGFINRQDTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEGDK 85
Query: 170 DIEAINVTGPNGIPVQGA 187
EA VTGP G PV+G+
Sbjct: 86 GDEASEVTGPGGEPVKGS 103
>gi|159162382|pdb|1H95|A Chain A, Solution Structure Of The Single-Stranded Dna-Binding
Cold Shock Domain (Csd) Of Human Y-Box Protein 1 (Yb1)
Determined By Nmr (10 Lowest Energy Structures)
Length = 79
Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 55/78 (70%)
Query: 1 MTKFEIHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVD 60
M K V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+
Sbjct: 1 MKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVE 60
Query: 61 FNIGVGKKDIEAINVTGP 78
F++ G+K EA NVTGP
Sbjct: 61 FDVVEGEKGAEAANVTGP 78
Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 53/70 (75%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 9 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 68
Query: 170 DIEAINVTGP 179
EA NVTGP
Sbjct: 69 GAEAANVTGP 78
>gi|291394305|ref|XP_002713505.1| PREDICTED: DNA-binding protein B-like [Oryctolagus cuniculus]
Length = 301
Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 49/63 (77%)
Query: 24 FITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPV 83
FI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K EA NVTGP G+PV
Sbjct: 51 FINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPV 110
Query: 84 QGA 86
QG+
Sbjct: 111 QGS 113
Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 49/63 (77%)
Query: 125 FITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPV 184
FI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K EA NVTGP G+PV
Sbjct: 51 FINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPV 110
Query: 185 QGA 187
QG+
Sbjct: 111 QGS 113
>gi|332233044|ref|XP_003265713.1| PREDICTED: LOW QUALITY PROTEIN: DNA-binding protein A, partial
[Nomascus leucogenys]
Length = 362
Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 57/80 (71%), Gaps = 2/80 (2%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI--GVG 66
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE ++F
Sbjct: 79 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGENLNFEAVFLFS 138
Query: 67 KKDIEAINVTGPNGIPVQGA 86
+ EA NVTGP+G+PV+G+
Sbjct: 139 SQGAEAANVTGPDGVPVEGS 158
Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 57/80 (71%), Gaps = 2/80 (2%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI--GVG 167
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE ++F
Sbjct: 79 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGENLNFEAVFLFS 138
Query: 168 KKDIEAINVTGPNGIPVQGA 187
+ EA NVTGP+G+PV+G+
Sbjct: 139 SQGAEAANVTGPDGVPVEGS 158
>gi|358254912|dbj|GAA56562.1| DNA-binding protein A [Clonorchis sinensis]
Length = 270
Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 52/76 (68%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
VRG VK+++ K G+GFI R D DIFVH+S+I + NP + +SL GE V+F + G+K
Sbjct: 26 VRGEVKWFNVKSGYGFIHRQDTDTDIFVHQSAIARKNPDQLQRSLKEGEEVEFYVVEGEK 85
Query: 69 DIEAINVTGPNGIPVQ 84
EA VTGP+G PVQ
Sbjct: 86 GDEAYEVTGPDGAPVQ 101
Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 52/76 (68%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
VRG VK+++ K G+GFI R D DIFVH+S+I + NP + +SL GE V+F + G+K
Sbjct: 26 VRGEVKWFNVKSGYGFIHRQDTDTDIFVHQSAIARKNPDQLQRSLKEGEEVEFYVVEGEK 85
Query: 170 DIEAINVTGPNGIPVQ 185
EA VTGP+G PVQ
Sbjct: 86 GDEAYEVTGPDGAPVQ 101
>gi|312092494|ref|XP_003147356.1| cold-shock DNA-binding domain-containing protein [Loa loa]
Length = 227
Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 55/76 (72%)
Query: 19 KRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGP 78
K G+GFI R D +DIFVH++++ K NP K+ +SLG GE V+F++ G+K EA NVTGP
Sbjct: 4 KNGYGFINRADTGDDIFVHQTAVTKNNPNKYLRSLGDGEKVEFDVVEGQKGPEAANVTGP 63
Query: 79 NGIPVQGAPKSSSETV 94
NG V+G+ ++ ++V
Sbjct: 64 NGGNVEGSRYAADKSV 79
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 50/68 (73%)
Query: 120 KRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGP 179
K G+GFI R D +DIFVH++++ K NP K+ +SLG GE V+F++ G+K EA NVTGP
Sbjct: 4 KNGYGFINRADTGDDIFVHQTAVTKNNPNKYLRSLGDGEKVEFDVVEGQKGPEAANVTGP 63
Query: 180 NGIPVQGA 187
NG V+G+
Sbjct: 64 NGGNVEGS 71
>gi|226474422|emb|CAX71697.1| putative cold shock domain protein A [Schistosoma japonicum]
Length = 203
Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 54/78 (69%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V+G+VK+++ K G+GFI R D DIFVH+S+I + NP+K +SL GE V+F + G K
Sbjct: 26 VKGVVKWFNVKAGYGFINRQDTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEGDK 85
Query: 69 DIEAINVTGPNGIPVQGA 86
EA VTGP G PV+G+
Sbjct: 86 GDEASEVTGPGGEPVKGS 103
Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 54/78 (69%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V+G+VK+++ K G+GFI R D DIFVH+S+I + NP+K +SL GE V+F + G K
Sbjct: 26 VKGVVKWFNVKAGYGFINRQDTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEGDK 85
Query: 170 DIEAINVTGPNGIPVQGA 187
EA VTGP G PV+G+
Sbjct: 86 GDEASEVTGPGGEPVKGS 103
>gi|226474424|emb|CAX71698.1| putative cold shock domain protein A [Schistosoma japonicum]
Length = 203
Score = 79.0 bits (193), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 54/78 (69%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V+G+VK+++ K G+GFI R D DIFVH+S+I + NP+K +SL GE V+F + G K
Sbjct: 26 VKGVVKWFNVKAGYGFINRQDTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEGDK 85
Query: 69 DIEAINVTGPNGIPVQGA 86
EA VTGP G PV+G+
Sbjct: 86 GDEASEVTGPGGEPVKGS 103
Score = 79.0 bits (193), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 54/78 (69%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V+G+VK+++ K G+GFI R D DIFVH+S+I + NP+K +SL GE V+F + G K
Sbjct: 26 VKGVVKWFNVKAGYGFINRQDTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEGDK 85
Query: 170 DIEAINVTGPNGIPVQGA 187
EA VTGP G PV+G+
Sbjct: 86 GDEASEVTGPGGEPVKGS 103
>gi|256089136|ref|XP_002580672.1| Y box binding protein [Schistosoma mansoni]
gi|1477478|gb|AAC47760.1| Y-box binding protein [Schistosoma mansoni]
gi|1477484|gb|AAC47761.1| Y-box binding protein homolog [Schistosoma mansoni]
gi|350645803|emb|CCD59565.1| Y box binding protein, putative [Schistosoma mansoni]
Length = 217
Score = 79.0 bits (193), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 54/78 (69%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V+G+VK+++ K G+GFI R D DIFVH+S+I + NP+K +SL GE V+F + G K
Sbjct: 26 VKGVVKWFNVKAGYGFINRQDTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEGDK 85
Query: 69 DIEAINVTGPNGIPVQGA 86
EA VTGP G PV+G+
Sbjct: 86 GDEASEVTGPGGEPVKGS 103
Score = 79.0 bits (193), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 54/78 (69%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V+G+VK+++ K G+GFI R D DIFVH+S+I + NP+K +SL GE V+F + G K
Sbjct: 26 VKGVVKWFNVKAGYGFINRQDTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEGDK 85
Query: 170 DIEAINVTGPNGIPVQGA 187
EA VTGP G PV+G+
Sbjct: 86 GDEASEVTGPGGEPVKGS 103
>gi|226475488|emb|CAX77797.1| putative cold shock domain protein A [Schistosoma japonicum]
Length = 214
Score = 79.0 bits (193), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 54/78 (69%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V+G+VK+++ K G+GFI R D DIFVH+S+I + NP+K +SL GE V+F + G K
Sbjct: 26 VKGVVKWFNVKAGYGFINRQDTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEGDK 85
Query: 69 DIEAINVTGPNGIPVQGA 86
EA VTGP G PV+G+
Sbjct: 86 GDEASEVTGPGGEPVKGS 103
Score = 79.0 bits (193), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 54/78 (69%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V+G+VK+++ K G+GFI R D DIFVH+S+I + NP+K +SL GE V+F + G K
Sbjct: 26 VKGVVKWFNVKAGYGFINRQDTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEGDK 85
Query: 170 DIEAINVTGPNGIPVQGA 187
EA VTGP G PV+G+
Sbjct: 86 GDEASEVTGPGGEPVKGS 103
>gi|256089134|ref|XP_002580671.1| Y box binding protein [Schistosoma mansoni]
gi|350645802|emb|CCD59564.1| Y box binding protein, putative [Schistosoma mansoni]
Length = 167
Score = 79.0 bits (193), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 54/78 (69%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V+G+VK+++ K G+GFI R D DIFVH+S+I + NP+K +SL GE V+F + G K
Sbjct: 26 VKGVVKWFNVKAGYGFINRQDTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEGDK 85
Query: 69 DIEAINVTGPNGIPVQGA 86
EA VTGP G PV+G+
Sbjct: 86 GDEASEVTGPGGEPVKGS 103
Score = 79.0 bits (193), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 54/78 (69%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V+G+VK+++ K G+GFI R D DIFVH+S+I + NP+K +SL GE V+F + G K
Sbjct: 26 VKGVVKWFNVKAGYGFINRQDTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEGDK 85
Query: 170 DIEAINVTGPNGIPVQGA 187
EA VTGP G PV+G+
Sbjct: 86 GDEASEVTGPGGEPVKGS 103
>gi|226475490|emb|CAX77798.1| putative cold shock domain protein A [Schistosoma japonicum]
Length = 217
Score = 79.0 bits (193), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 54/78 (69%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V+G+VK+++ K G+GFI R D DIFVH+S+I + NP+K +SL GE V+F + G K
Sbjct: 26 VKGVVKWFNVKAGYGFINRQDTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEGDK 85
Query: 69 DIEAINVTGPNGIPVQGA 86
EA VTGP G PV+G+
Sbjct: 86 GDEASEVTGPGGEPVKGS 103
Score = 79.0 bits (193), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 54/78 (69%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V+G+VK+++ K G+GFI R D DIFVH+S+I + NP+K +SL GE V+F + G K
Sbjct: 26 VKGVVKWFNVKAGYGFINRQDTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEGDK 85
Query: 170 DIEAINVTGPNGIPVQGA 187
EA VTGP G PV+G+
Sbjct: 86 GDEASEVTGPGGEPVKGS 103
>gi|226475506|emb|CAX77806.1| putative cold shock domain protein A [Schistosoma japonicum]
Length = 217
Score = 79.0 bits (193), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 54/78 (69%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V+G+VK+++ K G+GFI R D DIFVH+S+I + NP+K +SL GE V+F + G K
Sbjct: 26 VKGVVKWFNVKAGYGFINRQDTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEGDK 85
Query: 69 DIEAINVTGPNGIPVQGA 86
EA VTGP G PV+G+
Sbjct: 86 GDEASEVTGPGGEPVKGS 103
Score = 79.0 bits (193), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 54/78 (69%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V+G+VK+++ K G+GFI R D DIFVH+S+I + NP+K +SL GE V+F + G K
Sbjct: 26 VKGVVKWFNVKAGYGFINRQDTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEGDK 85
Query: 170 DIEAINVTGPNGIPVQGA 187
EA VTGP G PV+G+
Sbjct: 86 GDEASEVTGPGGEPVKGS 103
>gi|226475502|emb|CAX77804.1| putative cold shock domain protein A [Schistosoma japonicum]
Length = 217
Score = 79.0 bits (193), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 54/78 (69%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V+G+VK+++ K G+GFI R D DIFVH+S+I + NP+K +SL GE V+F + G K
Sbjct: 26 VKGVVKWFNVKAGYGFINRQDTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEGDK 85
Query: 69 DIEAINVTGPNGIPVQGA 86
EA VTGP G PV+G+
Sbjct: 86 GDEASEVTGPGGEPVKGS 103
Score = 79.0 bits (193), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 54/78 (69%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V+G+VK+++ K G+GFI R D DIFVH+S+I + NP+K +SL GE V+F + G K
Sbjct: 26 VKGVVKWFNVKAGYGFINRQDTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEGDK 85
Query: 170 DIEAINVTGPNGIPVQGA 187
EA VTGP G PV+G+
Sbjct: 86 GDEASEVTGPGGEPVKGS 103
>gi|226474412|emb|CAX71692.1| putative cold shock domain protein A [Schistosoma japonicum]
gi|226474414|emb|CAX71693.1| putative cold shock domain protein A [Schistosoma japonicum]
gi|226474416|emb|CAX71694.1| putative cold shock domain protein A [Schistosoma japonicum]
gi|226474420|emb|CAX71696.1| putative cold shock domain protein A [Schistosoma japonicum]
gi|226474426|emb|CAX71699.1| putative cold shock domain protein A [Schistosoma japonicum]
gi|226475492|emb|CAX77799.1| putative cold shock domain protein A [Schistosoma japonicum]
gi|226475494|emb|CAX77800.1| putative cold shock domain protein A [Schistosoma japonicum]
gi|226475496|emb|CAX77801.1| putative cold shock domain protein A [Schistosoma japonicum]
gi|226475500|emb|CAX77803.1| putative cold shock domain protein A [Schistosoma japonicum]
gi|226475508|emb|CAX77807.1| putative cold shock domain protein A [Schistosoma japonicum]
gi|226475510|emb|CAX77808.1| putative cold shock domain protein A [Schistosoma japonicum]
Length = 217
Score = 79.0 bits (193), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 54/78 (69%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V+G+VK+++ K G+GFI R D DIFVH+S+I + NP+K +SL GE V+F + G K
Sbjct: 26 VKGVVKWFNVKAGYGFINRQDTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEGDK 85
Query: 69 DIEAINVTGPNGIPVQGA 86
EA VTGP G PV+G+
Sbjct: 86 GDEASEVTGPGGEPVKGS 103
Score = 79.0 bits (193), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 54/78 (69%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V+G+VK+++ K G+GFI R D DIFVH+S+I + NP+K +SL GE V+F + G K
Sbjct: 26 VKGVVKWFNVKAGYGFINRQDTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEGDK 85
Query: 170 DIEAINVTGPNGIPVQGA 187
EA VTGP G PV+G+
Sbjct: 86 GDEASEVTGPGGEPVKGS 103
>gi|14150689|gb|AAK54601.1|AF373220_1 Y-box DNA-binding protein [Schistosoma japonicum]
gi|14039811|gb|AAK53394.1| Y-box binding protein [Schistosoma japonicum]
Length = 202
Score = 79.0 bits (193), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 54/78 (69%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V+G+VK+++ K G+GFI R D DIFVH+S+I + NP+K +SL GE V+F + G K
Sbjct: 26 VKGVVKWFNVKAGYGFINRQDTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEGDK 85
Query: 69 DIEAINVTGPNGIPVQGA 86
EA VTGP G PV+G+
Sbjct: 86 GDEASEVTGPGGEPVKGS 103
Score = 79.0 bits (193), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 54/78 (69%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V+G+VK+++ K G+GFI R D DIFVH+S+I + NP+K +SL GE V+F + G K
Sbjct: 26 VKGVVKWFNVKAGYGFINRQDTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEGDK 85
Query: 170 DIEAINVTGPNGIPVQGA 187
EA VTGP G PV+G+
Sbjct: 86 GDEASEVTGPGGEPVKGS 103
>gi|226474418|emb|CAX71695.1| putative cold shock domain protein A [Schistosoma japonicum]
Length = 217
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 54/78 (69%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V+G+VK+++ K G+GFI R D DIFVH+S+I + NP+K +SL GE V+F + G K
Sbjct: 26 VKGVVKWFNVKAGYGFINRQDTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEGDK 85
Query: 69 DIEAINVTGPNGIPVQGA 86
EA VTGP G PV+G+
Sbjct: 86 GDEASEVTGPGGEPVKGS 103
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 54/78 (69%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V+G+VK+++ K G+GFI R D DIFVH+S+I + NP+K +SL GE V+F + G K
Sbjct: 26 VKGVVKWFNVKAGYGFINRQDTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEGDK 85
Query: 170 DIEAINVTGPNGIPVQGA 187
EA VTGP G PV+G+
Sbjct: 86 GDEASEVTGPGGEPVKGS 103
>gi|226475504|emb|CAX77805.1| putative cold shock domain protein A [Schistosoma japonicum]
Length = 203
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 54/78 (69%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V+G+VK+++ K G+GFI R D DIFVH+S+I + NP+K +SL GE V+F + G K
Sbjct: 26 VKGVVKWFNVKAGYGFINRQDTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEGDK 85
Query: 69 DIEAINVTGPNGIPVQGA 86
EA VTGP G PV+G+
Sbjct: 86 GDEASEVTGPGGEPVKGS 103
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 54/78 (69%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V+G+VK+++ K G+GFI R D DIFVH+S+I + NP+K +SL GE V+F + G K
Sbjct: 26 VKGVVKWFNVKAGYGFINRQDTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEGDK 85
Query: 170 DIEAINVTGPNGIPVQGA 187
EA VTGP G PV+G+
Sbjct: 86 GDEASEVTGPGGEPVKGS 103
>gi|443733887|gb|ELU18084.1| hypothetical protein CAPTEDRAFT_40103, partial [Capitella teleta]
Length = 90
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 56/82 (68%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G K+++ +RG+G I R + +ED+FVH +IVK NP K+ +S+G GE V+F++ +K
Sbjct: 4 VTGAAKWFNVRRGYGLINRDNTQEDVFVHHIAIVKNNPHKYLRSVGDGEKVEFDVVKTEK 63
Query: 69 DIEAINVTGPNGIPVQGAPKSS 90
+A NVTGP G VQG+ +S
Sbjct: 64 SNQAANVTGPEGESVQGSKYAS 85
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 54/78 (69%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G K+++ +RG+G I R + +ED+FVH +IVK NP K+ +S+G GE V+F++ +K
Sbjct: 4 VTGAAKWFNVRRGYGLINRDNTQEDVFVHHIAIVKNNPHKYLRSVGDGEKVEFDVVKTEK 63
Query: 170 DIEAINVTGPNGIPVQGA 187
+A NVTGP G VQG+
Sbjct: 64 SNQAANVTGPEGESVQGS 81
>gi|256089138|ref|XP_002580673.1| Y box binding protein [Schistosoma mansoni]
gi|350645804|emb|CCD59566.1| Y box binding protein, putative [Schistosoma mansoni]
Length = 231
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 54/78 (69%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V+G+VK+++ K G+GFI R D DIFVH+S+I + NP+K +SL GE V+F + G K
Sbjct: 26 VKGVVKWFNVKAGYGFINRQDTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEGDK 85
Query: 69 DIEAINVTGPNGIPVQGA 86
EA VTGP G PV+G+
Sbjct: 86 GDEASEVTGPGGEPVKGS 103
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 54/78 (69%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V+G+VK+++ K G+GFI R D DIFVH+S+I + NP+K +SL GE V+F + G K
Sbjct: 26 VKGVVKWFNVKAGYGFINRQDTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEGDK 85
Query: 170 DIEAINVTGPNGIPVQGA 187
EA VTGP G PV+G+
Sbjct: 86 GDEASEVTGPGGEPVKGS 103
>gi|56754985|gb|AAW25675.1| SJCHGC00971 protein [Schistosoma japonicum]
Length = 250
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 54/78 (69%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V+G+VK+++ K G+GFI R D DIFVH+S+I + NP+K +SL GE V+F + G K
Sbjct: 26 VKGVVKWFNVKAGYGFINRQDTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEGDK 85
Query: 69 DIEAINVTGPNGIPVQGA 86
EA VTGP G PV+G+
Sbjct: 86 GDEASEVTGPGGEPVKGS 103
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 54/78 (69%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V+G+VK+++ K G+GFI R D DIFVH+S+I + NP+K +SL GE V+F + G K
Sbjct: 26 VKGVVKWFNVKAGYGFINRQDTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEGDK 85
Query: 170 DIEAINVTGPNGIPVQGA 187
EA VTGP G PV+G+
Sbjct: 86 GDEASEVTGPGGEPVKGS 103
>gi|256089122|ref|XP_002580665.1| cold shock domain protein A [Schistosoma mansoni]
gi|350645796|emb|CCD59558.1| cold shock domain protein A, putative [Schistosoma mansoni]
Length = 175
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 58/89 (65%)
Query: 99 RNDSFFPAVHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGE 158
RN S VRG+VK+++ K G+GFITR D DIFVH+++I + NP K +SL E
Sbjct: 7 RNASRGMTEDRVRGVVKWFNVKAGYGFITRSDTSSDIFVHQTAISRNNPGKMQRSLQENE 66
Query: 159 IVDFNIGVGKKDIEAINVTGPNGIPVQGA 187
V+F + G K +EA +VTGP+ PV+G+
Sbjct: 67 EVEFFVVEGDKGVEASDVTGPDRRPVKGS 95
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 55/78 (70%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
VRG+VK+++ K G+GFITR D DIFVH+++I + NP K +SL E V+F + G K
Sbjct: 18 VRGVVKWFNVKAGYGFITRSDTSSDIFVHQTAISRNNPGKMQRSLQENEEVEFFVVEGDK 77
Query: 69 DIEAINVTGPNGIPVQGA 86
+EA +VTGP+ PV+G+
Sbjct: 78 GVEASDVTGPDRRPVKGS 95
>gi|431922579|gb|ELK19522.1| Prefoldin subunit 6-like protein [Pteropus alecto]
Length = 896
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 33/60 (55%), Positives = 47/60 (78%)
Query: 27 RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGA 86
R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K EA NVTGP G+PVQG+
Sbjct: 649 RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGS 708
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 33/60 (55%), Positives = 47/60 (78%)
Query: 128 RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGA 187
R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K EA NVTGP G+PVQG+
Sbjct: 649 RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGS 708
>gi|334142900|ref|YP_004536108.1| CspA family cold shock protein [Novosphingobium sp. PP1Y]
gi|333940932|emb|CCA94290.1| cold shock protein (beta-ribbon, CspA family) [Novosphingobium sp.
PP1Y]
Length = 164
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 95/180 (52%), Gaps = 28/180 (15%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI--GVGK 67
RG+VKF++S +GFGFI R + +D+FVH S++ + + L G+ ++F + GK
Sbjct: 10 RGVVKFFNSAKGFGFIQRDEGGDDVFVHISAVERAG----LEGLAEGQQLEFQLVDRGGK 65
Query: 68 KDIEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFIT 127
+ V G + IPVQ + ++G G VKF++S +GFGFIT
Sbjct: 66 VSASDLVVVG-DVIPVQKREVAPQRQLTG-----------EKATGTVKFFNSMKGFGFIT 113
Query: 128 RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK-DIEAINVTGPNGIPVQG 186
R D + D FVH S++ + +L G+ V+F+I V ++ A+N++ P+QG
Sbjct: 114 RDDGQPDAFVHISAVERSG----LSALNEGDRVEFDIEVDRRGKYSAVNLS-----PLQG 164
>gi|444721373|gb|ELW62110.1| Nuclease-sensitive element-binding protein 1 [Tupaia chinensis]
Length = 678
Score = 77.0 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 33/60 (55%), Positives = 47/60 (78%)
Query: 27 RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGA 86
R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K EA NVTGP G+PVQG+
Sbjct: 431 RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGS 490
Score = 77.0 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 33/60 (55%), Positives = 47/60 (78%)
Query: 128 RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGA 187
R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K EA NVTGP G+PVQG+
Sbjct: 431 RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGS 490
>gi|431917564|gb|ELK16881.1| Tyrosine-protein kinase STYK1 [Pteropus alecto]
Length = 807
Score = 77.0 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 32/60 (53%), Positives = 48/60 (80%)
Query: 27 RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGA 86
R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K EA NVTGP+G+PV+G+
Sbjct: 79 RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGS 138
Score = 77.0 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 32/60 (53%), Positives = 48/60 (80%)
Query: 128 RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGA 187
R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K EA NVTGP+G+PV+G+
Sbjct: 79 RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGS 138
>gi|443706483|gb|ELU02509.1| hypothetical protein CAPTEDRAFT_105284, partial [Capitella
teleta]
Length = 100
Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 52/71 (73%)
Query: 16 YDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINV 75
++ +RG+GFI R D +ED+FVH ++IVK NP K+ +S+G GE V+F++ +K +A NV
Sbjct: 1 FNVRRGYGFINRDDTQEDVFVHHTAIVKNNPHKYLRSVGDGEKVEFDVVKAEKGNQAANV 60
Query: 76 TGPNGIPVQGA 86
TGP G VQG+
Sbjct: 61 TGPEGESVQGS 71
Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 52/71 (73%)
Query: 117 YDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINV 176
++ +RG+GFI R D +ED+FVH ++IVK NP K+ +S+G GE V+F++ +K +A NV
Sbjct: 1 FNVRRGYGFINRDDTQEDVFVHHTAIVKNNPHKYLRSVGDGEKVEFDVVKAEKGNQAANV 60
Query: 177 TGPNGIPVQGA 187
TGP G VQG+
Sbjct: 61 TGPEGESVQGS 71
>gi|350586335|ref|XP_003356548.2| PREDICTED: nuclease-sensitive element-binding protein 1-like [Sus
scrofa]
Length = 377
Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 47/60 (78%)
Query: 27 RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGA 86
R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K EA NVTGP G+PVQG+
Sbjct: 130 RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGS 189
Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 47/60 (78%)
Query: 128 RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGA 187
R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K EA NVTGP G+PVQG+
Sbjct: 130 RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGS 189
>gi|294884847|gb|ADF47434.1| cold shock domain-containing protein A, partial [Dugesia japonica]
Length = 190
Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/85 (50%), Positives = 56/85 (65%), Gaps = 1/85 (1%)
Query: 107 VHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGV 166
VH V G VK+Y+ K+G+GFI R D ED+FVH+S+I + P K +SLG E V F++
Sbjct: 12 VHKVTGKVKWYNVKKGYGFIHRDDVDEDVFVHQSAISRCQPGK-QKSLGEDEDVLFDVVK 70
Query: 167 GKKDIEAINVTGPNGIPVQGAPKVP 191
G K EA+NVTGPNG V G+ P
Sbjct: 71 GSKGNEAMNVTGPNGDAVLGSKFAP 95
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 55/81 (67%), Gaps = 1/81 (1%)
Query: 6 IHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGV 65
+H V G VK+Y+ K+G+GFI R D ED+FVH+S+I + P K +SLG E V F++
Sbjct: 12 VHKVTGKVKWYNVKKGYGFIHRDDVDEDVFVHQSAISRCQPGK-QKSLGEDEDVLFDVVK 70
Query: 66 GKKDIEAINVTGPNGIPVQGA 86
G K EA+NVTGPNG V G+
Sbjct: 71 GSKGNEAMNVTGPNGDAVLGS 91
>gi|296470652|tpg|DAA12767.1| TPA: cold shock domain protein A short-like [Bos taurus]
Length = 323
Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 53/78 (67%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G V ++ K+G+GFI+R D +ED+FVH ++I NP + S+ GE+V+F++ G+
Sbjct: 68 VLGTVVWFKEKKGYGFISRQDTQEDVFVHHTAITGKNPCTYRGSVDDGEMVEFDVVQGEW 127
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G P++G+
Sbjct: 128 GTEAANVTGPAGAPLKGS 145
Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 53/78 (67%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G V ++ K+G+GFI+R D +ED+FVH ++I NP + S+ GE+V+F++ G+
Sbjct: 68 VLGTVVWFKEKKGYGFISRQDTQEDVFVHHTAITGKNPCTYRGSVDDGEMVEFDVVQGEW 127
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G P++G+
Sbjct: 128 GTEAANVTGPAGAPLKGS 145
>gi|432104501|gb|ELK31119.1| Nuclease-sensitive element-binding protein 1, partial [Myotis
davidii]
Length = 248
Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 47/60 (78%)
Query: 27 RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGA 86
R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K EA NVTGP G+PVQG+
Sbjct: 1 RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGS 60
Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 47/60 (78%)
Query: 128 RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGA 187
R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K EA NVTGP G+PVQG+
Sbjct: 1 RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGS 60
>gi|56755411|gb|AAW25885.1| SJCHGC05173 protein [Schistosoma japonicum]
gi|226470954|emb|CAX76910.1| putative DNA-binding protein [Schistosoma japonicum]
gi|226470956|emb|CAX76911.1| putative DNA-binding protein [Schistosoma japonicum]
gi|226470958|emb|CAX76912.1| putative DNA-binding protein [Schistosoma japonicum]
gi|226470960|emb|CAX76913.1| putative DNA-binding protein [Schistosoma japonicum]
gi|226470962|emb|CAX76914.1| putative DNA-binding protein [Schistosoma japonicum]
gi|226470964|emb|CAX76915.1| putative DNA-binding protein [Schistosoma japonicum]
gi|226470966|emb|CAX76916.1| putative DNA-binding protein [Schistosoma japonicum]
gi|226470968|emb|CAX76917.1| putative DNA-binding protein [Schistosoma japonicum]
gi|226473230|emb|CAX71301.1| putative DNA-binding protein [Schistosoma japonicum]
gi|226473232|emb|CAX71302.1| putative DNA-binding protein [Schistosoma japonicum]
gi|226473234|emb|CAX71303.1| putative DNA-binding protein [Schistosoma japonicum]
gi|226473236|emb|CAX71304.1| putative DNA-binding protein [Schistosoma japonicum]
gi|226473238|emb|CAX71305.1| putative DNA-binding protein [Schistosoma japonicum]
Length = 175
Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 54/80 (67%)
Query: 7 HTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVG 66
VRG+VK+++ K G+GFITR D DIFVH+++I + NP K +SL E V+F + G
Sbjct: 16 ERVRGVVKWFNVKAGYGFITRSDTSSDIFVHQTAISRNNPGKMQRSLQENEEVEFFVVEG 75
Query: 67 KKDIEAINVTGPNGIPVQGA 86
K +EA +VTGP PV+G+
Sbjct: 76 DKGVEASDVTGPERRPVKGS 95
Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 54/80 (67%)
Query: 108 HTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVG 167
VRG+VK+++ K G+GFITR D DIFVH+++I + NP K +SL E V+F + G
Sbjct: 16 ERVRGVVKWFNVKAGYGFITRSDTSSDIFVHQTAISRNNPGKMQRSLQENEEVEFFVVEG 75
Query: 168 KKDIEAINVTGPNGIPVQGA 187
K +EA +VTGP PV+G+
Sbjct: 76 DKGVEASDVTGPERRPVKGS 95
>gi|351701552|gb|EHB04471.1| Y-box-binding protein 2 [Heterocephalus glaber]
Length = 266
Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 48/65 (73%)
Query: 22 FGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGI 81
F R D KED+FVH+++I + NP+KF +S+G GE V+F++ G+K EA NVTGP G+
Sbjct: 16 FRTAARNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEAANVTGPGGV 75
Query: 82 PVQGA 86
PV+G+
Sbjct: 76 PVKGS 80
Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 48/65 (73%)
Query: 123 FGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGI 182
F R D KED+FVH+++I + NP+KF +S+G GE V+F++ G+K EA NVTGP G+
Sbjct: 16 FRTAARNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEAANVTGPGGV 75
Query: 183 PVQGA 187
PV+G+
Sbjct: 76 PVKGS 80
>gi|395526735|ref|XP_003765512.1| PREDICTED: nuclease-sensitive element-binding protein 1
[Sarcophilus harrisii]
Length = 273
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 56/86 (65%), Gaps = 2/86 (2%)
Query: 1 MTKFEIHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVD 60
++ E VR + + SK + D KED+FVH+++I K NP+K+ +S+G GE V+
Sbjct: 2 VSSTEQSAVRNNI--FQSKLKMETWKKNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVE 59
Query: 61 FNIGVGKKDIEAINVTGPNGIPVQGA 86
F++ G+K EA NVTGP G+PVQG+
Sbjct: 60 FDVVEGEKGAEAANVTGPGGVPVQGS 85
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 50/72 (69%)
Query: 116 FYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAIN 175
+ SK + D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K EA N
Sbjct: 14 IFQSKLKMETWKKNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAAN 73
Query: 176 VTGPNGIPVQGA 187
VTGP G+PVQG+
Sbjct: 74 VTGPGGVPVQGS 85
>gi|1483311|emb|CAA68079.1| Y-box protein [Dugesia japonica]
Length = 266
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 58/82 (70%), Gaps = 1/82 (1%)
Query: 6 IHT-VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIG 64
+HT + G VK+++ KRG+GF+ R DN+EDIF+H+S+IVK NP +S+G GE + F+I
Sbjct: 25 LHTGITGKVKWFNVKRGYGFVCRNDNQEDIFIHQSAIVKSNPDHPRKSVGEGEEILFDIV 84
Query: 65 VGKKDIEAINVTGPNGIPVQGA 86
G K EA NV+ +G V+G+
Sbjct: 85 KGAKGNEAANVSAIDGKCVKGS 106
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 58/82 (70%), Gaps = 1/82 (1%)
Query: 107 VHT-VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIG 165
+HT + G VK+++ KRG+GF+ R DN+EDIF+H+S+IVK NP +S+G GE + F+I
Sbjct: 25 LHTGITGKVKWFNVKRGYGFVCRNDNQEDIFIHQSAIVKSNPDHPRKSVGEGEEILFDIV 84
Query: 166 VGKKDIEAINVTGPNGIPVQGA 187
G K EA NV+ +G V+G+
Sbjct: 85 KGAKGNEAANVSAIDGKCVKGS 106
>gi|351704597|gb|EHB07516.1| DNA-binding protein A [Heterocephalus glaber]
Length = 444
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 47/58 (81%)
Query: 29 DNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGA 86
D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K EA NVTGP+G+PV+G+
Sbjct: 17 DTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGS 74
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 47/58 (81%)
Query: 130 DNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGA 187
D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K EA NVTGP+G+PV+G+
Sbjct: 17 DTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGS 74
>gi|334346165|ref|YP_004554717.1| cold-shock DNA-binding domain-containing protein [Sphingobium
chlorophenolicum L-1]
gi|334102787|gb|AEG50211.1| cold-shock DNA-binding domain protein [Sphingobium chlorophenolicum
L-1]
Length = 275
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 82/164 (50%), Gaps = 13/164 (7%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLG-EIVDFNIGVGKKD 69
G+VKF++ ++GFGFI R D ED+FVH S++ + + LG +VD GK
Sbjct: 107 GVVKFFNGQKGFGFIVRDDGGEDVFVHISAVEQAGLTGLAEGQQLGFTLVDRG---GKVS 163
Query: 70 IEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVH----TVRGIVKFYDSKRGFGF 125
+ + G +PV P+ E +G + P G VKF+++ +GFGF
Sbjct: 164 ATDLKIEGEP-LPVTDRPREPREPRAGGFGGADRGPQRQLTGERASGTVKFFNAMKGFGF 222
Query: 126 ITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
I R D + D FVH S++ + +L G+ +DF + V ++
Sbjct: 223 IQRDDGQPDAFVHISAVERAG----MSALNEGDRLDFELEVDRR 262
>gi|281347702|gb|EFB23286.1| hypothetical protein PANDA_020808 [Ailuropoda melanoleuca]
Length = 341
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 47/58 (81%)
Query: 29 DNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGA 86
D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K EA NVTGP+G+PV+G+
Sbjct: 82 DTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGS 139
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 47/58 (81%)
Query: 130 DNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGA 187
D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K EA NVTGP+G+PV+G+
Sbjct: 82 DTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGS 139
>gi|296470657|tpg|DAA12772.1| TPA: cold shock domain protein A short-like [Bos taurus]
Length = 370
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 52/78 (66%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G V ++ K+G+GFI R D +ED+FVH ++I P K+ S+ GE V+F++ G++
Sbjct: 68 VLGTVVWFKDKKGYGFIRRHDTQEDVFVHHTAITGETPCKYRGSVDDGETVEFDVVQGER 127
Query: 69 DIEAINVTGPNGIPVQGA 86
EA VTGP G+P++G+
Sbjct: 128 GTEAAKVTGPAGVPLKGS 145
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 52/78 (66%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G V ++ K+G+GFI R D +ED+FVH ++I P K+ S+ GE V+F++ G++
Sbjct: 68 VLGTVVWFKDKKGYGFIRRHDTQEDVFVHHTAITGETPCKYRGSVDDGETVEFDVVQGER 127
Query: 170 DIEAINVTGPNGIPVQGA 187
EA VTGP G+P++G+
Sbjct: 128 GTEAAKVTGPAGVPLKGS 145
>gi|399066410|ref|ZP_10748428.1| cold shock protein [Novosphingobium sp. AP12]
gi|398028263|gb|EJL21780.1| cold shock protein [Novosphingobium sp. AP12]
Length = 272
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 87/163 (53%), Gaps = 23/163 (14%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI--GVGK 67
RG+VKF+++ +GFGFI R + +D+FVH SS+ + + L G+ ++F + GK
Sbjct: 117 RGVVKFFNAAKGFGFIQREEGGDDVFVHISSVERAG----LEGLAEGQQLEFQLVDRGGK 172
Query: 68 KDIEAINVTGPNGIPV-QGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFI 126
++V G + IPV + P + ++G G VKF++S +GFGFI
Sbjct: 173 VSATDLSVVG-DVIPVAKREPAAPQRELTG-----------EKATGTVKFFNSMKGFGFI 220
Query: 127 TRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
TR D + D FVH S++ + L G+ V+F+I V ++
Sbjct: 221 TRDDGQPDAFVHISAVERSG----LSGLNEGDRVEFDIEVDRR 259
>gi|440909978|gb|ELR59822.1| Nuclease-sensitive element-binding protein 1, partial [Bos
grunniens mutus]
Length = 283
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 52/78 (66%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G V ++ K+G+GFI R D +ED+FVH ++I P K+ S+ GE V+F++ G++
Sbjct: 8 VLGTVVWFKDKKGYGFIRRHDTQEDVFVHHTAITGETPCKYRGSVDDGETVEFDVVQGER 67
Query: 69 DIEAINVTGPNGIPVQGA 86
EA VTGP G+P++G+
Sbjct: 68 GTEAAKVTGPAGVPLKGS 85
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 52/78 (66%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G V ++ K+G+GFI R D +ED+FVH ++I P K+ S+ GE V+F++ G++
Sbjct: 8 VLGTVVWFKDKKGYGFIRRHDTQEDVFVHHTAITGETPCKYRGSVDDGETVEFDVVQGER 67
Query: 170 DIEAINVTGPNGIPVQGA 187
EA VTGP G+P++G+
Sbjct: 68 GTEAAKVTGPAGVPLKGS 85
>gi|398386062|ref|ZP_10544071.1| cold shock protein, partial [Sphingobium sp. AP49]
gi|397718961|gb|EJK79537.1| cold shock protein, partial [Sphingobium sp. AP49]
Length = 189
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLG-EIVDFNIGVGKK 68
+G+VKF++ ++GFGFI R D ED+FVH S++ + + LG +VD V
Sbjct: 17 KGVVKFFNGQKGFGFIVREDGGEDVFVHISAVEQAGLTGLAEGQPLGFTLVDRGGKVSAT 76
Query: 69 DIEAINVTGPNGIPV--QGAPKSSSETVSGTY-----RNDSFFPAVHTVRGIVKFYDSKR 121
D+ V +PV +G P+ E +G + R G VKF+++ +
Sbjct: 77 DL----VIDGEPLPVTDRGPPREPREPRAGGFGGAPERGPQRQLTGERASGTVKFFNAMK 132
Query: 122 GFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
GFGFI R D + D FVH S++ + +L G+ +DF + V ++
Sbjct: 133 GFGFIQRDDGQPDAFVHISAVERAG----MAALNEGDRLDFELEVDRR 176
>gi|84497535|ref|ZP_00996357.1| Putative transcriptional regulator cold shock protein [Janibacter
sp. HTCC2649]
gi|84382423|gb|EAP98305.1| Putative transcriptional regulator cold shock protein [Janibacter
sp. HTCC2649]
Length = 314
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 67/132 (50%), Gaps = 6/132 (4%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 70
G V +YD +GFGFIT D+FVH + LG G+ V +++ V +K
Sbjct: 158 GTVSWYDGGKGFGFITSDSGGPDVFVHVRELADG-----LTELGEGDRVTYDVVVSEKGP 212
Query: 71 EAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFITRLD 130
+A +V G +GAP +S+ +R S PA G+V+ YD++RGFGFI
Sbjct: 213 QARDVRLARGSAPRGAPATSTPRARSGHREASNVPA-RGGEGVVERYDAERGFGFIAPDA 271
Query: 131 NKEDIFVHKSSI 142
D+FVH S +
Sbjct: 272 GGADLFVHVSVL 283
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 67/133 (50%), Gaps = 24/133 (18%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 70
G V+++D+ RGFGFI + ED++VH S IV + K + G++V+F +G G +
Sbjct: 4 GTVRWFDTDRGFGFIALGQDAEDLYVHASEIVSADAMKVLRE---GQVVEFEVGEGDR-- 58
Query: 71 EAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFITRLD 130
GP V+ +++T G V G V +Y+ +G+GFIT
Sbjct: 59 ------GPQARRVRVTADQAADTPLG-------------VLGTVSWYEPSKGYGFITPDG 99
Query: 131 NKEDIFVHKSSIV 143
+IFVH S+IV
Sbjct: 100 GGTEIFVHSSAIV 112
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 171
G V+++D+ RGFGFI + ED++VH S IV + K + G++V+F +G G +
Sbjct: 4 GTVRWFDTDRGFGFIALGQDAEDLYVHASEIVSADAMKVLRE---GQVVEFEVGEGDRGP 60
Query: 172 EAINV 176
+A V
Sbjct: 61 QARRV 65
>gi|393772125|ref|ZP_10360587.1| CspA family cold shock protein, partial [Novosphingobium sp. Rr
2-17]
gi|392722432|gb|EIZ79835.1| CspA family cold shock protein, partial [Novosphingobium sp. Rr
2-17]
Length = 169
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 90/171 (52%), Gaps = 23/171 (13%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI--GVGK 67
RG+VKF+++ +GFGFI R + +D+FVH SS+ + + L G+ ++F + GK
Sbjct: 15 RGVVKFFNAAKGFGFIQREEGGDDVFVHISSVERAG----LEGLAEGQQLEFQLVDRGGK 70
Query: 68 KDIEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFIT 127
++V G + IPV + ++G G VKF+++ +GFGFIT
Sbjct: 71 VSATDLSVVG-DVIPVAKKEPAPQRELTG-----------EKATGTVKFFNAMKGFGFIT 118
Query: 128 RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK-DIEAINVT 177
R D + D FVH S++ + L G+ V+F+I V ++ A+N++
Sbjct: 119 RDDGQPDAFVHISAVERSG----LSGLNEGDQVEFDIEVDRRGKYSAVNLS 165
>gi|149185382|ref|ZP_01863698.1| cold shock protein [Erythrobacter sp. SD-21]
gi|148830602|gb|EDL49037.1| cold shock protein [Erythrobacter sp. SD-21]
Length = 263
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 87/166 (52%), Gaps = 22/166 (13%)
Query: 6 IHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI-- 63
+ T +G VKF++S++GFGFI + EDIFVH S++ + + L G+ ++FN+
Sbjct: 106 VGTGKGTVKFFNSQKGFGFIQQETGGEDIFVHISAVERAG----LEGLAEGQELEFNLVD 161
Query: 64 GVGKKDIEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGF 123
GK + + V G + I V+ ++ ++G G VKF++S +GF
Sbjct: 162 RGGKVSAQDLQVVG-DVIAVEAKSEAPRRELTG-----------EKATGTVKFFNSMKGF 209
Query: 124 GFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
GF+TR D + D FVH S++ + + GE +F++ V ++
Sbjct: 210 GFLTRDDGQPDAFVHISAVERSG----LSQINEGERYEFDLEVDRR 251
>gi|157126269|ref|XP_001654567.1| hypothetical protein AaeL_AAEL002060 [Aedes aegypti]
gi|108882539|gb|EAT46764.1| AAEL002060-PA [Aedes aegypti]
Length = 192
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/79 (50%), Positives = 51/79 (64%), Gaps = 7/79 (8%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+ G VK++++K GFGFITR D EDIFVHKS I K N F +S+G GEIV+F + K
Sbjct: 34 ITGTVKWFNAKDGFGFITRHDTGEDIFVHKSCIFKPNRNHFTKSIGDGEIVEFGLIASK- 92
Query: 69 DIEAINVTGPNGIPVQGAP 87
VTGP PV+G+P
Sbjct: 93 ------VTGPGFKPVKGSP 105
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/79 (50%), Positives = 51/79 (64%), Gaps = 7/79 (8%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+ G VK++++K GFGFITR D EDIFVHKS I K N F +S+G GEIV+F + K
Sbjct: 34 ITGTVKWFNAKDGFGFITRHDTGEDIFVHKSCIFKPNRNHFTKSIGDGEIVEFGLIASK- 92
Query: 170 DIEAINVTGPNGIPVQGAP 188
VTGP PV+G+P
Sbjct: 93 ------VTGPGFKPVKGSP 105
>gi|322802596|gb|EFZ22889.1| hypothetical protein SINV_03993 [Solenopsis invicta]
Length = 331
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 53/72 (73%), Gaps = 2/72 (2%)
Query: 29 DNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGAPK 88
D KED+FVH+S+IVK NP+K +S+G GE+V+F++ +G+K EA NVTGP G V+G+P
Sbjct: 2 DTKEDVFVHQSAIVKNNPRKAVRSVGDGEVVEFDVVIGEKGHEAANVTGPAGEAVKGSPY 61
Query: 89 SSSETVSGTYRN 100
++ + YRN
Sbjct: 62 AADKRRG--YRN 71
Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 47/59 (79%)
Query: 130 DNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGAP 188
D KED+FVH+S+IVK NP+K +S+G GE+V+F++ +G+K EA NVTGP G V+G+P
Sbjct: 2 DTKEDVFVHQSAIVKNNPRKAVRSVGDGEVVEFDVVIGEKGHEAANVTGPAGEAVKGSP 60
>gi|85709645|ref|ZP_01040710.1| cold shock protein [Erythrobacter sp. NAP1]
gi|85688355|gb|EAQ28359.1| cold shock protein [Erythrobacter sp. NAP1]
Length = 262
Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 94/184 (51%), Gaps = 28/184 (15%)
Query: 6 IHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI-- 63
+ T +G VKF++ ++GFGFI + ED+FVH S++ + + L G+ ++FN+
Sbjct: 104 VGTGKGTVKFFNGQKGFGFIQQESGGEDVFVHISAVERAG----LEGLAEGQELEFNLVD 159
Query: 64 GVGKKDIEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGF 123
GK + + V G + I VQ A ++G G VKF++S +GF
Sbjct: 160 RGGKVSAQDLQVVG-DVIAVQQAGGPPKRELTG-----------EKATGTVKFFNSMKGF 207
Query: 124 GFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK-DIEAINVTGPNGI 182
GF+ R D + D FVH S++ + ++ GE +F++ V ++ A+N+ +
Sbjct: 208 GFLVRDDGQPDAFVHISAVERSG----LSAINEGERFEFDLEVDRRGKYSAVNL-----V 258
Query: 183 PVQG 186
PVQG
Sbjct: 259 PVQG 262
>gi|404254742|ref|ZP_10958710.1| cold-shock DNA-binding domain-containing protein [Sphingomonas sp.
PAMC 26621]
Length = 277
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 86/174 (49%), Gaps = 14/174 (8%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLG-EIVDFNIGVGKKD 69
G+VKF++ ++GFGF+ R D ED+FVH S++ + + LG +VD G+
Sbjct: 108 GVVKFFNGQKGFGFVVRDDGGEDVFVHISAVEQAGLTGLAEGQPLGFTLVDRG---GRIS 164
Query: 70 IEAINVTG-PNGIPVQGAPKSSSETVSGTYRNDSFFPAV----HTVRGIVKFYDSKRGFG 124
+ + G P + +G P+ G P G VKF+++ +GFG
Sbjct: 165 ATDLKIDGEPMAVTDRGPPRERDAAAPGGRPAPGGAPQRSLTGEKATGTVKFFNAMKGFG 224
Query: 125 FITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK-DIEAINVT 177
FI R D + D FVH S++ + SL G+ ++F + V ++ + A+N+T
Sbjct: 225 FIQRDDGQPDAFVHISAVERGG----MTSLNEGDRLEFELEVDRRGKMAAVNLT 274
>gi|146197784|dbj|BAF57611.1| Y-Box factor protein [Dugesia japonica]
Length = 178
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 171
G VK+Y+ K+G+GFI R D ED+FVH+S+I + P K +SLG E V F++ G K
Sbjct: 5 GKVKWYNVKKGYGFIHRDDVDEDVFVHQSAISRCQPGK-QKSLGEDEDVLFDVVKGSKGN 63
Query: 172 EAINVTGPNGIPVQGAPKVP 191
EA+NVTGPNG V G+ P
Sbjct: 64 EAMNVTGPNGDAVLGSKFAP 83
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 52/76 (68%), Gaps = 1/76 (1%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 70
G VK+Y+ K+G+GFI R D ED+FVH+S+I + P K +SLG E V F++ G K
Sbjct: 5 GKVKWYNVKKGYGFIHRDDVDEDVFVHQSAISRCQPGK-QKSLGEDEDVLFDVVKGSKGN 63
Query: 71 EAINVTGPNGIPVQGA 86
EA+NVTGPNG V G+
Sbjct: 64 EAMNVTGPNGDAVLGS 79
>gi|221504402|gb|EEE30077.1| glycine-rich protein, putative [Toxoplasma gondii VEG]
Length = 209
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 6/100 (6%)
Query: 3 KFEIHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFN 62
K E RG K++DSK+GFGFIT D D+FVH++ I F++L GE V+F
Sbjct: 82 KMEDQIQRGHCKWFDSKKGFGFITAEDGT-DLFVHQTEIKAQG----FRNLAEGESVEFR 136
Query: 63 IGVGKK-DIEAINVTGPNGIPVQGAPKSSSETVSGTYRND 101
+ VG +A++VTGPNG VQG P+ + G YR D
Sbjct: 137 VQVGHDGKRKAVSVTGPNGDFVQGEPRPRMDAGRGGYRGD 176
Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 51/80 (63%), Gaps = 6/80 (7%)
Query: 111 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK- 169
RG K++DSK+GFGFIT D D+FVH++ I F++L GE V+F + VG
Sbjct: 89 RGHCKWFDSKKGFGFITAEDGT-DLFVHQTEIKAQG----FRNLAEGESVEFRVQVGHDG 143
Query: 170 DIEAINVTGPNGIPVQGAPK 189
+A++VTGPNG VQG P+
Sbjct: 144 KRKAVSVTGPNGDFVQGEPR 163
>gi|221483569|gb|EEE21881.1| glycine-rich protein, putative [Toxoplasma gondii GT1]
Length = 209
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 6/100 (6%)
Query: 3 KFEIHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFN 62
K E RG K++DSK+GFGFIT D D+FVH++ I F++L GE V+F
Sbjct: 82 KMEDQIQRGHCKWFDSKKGFGFITAEDGT-DLFVHQTEIKAQG----FRNLAEGESVEFR 136
Query: 63 IGVGKK-DIEAINVTGPNGIPVQGAPKSSSETVSGTYRND 101
+ VG +A++VTGPNG VQG P+ + G YR D
Sbjct: 137 VQVGHDGKRKAVSVTGPNGDFVQGEPRPRMDAGRGGYRGD 176
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 51/80 (63%), Gaps = 6/80 (7%)
Query: 111 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK- 169
RG K++DSK+GFGFIT D D+FVH++ I F++L GE V+F + VG
Sbjct: 89 RGHCKWFDSKKGFGFITAEDGT-DLFVHQTEIKAQG----FRNLAEGESVEFRVQVGHDG 143
Query: 170 DIEAINVTGPNGIPVQGAPK 189
+A++VTGPNG VQG P+
Sbjct: 144 KRKAVSVTGPNGDFVQGEPR 163
>gi|237841239|ref|XP_002369917.1| glycine-rich protein 2, putative [Toxoplasma gondii ME49]
gi|211967581|gb|EEB02777.1| glycine-rich protein 2, putative [Toxoplasma gondii ME49]
Length = 209
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 6/100 (6%)
Query: 3 KFEIHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFN 62
K E RG K++DSK+GFGFIT D D+FVH++ I F++L GE V+F
Sbjct: 82 KMEDQIQRGHCKWFDSKKGFGFITAEDGT-DLFVHQTEIKAQG----FRNLAEGESVEFR 136
Query: 63 IGVGKK-DIEAINVTGPNGIPVQGAPKSSSETVSGTYRND 101
+ VG +A++VTGPNG VQG P+ + G YR D
Sbjct: 137 VQVGHDGKRKAVSVTGPNGDFVQGEPRPRMDAGRGGYRGD 176
Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 51/80 (63%), Gaps = 6/80 (7%)
Query: 111 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK- 169
RG K++DSK+GFGFIT D D+FVH++ I F++L GE V+F + VG
Sbjct: 89 RGHCKWFDSKKGFGFITAEDGT-DLFVHQTEIKAQG----FRNLAEGESVEFRVQVGHDG 143
Query: 170 DIEAINVTGPNGIPVQGAPK 189
+A++VTGPNG VQG P+
Sbjct: 144 KRKAVSVTGPNGDFVQGEPR 163
>gi|381202162|ref|ZP_09909278.1| cold shock protein [Sphingobium yanoikuyae XLDN2-5]
Length = 276
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 83/167 (49%), Gaps = 15/167 (8%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLG-EIVDFNIGVGKK 68
+G+VKF++ ++GFGFI R D ED+FVH S++ + + LG +VD V
Sbjct: 105 KGVVKFFNGQKGFGFIVRDDGGEDVFVHISAVEQAGLTGLAEGQPLGFTLVDRGGKVSAT 164
Query: 69 DIEAINVTGPNGIPV--QGAPKSSSETVSGTYRNDSFFPAVH----TVRGIVKFYDSKRG 122
D+ V +PV + P+ E +G + P G VKF+++ +G
Sbjct: 165 DL----VIDGEPLPVTDRAPPREPREPRAGGFGGAERGPQRQLTGERASGTVKFFNAMKG 220
Query: 123 FGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
FGFI R D + D FVH S++ + +L G+ +DF + V ++
Sbjct: 221 FGFIQRDDGQPDAFVHISAVERAG----MGALNEGDRLDFELEVDRR 263
>gi|209542291|ref|YP_002274520.1| cold-shock DNA-binding domain-containing protein [Gluconacetobacter
diazotrophicus PAl 5]
gi|209529968|gb|ACI49905.1| cold-shock DNA-binding domain protein [Gluconacetobacter
diazotrophicus PAl 5]
Length = 204
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 85/177 (48%), Gaps = 16/177 (9%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+ VK+++S++GFGF+ D D+F+H +++ S+ G + IG G K
Sbjct: 34 ISAAVKWFNSEKGFGFVELSDGSGDVFLHANALATSG----HDSVSPGTTLVVRIGQGPK 89
Query: 69 DIEAINVTGPNGIPVQ-------GAPKSSSETVSG-TYRNDSFFPAVHTVRGIVKFYDSK 120
+ +V + Q GAP++++ G R +RG+VK+Y++
Sbjct: 90 GRQVASVVSVDDSTAQPERPRGFGAPRAAAGGFGGRPSRPAPDLSQAQEMRGVVKWYNAT 149
Query: 121 RGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVT 177
+GFGFIT +DIFVH S++ + L G+ + + G+K EA +++
Sbjct: 150 KGFGFITPESGGKDIFVHASALERSG----LTGLTEGQTANVQVVQGQKGPEAASIS 202
>gi|426259218|ref|ZP_18878967.1| cold-shock DNA-binding domain-containing protein, partial
[Sphingomonas sp. LH128]
gi|425916419|gb|EKV41598.1| cold-shock DNA-binding domain-containing protein, partial
[Sphingomonas sp. LH128]
Length = 192
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 84/162 (51%), Gaps = 22/162 (13%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI--GVGK 67
+G+VKF+++ +GFGFI R + +D+FVH SS+ + + L G+ ++F + GK
Sbjct: 38 KGVVKFFNAAKGFGFIQRDEGGDDVFVHISSVERAG----LEGLAEGQQLEFQLVDRGGK 93
Query: 68 KDIEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFIT 127
+ V G + IPV + ++G G VKF++S +GFGFIT
Sbjct: 94 VSATDLVVVG-DVIPVAKREPAPQRQLTG-----------EKATGTVKFFNSMKGFGFIT 141
Query: 128 RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
R D + D FVH S++ + L G+ V+F+I V ++
Sbjct: 142 RDDGQPDAFVHISAVERSG----MSGLNEGDQVEFDIEVDRR 179
>gi|339018438|ref|ZP_08644573.1| transcriptional regulator cold shock protein [Acetobacter
tropicalis NBRC 101654]
gi|338752425|dbj|GAA07877.1| transcriptional regulator cold shock protein [Acetobacter
tropicalis NBRC 101654]
Length = 213
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 85/176 (48%), Gaps = 22/176 (12%)
Query: 13 VKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD--- 69
VK+++S++G+GF+ D D+F+H +++ ++ + + G + IG G K
Sbjct: 45 VKWFNSEKGYGFVELADGSGDVFLHANALSQIG----HEGVSPGATLVVRIGQGPKGRQV 100
Query: 70 IEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPA---------VHTVRGIVKFYDSK 120
E I+V P + P+S+ G R+ F A +RG VK+Y++
Sbjct: 101 AEVISVDESTAQPER--PRSAGGGFGGAPRSGGFARAPRPAPDMSFAEEIRGTVKWYNAT 158
Query: 121 RGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINV 176
+GFGFIT +DIFVH S++ + SL G+ + + G+K EA +
Sbjct: 159 KGFGFITPDGGGKDIFVHASALERSG----LSSLNEGQTANVKVVQGQKGPEAAQI 210
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+RG VK+Y++ +GFGFIT +DIFVH S++ + SL G+ + + G+K
Sbjct: 148 IRGTVKWYNATKGFGFITPDGGGKDIFVHASALERSG----LSSLNEGQTANVKVVQGQK 203
Query: 69 DIEAINV 75
EA +
Sbjct: 204 GPEAAQI 210
>gi|56754487|gb|AAW25431.1| unknown [Schistosoma japonicum]
Length = 104
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 52/77 (67%), Gaps = 1/77 (1%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V+G+VK+++ K G+GFI R D DIFVH+S+I + NP+K +SL GE V+F + G K
Sbjct: 26 VKGVVKWFNVKAGYGFINRQDTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEGDK 85
Query: 69 DIEAI-NVTGPNGIPVQ 84
EA +TGP G PV+
Sbjct: 86 GDEASGEMTGPGGEPVK 102
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 52/77 (67%), Gaps = 1/77 (1%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V+G+VK+++ K G+GFI R D DIFVH+S+I + NP+K +SL GE V+F + G K
Sbjct: 26 VKGVVKWFNVKAGYGFINRQDTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEGDK 85
Query: 170 DIEAI-NVTGPNGIPVQ 185
EA +TGP G PV+
Sbjct: 86 GDEASGEMTGPGGEPVK 102
>gi|443692620|gb|ELT94195.1| hypothetical protein CAPTEDRAFT_55545, partial [Capitella teleta]
Length = 149
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 54/75 (72%), Gaps = 1/75 (1%)
Query: 13 VKFYDSKRGFGFITRLDNK-EDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIE 71
VK+++ +RG+GFI R + + +D+FVH ++IVK NP K+ +S+G GE ++F++ +K +
Sbjct: 33 VKWFNVRRGYGFINRDNTQGDDVFVHHTAIVKNNPHKYLRSVGDGEKMEFDVMKAEKGNQ 92
Query: 72 AINVTGPNGIPVQGA 86
A NVTGP VQG+
Sbjct: 93 AANVTGPEKASVQGS 107
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 54/75 (72%), Gaps = 1/75 (1%)
Query: 114 VKFYDSKRGFGFITRLDNK-EDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIE 172
VK+++ +RG+GFI R + + +D+FVH ++IVK NP K+ +S+G GE ++F++ +K +
Sbjct: 33 VKWFNVRRGYGFINRDNTQGDDVFVHHTAIVKNNPHKYLRSVGDGEKMEFDVMKAEKGNQ 92
Query: 173 AINVTGPNGIPVQGA 187
A NVTGP VQG+
Sbjct: 93 AANVTGPEKASVQGS 107
>gi|355729516|gb|AES09893.1| Y box binding protein 2 [Mustela putorius furo]
Length = 242
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 45/56 (80%)
Query: 31 KEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGA 86
KED+FVH+++I + NP+KF +S+G GE V+F++ G+K EA NVTGP G+PV+G+
Sbjct: 2 KEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVKGS 57
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 45/56 (80%)
Query: 132 KEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGA 187
KED+FVH+++I + NP+KF +S+G GE V+F++ G+K EA NVTGP G+PV+G+
Sbjct: 2 KEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVKGS 57
>gi|162147665|ref|YP_001602126.1| cold shock-like protein cspE [Gluconacetobacter diazotrophicus PAl
5]
gi|161786242|emb|CAP55824.1| Cold shock-like protein cspE [Gluconacetobacter diazotrophicus PAl
5]
Length = 226
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 85/177 (48%), Gaps = 16/177 (9%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+ VK+++S++GFGF+ D D+F+H +++ S+ G + IG G K
Sbjct: 56 ISAAVKWFNSEKGFGFVELSDGSGDVFLHANALATSG----HDSVSPGTTLVVRIGQGPK 111
Query: 69 DIEAINVTGPNGIPVQ-------GAPKSSSETVSG-TYRNDSFFPAVHTVRGIVKFYDSK 120
+ +V + Q GAP++++ G R +RG+VK+Y++
Sbjct: 112 GRQVASVVSVDDSTAQPERPRGFGAPRAAAGGFGGRPSRPAPDLSQAQEMRGVVKWYNAT 171
Query: 121 RGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVT 177
+GFGFIT +DIFVH S++ + L G+ + + G+K EA +++
Sbjct: 172 KGFGFITPESGGKDIFVHASALERSG----LTGLTEGQTANVQVVQGQKGPEAASIS 224
>gi|103487825|ref|YP_617386.1| cold-shock DNA-binding domain-containing protein [Sphingopyxis
alaskensis RB2256]
gi|98977902|gb|ABF54053.1| cold-shock DNA-binding protein family [Sphingopyxis alaskensis
RB2256]
Length = 249
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 77/158 (48%), Gaps = 10/158 (6%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 69
+G VKF++ +GFGF+ R D ED+FVH S++ + Q L G+ + F +
Sbjct: 85 QGTVKFFNPSKGFGFVARDDGGEDVFVHISAVEQAG----LQGLASGQPLAFTLVERNGK 140
Query: 70 IEAINVT-GPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFITR 128
+ AI++ +PV+ E G R T G VKF+++ +GFGFI R
Sbjct: 141 VSAIDLKIEGEPMPVEEFAPRQREDRPGGARGRRQLTGERT-SGTVKFFNTTKGFGFIAR 199
Query: 129 LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGV 166
D + D FVH S++ + L G+ V F+I V
Sbjct: 200 DDGQADAFVHISAVQRAG----MAGLEEGDRVAFDIEV 233
>gi|338707892|ref|YP_004662093.1| cold-shock DNA-binding domain-containing protein [Zymomonas mobilis
subsp. pomaceae ATCC 29192]
gi|336294696|gb|AEI37803.1| cold-shock DNA-binding domain protein [Zymomonas mobilis subsp.
pomaceae ATCC 29192]
Length = 291
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 81/164 (49%), Gaps = 14/164 (8%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 70
G+VKF+++++GFGFI R D ED+FVH S++ + L G+ + F + +
Sbjct: 124 GVVKFFNAQKGFGFIVRDDGGEDVFVHISAVEQAG----LTGLAEGQPLSFTLVDRGGRV 179
Query: 71 EAINVTGPNGIPV----QGAPKSSSETVSGTYRNDSFFPAV-HTVRGIVKFYDSKRGFGF 125
A N+ G G P+ AP+SS G G VKF+++ +GFGF
Sbjct: 180 SATNL-GIEGEPLPITESSAPRSSGGEFGGARSGGPQRQLTGEKSSGTVKFFNAMKGFGF 238
Query: 126 ITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
I R D + D FVH S++ + SL G+ + F + V ++
Sbjct: 239 IQRDDGQPDAFVHISAVERAG----LPSLNEGDRLTFELEVDRR 278
>gi|357031671|ref|ZP_09093614.1| putative transcriptional regulator cold shock protein
[Gluconobacter morbifer G707]
gi|356414901|gb|EHH68545.1| putative transcriptional regulator cold shock protein
[Gluconobacter morbifer G707]
Length = 209
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 84/173 (48%), Gaps = 17/173 (9%)
Query: 13 VKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEA 72
VK++++++GFGF+ D D+F+H +++ + S+ G V IG G K +
Sbjct: 44 VKWFNTEKGFGFVELADGSGDVFLHANALTNAG----YNSVNPGATVVVRIGQGPKGRQV 99
Query: 73 INVTGPNGIPVQGAPKSSSE-----TVSGTYRNDSFFP---AVHTVRGIVKFYDSKRGFG 124
V + + P+ S+ G R P +RG VK+Y++ +GFG
Sbjct: 100 AEVLSVDESTAE-EPRPRSQFGAQPRFGGGARPGRPAPDLSQAEDIRGTVKWYNATKGFG 158
Query: 125 FITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVT 177
FIT +DIFVH S++ + + QSL G+ ++ + G+K EA +T
Sbjct: 159 FITPDSGGKDIFVHASALERSH----LQSLDEGQTINVKVVQGQKGPEAAEIT 207
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 4/72 (5%)
Query: 5 EIHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIG 64
+ +RG VK+Y++ +GFGFIT +DIFVH S++ + + QSL G+ ++ +
Sbjct: 140 QAEDIRGTVKWYNATKGFGFITPDSGGKDIFVHASALERSH----LQSLDEGQTINVKVV 195
Query: 65 VGKKDIEAINVT 76
G+K EA +T
Sbjct: 196 QGQKGPEAAEIT 207
>gi|443701121|gb|ELT99730.1| hypothetical protein CAPTEDRAFT_50229, partial [Capitella teleta]
Length = 103
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 51/82 (62%)
Query: 5 EIHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIG 64
E V G VK+++ +RG+GFI D +ED FVH +IVK NP +F +S+G GE V+F++
Sbjct: 1 ERSKVTGEVKWFNLRRGYGFINTNDTQEDAFVHHKAIVKNNPHQFLRSVGDGEKVEFDVV 60
Query: 65 VGKKDIEAINVTGPNGIPVQGA 86
+ E NVT P VQG+
Sbjct: 61 KAEWGNEVANVTRPEEESVQGS 82
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 50/78 (64%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ +RG+GFI D +ED FVH +IVK NP +F +S+G GE V+F++ +
Sbjct: 5 VTGEVKWFNLRRGYGFINTNDTQEDAFVHHKAIVKNNPHQFLRSVGDGEKVEFDVVKAEW 64
Query: 170 DIEAINVTGPNGIPVQGA 187
E NVT P VQG+
Sbjct: 65 GNEVANVTRPEEESVQGS 82
>gi|393719798|ref|ZP_10339725.1| cold-shock DNA-binding domain-containing protein [Sphingomonas
echinoides ATCC 14820]
Length = 266
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 90/188 (47%), Gaps = 41/188 (21%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLG-EIVDFNIGVGKKD 69
G+VKF++ ++GFGF+ R D ED+FVH S++ + + LG +VD + D
Sbjct: 96 GVVKFFNGQKGFGFVVRDDGGEDVFVHISAVEQAGLTGLAEGQPLGFTLVDRGGRISATD 155
Query: 70 I----EAINVT-------------GPNGIPVQGAPKS--SSETVSGTYRNDSFFPAVHTV 110
+ E + VT P G GAP+ + E +GT
Sbjct: 156 LKIDGEPLPVTDRGPPRDRDAGPGAPRGAAPGGAPQRQLTGEKATGT------------- 202
Query: 111 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK- 169
VKF+++ +GFGFI R D + D FVH S++ + SL G+ ++F + V ++
Sbjct: 203 ---VKFFNAMKGFGFIQRDDGQPDAFVHISAVERGG----MTSLNEGDRLEFELEVDRRG 255
Query: 170 DIEAINVT 177
+ A+N+T
Sbjct: 256 KMAAVNLT 263
>gi|380807783|gb|AFE75767.1| DNA-binding protein A isoform b, partial [Macaca mulatta]
Length = 79
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 45/55 (81%)
Query: 32 EDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGA 86
ED+FVH+++I K NP+K+ +S+G GE V+F++ G+K EA NVTGP+G+PV+G+
Sbjct: 1 EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGS 55
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 45/55 (81%)
Query: 133 EDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGA 187
ED+FVH+++I K NP+K+ +S+G GE V+F++ G+K EA NVTGP+G+PV+G+
Sbjct: 1 EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGS 55
>gi|379057753|ref|ZP_09848279.1| cold-shock DNA-binding domain-containing protein [Serinicoccus
profundi MCCC 1A05965]
Length = 314
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 67/133 (50%), Gaps = 24/133 (18%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 70
G V+++D+ RGFGFI + ED++VH S I+ + K + G++V+F IG G +
Sbjct: 4 GTVRWFDADRGFGFIALGEEAEDLYVHASEIISDDAMKLLRE---GQVVEFEIGEGDR-- 58
Query: 71 EAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFITRLD 130
P++ S V+ D+ V G V +Y+ +G+GFIT
Sbjct: 59 ---------------GPQARSVRVTADRSADAPL----GVLGTVSWYEPGKGYGFITPDG 99
Query: 131 NKEDIFVHKSSIV 143
++IF+H S+IV
Sbjct: 100 GGDEIFLHSSAIV 112
Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 69/133 (51%), Gaps = 8/133 (6%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 70
G V ++D +GFGFIT D+FVH ++ P L G+ V +++ G++
Sbjct: 158 GTVSWFDEDKGFGFITPESGGPDVFVHVRALADGLP-----VLDEGDRVTYDVVEGERGP 212
Query: 71 EAINVTGPNGIPVQGAP-KSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFITRL 129
+A +V +G +G P +S+S SG +S P +G+V YD +RGFGFIT
Sbjct: 213 QARDVRLVHGSAPRGGPARSTSRGRSGP--RESSGPPARGGQGVVVRYDPERGFGFITPD 270
Query: 130 DNKEDIFVHKSSI 142
D+FVH S +
Sbjct: 271 AGGADLFVHVSVL 283
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 79/177 (44%), Gaps = 24/177 (13%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G V +Y+ +G+GFIT ++IF+H S+IV + G+ V F + G+K
Sbjct: 79 VLGTVSWYEPGKGYGFITPDGGGDEIFLHSSAIVGDG------VVSEGQRVAFLVVDGEK 132
Query: 69 DIEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFITR 128
+A ++ +P+ + +ET G G V ++D +GFGFIT
Sbjct: 133 GPQADHL-----LPLGDQAEQQAETSDGA-------------DGTVSWFDEDKGFGFITP 174
Query: 129 LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQ 185
D+FVH ++ P ++V+ G +D+ ++ + P G P +
Sbjct: 175 ESGGPDVFVHVRALADGLPVLDEGDRVTYDVVEGERGPQARDVRLVHGSAPRGGPAR 231
Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 171
G V+++D+ RGFGFI + ED++VH S I+ + K + G++V+F IG G +
Sbjct: 4 GTVRWFDADRGFGFIALGEEAEDLYVHASEIISDDAMKLLRE---GQVVEFEIGEGDRGP 60
Query: 172 EAINV 176
+A +V
Sbjct: 61 QARSV 65
>gi|269793785|ref|YP_003313240.1| cold shock domain-containing protein CspD [Sanguibacter keddieii
DSM 10542]
gi|269095970|gb|ACZ20406.1| cold shock domain protein CspD [Sanguibacter keddieii DSM 10542]
Length = 317
Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 66/134 (49%), Gaps = 23/134 (17%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 69
+G V+++D++RGFGF+ D +D+FVH S IV + QSL G+ V+F IG G +
Sbjct: 3 QGTVRWFDAERGFGFLALDDGADDLFVHASEIVGNDDGT--QSLREGQSVEFEIGEGDR- 59
Query: 70 IEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFITRL 129
GP VQ S+ E G G V +Y+ +G+GF+T
Sbjct: 60 -------GPQARRVQITGDSAVEAALGQL-------------GTVTWYEPTKGYGFVTPD 99
Query: 130 DNKEDIFVHKSSIV 143
+IF H S+IV
Sbjct: 100 GGGAEIFAHSSAIV 113
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 64/132 (48%), Gaps = 12/132 (9%)
Query: 13 VKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEA 72
V +YD+ +GFGF+T + D FVH S+ + L G+ V F++ G + +A
Sbjct: 165 VSWYDAGKGFGFVTPDSGEPDAFVHARSLAGGATE-----LVEGDRVSFSVVPGDRGPQA 219
Query: 73 --INVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFITRLD 130
+ V G G + AP G+ R ++ G+V YD++RGFGFIT
Sbjct: 220 QDVRVVGGTGRGARSAPGRG-----GSQRPEASRAPARGGEGVVARYDAERGFGFITPDS 274
Query: 131 NKEDIFVHKSSI 142
D+FVH S +
Sbjct: 275 GGPDLFVHVSVV 286
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 4/74 (5%)
Query: 111 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 170
+G V+++D++RGFGF+ D +D+FVH S IV + QSL G+ V+F IG G +
Sbjct: 3 QGTVRWFDAERGFGFLALDDGADDLFVHASEIVGNDDGT--QSLREGQSVEFEIGEGDRG 60
Query: 171 IEA--INVTGPNGI 182
+A + +TG + +
Sbjct: 61 PQARRVQITGDSAV 74
Score = 36.2 bits (82), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSI 41
G+V YD++RGFGFIT D+FVH S +
Sbjct: 256 GVVARYDAERGFGFITPDSGGPDLFVHVSVV 286
>gi|269955008|ref|YP_003324797.1| cold-shock DNA-binding domain-containing protein [Xylanimonas
cellulosilytica DSM 15894]
gi|269303689|gb|ACZ29239.1| cold-shock DNA-binding domain protein [Xylanimonas cellulosilytica
DSM 15894]
Length = 311
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 69/134 (51%), Gaps = 24/134 (17%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 69
+G V+++D++RGFGFI + ED+FVH S IV + + + G+ V+F +G G +
Sbjct: 3 QGTVRWFDAERGFGFIDVGNEAEDLFVHASEIVGDDGPRLLRE---GQAVEFEVGEGDR- 58
Query: 70 IEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFITRL 129
P++ V+G D+ V G V +Y+ +G+GF+T
Sbjct: 59 ----------------GPQARRVRVTGDRAPDAPL----GVLGTVSWYEPAKGYGFVTPD 98
Query: 130 DNKEDIFVHKSSIV 143
++++FVH S+IV
Sbjct: 99 GGRDEVFVHSSAIV 112
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 57/132 (43%), Gaps = 9/132 (6%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 70
G V +YD +GFGF+ ED+FVH S++ + F + ++V+ G D+
Sbjct: 158 GTVSWYDDTKGFGFVAPDSGGEDVFVHVSALGPGLTELFEGARVTYDVVEGERGPNAHDV 217
Query: 71 EAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFITRLD 130
+ V+G S G R G V YD++RGFGFIT
Sbjct: 218 RLVRVSGGARAATDRGRPSRPAASGGPVRGGE---------GTVARYDAERGFGFITPDA 268
Query: 131 NKEDIFVHKSSI 142
D+FVH S +
Sbjct: 269 GGADLFVHVSVL 280
Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 78/170 (45%), Gaps = 24/170 (14%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G V +Y+ +G+GF+T ++++FVH S+IV + G+ V F + G++
Sbjct: 79 VLGTVSWYEPAKGYGFVTPDGGRDEVFVHSSAIVGGG------VISEGQRVAFLVVEGER 132
Query: 69 DIEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFITR 128
++A ++ +P+ S+ G G V +YD +GFGF+
Sbjct: 133 GLQADHL-----LPLGSQAARSAGPSDGA-------------DGTVSWYDDTKGFGFVAP 174
Query: 129 LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTG 178
ED+FVH S++ + F + ++V+ G D+ + V+G
Sbjct: 175 DSGGEDVFVHVSALGPGLTELFEGARVTYDVVEGERGPNAHDVRLVRVSG 224
>gi|397676826|ref|YP_006518364.1| cold-shock protein [Zymomonas mobilis subsp. mobilis ATCC 29191]
gi|395397515|gb|AFN56842.1| cold-shock DNA-binding domain protein [Zymomonas mobilis subsp.
mobilis ATCC 29191]
Length = 278
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 84/171 (49%), Gaps = 13/171 (7%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 70
G+VKF++S++GFGFI R D ED+FVH S++ + L G+ + F + +
Sbjct: 113 GVVKFFNSQKGFGFIVRDDGGEDVFVHISAVEQAG----LTGLAEGQPLSFTLVDRGGRV 168
Query: 71 EAINVTGPNGIPV---QGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFIT 127
A N+ G G P+ + AP G+ G VKF+++ +GFGFI
Sbjct: 169 SATNL-GIEGEPLPITESAPAPRGGEFGGSRGGPQRQLTGEKSSGTVKFFNAMKGFGFIQ 227
Query: 128 RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK-DIEAINVT 177
R D + D FVH S++ + SL G+ + F + V ++ A+N+
Sbjct: 228 RDDGQPDAFVHISAVERAG----LPSLNEGDRLSFELEVDRRGKYAAVNLA 274
>gi|421849133|ref|ZP_16282117.1| transcriptional regulator cold shock protein [Acetobacter
pasteurianus NBRC 101655]
gi|421852135|ref|ZP_16284826.1| transcriptional regulator cold shock protein [Acetobacter
pasteurianus subsp. pasteurianus LMG 1262 = NBRC 106471]
gi|371460157|dbj|GAB27320.1| transcriptional regulator cold shock protein [Acetobacter
pasteurianus NBRC 101655]
gi|371479826|dbj|GAB30029.1| transcriptional regulator cold shock protein [Acetobacter
pasteurianus subsp. pasteurianus LMG 1262 = NBRC 106471]
Length = 203
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 81/174 (46%), Gaps = 15/174 (8%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V VK+++S++GFGF+ D D+F+H +++ + Q + G + IG G K
Sbjct: 38 VGATVKWFNSEKGFGFVELADGTGDVFLHANALSQAG----HQGVSPGATLVVRIGQGPK 93
Query: 69 DIEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPA-----VHTVRGIVKFYDSKRGF 123
+ V + Q P+ G + PA RG VK+Y+S +GF
Sbjct: 94 GRQVAEVISVDESTAQ--PERPRAPRPGFGSRPAGRPAPDLSMAEDTRGTVKWYNSVKGF 151
Query: 124 GFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVT 177
GFIT +DIFVH S++ + +L G+ V+ + G+K EA V+
Sbjct: 152 GFITPESGGKDIFVHASALERSG----LSALNEGQGVNVKVVQGQKGPEAAEVS 201
>gi|384254311|gb|EIE27785.1| CSD-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 167
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 51/85 (60%), Gaps = 5/85 (5%)
Query: 5 EIHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIG 64
E G VK+++S +GFGFIT D ED+FVH++SI+ F+SL GE V+F +
Sbjct: 3 EASKATGTVKWFNSTKGFGFITPDDGGEDLFVHQTSIITDG----FRSLAEGEQVEFYVE 58
Query: 65 VGKKD-IEAINVTGPNGIPVQGAPK 88
G +A+ VTGP G P QG P+
Sbjct: 59 SGDDGRTKAVQVTGPGGAPPQGQPR 83
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 50/79 (63%), Gaps = 5/79 (6%)
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD- 170
G VK+++S +GFGFIT D ED+FVH++SI+ F+SL GE V+F + G
Sbjct: 9 GTVKWFNSTKGFGFITPDDGGEDLFVHQTSIITDG----FRSLAEGEQVEFYVESGDDGR 64
Query: 171 IEAINVTGPNGIPVQGAPK 189
+A+ VTGP G P QG P+
Sbjct: 65 TKAVQVTGPGGAPPQGQPR 83
>gi|384411761|ref|YP_005621126.1| cold-shock protein [Zymomonas mobilis subsp. mobilis ATCC 10988]
gi|335932135|gb|AEH62675.1| cold-shock DNA-binding domain protein [Zymomonas mobilis subsp.
mobilis ATCC 10988]
Length = 290
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 84/171 (49%), Gaps = 13/171 (7%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 70
G+VKF++S++GFGF+ R D ED+FVH S++ + L G+ + F + +
Sbjct: 125 GVVKFFNSQKGFGFVVRDDGGEDVFVHISAVEQAG----LTGLAEGQPLSFTLVDRGGRV 180
Query: 71 EAINVTGPNGIPV---QGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFIT 127
A N+ G G P+ + AP G+ G VKF+++ +GFGFI
Sbjct: 181 SATNL-GIEGEPLPITESAPAPRGGEFGGSRGGPQRQLTGEKSSGTVKFFNAMKGFGFIQ 239
Query: 128 RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK-DIEAINVT 177
R D + D FVH S++ + SL G+ + F + V ++ A+N+
Sbjct: 240 RDDGQPDAFVHISAVERAG----LPSLNEGDRLSFELEVDRRGKYAAVNLA 286
>gi|260753178|ref|YP_003226071.1| cold-shock DNA-binding domain-containing protein [Zymomonas mobilis
subsp. mobilis NCIMB 11163]
gi|258552541|gb|ACV75487.1| cold-shock DNA-binding domain protein [Zymomonas mobilis subsp.
mobilis NCIMB 11163]
Length = 303
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 84/171 (49%), Gaps = 13/171 (7%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 70
G+VKF++S++GFGF+ R D ED+FVH S++ + L G+ + F + +
Sbjct: 138 GVVKFFNSQKGFGFVVRDDGGEDVFVHISAVEQAG----LTGLAEGQPLSFTLVDRGGRV 193
Query: 71 EAINVTGPNGIPV---QGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFIT 127
A N+ G G P+ + AP G+ G VKF+++ +GFGFI
Sbjct: 194 SATNL-GIEGEPLPITESAPAPRGGEFGGSRGGPQRQLTGEKSSGTVKFFNAMKGFGFIQ 252
Query: 128 RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK-DIEAINVT 177
R D + D FVH S++ + SL G+ + F + V ++ A+N+
Sbjct: 253 RDDGQPDAFVHISAVERAG----LPSLNEGDRLSFELEVDRRGKYAAVNLA 299
>gi|443724408|gb|ELU12428.1| hypothetical protein CAPTEDRAFT_201202 [Capitella teleta]
Length = 461
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 44/55 (80%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
V G+VK+++ +RG+GFI R D +ED+FVH ++IVK NP K+ +S+G GE V+F++
Sbjct: 354 VTGVVKWFNVRRGYGFINRDDMQEDVFVHHTAIVKNNPHKYLRSVGDGEKVEFDV 408
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 44/55 (80%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 164
V G+VK+++ +RG+GFI R D +ED+FVH ++IVK NP K+ +S+G GE V+F++
Sbjct: 354 VTGVVKWFNVRRGYGFINRDDMQEDVFVHHTAIVKNNPHKYLRSVGDGEKVEFDV 408
>gi|71679965|gb|AAI00455.1| Ybx2 protein [Mus musculus]
Length = 171
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 53/82 (64%), Gaps = 13/82 (15%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +S+G GE V+F++
Sbjct: 95 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDV----- 149
Query: 69 DIEAINVTGPNGIPVQGAPKSS 90
+E + IP Q P+++
Sbjct: 150 -VEGV-------IPTQRTPRAT 163
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 43/55 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 164
V G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +S+G GE V+F++
Sbjct: 95 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDV 149
>gi|339253316|ref|XP_003371881.1| DNA-binding protein A [Trichinella spiralis]
gi|316967791|gb|EFV52174.1| DNA-binding protein A [Trichinella spiralis]
Length = 377
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 63/139 (45%), Gaps = 46/139 (33%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHK------------------------------ 38
++G VK+++ K G+GFI RLD EDIFVH+
Sbjct: 121 IKGKVKWFNVKNGYGFINRLDTGEDIFVHQVSCSSESLFVCRRRNALVRLGLPAGDGTRC 180
Query: 39 ----------------SSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIP 82
++I+K NP KF +SLG E+V+F++ G K EA NVTGP G P
Sbjct: 181 TGSAVWMVNKLGWANSTAIIKNNPNKFLRSLGDEEMVEFDVVDGSKGPEAANVTGPEGQP 240
Query: 83 VQGAPKSSSETVSGTYRND 101
V G+ ++ + R D
Sbjct: 241 VVGSKYAADRALHYRGRRD 259
Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 58/124 (46%), Gaps = 46/124 (37%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHK------------------------------ 139
++G VK+++ K G+GFI RLD EDIFVH+
Sbjct: 121 IKGKVKWFNVKNGYGFINRLDTGEDIFVHQVSCSSESLFVCRRRNALVRLGLPAGDGTRC 180
Query: 140 ----------------SSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIP 183
++I+K NP KF +SLG E+V+F++ G K EA NVTGP G P
Sbjct: 181 TGSAVWMVNKLGWANSTAIIKNNPNKFLRSLGDEEMVEFDVVDGSKGPEAANVTGPEGQP 240
Query: 184 VQGA 187
V G+
Sbjct: 241 VVGS 244
>gi|312083329|ref|XP_003143816.1| hypothetical protein LOAG_08235 [Loa loa]
gi|307761020|gb|EFO20254.1| hypothetical protein LOAG_08235 [Loa loa]
Length = 310
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 53/79 (67%), Gaps = 1/79 (1%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFF-QSLGLGEIVDFNIGVGK 67
V+G VK+Y + +GFI R D D+FVH+++I K K++ ++LG GE V F+I GK
Sbjct: 76 VKGRVKWYSVRFHYGFIARDDKGNDVFVHQTAITKSRIIKYYLRTLGDGEEVLFDIVEGK 135
Query: 68 KDIEAINVTGPNGIPVQGA 86
+ EA NVTGPNG V+G+
Sbjct: 136 QGPEAANVTGPNGAEVRGS 154
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 53/79 (67%), Gaps = 1/79 (1%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFF-QSLGLGEIVDFNIGVGK 168
V+G VK+Y + +GFI R D D+FVH+++I K K++ ++LG GE V F+I GK
Sbjct: 76 VKGRVKWYSVRFHYGFIARDDKGNDVFVHQTAITKSRIIKYYLRTLGDGEEVLFDIVEGK 135
Query: 169 KDIEAINVTGPNGIPVQGA 187
+ EA NVTGPNG V+G+
Sbjct: 136 QGPEAANVTGPNGAEVRGS 154
>gi|283856223|ref|YP_162014.2| cold-shock DNA-binding domain-containing protein [Zymomonas mobilis
subsp. mobilis ZM4]
gi|283775218|gb|AAV88903.2| cold-shock DNA-binding domain protein [Zymomonas mobilis subsp.
mobilis ZM4]
Length = 258
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 80/162 (49%), Gaps = 12/162 (7%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 70
G+VKF++S++GFGF+ R D ED+FVH S++ + L G+ + F + +
Sbjct: 93 GVVKFFNSQKGFGFVVRDDGGEDVFVHISAVEQAG----LTGLAEGQPLSFTLVDRGGRV 148
Query: 71 EAINVTGPNGIPV---QGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFIT 127
A N+ G G P+ + AP G+ G VKF+++ +GFGFI
Sbjct: 149 SATNL-GIEGEPLPITESAPAPRGGEFGGSRGGPQRQLTGEKSSGTVKFFNAMKGFGFIQ 207
Query: 128 RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
R D + D FVH S++ + SL G+ + F + V ++
Sbjct: 208 RDDGQPDAFVHISAVERAG----LPSLNEGDRLSFELEVDRR 245
>gi|258542278|ref|YP_003187711.1| transcriptional regulator cold shock protein [Acetobacter
pasteurianus IFO 3283-01]
gi|329113442|ref|ZP_08242223.1| Cold shock-like protein CspE [Acetobacter pomorum DM001]
gi|384042199|ref|YP_005480943.1| transcriptional regulator cold shock protein [Acetobacter
pasteurianus IFO 3283-12]
gi|384050716|ref|YP_005477779.1| transcriptional regulator cold shock protein [Acetobacter
pasteurianus IFO 3283-03]
gi|384053824|ref|YP_005486918.1| transcriptional regulator cold shock protein [Acetobacter
pasteurianus IFO 3283-07]
gi|384057058|ref|YP_005489725.1| transcriptional regulator cold shock protein [Acetobacter
pasteurianus IFO 3283-22]
gi|384059699|ref|YP_005498827.1| transcriptional regulator cold shock protein [Acetobacter
pasteurianus IFO 3283-26]
gi|384062991|ref|YP_005483633.1| transcriptional regulator cold shock protein [Acetobacter
pasteurianus IFO 3283-32]
gi|384119067|ref|YP_005501691.1| transcriptional regulator cold shock protein [Acetobacter
pasteurianus IFO 3283-01-42C]
gi|256633356|dbj|BAH99331.1| transcriptional regulator cold shock protein [Acetobacter
pasteurianus IFO 3283-01]
gi|256636415|dbj|BAI02384.1| transcriptional regulator cold shock protein [Acetobacter
pasteurianus IFO 3283-03]
gi|256639468|dbj|BAI05430.1| transcriptional regulator cold shock protein [Acetobacter
pasteurianus IFO 3283-07]
gi|256642524|dbj|BAI08479.1| transcriptional regulator cold shock protein [Acetobacter
pasteurianus IFO 3283-22]
gi|256645579|dbj|BAI11527.1| transcriptional regulator cold shock protein [Acetobacter
pasteurianus IFO 3283-26]
gi|256648632|dbj|BAI14573.1| transcriptional regulator cold shock protein [Acetobacter
pasteurianus IFO 3283-32]
gi|256651685|dbj|BAI17619.1| transcriptional regulator cold shock protein [Acetobacter
pasteurianus IFO 3283-01-42C]
gi|256654676|dbj|BAI20603.1| transcriptional regulator cold shock protein [Acetobacter
pasteurianus IFO 3283-12]
gi|326697267|gb|EGE48927.1| Cold shock-like protein CspE [Acetobacter pomorum DM001]
Length = 225
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 81/174 (46%), Gaps = 15/174 (8%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V VK+++S++GFGF+ D D+F+H +++ + Q + G + IG G K
Sbjct: 60 VGATVKWFNSEKGFGFVELADGTGDVFLHANALSQAG----HQGVSPGATLVVRIGQGPK 115
Query: 69 DIEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPA-----VHTVRGIVKFYDSKRGF 123
+ V + Q P+ G + PA RG VK+Y+S +GF
Sbjct: 116 GRQVAEVISVDESTAQ--PERPRAPRPGFGSRPAGRPAPDLSMAEDTRGTVKWYNSVKGF 173
Query: 124 GFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVT 177
GFIT +DIFVH S++ + +L G+ V+ + G+K EA V+
Sbjct: 174 GFITPESGGKDIFVHASALERSG----LSALNEGQGVNVKVVQGQKGPEAAEVS 223
>gi|17507385|ref|NP_491645.1| Protein CEY-2 [Caenorhabditis elegans]
gi|373254598|emb|CCD71325.1| Protein CEY-2 [Caenorhabditis elegans]
Length = 267
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 54/79 (68%), Gaps = 1/79 (1%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFF-QSLGLGEIVDFNIGVGK 67
++G VK+Y R +GFI+R D ++DIFVH+++I K +KF+ ++LG E V F++ GK
Sbjct: 66 LQGKVKWYSVLRRYGFISRNDGEKDIFVHQTAIAKSATEKFYLRTLGDDEEVLFDLVEGK 125
Query: 68 KDIEAINVTGPNGIPVQGA 86
EA NVTGPNG V G+
Sbjct: 126 NGPEAANVTGPNGDNVIGS 144
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 54/79 (68%), Gaps = 1/79 (1%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFF-QSLGLGEIVDFNIGVGK 168
++G VK+Y R +GFI+R D ++DIFVH+++I K +KF+ ++LG E V F++ GK
Sbjct: 66 LQGKVKWYSVLRRYGFISRNDGEKDIFVHQTAIAKSATEKFYLRTLGDDEEVLFDLVEGK 125
Query: 169 KDIEAINVTGPNGIPVQGA 187
EA NVTGPNG V G+
Sbjct: 126 NGPEAANVTGPNGDNVIGS 144
>gi|356507945|ref|XP_003522723.1| PREDICTED: uncharacterized protein LOC100820359 [Glycine max]
Length = 194
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 55/86 (63%), Gaps = 5/86 (5%)
Query: 1 MTKFEIHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVD 60
M++ E V G VK++D ++GFGFIT D+ E+ FVH+SSI F+SL LGE V+
Sbjct: 1 MSESEKQRVTGKVKWFDDQKGFGFITTDDSGEEFFVHQSSIRSDG----FRSLALGESVE 56
Query: 61 FNIGVGKK-DIEAINVTGPNGIPVQG 85
F I + +A++VTGP+ PVQG
Sbjct: 57 FLIDSDPEGRTKAVDVTGPDESPVQG 82
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 51/78 (65%), Gaps = 5/78 (6%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK++D ++GFGFIT D+ E+ FVH+SSI F+SL LGE V+F I +
Sbjct: 9 VTGKVKWFDDQKGFGFITTDDSGEEFFVHQSSIRSDG----FRSLALGESVEFLIDSDPE 64
Query: 170 -DIEAINVTGPNGIPVQG 186
+A++VTGP+ PVQG
Sbjct: 65 GRTKAVDVTGPDESPVQG 82
>gi|336322064|ref|YP_004602032.1| cold-shock DNA-binding domain protein [[Cellvibrio] gilvus ATCC
13127]
gi|336105645|gb|AEI13464.1| cold-shock DNA-binding domain protein [[Cellvibrio] gilvus ATCC
13127]
Length = 315
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 67/134 (50%), Gaps = 24/134 (17%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 69
+G V+++D++RGFGF+ D +D+FVH S +V + + G+ V+F +G G +
Sbjct: 3 QGTVRWFDAERGFGFLAFDDGSDDLFVHASEVVNDDGSNLLRE---GQAVEFEVGEGAR- 58
Query: 70 IEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFITRL 129
P++ V+G + D A V G V +Y+ +G+GF+T
Sbjct: 59 ----------------GPQARRVRVTGDHAAD----APVGVLGTVSWYEPGKGYGFVTPD 98
Query: 130 DNKEDIFVHKSSIV 143
+IFVH S+IV
Sbjct: 99 GGGAEIFVHSSAIV 112
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 66/137 (48%), Gaps = 14/137 (10%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 70
G V +YD+++GFGF+T ED+F H S++ + L G+ V F++ +
Sbjct: 157 GTVTWYDAEKGFGFVTPDAGGEDVFAHASALAGGATE-----LVEGDRVTFDVAESDRGP 211
Query: 71 EAINVT-----GPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGF 125
+A NV G P +G G R+D+ PA G+V YD +RGFGF
Sbjct: 212 QARNVRLVRGHGHRSAPARGRAGHGGRPAPGR-RSDA--PA-RGGEGVVVRYDDERGFGF 267
Query: 126 ITRLDNKEDIFVHKSSI 142
I +D+FVH S I
Sbjct: 268 IAPDAGGDDLFVHVSVI 284
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 78/168 (46%), Gaps = 30/168 (17%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G V +Y+ +G+GF+T +IFVH S+IV + G+ V F + G+K
Sbjct: 79 VLGTVSWYEPGKGYGFVTPDGGGAEIFVHSSAIVVGG------VITEGQRVAFLVVEGEK 132
Query: 69 DIEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFITR 128
+A ++ P G +++S+ GT V +YD+++GFGF+T
Sbjct: 133 GPQADHLL-PLG--ADAGRQAASDGADGT----------------VTWYDAEKGFGFVTP 173
Query: 129 LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINV 176
ED+F H S++ + L G+ V F++ + +A NV
Sbjct: 174 DAGGEDVFAHASALAGGATE-----LVEGDRVTFDVAESDRGPQARNV 216
>gi|402892066|ref|XP_003909243.1| PREDICTED: LOW QUALITY PROTEIN: B box-binding protein-like [Papio
anubis]
Length = 359
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 47/77 (61%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G +K + + + F R D KED FV ++++ K NP+K + +G G V+FN+ G++
Sbjct: 167 VLGTIKCFSVRNRYSFTKRNDTKEDAFVQQTAVKKNNPRKHLRRVGDGMTVEFNVVXGEE 226
Query: 69 DIEAINVTGPNGIPVQG 85
A +VTGP GIP QG
Sbjct: 227 GPXAASVTGPGGIPSQG 243
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 47/77 (61%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G +K + + + F R D KED FV ++++ K NP+K + +G G V+FN+ G++
Sbjct: 167 VLGTIKCFSVRNRYSFTKRNDTKEDAFVQQTAVKKNNPRKHLRRVGDGMTVEFNVVXGEE 226
Query: 170 DIEAINVTGPNGIPVQG 186
A +VTGP GIP QG
Sbjct: 227 GPXAASVTGPGGIPSQG 243
>gi|296116126|ref|ZP_06834744.1| cold shock protein [Gluconacetobacter hansenii ATCC 23769]
gi|295977232|gb|EFG83992.1| cold shock protein [Gluconacetobacter hansenii ATCC 23769]
Length = 208
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 85/173 (49%), Gaps = 13/173 (7%)
Query: 13 VKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEA 72
VK+++S++GFGF+ D D+F+H ++ +NP F +++ G + IG G K +
Sbjct: 39 VKWFNSEKGFGFVELSDGSGDVFLHANA---LNPTGF-ETVSPGSTLVVRIGQGPKGRQV 94
Query: 73 ---INVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPA-----VHTVRGIVKFYDSKRGFG 124
++V P + + G S PA +RGIVK+Y++ +GFG
Sbjct: 95 AAVVSVDESTAQPERPRGFGGAPRAGGGGFARSGRPAPDLSQAQDMRGIVKWYNATKGFG 154
Query: 125 FITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVT 177
FIT +DIFVH S++ + SL G+ + + G+K EA ++
Sbjct: 155 FITPESGGKDIFVHASALERSG-LTGLTSLSEGQTANVQVVEGQKGPEAAAIS 206
Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 5 EIHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIG 64
+ +RGIVK+Y++ +GFGFIT +DIFVH S++ + SL G+ + +
Sbjct: 136 QAQDMRGIVKWYNATKGFGFITPESGGKDIFVHASALERSG-LTGLTSLSEGQTANVQVV 194
Query: 65 VGKKDIEAINVT 76
G+K EA ++
Sbjct: 195 EGQKGPEAAAIS 206
>gi|170572609|ref|XP_001892171.1| 'Cold-shock' DNA-binding domain containing protein [Brugia
malayi]
gi|158602705|gb|EDP39010.1| 'Cold-shock' DNA-binding domain containing protein [Brugia
malayi]
Length = 244
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 54/80 (67%), Gaps = 2/80 (2%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNK-EDIFVHKSSIVKMNPKKFF-QSLGLGEIVDFNIGVG 66
V+G VK+Y + +GFI R DNK D+FVH+++I K K++ ++LG GE V F+I G
Sbjct: 6 VKGKVKWYSVRYHYGFIARDDNKGNDVFVHQTAIAKSRIIKYYLRTLGDGEEVLFDIVQG 65
Query: 67 KKDIEAINVTGPNGIPVQGA 86
K+ EA NVTGPN V+G+
Sbjct: 66 KQGPEAANVTGPNSTEVRGS 85
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 54/80 (67%), Gaps = 2/80 (2%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNK-EDIFVHKSSIVKMNPKKFF-QSLGLGEIVDFNIGVG 167
V+G VK+Y + +GFI R DNK D+FVH+++I K K++ ++LG GE V F+I G
Sbjct: 6 VKGKVKWYSVRYHYGFIARDDNKGNDVFVHQTAIAKSRIIKYYLRTLGDGEEVLFDIVQG 65
Query: 168 KKDIEAINVTGPNGIPVQGA 187
K+ EA NVTGPN V+G+
Sbjct: 66 KQGPEAANVTGPNSTEVRGS 85
>gi|296284922|ref|ZP_06862920.1| cold shock protein [Citromicrobium bathyomarinum JL354]
Length = 270
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 95/187 (50%), Gaps = 23/187 (12%)
Query: 6 IHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI-- 63
+ T +G VKF++ ++GFGFI + +D+FVH S++ + + L G+ ++FN+
Sbjct: 99 VGTGKGQVKFFNGQKGFGFIQQEGGGDDVFVHISAVERAG----LEGLAEGQELEFNLVD 154
Query: 64 GVGKKDIEAINVTGPNGIPVQG----APKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDS 119
GK + + V G + IPV G AP+ +G T G VKF++S
Sbjct: 155 RGGKISAQDLQVVG-DVIPVTGGAVAAPRDGGPGAAGGAPRRELTGEKAT--GTVKFFNS 211
Query: 120 KRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK-DIEAINVTG 178
+GFGF+ R D + D FVH S++ + + GE +F++ V ++ A+N+
Sbjct: 212 MKGFGFLVRDDGQPDAFVHISAVERSG----LSQINEGERYEFDLEVDRRGKYSAVNL-- 265
Query: 179 PNGIPVQ 185
+PVQ
Sbjct: 266 ---VPVQ 269
>gi|349700165|ref|ZP_08901794.1| cold shock protein [Gluconacetobacter europaeus LMG 18494]
Length = 226
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 83/177 (46%), Gaps = 16/177 (9%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+ VK+++S++GFGF+ D D+F+H ++ +NP ++ G + IG G K
Sbjct: 56 ISATVKWFNSEKGFGFVELSDGSGDVFLHANA---LNPTGH-ATVAPGTTLVVQIGQGPK 111
Query: 69 DIEAINVTGPNGIPVQ--------GAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSK 120
+ NV + Q GA + S + R +RG VK+Y++
Sbjct: 112 GRQVANVVSVDESTAQPERPRAAFGAAPGARGGFSRSGRPAPDLSHAQDMRGTVKWYNAT 171
Query: 121 RGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVT 177
+GFGFIT + +DIFVH S++ + L G+ + + G+K EA ++
Sbjct: 172 KGFGFITPENGGKDIFVHASALERSG----LSGLTEGQTANVQVVEGQKGPEAAALS 224
>gi|324518130|gb|ADY47012.1| Y-box-binding protein 2-B [Ascaris suum]
Length = 323
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 55/80 (68%), Gaps = 2/80 (2%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNK-EDIFVHKSSIVKMNPKKFF-QSLGLGEIVDFNIGVG 66
V G VK+Y + +GFI R D++ D+FVH+++I K K++ ++LG GE V F+I G
Sbjct: 47 VTGKVKWYSVRYHYGFIARDDDRANDVFVHQTAIAKSRIVKYYLRTLGDGEEVVFDIVEG 106
Query: 67 KKDIEAINVTGPNGIPVQGA 86
K+ EA NVTGP+G PV+G+
Sbjct: 107 KQGPEAANVTGPDGAPVRGS 126
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 55/80 (68%), Gaps = 2/80 (2%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNK-EDIFVHKSSIVKMNPKKFF-QSLGLGEIVDFNIGVG 167
V G VK+Y + +GFI R D++ D+FVH+++I K K++ ++LG GE V F+I G
Sbjct: 47 VTGKVKWYSVRYHYGFIARDDDRANDVFVHQTAIAKSRIVKYYLRTLGDGEEVVFDIVEG 106
Query: 168 KKDIEAINVTGPNGIPVQGA 187
K+ EA NVTGP+G PV+G+
Sbjct: 107 KQGPEAANVTGPDGAPVRGS 126
>gi|302800247|ref|XP_002981881.1| hypothetical protein SELMODRAFT_154869 [Selaginella
moellendorffii]
gi|300150323|gb|EFJ16974.1| hypothetical protein SELMODRAFT_154869 [Selaginella
moellendorffii]
Length = 182
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 54/80 (67%), Gaps = 5/80 (6%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGK-KD 69
G VK+++ +GFGFIT D E++FVH+S+I F+SL GEIV+F++ G+ +
Sbjct: 11 GKVKWFNVTKGFGFITPDDGSEELFVHQSAIFAEG----FRSLREGEIVEFSVEQGEDQR 66
Query: 70 IEAINVTGPNGIPVQGAPKS 89
+ A +VTGP+G VQGAP S
Sbjct: 67 MRAADVTGPDGSHVQGAPSS 86
Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 55/85 (64%), Gaps = 5/85 (5%)
Query: 105 PAVHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 164
PA G VK+++ +GFGFIT D E++FVH+S+I F+SL GEIV+F++
Sbjct: 4 PADAKRTGKVKWFNVTKGFGFITPDDGSEELFVHQSAIFAEG----FRSLREGEIVEFSV 59
Query: 165 GVGK-KDIEAINVTGPNGIPVQGAP 188
G+ + + A +VTGP+G VQGAP
Sbjct: 60 EQGEDQRMRAADVTGPDGSHVQGAP 84
>gi|225431120|ref|XP_002266115.1| PREDICTED: glycine-rich protein 2b-like [Vitis vinifera]
Length = 241
Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 54/79 (68%), Gaps = 5/79 (6%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD- 69
G+V+++ ++GFGFIT + ED+FVH+SSI F+SLG GE V+F I +G+
Sbjct: 8 GVVRWFSDQKGFGFITPNEGGEDLFVHQSSI----KSDGFRSLGEGETVEFQIVLGEDGR 63
Query: 70 IEAINVTGPNGIPVQGAPK 88
+A++VTGP+G VQG+ +
Sbjct: 64 TKAVDVTGPDGSSVQGSKR 82
Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 54/79 (68%), Gaps = 5/79 (6%)
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD- 170
G+V+++ ++GFGFIT + ED+FVH+SSI F+SLG GE V+F I +G+
Sbjct: 8 GVVRWFSDQKGFGFITPNEGGEDLFVHQSSI----KSDGFRSLGEGETVEFQIVLGEDGR 63
Query: 171 IEAINVTGPNGIPVQGAPK 189
+A++VTGP+G VQG+ +
Sbjct: 64 TKAVDVTGPDGSSVQGSKR 82
>gi|147791391|emb|CAN59784.1| hypothetical protein VITISV_042163 [Vitis vinifera]
Length = 247
Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 54/79 (68%), Gaps = 5/79 (6%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD- 69
G+V+++ ++GFGFIT + ED+FVH+SSI F+SLG GE V+F I +G+
Sbjct: 8 GVVRWFSDQKGFGFITPNEGGEDLFVHQSSI----KSDGFRSLGEGETVEFQIVLGEDGR 63
Query: 70 IEAINVTGPNGIPVQGAPK 88
+A++VTGP+G VQG+ +
Sbjct: 64 TKAVDVTGPDGSSVQGSKR 82
Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 54/79 (68%), Gaps = 5/79 (6%)
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD- 170
G+V+++ ++GFGFIT + ED+FVH+SSI F+SLG GE V+F I +G+
Sbjct: 8 GVVRWFSDQKGFGFITPNEGGEDLFVHQSSI----KSDGFRSLGEGETVEFQIVLGEDGR 63
Query: 171 IEAINVTGPNGIPVQGAPK 189
+A++VTGP+G VQG+ +
Sbjct: 64 TKAVDVTGPDGSSVQGSKR 82
>gi|443685286|gb|ELT88944.1| hypothetical protein CAPTEDRAFT_48741, partial [Capitella teleta]
Length = 109
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 50/78 (64%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ +RG+GFI +ED+FVH +IVK NP ++ +++G GE VDF++ +
Sbjct: 11 VTGKVKWFNLRRGYGFINTNVTQEDVFVHHKAIVKNNPHQYLRTVGDGEKVDFDVVKAEW 70
Query: 69 DIEAINVTGPNGIPVQGA 86
E NVT P VQG+
Sbjct: 71 GNEVANVTRPEEESVQGS 88
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 50/78 (64%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ +RG+GFI +ED+FVH +IVK NP ++ +++G GE VDF++ +
Sbjct: 11 VTGKVKWFNLRRGYGFINTNVTQEDVFVHHKAIVKNNPHQYLRTVGDGEKVDFDVVKAEW 70
Query: 170 DIEAINVTGPNGIPVQGA 187
E NVT P VQG+
Sbjct: 71 GNEVANVTRPEEESVQGS 88
>gi|340779838|ref|ZP_08699781.1| cold shock protein [Acetobacter aceti NBRC 14818]
Length = 226
Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 83/181 (45%), Gaps = 22/181 (12%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+ VK+++ ++GFGF+ +D D+F+H +++ + S+ G + IG G K
Sbjct: 54 IEATVKWFNGEKGFGFVELVDGSGDVFLHANALSQAG----HDSVSPGATLQVRIGQGPK 109
Query: 69 D---IEAINVTGPNGIPVQGAPKSSSETVSG---------TYRNDSFFPAVHTVRGIVKF 116
E I+V P + P+ + R +RGIVK+
Sbjct: 110 GRQVAEVISVDESTAQPER--PRQPGGFGGPRQGGFGGGRSPRPAPDLSNAEDIRGIVKW 167
Query: 117 YDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINV 176
Y++ +GFGFIT +DIFVH S++ + Q+L G+ + + G+K EA V
Sbjct: 168 YNATKGFGFITPESGGKDIFVHASALERSG----VQTLNEGQSTNVKVVQGQKGPEAAEV 223
Query: 177 T 177
+
Sbjct: 224 S 224
>gi|347530175|ref|YP_004836923.1| cold shock protein CspA [Sphingobium sp. SYK-6]
gi|345138857|dbj|BAK68466.1| cold shock protein CspA [Sphingobium sp. SYK-6]
Length = 266
Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 78/161 (48%), Gaps = 18/161 (11%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI--GVGKK 68
G VKF++ ++GFGFI R D ED+FVH S++ + L G+ + F + GK
Sbjct: 109 GTVKFFNGQKGFGFIVRDDGGEDVFVHISAVEQAG----LTGLAEGQQLKFTLVDRGGKI 164
Query: 69 DIEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFITR 128
+ + G +PV P+ R + G VKF+++ +GFGFI R
Sbjct: 165 SATELQIEG-EALPV---PEREERQERTPVRQLT----GERASGTVKFFNAMKGFGFIQR 216
Query: 129 LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
D + D FVH S++ + SL G+ +DF + V ++
Sbjct: 217 DDGQPDAFVHISAVERAG----LASLQEGDRLDFELEVDRR 253
>gi|304378|gb|AAA18017.1| CCAAT-binding protein, partial [Gallus gallus]
Length = 348
Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 53/83 (63%), Gaps = 8/83 (9%)
Query: 98 YRNDSFFPAVHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLG 157
+RN+ F G + + + G+G + R D KED+FVH+++I K NP+K+ +S+G G
Sbjct: 49 HRNEGF--------GNSEMVNVRNGYGLMNRNDTKEDVFVHQTAIKKNNPRKYLRSVGDG 100
Query: 158 EIVDFNIGVGKKDIEAINVTGPN 180
E V+F++ G+K EA NVTGP
Sbjct: 101 ETVEFDVVEGEKGAEAANVTGPG 123
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 48/69 (69%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 70
G + + + G+G + R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 55 GNSEMVNVRNGYGLMNRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGA 114
Query: 71 EAINVTGPN 79
EA NVTGP
Sbjct: 115 EAANVTGPG 123
>gi|357973857|ref|ZP_09137828.1| cold shock protein [Sphingomonas sp. KC8]
Length = 264
Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 80/161 (49%), Gaps = 10/161 (6%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLG-EIVDFNIGVGKKD 69
G+VKF++ ++GFGF+ R D ED+FVH S++ + + LG +VD + D
Sbjct: 100 GVVKFFNGQKGFGFVVRDDGGEDVFVHISAVEQAGLTGLAEGQPLGFTLVDRGGRISATD 159
Query: 70 IEAINVTGPNGIPVQG-APKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFITR 128
++ + G +PV+ P + G G VKF+++ +GFGFI R
Sbjct: 160 LK---IEGEP-LPVEDRGPPRDRDAAGGARGGPQRQLTGERASGTVKFFNAMKGFGFIQR 215
Query: 129 LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
D + D FVH S++ + +L G+ ++F + V ++
Sbjct: 216 DDGQPDAFVHISAVERAG----MTNLNEGDRLEFELEVDRR 252
>gi|268562898|ref|XP_002638697.1| Hypothetical protein CBG11894 [Caenorhabditis briggsae]
Length = 258
Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 75/135 (55%), Gaps = 10/135 (7%)
Query: 62 NIGVGKKDIEAINVTGPNGIPVQGAPKS-------SSETVSGTYRNDSFFPAVHT-VRGI 113
N+ V K+ +EA+++ G P KS ++E + + T ++G
Sbjct: 6 NVEVAKEALEALSI-GEKSSPSNQEEKSPRKPRIPTAERIRLWEEEQKAKRVLSTGLQGK 64
Query: 114 VKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFF-QSLGLGEIVDFNIGVGKKDIE 172
VK+Y R +GFI+R D ++D+FVH+++I K N +KF+ ++L E + F++ GK E
Sbjct: 65 VKWYSVLRRYGFISRNDGEKDVFVHQTAIAKSNTEKFYLRTLADEEDIVFDLVEGKNGPE 124
Query: 173 AINVTGPNGIPVQGA 187
A NVTGP+G V G+
Sbjct: 125 AANVTGPDGGNVAGS 139
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 54/79 (68%), Gaps = 1/79 (1%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFF-QSLGLGEIVDFNIGVGK 67
++G VK+Y R +GFI+R D ++D+FVH+++I K N +KF+ ++L E + F++ GK
Sbjct: 61 LQGKVKWYSVLRRYGFISRNDGEKDVFVHQTAIAKSNTEKFYLRTLADEEDIVFDLVEGK 120
Query: 68 KDIEAINVTGPNGIPVQGA 86
EA NVTGP+G V G+
Sbjct: 121 NGPEAANVTGPDGGNVAGS 139
>gi|341884870|gb|EGT40805.1| hypothetical protein CAEBREN_20898 [Caenorhabditis brenneri]
Length = 202
Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 59/90 (65%), Gaps = 1/90 (1%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFF-QSLGLGEIVDFNIGVGK 67
++G VK+Y R +GFI+R D ++D+FVH+++I K + +KF+ ++LG E V F++ GK
Sbjct: 62 LQGKVKWYSVLRRYGFISRNDGEKDVFVHQTAIAKSDTEKFYLRTLGDEEEVLFDLVEGK 121
Query: 68 KDIEAINVTGPNGIPVQGAPKSSSETVSGT 97
EA NVTGP G V G+ ++ + + T
Sbjct: 122 NGPEAANVTGPAGANVVGSSGDAANSTTVT 151
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 54/79 (68%), Gaps = 1/79 (1%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFF-QSLGLGEIVDFNIGVGK 168
++G VK+Y R +GFI+R D ++D+FVH+++I K + +KF+ ++LG E V F++ GK
Sbjct: 62 LQGKVKWYSVLRRYGFISRNDGEKDVFVHQTAIAKSDTEKFYLRTLGDEEEVLFDLVEGK 121
Query: 169 KDIEAINVTGPNGIPVQGA 187
EA NVTGP G V G+
Sbjct: 122 NGPEAANVTGPAGANVVGS 140
>gi|17508335|ref|NP_491631.1| Protein CEY-3 [Caenorhabditis elegans]
gi|373254431|emb|CCD71344.1| Protein CEY-3 [Caenorhabditis elegans]
Length = 265
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 54/79 (68%), Gaps = 1/79 (1%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFF-QSLGLGEIVDFNIGVGK 67
++G VK+Y R +GFI+R D ++D+FVH+++I K + +KF+ ++L E V F++ GK
Sbjct: 64 LQGKVKWYSVLRRYGFISRSDGEKDVFVHQTAISKSDTEKFYLRTLADEEEVLFDLVDGK 123
Query: 68 KDIEAINVTGPNGIPVQGA 86
EA NVTGP G+ V G+
Sbjct: 124 NGPEAANVTGPAGVNVSGS 142
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 54/79 (68%), Gaps = 1/79 (1%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFF-QSLGLGEIVDFNIGVGK 168
++G VK+Y R +GFI+R D ++D+FVH+++I K + +KF+ ++L E V F++ GK
Sbjct: 64 LQGKVKWYSVLRRYGFISRSDGEKDVFVHQTAISKSDTEKFYLRTLADEEEVLFDLVDGK 123
Query: 169 KDIEAINVTGPNGIPVQGA 187
EA NVTGP G+ V G+
Sbjct: 124 NGPEAANVTGPAGVNVSGS 142
>gi|325003077|ref|ZP_08124189.1| cold shock protein CspA [Pseudonocardia sp. P1]
Length = 309
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 68/134 (50%), Gaps = 24/134 (17%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 69
+G V+++D++RGFGF+ D D+FVH S IV + G+ V+F IG +
Sbjct: 3 QGTVRWFDAERGFGFLAPEDGSPDVFVHASEIVGGGGATVLRE---GQAVEFEIGENDRG 59
Query: 70 IEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFITRL 129
+A+ V + +++ +G+ AV + G V +Y+ +G+GF +
Sbjct: 60 PQALRV------------RVTADAAAGS--------AVGRL-GTVNWYEPGKGYGFASPD 98
Query: 130 DNKEDIFVHKSSIV 143
D DIFVH S+IV
Sbjct: 99 DGGADIFVHSSAIV 112
Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 62/138 (44%), Gaps = 19/138 (13%)
Query: 13 VKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEA 72
V +YD +GFGFI ED+FVH ++ + L G+ V F + G K +A
Sbjct: 162 VAWYDEDKGFGFINPDSGDEDVFVHARALAEG-----LTWLMEGDRVAFEVASGDKGPQA 216
Query: 73 INV---TGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFITRL 129
+V P P + AP ++ V PA G+V YD RGFGFIT
Sbjct: 217 RDVHLVREPRAAPQRPAPATAGRDV----------PA-RGGEGVVARYDDDRGFGFITPD 265
Query: 130 DNKEDIFVHKSSIVKMNP 147
+D+F H S ++ P
Sbjct: 266 AGGDDLFAHVSVVMGSEP 283
Score = 37.0 bits (84), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNP 46
G+V YD RGFGFIT +D+F H S ++ P
Sbjct: 248 GVVARYDDDRGFGFITPDAGGDDLFAHVSVVMGSEP 283
>gi|402577849|gb|EJW71805.1| hypothetical protein WUBG_17286 [Wuchereria bancrofti]
Length = 124
Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 52/77 (67%), Gaps = 2/77 (2%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNK-EDIFVHKSSIVKMNPKKFF-QSLGLGEIVDFNIGVG 66
V+G VK+Y + +GFI R DNK D+FVH+++I K K++ ++LG GE V F+I G
Sbjct: 48 VKGKVKWYSVRYHYGFIARDDNKGNDVFVHQTAIAKSRIIKYYLRTLGDGEEVLFDIVKG 107
Query: 67 KKDIEAINVTGPNGIPV 83
K+ EA NVTGPNG V
Sbjct: 108 KQGPEAANVTGPNGTEV 124
Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 52/77 (67%), Gaps = 2/77 (2%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNK-EDIFVHKSSIVKMNPKKFF-QSLGLGEIVDFNIGVG 167
V+G VK+Y + +GFI R DNK D+FVH+++I K K++ ++LG GE V F+I G
Sbjct: 48 VKGKVKWYSVRYHYGFIARDDNKGNDVFVHQTAIAKSRIIKYYLRTLGDGEEVLFDIVKG 107
Query: 168 KKDIEAINVTGPNGIPV 184
K+ EA NVTGPNG V
Sbjct: 108 KQGPEAANVTGPNGTEV 124
>gi|393722055|ref|ZP_10341982.1| cold-shock DNA-binding domain-containing protein, partial
[Sphingomonas sp. PAMC 26605]
Length = 191
Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 88/176 (50%), Gaps = 16/176 (9%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLG-EIVDFNIGVGKKD 69
G+VKF++ ++GFGF+ R D ED+FVH S++ + + LG +VD G+
Sbjct: 20 GVVKFFNGQKGFGFVVRDDGGEDVFVHISAVEQAGLTGLAEGQPLGFTLVDRG---GRIS 76
Query: 70 IEAINVTG-PNGIPVQGAPKSSSETVSGTYRNDSFFPAVHT------VRGIVKFYDSKRG 122
+ + G P + +G P+ G R + A G VKF+++ +G
Sbjct: 77 ATDLKIDGEPMAVTDRGPPRERDAAAPGGPRGAAPGGAPQRQLTGEKATGTVKFFNAMKG 136
Query: 123 FGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK-DIEAINVT 177
FGFI R D + D FVH S++ + SL G+ ++F + V ++ + A+N+T
Sbjct: 137 FGFIQRDDGQPDAFVHISAVERGG----MTSLNEGDRLEFELEVDRRGKMAAVNLT 188
>gi|341899012|gb|EGT54947.1| hypothetical protein CAEBREN_22260 [Caenorhabditis brenneri]
Length = 267
Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 54/79 (68%), Gaps = 1/79 (1%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFF-QSLGLGEIVDFNIGVGK 67
++G VK+Y R +GFI+R D ++D+FVH+++I K + +KF+ ++LG E V F++ GK
Sbjct: 62 LQGKVKWYSVLRRYGFISRNDGEKDVFVHQTAIAKSDTEKFYLRTLGDEEEVLFDLVEGK 121
Query: 68 KDIEAINVTGPNGIPVQGA 86
EA NVTGP G V G+
Sbjct: 122 NGPEAANVTGPAGANVVGS 140
Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 54/79 (68%), Gaps = 1/79 (1%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFF-QSLGLGEIVDFNIGVGK 168
++G VK+Y R +GFI+R D ++D+FVH+++I K + +KF+ ++LG E V F++ GK
Sbjct: 62 LQGKVKWYSVLRRYGFISRNDGEKDVFVHQTAIAKSDTEKFYLRTLGDEEEVLFDLVEGK 121
Query: 169 KDIEAINVTGPNGIPVQGA 187
EA NVTGP G V G+
Sbjct: 122 NGPEAANVTGPAGANVVGS 140
>gi|401399368|ref|XP_003880531.1| cold-shock protein, DNA-binding, related [Neospora caninum
Liverpool]
gi|325114942|emb|CBZ50498.1| cold-shock protein, DNA-binding, related [Neospora caninum
Liverpool]
Length = 125
Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 56/100 (56%), Gaps = 7/100 (7%)
Query: 4 FEIHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
E RG K++DSK+GFGFIT D D+FVH++ I F++L GE V+F +
Sbjct: 1 MEEQIQRGHCKWFDSKKGFGFITAEDGT-DLFVHQTEIKAQG----FRNLAEGESVEFRV 55
Query: 64 GVGKKD-IEAINVTGPNGIPVQGAPKSSSETVSGTYRNDS 102
VG +A+ VTGPNG VQG P+ + G YR D
Sbjct: 56 QVGHDGKRKAVGVTGPNGGFVQGEPR-RMDAGRGGYRGDG 94
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 50/80 (62%), Gaps = 6/80 (7%)
Query: 111 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 170
RG K++DSK+GFGFIT D D+FVH++ I F++L GE V+F + VG
Sbjct: 7 RGHCKWFDSKKGFGFITAEDGT-DLFVHQTEIKAQG----FRNLAEGESVEFRVQVGHDG 61
Query: 171 -IEAINVTGPNGIPVQGAPK 189
+A+ VTGPNG VQG P+
Sbjct: 62 KRKAVGVTGPNGGFVQGEPR 81
>gi|224000015|ref|XP_002289680.1| cold-shock DNA-binding domain-containing protein [Thalassiosira
pseudonana CCMP1335]
gi|220974888|gb|EED93217.1| cold-shock DNA-binding domain-containing protein [Thalassiosira
pseudonana CCMP1335]
Length = 136
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 58/91 (63%), Gaps = 9/91 (9%)
Query: 1 MTKFEIHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVD 60
++ E ++G VK++D+K+GFGF+ D ++FVH S+I F+SLG GE+V+
Sbjct: 34 LSSAEGDKIKGTVKWFDAKKGFGFLVPDDGSAEVFVHHSAIHANG----FRSLGDGEVVE 89
Query: 61 FNIGV---GKKDIEAINVTGPNGIPVQGAPK 88
F + GK +A+NVTGP+G VQGAP+
Sbjct: 90 FEVMQEPNGK--WKALNVTGPDGSFVQGAPR 118
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 55/83 (66%), Gaps = 9/83 (10%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGV--- 166
++G VK++D+K+GFGF+ D ++FVH S+I F+SLG GE+V+F +
Sbjct: 42 IKGTVKWFDAKKGFGFLVPDDGSAEVFVHHSAIHANG----FRSLGDGEVVEFEVMQEPN 97
Query: 167 GKKDIEAINVTGPNGIPVQGAPK 189
GK +A+NVTGP+G VQGAP+
Sbjct: 98 GK--WKALNVTGPDGSFVQGAPR 118
>gi|297735007|emb|CBI17369.3| unnamed protein product [Vitis vinifera]
Length = 208
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 54/79 (68%), Gaps = 5/79 (6%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD- 69
G+V+++ ++GFGFIT + ED+FVH+SSI F+SLG GE V+F I +G+
Sbjct: 8 GVVRWFSDQKGFGFITPNEGGEDLFVHQSSI----KSDGFRSLGEGETVEFQIVLGEDGR 63
Query: 70 IEAINVTGPNGIPVQGAPK 88
+A++VTGP+G VQG+ +
Sbjct: 64 TKAVDVTGPDGSSVQGSKR 82
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 54/79 (68%), Gaps = 5/79 (6%)
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD- 170
G+V+++ ++GFGFIT + ED+FVH+SSI F+SLG GE V+F I +G+
Sbjct: 8 GVVRWFSDQKGFGFITPNEGGEDLFVHQSSI----KSDGFRSLGEGETVEFQIVLGEDGR 63
Query: 171 IEAINVTGPNGIPVQGAPK 189
+A++VTGP+G VQG+ +
Sbjct: 64 TKAVDVTGPDGSSVQGSKR 82
>gi|338738487|ref|YP_004675449.1| tandem cold-shock DNA-binding domain-containing protein
[Hyphomicrobium sp. MC1]
gi|337759050|emb|CCB64877.1| putative tandem cold-shock DNA-binding domain protein
[Hyphomicrobium sp. MC1]
Length = 199
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 82/183 (44%), Gaps = 21/183 (11%)
Query: 5 EIHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIG 64
E+ V G++K++D+ +G+GFI + DI +H + + FQ+ G V +
Sbjct: 29 EVFEVAGMIKWFDASKGYGFIVPDNGLPDILLHVTCLRAGG----FQTAYEGARVHCEVL 84
Query: 65 VGKKDIEA---INVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKR 121
K ++A +++ + I P+ + V P R VK+++ R
Sbjct: 85 RRPKGMQAFRILSMDESSAIHPSQLPQRTHVIVQ---------PESDWCRAYVKWFNRVR 135
Query: 122 GFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNG 181
GFGF+TR + DIF H ++ + F L G+IV G G K A + P+G
Sbjct: 136 GFGFLTRGEGTPDIFCHMETLRRFG----FTELRPGQIVQVRWGYGSKGCMAAELR-PDG 190
Query: 182 IPV 184
+P
Sbjct: 191 VPT 193
>gi|341877791|gb|EGT33726.1| hypothetical protein CAEBREN_10862 [Caenorhabditis brenneri]
Length = 265
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 53/79 (67%), Gaps = 1/79 (1%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFF-QSLGLGEIVDFNIGVGK 67
++G VK+Y R +GFI+R D ++D+FVH+++I K +KF+ ++LG E V F++ GK
Sbjct: 62 LQGKVKWYSVLRRYGFISRNDGEKDVFVHQTAIAKSETEKFYLRTLGDDEEVLFDLVDGK 121
Query: 68 KDIEAINVTGPNGIPVQGA 86
EA NVTGP G V G+
Sbjct: 122 NGPEAANVTGPAGANVVGS 140
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 53/79 (67%), Gaps = 1/79 (1%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFF-QSLGLGEIVDFNIGVGK 168
++G VK+Y R +GFI+R D ++D+FVH+++I K +KF+ ++LG E V F++ GK
Sbjct: 62 LQGKVKWYSVLRRYGFISRNDGEKDVFVHQTAIAKSETEKFYLRTLGDDEEVLFDLVDGK 121
Query: 169 KDIEAINVTGPNGIPVQGA 187
EA NVTGP G V G+
Sbjct: 122 NGPEAANVTGPAGANVVGS 140
>gi|226495947|ref|NP_001141714.1| uncharacterized protein LOC100273843 [Zea mays]
gi|194705650|gb|ACF86909.1| unknown [Zea mays]
Length = 303
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 50/79 (63%), Gaps = 5/79 (6%)
Query: 104 FPAVHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFN 163
PA RG VK+++ +GFGFI+ D ED+FVH+SSI + F+SL GE V+F+
Sbjct: 55 LPAAARQRGTVKWFNDTKGFGFISPEDGSEDLFVHQSSIK----SEGFRSLAEGEEVEFS 110
Query: 164 IGVGKK-DIEAINVTGPNG 181
+ G +A++VTGP+G
Sbjct: 111 VSEGDDGRTKAVDVTGPDG 129
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 48/72 (66%), Gaps = 5/72 (6%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK- 68
RG VK+++ +GFGFI+ D ED+FVH+SSI + F+SL GE V+F++ G
Sbjct: 62 RGTVKWFNDTKGFGFISPEDGSEDLFVHQSSIK----SEGFRSLAEGEEVEFSVSEGDDG 117
Query: 69 DIEAINVTGPNG 80
+A++VTGP+G
Sbjct: 118 RTKAVDVTGPDG 129
>gi|349686161|ref|ZP_08897303.1| cold shock protein [Gluconacetobacter oboediens 174Bp2]
Length = 205
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 82/178 (46%), Gaps = 17/178 (9%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+ VK+++S++GFGF+ D D+F+H ++ +NP ++ G + IG G K
Sbjct: 34 ISATVKWFNSEKGFGFVELSDGSGDVFLHANA---LNPTGH-ATVAPGTTLVVQIGQGPK 89
Query: 69 DIEAINVTGPNGIPVQ---------GAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDS 119
+ V + Q GA + S + R +RG VK+Y++
Sbjct: 90 GRQVAGVLSVDESTAQPERPRSGGFGAAPGARGGFSRSGRPAPDLSHAQDMRGTVKWYNA 149
Query: 120 KRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVT 177
+GFGFIT + +DIFVH S++ + L G+ + + G+K EA ++
Sbjct: 150 TKGFGFITPENGGKDIFVHASALERSG----LSGLTEGQTANVQVVEGQKGPEAAALS 203
>gi|324511273|gb|ADY44699.1| Y-box factor [Ascaris suum]
Length = 269
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 55/84 (65%), Gaps = 2/84 (2%)
Query: 9 VRGIVKFYDSKRGFGFITRLDN-KEDIFVHKSSIVKMNPKKFF-QSLGLGEIVDFNIGVG 66
V G VK+Y + +GFI R D+ D+FVH+++I K K++ +SL GE V F+I G
Sbjct: 78 VTGKVKWYSVRYHYGFIARDDDVANDVFVHQTAIAKSRMVKYYLRSLEEGEEVLFDIVEG 137
Query: 67 KKDIEAINVTGPNGIPVQGAPKSS 90
K+ EA NVTGP+G+ V+G P +S
Sbjct: 138 KQGPEAANVTGPHGVEVRGNPLTS 161
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 53/81 (65%), Gaps = 2/81 (2%)
Query: 110 VRGIVKFYDSKRGFGFITRLDN-KEDIFVHKSSIVKMNPKKFF-QSLGLGEIVDFNIGVG 167
V G VK+Y + +GFI R D+ D+FVH+++I K K++ +SL GE V F+I G
Sbjct: 78 VTGKVKWYSVRYHYGFIARDDDVANDVFVHQTAIAKSRMVKYYLRSLEEGEEVLFDIVEG 137
Query: 168 KKDIEAINVTGPNGIPVQGAP 188
K+ EA NVTGP+G+ V+G P
Sbjct: 138 KQGPEAANVTGPHGVEVRGNP 158
>gi|15226451|ref|NP_179702.1| glycine-rich protein 2B [Arabidopsis thaliana]
gi|17366505|sp|Q38896.1|CSP4_ARATH RecName: Full=Cold shock domain-containing protein 4;
Short=AtCSP4; AltName: Full=Glycine-rich protein 2b;
Short=AtGRP2b
gi|1063684|gb|AAA91165.1| AtGRP2b [Arabidopsis thaliana]
gi|4803937|gb|AAD29810.1| glycine-rich protein (AtGRP2) [Arabidopsis thaliana]
gi|16323178|gb|AAL15323.1| At2g21060/F26H11.18 [Arabidopsis thaliana]
gi|60543359|gb|AAX22277.1| At2g21060 [Arabidopsis thaliana]
gi|330252023|gb|AEC07117.1| glycine-rich protein 2B [Arabidopsis thaliana]
Length = 201
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 52/77 (67%), Gaps = 5/77 (6%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 69
+G VK++D+++GFGFIT D +D+FVH+SSI + F+SL E V+F++ V
Sbjct: 16 KGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIR----SEGFRSLAAEESVEFDVEVDNSG 71
Query: 70 I-EAINVTGPNGIPVQG 85
+AI V+GP+G PVQG
Sbjct: 72 RPKAIEVSGPDGAPVQG 88
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 52/77 (67%), Gaps = 5/77 (6%)
Query: 111 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 170
+G VK++D+++GFGFIT D +D+FVH+SSI + F+SL E V+F++ V
Sbjct: 16 KGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIR----SEGFRSLAAEESVEFDVEVDNSG 71
Query: 171 I-EAINVTGPNGIPVQG 186
+AI V+GP+G PVQG
Sbjct: 72 RPKAIEVSGPDGAPVQG 88
>gi|390165717|ref|ZP_10217997.1| cold-shock DNA-binding domain-containing protein [Sphingobium
indicum B90A]
gi|389591397|gb|EIM69365.1| cold-shock DNA-binding domain-containing protein [Sphingobium
indicum B90A]
Length = 274
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 78/162 (48%), Gaps = 7/162 (4%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLG-EIVDFNIGVGKKD 69
G+VKF++ ++GFGFI R D ED+FVH S++ + + LG +VD V D
Sbjct: 104 GVVKFFNGQKGFGFIVRDDGGEDVFVHISAVEQAGLTGLAEGQPLGFTLVDRGGKVSATD 163
Query: 70 IEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVR--GIVKFYDSKRGFGFIT 127
++ P P++ + + R G VKF+++ +GFGFI
Sbjct: 164 LKIEGEPLPVTERAPREPRAGGFGDRPGGGDRGPQRQLTGERASGTVKFFNAMKGFGFIQ 223
Query: 128 RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
R D + D FVH S++ + +L G+ +DF + V ++
Sbjct: 224 RDDGQPDAFVHISAVERAG----MSALNEGDRLDFELEVDRR 261
>gi|294013110|ref|YP_003546570.1| cold shock protein CspA [Sphingobium japonicum UT26S]
gi|292676440|dbj|BAI97958.1| cold shock protein CspA [Sphingobium japonicum UT26S]
Length = 272
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 78/162 (48%), Gaps = 7/162 (4%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLG-EIVDFNIGVGKKD 69
G+VKF++ ++GFGFI R D ED+FVH S++ + + LG +VD V D
Sbjct: 102 GVVKFFNGQKGFGFIVRDDGGEDVFVHISAVEQAGLTGLAEGQPLGFTLVDRGGKVSATD 161
Query: 70 IEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVR--GIVKFYDSKRGFGFIT 127
++ P P++ + + R G VKF+++ +GFGFI
Sbjct: 162 LKIEGEPLPVTERAPREPRAGGFGDRPGGGDRGPQRQLTGERASGTVKFFNAMKGFGFIQ 221
Query: 128 RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
R D + D FVH S++ + +L G+ +DF + V ++
Sbjct: 222 RDDGQPDAFVHISAVERAG----MSALNEGDRLDFELEVDRR 259
>gi|308497891|ref|XP_003111132.1| hypothetical protein CRE_03839 [Caenorhabditis remanei]
gi|308240680|gb|EFO84632.1| hypothetical protein CRE_03839 [Caenorhabditis remanei]
Length = 263
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 53/79 (67%), Gaps = 1/79 (1%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFF-QSLGLGEIVDFNIGVGK 67
++G VK+Y R +GFI+R D ++D+FVH+++I K +KF+ ++LG E V F++ GK
Sbjct: 62 LQGKVKWYSVLRRYGFISREDGEKDVFVHQTAIAKSATEKFYLRTLGDEEEVIFDLVEGK 121
Query: 68 KDIEAINVTGPNGIPVQGA 86
EA NVTGP G V G+
Sbjct: 122 NGPEAANVTGPAGENVVGS 140
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 53/79 (67%), Gaps = 1/79 (1%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFF-QSLGLGEIVDFNIGVGK 168
++G VK+Y R +GFI+R D ++D+FVH+++I K +KF+ ++LG E V F++ GK
Sbjct: 62 LQGKVKWYSVLRRYGFISREDGEKDVFVHQTAIAKSATEKFYLRTLGDEEEVIFDLVEGK 121
Query: 169 KDIEAINVTGPNGIPVQGA 187
EA NVTGP G V G+
Sbjct: 122 NGPEAANVTGPAGENVVGS 140
>gi|148555809|ref|YP_001263391.1| cold-shock DNA-binding protein family protein [Sphingomonas
wittichii RW1]
gi|148500999|gb|ABQ69253.1| cold-shock DNA-binding protein family [Sphingomonas wittichii RW1]
Length = 288
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 84/171 (49%), Gaps = 14/171 (8%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI--GVGK 67
+G+VKF++ ++GFGFI R D ED+FVH S++ + L G+ ++F + G+
Sbjct: 126 KGVVKFFNGQKGFGFIVRDDGGEDVFVHISAVEQAG----LTGLAEGQPLEFTLVDRGGR 181
Query: 68 KDIEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFIT 127
+ + G +PV+ + G VKF+++ +GFGFI
Sbjct: 182 VSATDLKIEG-EPLPVEDRGPRPAAAGGAGGPARQL--TGEKASGTVKFFNAMKGFGFIQ 238
Query: 128 RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK-DIEAINVT 177
R D + D FVH S++ + +L G+ ++F + V ++ A+N+T
Sbjct: 239 RDDGQPDAFVHISAVERAG----MTNLNEGDRLEFELEVDRRGKYAAVNLT 285
>gi|452752254|ref|ZP_21951997.1| cold shock protein [alpha proteobacterium JLT2015]
gi|451960330|gb|EMD82743.1| cold shock protein [alpha proteobacterium JLT2015]
Length = 269
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 79/166 (47%), Gaps = 12/166 (7%)
Query: 6 IHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI-- 63
+ G VK+++ +GFGFI R D ED+FVH S++ + +L G+ V FN+
Sbjct: 103 LGNASGTVKWFNPTKGFGFIAR-DEGEDVFVHISAVERAGHT----TLAEGQAVRFNLMD 157
Query: 64 GVGKKDIEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGF 123
G+ + + G + G+ D F + G VKF+++ +GF
Sbjct: 158 RGGRLSASDLEIDGEAPAAPA-RAPRQDQGGGGSRDQDVDFTPGERLDGAVKFFNAMKGF 216
Query: 124 GFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
GF++R D + D FVH S++ + QSL G+ V F + ++
Sbjct: 217 GFLSRDDGQPDAFVHISALERSG----MQSLTEGQRVSFELARDRR 258
>gi|85375609|ref|YP_459671.1| cold shock protein [Erythrobacter litoralis HTCC2594]
gi|84788692|gb|ABC64874.1| cold shock protein [Erythrobacter litoralis HTCC2594]
Length = 253
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 94/189 (49%), Gaps = 39/189 (20%)
Query: 6 IHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI-- 63
+ T +G VKF++ ++GFGFI + ED+FVH S++ + L G+ ++FN+
Sbjct: 94 VGTGKGTVKFFNGQKGFGFIQQEGGGEDVFVHISAVERAG----LDGLAEGQELEFNLVD 149
Query: 64 GVGKKDIEAINVTGPNGIPVQ----GAPKS--SSETVSGTYRNDSFFPAVHTVRGIVKFY 117
GK + + V G + I V+ G PK + E +GT VKF+
Sbjct: 150 RGGKVSAQDLQVVG-DVIAVESRDSGPPKRELTGEKATGT----------------VKFF 192
Query: 118 DSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK-DIEAINV 176
+S +GFGF+ R D + D FVH S++ + + GE +F++ V ++ A+N+
Sbjct: 193 NSMKGFGFLVRDDGQPDAFVHISAVERSG----LSGIDEGERYEFDLEVDRRGKYSAVNL 248
Query: 177 TGPNGIPVQ 185
+PVQ
Sbjct: 249 -----VPVQ 252
>gi|341613929|ref|ZP_08700798.1| cold shock protein [Citromicrobium sp. JLT1363]
Length = 268
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 95/183 (51%), Gaps = 20/183 (10%)
Query: 6 IHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI-- 63
+ T +G VKF++ ++GFGFI + +D+FVH S++ + + L G+ ++FN+
Sbjct: 102 VGTGKGQVKFFNGQKGFGFIQQEGGGDDVFVHISAVERAG----LEGLAEGQELEFNLVD 157
Query: 64 GVGKKDIEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGF 123
GK + + V G + IPV G + + SG R + G VKF++S +GF
Sbjct: 158 RGGKISAQDLQVVG-DVIPVSGGGGAGASADSGPPRREL---TGEKATGTVKFFNSMKGF 213
Query: 124 GFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK-DIEAINVTGPNGI 182
GF+ R D + D FVH S++ + + GE +F++ V ++ A+N+ +
Sbjct: 214 GFLVRDDGQPDAFVHISAVERSG----LSQINEGERYEFDLEVDRRGKYSAVNL-----V 264
Query: 183 PVQ 185
PVQ
Sbjct: 265 PVQ 267
>gi|268564326|ref|XP_002639074.1| C. briggsae CBR-CEY-2 protein [Caenorhabditis briggsae]
Length = 256
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 54/79 (68%), Gaps = 1/79 (1%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFF-QSLGLGEIVDFNIGVGK 67
++G VK+Y R +GFI+R D ++DIFVH+++I K + +KF+ ++L E + F++ GK
Sbjct: 61 LQGKVKWYSVLRRYGFISRNDGEKDIFVHQTAIAKSDTEKFYLRTLADEEDIVFDLVEGK 120
Query: 68 KDIEAINVTGPNGIPVQGA 86
EA NVTGP+G V G+
Sbjct: 121 NGPEAANVTGPDGGNVTGS 139
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 54/79 (68%), Gaps = 1/79 (1%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFF-QSLGLGEIVDFNIGVGK 168
++G VK+Y R +GFI+R D ++DIFVH+++I K + +KF+ ++L E + F++ GK
Sbjct: 61 LQGKVKWYSVLRRYGFISRNDGEKDIFVHQTAIAKSDTEKFYLRTLADEEDIVFDLVEGK 120
Query: 169 KDIEAINVTGPNGIPVQGA 187
EA NVTGP+G V G+
Sbjct: 121 NGPEAANVTGPDGGNVTGS 139
>gi|170031766|ref|XP_001843755.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167870926|gb|EDS34309.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 247
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 53/85 (62%), Gaps = 11/85 (12%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+ G VK+++ K GFGFITR D ED+FVH+SSI++ N + +S+G GE+V+F +
Sbjct: 52 ITGTVKWFNVKDGFGFITRHDTGEDLFVHQSSILRPNSRHSVRSVGEGEVVEFGVI---- 107
Query: 69 DIEAINVTGPNGIPVQGA----PKS 89
A VTGP V+G+ PKS
Sbjct: 108 ---ATKVTGPGFQRVKGSAFVRPKS 129
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 50/78 (64%), Gaps = 7/78 (8%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+ G VK+++ K GFGFITR D ED+FVH+SSI++ N + +S+G GE+V+F +
Sbjct: 52 ITGTVKWFNVKDGFGFITRHDTGEDLFVHQSSILRPNSRHSVRSVGEGEVVEFGVI---- 107
Query: 170 DIEAINVTGPNGIPVQGA 187
A VTGP V+G+
Sbjct: 108 ---ATKVTGPGFQRVKGS 122
>gi|209966917|ref|YP_002299832.1| cold shock-like protein CspA [Rhodospirillum centenum SW]
gi|209960383|gb|ACJ01020.1| cold shock-like protein CspA [Rhodospirillum centenum SW]
Length = 199
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 77/171 (45%), Gaps = 21/171 (12%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
VR VK+++ +GFGF+ D D F+H S + ++ L G V IG G K
Sbjct: 43 VRATVKWFNGVKGFGFVAPADGTPDAFLHASVLSRVG----LSDLAEGAEVMVVIGPGPK 98
Query: 69 D---IEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGF 125
I ++V G G P + P S G P V + G VK++ +GFGF
Sbjct: 99 GPQVIRLVDVIG-GGSPRRERPAPSRAAPGG--------PEVE-LEGSVKWFKDDKGFGF 148
Query: 126 ITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINV 176
+T D +D+FVHKS + + +SL GE V + K EA +
Sbjct: 149 VTTDDGGKDVFVHKSILRRAG----LESLQSGERVLMRVTEAPKGREATWI 195
>gi|386783739|gb|AFJ24764.1| Y box protein-1, partial [Schmidtea mediterranea]
Length = 191
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/102 (44%), Positives = 57/102 (55%), Gaps = 12/102 (11%)
Query: 9 VRGIVKFYDSKRGFGFITRLD--NKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVG 66
V G VK++ SK G+GFI+ D N +DIFVH SSI N SL GE V F+I G
Sbjct: 23 VTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHSSITANNAT----SLADGEEVLFDIVQG 78
Query: 67 KKDIEAINVTGPN------GIPVQGAPKSSSETVSGTYRNDS 102
K +EA NVTGPN G P + + +S++ YRN S
Sbjct: 79 AKGLEARNVTGPNGGDVIGGKPYEPSDRSNNRGDRDNYRNQS 120
Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/92 (47%), Positives = 51/92 (55%), Gaps = 7/92 (7%)
Query: 103 FFPAVHTVRGIVKFYDSKRGFGFITRLD--NKEDIFVHKSSIVKMNPKKFFQSLGLGEIV 160
F V G VK++ SK G+GFI+ D N +DIFVH SSI N SL GE V
Sbjct: 16 FIMTASQVTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHSSITANNAT----SLADGEEV 71
Query: 161 DFNIGVGKKDIEAINVTGPNGIPV-QGAPKVP 191
F+I G K +EA NVTGPNG V G P P
Sbjct: 72 LFDIVQGAKGLEARNVTGPNGGDVIGGKPYEP 103
>gi|125602074|gb|EAZ41399.1| hypothetical protein OsJ_25920 [Oryza sativa Japonica Group]
Length = 238
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 51/80 (63%), Gaps = 5/80 (6%)
Query: 106 AVHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIG 165
A V+G VK++D+ +GFGFIT D ED+FVH+SS+ ++SL G++V+F++G
Sbjct: 2 ASERVKGTVKWFDATKGFGFITPDDGGEDLFVHQSSLKSDG----YRSLNDGDVVEFSVG 57
Query: 166 VGKK-DIEAINVTGPNGIPV 184
G +A+NVT P G V
Sbjct: 58 SGNDGRTKAVNVTAPGGRAV 77
Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 50/76 (65%), Gaps = 5/76 (6%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V+G VK++D+ +GFGFIT D ED+FVH+SS+ ++SL G++V+F++G G
Sbjct: 6 VKGTVKWFDATKGFGFITPDDGGEDLFVHQSSLKSDG----YRSLNDGDVVEFSVGSGND 61
Query: 69 -DIEAINVTGPNGIPV 83
+A+NVT P G V
Sbjct: 62 GRTKAVNVTAPGGRAV 77
>gi|431919185|gb|ELK17890.1| DNA-binding protein A [Pteropus alecto]
Length = 191
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 55/91 (60%), Gaps = 7/91 (7%)
Query: 85 GAPKSSSETVSGTYRNDSFFPAVHTVR--GIVKFYDSKRGFGFITRLDNKEDIFVHKSSI 142
APK++ T S D P V + R G VK+++ K G+GFI R D D+FVH+S+I
Sbjct: 49 AAPKAAEATGS-----DGAEPKVISRRMTGTVKWFNVKEGYGFIKRSDTHGDVFVHQSAI 103
Query: 143 VKMNPKKFFQSLGLGEIVDFNIGVGKKDIEA 173
+ NP K+ +S+G GE V+F++ ++ EA
Sbjct: 104 SRNNPLKYQRSVGEGETVEFDLVQSERGAEA 134
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 43/62 (69%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 70
G VK+++ K G+GFI R D D+FVH+S+I + NP K+ +S+G GE V+F++ ++
Sbjct: 73 GTVKWFNVKEGYGFIKRSDTHGDVFVHQSAISRNNPLKYQRSVGEGETVEFDLVQSERGA 132
Query: 71 EA 72
EA
Sbjct: 133 EA 134
>gi|294470714|gb|ADE80749.1| cold shock domain protein 2 [Eutrema salsugineum]
Length = 201
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 50/77 (64%), Gaps = 5/77 (6%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 69
RG VK++D+++GFGFIT D +D+FVH+SSI F+SL E V+F + +
Sbjct: 13 RGTVKWFDTQKGFGFITPDDAGDDLFVHQSSIR----SDGFRSLAADESVEFEVEMDNNG 68
Query: 70 I-EAINVTGPNGIPVQG 85
+AI V+GP+G PVQG
Sbjct: 69 RPKAIEVSGPDGAPVQG 85
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 50/77 (64%), Gaps = 5/77 (6%)
Query: 111 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 170
RG VK++D+++GFGFIT D +D+FVH+SSI F+SL E V+F + +
Sbjct: 13 RGTVKWFDTQKGFGFITPDDAGDDLFVHQSSIR----SDGFRSLAADESVEFEVEMDNNG 68
Query: 171 I-EAINVTGPNGIPVQG 186
+AI V+GP+G PVQG
Sbjct: 69 RPKAIEVSGPDGAPVQG 85
>gi|115474635|ref|NP_001060914.1| Os08g0129200 [Oryza sativa Japonica Group]
gi|29467522|dbj|BAC66711.1| putative cold shock protein-1 [Oryza sativa Japonica Group]
gi|113622883|dbj|BAF22828.1| Os08g0129200 [Oryza sativa Japonica Group]
gi|187609563|gb|ACD13289.1| cold shock domain protein 2 [Oryza sativa Japonica Group]
gi|215715378|dbj|BAG95129.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 197
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 53/85 (62%), Gaps = 5/85 (5%)
Query: 106 AVHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIG 165
A V+G VK++D+ +GFGFIT D ED+FVH+SS+ ++SL G++V+F++G
Sbjct: 2 ASERVKGTVKWFDATKGFGFITPDDGGEDLFVHQSSL----KSDGYRSLNDGDVVEFSVG 57
Query: 166 VGKKD-IEAINVTGPNGIPVQGAPK 189
G +A++VT P G + G +
Sbjct: 58 SGNDGRTKAVDVTAPGGGALTGGSR 82
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 53/83 (63%), Gaps = 5/83 (6%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V+G VK++D+ +GFGFIT D ED+FVH+SS+ ++SL G++V+F++G G
Sbjct: 6 VKGTVKWFDATKGFGFITPDDGGEDLFVHQSSL----KSDGYRSLNDGDVVEFSVGSGND 61
Query: 69 D-IEAINVTGPNGIPVQGAPKSS 90
+A++VT P G + G + S
Sbjct: 62 GRTKAVDVTAPGGGALTGGSRPS 84
>gi|332668957|ref|YP_004451965.1| cold-shock DNA-binding domain-containing protein [Cellulomonas fimi
ATCC 484]
gi|332337995|gb|AEE44578.1| cold-shock DNA-binding domain protein [Cellulomonas fimi ATCC 484]
Length = 312
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 65/134 (48%), Gaps = 24/134 (17%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 69
+G V+++D++RGFGF++ D ED+FVH S IV + + + G+ V+F +G G +
Sbjct: 3 QGTVRWFDAERGFGFLSLGDEAEDLFVHASEIVGDDGPRVLRE---GQEVEFEVGEGDR- 58
Query: 70 IEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFITRL 129
P + V G D+ V G V +Y+ +G+GF+
Sbjct: 59 ----------------GPVARRVRVVGDVAGDAPL----GVLGTVSWYEPTKGYGFVGPD 98
Query: 130 DNKEDIFVHKSSIV 143
+IFVH S+IV
Sbjct: 99 GGGPEIFVHSSAIV 112
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 61/132 (46%), Gaps = 7/132 (5%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 70
G V +YD +GFGF++ D ED+FVH S+V L G+ V +++ G +
Sbjct: 157 GTVTWYDPDKGFGFVSPDDGGEDLFVHARSLVGD-----LSELVEGDRVTYDVAAGDRGP 211
Query: 71 EAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFITRLD 130
+A +V G + + G R S V G+V +D RGFGFIT
Sbjct: 212 QARDVRLAGGSTRRARAAQPAHGRQG--RPSSGDAPVRGGDGVVARFDPDRGFGFITPDA 269
Query: 131 NKEDIFVHKSSI 142
D+FVH S +
Sbjct: 270 GGPDLFVHVSVV 281
>gi|410911350|ref|XP_003969153.1| PREDICTED: protein lin-28 homolog A-like [Takifugu rubripes]
Length = 210
Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 56/114 (49%), Gaps = 21/114 (18%)
Query: 85 GAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFI-------TRLDNKEDIFV 137
G+P+S E + R G+ K+++ + GFGFI T LD D+FV
Sbjct: 5 GSPQSEEEEAAALSRGS----------GVCKWFNMRMGFGFISMSSRDGTPLDPNLDVFV 54
Query: 138 HKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGAPKVP 191
H+S + F+SL GE +DF K +EAI VTGP+G P G+ + P
Sbjct: 55 HQSKLHMEG----FRSLREGEALDFTFKKSTKGLEAIRVTGPDGAPCLGSKRRP 104
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 11/85 (12%)
Query: 11 GIVKFYDSKRGFGFI-------TRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
G+ K+++ + GFGFI T LD D+FVH+S + F+SL GE +DF
Sbjct: 22 GVCKWFNMRMGFGFISMSSRDGTPLDPNLDVFVHQSKLHMEG----FRSLREGEALDFTF 77
Query: 64 GVGKKDIEAINVTGPNGIPVQGAPK 88
K +EAI VTGP+G P G+ +
Sbjct: 78 KKSTKGLEAIRVTGPDGAPCLGSKR 102
>gi|145356187|ref|XP_001422318.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144582559|gb|ABP00635.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 76
Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 48/79 (60%), Gaps = 4/79 (5%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 69
RG VK+++ +GFGFIT D E+IFVH++ I + F+S E V++ +
Sbjct: 1 RGKVKWFNVTKGFGFITPHDGSEEIFVHQTGISRAG----FRSAWEDEEVEYEVSNADGR 56
Query: 70 IEAINVTGPNGIPVQGAPK 88
A+NVTGPNG V+GAPK
Sbjct: 57 PVAVNVTGPNGAAVKGAPK 75
Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 48/79 (60%), Gaps = 4/79 (5%)
Query: 111 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 170
RG VK+++ +GFGFIT D E+IFVH++ I + F+S E V++ +
Sbjct: 1 RGKVKWFNVTKGFGFITPHDGSEEIFVHQTGISRAG----FRSAWEDEEVEYEVSNADGR 56
Query: 171 IEAINVTGPNGIPVQGAPK 189
A+NVTGPNG V+GAPK
Sbjct: 57 PVAVNVTGPNGAAVKGAPK 75
>gi|145347619|ref|XP_001418260.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578489|gb|ABO96553.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 106
Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 52/80 (65%), Gaps = 4/80 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
RG VK++++ +GFGFI D E+IFVH++ I F+S+ GE V++++
Sbjct: 5 ARGKVKWFNATKGFGFIIPHDGSEEIFVHQTGISCAG----FRSVWEGEEVEYDVDDTDF 60
Query: 69 DIEAINVTGPNGIPVQGAPK 88
+A+NVTGP+G+ V+GAP+
Sbjct: 61 APKAVNVTGPDGVAVKGAPR 80
Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 52/80 (65%), Gaps = 4/80 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
RG VK++++ +GFGFI D E+IFVH++ I F+S+ GE V++++
Sbjct: 5 ARGKVKWFNATKGFGFIIPHDGSEEIFVHQTGISCAG----FRSVWEGEEVEYDVDDTDF 60
Query: 170 DIEAINVTGPNGIPVQGAPK 189
+A+NVTGP+G+ V+GAP+
Sbjct: 61 APKAVNVTGPDGVAVKGAPR 80
>gi|268566689|ref|XP_002639788.1| Hypothetical protein CBG02238 [Caenorhabditis briggsae]
Length = 263
Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 54/79 (68%), Gaps = 1/79 (1%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFF-QSLGLGEIVDFNIGVGK 67
++G VK+Y R +GFI+R D ++D+FVH+++I K +KF+ ++LG E V F++ GK
Sbjct: 61 LQGKVKWYSVLRRYGFISRNDGEKDVFVHQTAIAKSLTEKFYLRTLGDEEEVLFDLVDGK 120
Query: 68 KDIEAINVTGPNGIPVQGA 86
EA NVTGP+G V G+
Sbjct: 121 NGPEAANVTGPDGGNVVGS 139
Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 54/79 (68%), Gaps = 1/79 (1%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFF-QSLGLGEIVDFNIGVGK 168
++G VK+Y R +GFI+R D ++D+FVH+++I K +KF+ ++LG E V F++ GK
Sbjct: 61 LQGKVKWYSVLRRYGFISRNDGEKDVFVHQTAIAKSLTEKFYLRTLGDEEEVLFDLVDGK 120
Query: 169 KDIEAINVTGPNGIPVQGA 187
EA NVTGP+G V G+
Sbjct: 121 NGPEAANVTGPDGGNVVGS 139
>gi|433604686|ref|YP_007037055.1| Cold shock protein CspA [Saccharothrix espanaensis DSM 44229]
gi|407882539|emb|CCH30182.1| Cold shock protein CspA [Saccharothrix espanaensis DSM 44229]
Length = 315
Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 65/134 (48%), Gaps = 24/134 (17%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 69
+G V+++D++RGFGF+ D D+FVH S IV+ K + G+ V F +G
Sbjct: 3 QGTVRWFDAERGFGFLAPEDGSPDVFVHASEIVEDGGAKVLRE---GQAVVFEVGE---- 55
Query: 70 IEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFITRL 129
N GP + V+ +++ + G + G V +Y+ +G+GF +
Sbjct: 56 ----NDRGPQALRVRVTADAATGSAVG-------------LLGTVNWYEPGKGYGFASPD 98
Query: 130 DNKEDIFVHKSSIV 143
DIFVH S+IV
Sbjct: 99 GGGADIFVHSSAIV 112
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 59/139 (42%), Gaps = 11/139 (7%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 70
G V +YD +GFGFI DIFVH ++ + L G+ V + + G K
Sbjct: 160 GTVAWYDEDKGFGFINPDSGAGDIFVHAQALAEG-----LTWLAEGDRVAYEVASGDKGP 214
Query: 71 EAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFP--AVHTVRGIVKFYDSKRGFGFITR 128
+A +V + P+++ + V G+V YD RGFGFIT
Sbjct: 215 QARDVH----LVRSAEPQTAPRRSAPAAAAGPAARDVPVRGGEGVVARYDGDRGFGFITP 270
Query: 129 LDNKEDIFVHKSSIVKMNP 147
+D+F H S I+ P
Sbjct: 271 DAGGDDLFAHVSVIMGSEP 289
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 111 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 170
+G V+++D++RGFGF+ D D+FVH S IV+ K + G+ V F +G +
Sbjct: 3 QGTVRWFDAERGFGFLAPEDGSPDVFVHASEIVEDGGAKVLRE---GQAVVFEVGENDRG 59
Query: 171 IEAINV 176
+A+ V
Sbjct: 60 PQALRV 65
>gi|331698444|ref|YP_004334683.1| cold-shock DNA-binding domain-containing protein [Pseudonocardia
dioxanivorans CB1190]
gi|326953133|gb|AEA26830.1| cold-shock DNA-binding domain protein [Pseudonocardia dioxanivorans
CB1190]
Length = 315
Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 63/134 (47%), Gaps = 24/134 (17%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 69
+G V+++D+ RGFGF+ D D+FVH S IV K + G+ V F IG
Sbjct: 3 QGTVRWFDADRGFGFLAPEDGSPDVFVHASEIVGGGGAKALRE---GQAVVFEIGE---- 55
Query: 70 IEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFITRL 129
N GP + V+ +++ + G V G V +Y+ +G+GF +
Sbjct: 56 ----NDRGPQALGVRVTADAATGSAVG-------------VLGTVNWYEPGKGYGFASPD 98
Query: 130 DNKEDIFVHKSSIV 143
DIFVH S+IV
Sbjct: 99 GGGADIFVHSSAIV 112
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 61/135 (45%), Gaps = 7/135 (5%)
Query: 13 VKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEA 72
V +YD RGFGFI D+FVH ++ + L G+ V + + G+K +A
Sbjct: 162 VAWYDEDRGFGFIDPDSGAGDVFVHARALAEG-----LTWLAEGDRVAYEVASGEKGPQA 216
Query: 73 INVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFITRLDNK 132
+V G + AP+ S+ + V G+V YD RGFGFIT
Sbjct: 217 RDVHLVRGAEPRTAPQRSAPAAAAGPAARDA--PVRGGEGVVARYDEDRGFGFITPDAGG 274
Query: 133 EDIFVHKSSIVKMNP 147
+D+F H S I+ P
Sbjct: 275 DDLFAHVSVIMGSEP 289
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 78/181 (43%), Gaps = 27/181 (14%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G V +Y+ +G+GF + DIFVH S+IV + G+ V F I G++
Sbjct: 79 VLGTVNWYEPGKGYGFASPDGGGADIFVHSSAIVTGG------VVTEGQRVAFLIVDGER 132
Query: 69 DIEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFITR 128
+A +V IP+ S + S + + V +YD RGFGFI
Sbjct: 133 GPQAGHV-----IPLGAGAGSPAAAGSADGADGT-----------VAWYDEDRGFGFIDP 176
Query: 129 LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGAP 188
D+FVH ++ + L G+ V + + G+K +A +V G + AP
Sbjct: 177 DSGAGDVFVHARALAEG-----LTWLAEGDRVAYEVASGEKGPQARDVHLVRGAEPRTAP 231
Query: 189 K 189
+
Sbjct: 232 Q 232
Score = 37.4 bits (85), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 21/36 (58%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNP 46
G+V YD RGFGFIT +D+F H S I+ P
Sbjct: 254 GVVARYDEDRGFGFITPDAGGDDLFAHVSVIMGSEP 289
>gi|296470653|tpg|DAA12768.1| TPA: cold shock domain protein A short-like [Bos taurus]
Length = 261
Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 51/79 (64%)
Query: 8 TVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGK 67
+V G V + K+G+GFI+ + +ED+FVH ++I + NP + S+ GE V+F++ G+
Sbjct: 67 SVLGSVVRFKEKKGYGFISMHNTQEDVFVHHTAITRKNPCMYRGSVENGETVEFDVVQGE 126
Query: 68 KDIEAINVTGPNGIPVQGA 86
+ +A VTGP P++G+
Sbjct: 127 QGTKAAKVTGPVDAPLKGS 145
Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 51/79 (64%)
Query: 109 TVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGK 168
+V G V + K+G+GFI+ + +ED+FVH ++I + NP + S+ GE V+F++ G+
Sbjct: 67 SVLGSVVRFKEKKGYGFISMHNTQEDVFVHHTAITRKNPCMYRGSVENGETVEFDVVQGE 126
Query: 169 KDIEAINVTGPNGIPVQGA 187
+ +A VTGP P++G+
Sbjct: 127 QGTKAAKVTGPVDAPLKGS 145
>gi|297744636|emb|CBI37898.3| unnamed protein product [Vitis vinifera]
Length = 236
Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 52/79 (65%), Gaps = 5/79 (6%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ ++GFGFIT D +D+FVH+SSI F+SLG GE V+F +
Sbjct: 4 VTGTVKWFNDQKGFGFITPDDGGDDLFVHQSSIRSEG----FRSLGEGEAVEFVVESSDD 59
Query: 69 -DIEAINVTGPNGIPVQGA 86
+A++VTGP+G PVQG+
Sbjct: 60 GRTKAVDVTGPDGNPVQGS 78
Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 52/79 (65%), Gaps = 5/79 (6%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ ++GFGFIT D +D+FVH+SSI F+SLG GE V+F +
Sbjct: 4 VTGTVKWFNDQKGFGFITPDDGGDDLFVHQSSIRSEG----FRSLGEGEAVEFVVESSDD 59
Query: 170 -DIEAINVTGPNGIPVQGA 187
+A++VTGP+G PVQG+
Sbjct: 60 GRTKAVDVTGPDGNPVQGS 78
>gi|414343430|ref|YP_006984951.1| transcriptional regulator cold shock protein [Gluconobacter oxydans
H24]
gi|411028765|gb|AFW02020.1| transcriptional regulator cold shock protein [Gluconobacter oxydans
H24]
Length = 234
Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 81/181 (44%), Gaps = 30/181 (16%)
Query: 13 VKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK---- 68
VK++++++GFGF+ D D+F+H +++ S+ G V IG G K
Sbjct: 66 VKWFNTEKGFGFVELADGSGDVFLHANALGNAG----VSSVNPGATVVVRIGQGPKGRQV 121
Query: 69 ----DIEAINVTGPN-----GIPVQ---GAPKSSSETVSGTYRNDSFFPAVHTVRGIVKF 116
++ P G P Q GAP + R +RG VK+
Sbjct: 122 AEVLSVDESTAEAPRPRAQFGAPQQPRFGAPSAR------PGRPAPDLSDAQDIRGTVKW 175
Query: 117 YDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINV 176
Y+S +GFGFIT +DIFVH S++ + +L G+ ++ + G+K EA +
Sbjct: 176 YNSTKGFGFITPDSGGKDIFVHASALERSQ----LATLDEGQTINVKVVQGQKGPEAAVI 231
Query: 177 T 177
+
Sbjct: 232 S 232
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query: 5 EIHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIG 64
+ +RG VK+Y+S +GFGFIT +DIFVH S++ + +L G+ ++ +
Sbjct: 165 DAQDIRGTVKWYNSTKGFGFITPDSGGKDIFVHASALERSQ----LATLDEGQTINVKVV 220
Query: 65 VGKKDIEAINVT 76
G+K EA ++
Sbjct: 221 QGQKGPEAAVIS 232
>gi|451337258|ref|ZP_21907806.1| cold-shock protein [Amycolatopsis azurea DSM 43854]
gi|449420217|gb|EMD25719.1| cold-shock protein [Amycolatopsis azurea DSM 43854]
Length = 315
Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 64/134 (47%), Gaps = 24/134 (17%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 69
+G V+++D++RGFGF+ D D+FVH S IV K + G+ V F +G
Sbjct: 3 QGTVRWFDAERGFGFLAPEDGSPDVFVHASEIVGDGGAKLLRE---GQAVVFEVGE---- 55
Query: 70 IEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFITRL 129
N GP + V+ +++ + G + G V +Y+ +G+GF +
Sbjct: 56 ----NDRGPQALRVRVTADAATGSAVG-------------LLGTVNWYEPGKGYGFASPD 98
Query: 130 DNKEDIFVHKSSIV 143
DIFVH S+IV
Sbjct: 99 GGGADIFVHSSAIV 112
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 59/135 (43%), Gaps = 7/135 (5%)
Query: 13 VKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEA 72
V +YD +GFGFI D+FVH ++ + L G+ V + + G K +A
Sbjct: 162 VAWYDEDKGFGFINPDSGAGDVFVHARALAEG-----LTWLAEGDRVAYEVASGDKGPQA 216
Query: 73 INVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFITRLDNK 132
+V G Q AP+ + + V G+V YD +GFGFIT
Sbjct: 217 RDVHLVRGTEPQTAPQRPAPAAAAGPAARDV--PVRGGEGVVARYDEDKGFGFITPDAGG 274
Query: 133 EDIFVHKSSIVKMNP 147
+D+F H S I+ P
Sbjct: 275 DDLFAHVSVIMGSEP 289
>gi|381167255|ref|ZP_09876463.1| Cold shock protein [Phaeospirillum molischianum DSM 120]
gi|380683563|emb|CCG41275.1| Cold shock protein [Phaeospirillum molischianum DSM 120]
Length = 206
Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 82/169 (48%), Gaps = 13/169 (7%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V VK++++ +GFGF+ D D F+H S++ + + G + ++G G++
Sbjct: 49 VTATVKWFNASKGFGFVAPADGSPDAFLHISALERAG----LSQVAEGTTLLCDLGAGQR 104
Query: 69 DIEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFITR 128
+ + V + + V A ++ + G R + TV G+VKF+ +++GFGF+
Sbjct: 105 GPQVVFV---HEVDVSTATETPRASAGGPRREERG--PTQTVEGVVKFFSAEKGFGFVAV 159
Query: 129 LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVT 177
+ +D+FVH ++ + +L G+ V +G K +A +V
Sbjct: 160 DEGGKDVFVHAKALERSG----IPTLESGQRVRVTTTLGLKGPQADSVA 204
Score = 38.9 bits (89), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 7 HTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVG 66
TV G+VKF+ +++GFGF+ + +D+FVH ++ + +L G+ V +G
Sbjct: 139 QTVEGVVKFFSAEKGFGFVAVDEGGKDVFVHAKALERSG----IPTLESGQRVRVTTTLG 194
Query: 67 KKDIEAINVT 76
K +A +V
Sbjct: 195 LKGPQADSVA 204
>gi|225427973|ref|XP_002277628.1| PREDICTED: glycine-rich protein 2-like [Vitis vinifera]
Length = 214
Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 51/77 (66%), Gaps = 5/77 (6%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ ++GFGFIT D +D+FVH+SSI + F+SLG GE V+F +
Sbjct: 4 VTGTVKWFNDQKGFGFITPDDGGDDLFVHQSSI----RSEGFRSLGEGEAVEFVVESSDD 59
Query: 69 D-IEAINVTGPNGIPVQ 84
+A++VTGP+G PVQ
Sbjct: 60 GRTKAVDVTGPDGNPVQ 76
Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 51/77 (66%), Gaps = 5/77 (6%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ ++GFGFIT D +D+FVH+SSI + F+SLG GE V+F +
Sbjct: 4 VTGTVKWFNDQKGFGFITPDDGGDDLFVHQSSI----RSEGFRSLGEGEAVEFVVESSDD 59
Query: 170 D-IEAINVTGPNGIPVQ 185
+A++VTGP+G PVQ
Sbjct: 60 GRTKAVDVTGPDGNPVQ 76
>gi|147856673|emb|CAN81359.1| hypothetical protein VITISV_040408 [Vitis vinifera]
Length = 219
Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 51/77 (66%), Gaps = 5/77 (6%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ ++GFGFIT D +D+FVH+SSI + F+SLG GE V+F +
Sbjct: 4 VTGTVKWFNDQKGFGFITPDDGGDDLFVHQSSI----RSEGFRSLGEGEAVEFVVESSDD 59
Query: 69 D-IEAINVTGPNGIPVQ 84
+A++VTGP+G PVQ
Sbjct: 60 GRTKAVDVTGPDGNPVQ 76
Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 51/77 (66%), Gaps = 5/77 (6%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ ++GFGFIT D +D+FVH+SSI + F+SLG GE V+F +
Sbjct: 4 VTGTVKWFNDQKGFGFITPDDGGDDLFVHQSSI----RSEGFRSLGEGEAVEFVVESSDD 59
Query: 170 D-IEAINVTGPNGIPVQ 185
+A++VTGP+G PVQ
Sbjct: 60 GRTKAVDVTGPDGNPVQ 76
>gi|148234211|ref|NP_001091131.1| uncharacterized protein LOC100036881 [Xenopus laevis]
gi|120538253|gb|AAI29585.1| LOC100036881 protein [Xenopus laevis]
Length = 131
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 53/80 (66%), Gaps = 6/80 (7%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD- 69
G K++++++G+GF+T D DIFVH+S+I F+SL GE V+F++ ++
Sbjct: 6 GTCKWFNAEKGYGFLTPDDGSPDIFVHQSTIHADG----FRSLAEGEPVEFSVITDERSG 61
Query: 70 -IEAINVTGPNGIPVQGAPK 88
++A +VTGPNG V+GAP+
Sbjct: 62 KLKAADVTGPNGAAVRGAPR 81
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 53/80 (66%), Gaps = 6/80 (7%)
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD- 170
G K++++++G+GF+T D DIFVH+S+I F+SL GE V+F++ ++
Sbjct: 6 GTCKWFNAEKGYGFLTPDDGSPDIFVHQSTIHADG----FRSLAEGEPVEFSVITDERSG 61
Query: 171 -IEAINVTGPNGIPVQGAPK 189
++A +VTGPNG V+GAP+
Sbjct: 62 KLKAADVTGPNGAAVRGAPR 81
>gi|121631|sp|P27484.1|GRP2_NICSY RecName: Full=Glycine-rich protein 2
gi|19743|emb|CAA42622.1| nsGRP-2 [Nicotiana sylvestris]
Length = 214
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 49/85 (57%), Gaps = 5/85 (5%)
Query: 1 MTKFEIHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVD 60
M + +G VK++ ++GFGFIT D ED+FVH+S I F+SL GE V+
Sbjct: 1 MAEESGQRAKGTVKWFSDQKGFGFITPDDGGEDLFVHQSGIRSEG----FRSLAEGETVE 56
Query: 61 FNIGVGKKD-IEAINVTGPNGIPVQ 84
F + G +A++VTGP+G VQ
Sbjct: 57 FEVESGGDGRTKAVDVTGPDGAAVQ 81
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+G VK++ ++GFGFIT D ED+FVH+S I F+SL GE V+F + G
Sbjct: 9 AKGTVKWFSDQKGFGFITPDDGGEDLFVHQSGIRSEG----FRSLAEGETVEFEVESGGD 64
Query: 170 D-IEAINVTGPNGIPVQ 185
+A++VTGP+G VQ
Sbjct: 65 GRTKAVDVTGPDGAAVQ 81
>gi|358341567|dbj|GAA49208.1| nuclease-sensitive element-binding protein 1, partial [Clonorchis
sinensis]
Length = 290
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
VRG VK+Y R +GFI+R D+ D+FVH+S I + + SL GE V+FN+
Sbjct: 9 VRGHVKWYSVARRYGFISRNDDGGDLFVHRSVISSCS--RRIPSLRSGEEVEFNVVETNH 66
Query: 69 DIEAINVTGPNGIPVQG 85
+EA VTGP G PV+G
Sbjct: 67 GVEANYVTGPGGQPVKG 83
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
VRG VK+Y R +GFI+R D+ D+FVH+S I + + SL GE V+FN+
Sbjct: 9 VRGHVKWYSVARRYGFISRNDDGGDLFVHRSVISSCS--RRIPSLRSGEEVEFNVVETNH 66
Query: 170 DIEAINVTGPNGIPVQG 186
+EA VTGP G PV+G
Sbjct: 67 GVEANYVTGPGGQPVKG 83
>gi|332187878|ref|ZP_08389611.1| Cold-shock DNA-binding domain protein [Sphingomonas sp. S17]
gi|332012039|gb|EGI54111.1| Cold-shock DNA-binding domain protein [Sphingomonas sp. S17]
Length = 284
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 83/175 (47%), Gaps = 24/175 (13%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLG-EIVDFNIGVGKKD 69
G+VKF+++++GFGF+ R D ED+FVH S++ + + LG +VD G+
Sbjct: 106 GVVKFFNAQKGFGFVVRDDGGEDVFVHISAVEQAGLTGLAEGQPLGFTLVDRG---GRIS 162
Query: 70 IEAINVTGPNGIPVQG-APKSSSETVSGTYRNDSFFPAV--------------HTVRGIV 114
+ + G +PVQ AP+ E G R+ G V
Sbjct: 163 ATELKIEGEP-LPVQERAPREPREGGFGGDRDRGPRGGAAGGFGGAPQRQLTGEKATGTV 221
Query: 115 KFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
KF+++ +GFGFI R D + D FVH S++ + SL G+ + F I V ++
Sbjct: 222 KFFNAMKGFGFIQRDDGQPDAFVHISAVERAG----MGSLNEGDRLQFEIEVDRR 272
>gi|357613401|gb|EHJ68487.1| hypothetical protein KGM_16662 [Danaus plexippus]
Length = 179
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 50/81 (61%), Gaps = 4/81 (4%)
Query: 111 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 170
RG K+++ +G+GFIT D +D+FVH+ S+++M F+SLG E+V+F K
Sbjct: 27 RGRCKWFNVAKGWGFITPDDGGQDVFVHQ-SVIQMT---GFRSLGDEEVVEFECKESDKG 82
Query: 171 IEAINVTGPNGIPVQGAPKVP 191
+EA V GP+ + QG+ + P
Sbjct: 83 LEATRVCGPSSVDCQGSHRRP 103
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 48/77 (62%), Gaps = 4/77 (5%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 69
RG K+++ +G+GFIT D +D+FVH+ S+++M F+SLG E+V+F K
Sbjct: 27 RGRCKWFNVAKGWGFITPDDGGQDVFVHQ-SVIQMT---GFRSLGDEEVVEFECKESDKG 82
Query: 70 IEAINVTGPNGIPVQGA 86
+EA V GP+ + QG+
Sbjct: 83 LEATRVCGPSSVDCQGS 99
>gi|209877068|ref|XP_002139976.1| cold-shock DNA-binding domain-containing protein [Cryptosporidium
muris RN66]
gi|209555582|gb|EEA05627.1| cold-shock DNA-binding domain-containing protein [Cryptosporidium
muris RN66]
Length = 119
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 48/76 (63%), Gaps = 5/76 (6%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK-D 69
G+ K++DS +GFGFIT D EDIFVH+ +I + F+SLG E V++ + K
Sbjct: 5 GVCKWFDSAKGFGFITPDDGSEDIFVHQQNI----KVEGFRSLGQAERVEYEVETDDKGR 60
Query: 70 IEAINVTGPNGIPVQG 85
+A+NV GPNG V+G
Sbjct: 61 RKAVNVCGPNGAAVKG 76
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 48/76 (63%), Gaps = 5/76 (6%)
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK-D 170
G+ K++DS +GFGFIT D EDIFVH+ +I + F+SLG E V++ + K
Sbjct: 5 GVCKWFDSAKGFGFITPDDGSEDIFVHQQNI----KVEGFRSLGQAERVEYEVETDDKGR 60
Query: 171 IEAINVTGPNGIPVQG 186
+A+NV GPNG V+G
Sbjct: 61 RKAVNVCGPNGAAVKG 76
>gi|209736846|gb|ACI69292.1| Nuclease-sensitive element-binding protein 1 [Salmo salar]
gi|303658085|gb|ADM15905.1| Nuclease-sensitive element-binding protein 1 [Salmo salar]
Length = 194
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 38/49 (77%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGE 57
V G VK+++ + G+GFI R D KED+FVH+++I K NPKK+ +S+G GE
Sbjct: 39 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPKKYLRSVGDGE 87
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 38/49 (77%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGE 158
V G VK+++ + G+GFI R D KED+FVH+++I K NPKK+ +S+G GE
Sbjct: 39 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPKKYLRSVGDGE 87
>gi|300022575|ref|YP_003755186.1| cold-shock DNA-binding domain-containing protein [Hyphomicrobium
denitrificans ATCC 51888]
gi|299524396|gb|ADJ22865.1| cold-shock DNA-binding domain protein [Hyphomicrobium denitrificans
ATCC 51888]
Length = 199
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 80/181 (44%), Gaps = 21/181 (11%)
Query: 5 EIHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIG 64
E+ V G++K++D+ +GFGFI + DI +H + + FQ+ G V +
Sbjct: 29 EVFEVAGMIKWFDASKGFGFIVPDNGLPDILLHVTCLRAGG----FQTAYEGARVHCEVL 84
Query: 65 VGKKDIEA---INVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKR 121
K ++A +++ I P+ + V P R VK+++ R
Sbjct: 85 RRSKGMQAFRILSMDESTAIHPSQLPQRTHVIVQ---------PESDWERAYVKWFNRVR 135
Query: 122 GFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNG 181
GFGF+TR + DIF H ++ + F L G+IV G G K A + P+G
Sbjct: 136 GFGFLTRGEGTPDIFCHMETLRRFG----FTELRPGQIVQVRWGYGSKGCMAAELR-PDG 190
Query: 182 I 182
+
Sbjct: 191 V 191
>gi|300787569|ref|YP_003767860.1| cold shock protein CspA [Amycolatopsis mediterranei U32]
gi|384150947|ref|YP_005533763.1| cold shock protein CspA [Amycolatopsis mediterranei S699]
gi|399539452|ref|YP_006552114.1| cold shock protein CspA [Amycolatopsis mediterranei S699]
gi|299797083|gb|ADJ47458.1| cold shock protein CspA [Amycolatopsis mediterranei U32]
gi|340529101|gb|AEK44306.1| cold shock protein CspA [Amycolatopsis mediterranei S699]
gi|398320222|gb|AFO79169.1| cold shock protein CspA [Amycolatopsis mediterranei S699]
Length = 315
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 65/134 (48%), Gaps = 24/134 (17%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 69
+G V+++D++RGFGF+ D+ D+FVH S IV K + G+ V F +G
Sbjct: 3 QGTVRWFDAERGFGFLAPEDDSPDVFVHASEIVGDGGAKVLRE---GQAVVFEVGE---- 55
Query: 70 IEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFITRL 129
N GP + V+ +++ + G + G + +Y+ +G+GF +
Sbjct: 56 ----NDRGPQALRVRVTADAATGSAVG-------------LLGTINWYEPGKGYGFASPD 98
Query: 130 DNKEDIFVHKSSIV 143
DIFVH S+IV
Sbjct: 99 GGGADIFVHSSAIV 112
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 59/138 (42%), Gaps = 13/138 (9%)
Query: 13 VKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEA 72
V +YD +GFGFI D+FVH ++ + L G+ V + + G K +A
Sbjct: 162 VAWYDEDKGFGFINPDSGAGDVFVHARALAEG-----LTWLAEGDRVAYEVASGDKGPQA 216
Query: 73 INVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRG---IVKFYDSKRGFGFITRL 129
+V V+GA ++ VRG +V YD RGFGFIT
Sbjct: 217 RDVH-----LVRGAEPQTAPQRPAPAAAAGPAARDVPVRGGEGVVARYDGDRGFGFITPD 271
Query: 130 DNKEDIFVHKSSIVKMNP 147
+D+F H S I+ P
Sbjct: 272 AGGDDLFAHASVIMGSEP 289
Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 21/36 (58%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNP 46
G+V YD RGFGFIT +D+F H S I+ P
Sbjct: 254 GVVARYDGDRGFGFITPDAGGDDLFAHASVIMGSEP 289
>gi|452954482|gb|EME59882.1| cold shock protein CspA [Amycolatopsis decaplanina DSM 44594]
Length = 315
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 64/134 (47%), Gaps = 24/134 (17%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 69
+G V+++D++RGFGF+ D D+FVH S IV K + G+ V F +G
Sbjct: 3 QGTVRWFDAERGFGFLAPEDGSPDVFVHASEIVGDGGAKVLRE---GQAVVFEVGE---- 55
Query: 70 IEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFITRL 129
N GP + V+ +++ + G + G V +Y+ +G+GF +
Sbjct: 56 ----NDRGPQALRVRVTADAATGSAVG-------------LLGTVNWYEPGKGYGFASPD 98
Query: 130 DNKEDIFVHKSSIV 143
DIFVH S+IV
Sbjct: 99 GGGADIFVHSSAIV 112
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 60/135 (44%), Gaps = 7/135 (5%)
Query: 13 VKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEA 72
V +YD +GFGFI D+FVH ++ + L G+ V + + G K +A
Sbjct: 162 VAWYDEDKGFGFINPDSGAGDVFVHARALAEG-----LTWLAEGDRVAYEVASGDKGPQA 216
Query: 73 INVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFITRLDNK 132
+V G Q AP+ S+ + V G+V YD RGFGFIT
Sbjct: 217 RDVHLVRGTEPQTAPQRSAPAAAAGPAARDV--PVRGGEGVVARYDGDRGFGFITPDAGG 274
Query: 133 EDIFVHKSSIVKMNP 147
+D+F H S I+ P
Sbjct: 275 DDLFAHVSVIMGSEP 289
Score = 37.4 bits (85), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 21/36 (58%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNP 46
G+V YD RGFGFIT +D+F H S I+ P
Sbjct: 254 GVVARYDGDRGFGFITPDAGGDDLFAHVSVIMGSEP 289
>gi|119616611|gb|EAW96205.1| cold shock domain protein A, isoform CRA_c [Homo sapiens]
Length = 142
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 50/68 (73%), Gaps = 1/68 (1%)
Query: 28 LDNKEDIFVHKSSIVKMN-PKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGA 86
+ ++ I+++KS+ +K N P+K+ +S+G GE V+F++ G+K EA NVTGP+G+PV+G+
Sbjct: 2 VQRQKWIWIYKSTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGS 61
Query: 87 PKSSSETV 94
++ T+
Sbjct: 62 RYAADRTL 69
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 46/60 (76%), Gaps = 1/60 (1%)
Query: 129 LDNKEDIFVHKSSIVKMN-PKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGA 187
+ ++ I+++KS+ +K N P+K+ +S+G GE V+F++ G+K EA NVTGP+G+PV+G+
Sbjct: 2 VQRQKWIWIYKSTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGS 61
>gi|296128179|ref|YP_003635429.1| cold-shock protein [Cellulomonas flavigena DSM 20109]
gi|296019994|gb|ADG73230.1| cold-shock DNA-binding domain protein [Cellulomonas flavigena DSM
20109]
Length = 418
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 66/131 (50%), Gaps = 26/131 (19%)
Query: 13 VKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEA 72
V+++D++RGFGF+ D+ ED+FVH S I+ P+ + G+ V++ +G G +
Sbjct: 6 VRWFDAERGFGFLALGDDAEDLFVHASEIIG-EPRVLRE----GQEVEYELGEGDR---- 56
Query: 73 INVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFITRLDNK 132
P++ V+G D+ + G V +Y+ +G+GF+T
Sbjct: 57 -------------GPQARKVRVTGDVAADATLGQL----GTVSWYEPAKGYGFLTPDGGG 99
Query: 133 EDIFVHKSSIV 143
+IFVH S++V
Sbjct: 100 AEIFVHSSAVV 110
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 66/139 (47%), Gaps = 12/139 (8%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 70
G V +YD+++GFGF+ D ED+F H S+V L G+ V F++ G+K
Sbjct: 158 GTVTWYDAEKGFGFVAPDDGGEDVFAHAKSLVGG-----LSELVEGDRVTFDVVDGEKGP 212
Query: 71 EAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPA--VHTVRGIVKFYDSKRGFGFITR 128
+A ++ V GAP+S+ G A V G V YD+ RGFGFI
Sbjct: 213 QARDIR-----LVGGAPRSAPAPRGGRPAGRPGGSAAPVRGGEGTVARYDADRGFGFIRP 267
Query: 129 LDNKEDIFVHKSSIVKMNP 147
+D+FVH S + P
Sbjct: 268 DAGGDDLFVHVSVVRGDEP 286
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 77/173 (44%), Gaps = 27/173 (15%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 70
G V +Y+ +G+GF+T +IFVH S++V L G+ V F + G+K
Sbjct: 79 GTVSWYEPAKGYGFLTPDGGGAEIFVHSSAVVGGG------VLHDGQRVAFLVVDGEKGP 132
Query: 71 EAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFITRLD 130
+A ++ P + +G D G V +YD+++GFGF+ D
Sbjct: 133 QADHLL----------PLGAQAAPAGQPAGDD------GADGTVTWYDAEKGFGFVAPDD 176
Query: 131 NKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIP 183
ED+F H S+V L G+ V F++ G+K +A ++ G P
Sbjct: 177 GGEDVFAHAKSLVGG-----LSELVEGDRVTFDVVDGEKGPQARDIRLVGGAP 224
>gi|453331326|dbj|GAC86905.1| transcriptional regulator cold shock protein [Gluconobacter
thailandicus NBRC 3255]
Length = 234
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 80/181 (44%), Gaps = 30/181 (16%)
Query: 13 VKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK---- 68
VK++++++GFGF+ D D+F+H + + S+ G V IG G K
Sbjct: 66 VKWFNTEKGFGFVELADGSGDVFLHANDLGNAG----VSSVNPGATVVVRIGQGPKGRQV 121
Query: 69 ----DIEAINVTGPN-----GIPVQ---GAPKSSSETVSGTYRNDSFFPAVHTVRGIVKF 116
++ P G P Q GAP + R +RG VK+
Sbjct: 122 AEVLSVDESTAEAPRPRAQFGAPQQPRFGAPSAR------PGRPAPDLSDAQDIRGTVKW 175
Query: 117 YDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINV 176
Y+S +GFGFIT +DIFVH S++ + +L G+ ++ + G+K EA +
Sbjct: 176 YNSTKGFGFITPDSGGKDIFVHASALERSQ----LATLDEGQTINVKVVQGQKGPEAAVI 231
Query: 177 T 177
+
Sbjct: 232 S 232
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query: 5 EIHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIG 64
+ +RG VK+Y+S +GFGFIT +DIFVH S++ + +L G+ ++ +
Sbjct: 165 DAQDIRGTVKWYNSTKGFGFITPDSGGKDIFVHASALERSQ----LATLDEGQTINVKVV 220
Query: 65 VGKKDIEAINVT 76
G+K EA ++
Sbjct: 221 QGQKGPEAAVIS 232
>gi|223973253|gb|ACN30814.1| unknown [Zea mays]
Length = 444
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 51/83 (61%), Gaps = 5/83 (6%)
Query: 106 AVHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIG 165
A RG VK+++ +GFGFI+ D ED+FVH+SSI + F+SL GE V+F++
Sbjct: 3 AAARQRGTVKWFNDTKGFGFISPEDGSEDLFVHQSSIK----SEGFRSLAEGEEVEFSVS 58
Query: 166 VGKK-DIEAINVTGPNGIPVQGA 187
G +A++VTGP+G G+
Sbjct: 59 EGDDGRTKAVDVTGPDGSSASGS 81
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 50/78 (64%), Gaps = 5/78 (6%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK- 68
RG VK+++ +GFGFI+ D ED+FVH+SSI + F+SL GE V+F++ G
Sbjct: 8 RGTVKWFNDTKGFGFISPEDGSEDLFVHQSSIK----SEGFRSLAEGEEVEFSVSEGDDG 63
Query: 69 DIEAINVTGPNGIPVQGA 86
+A++VTGP+G G+
Sbjct: 64 RTKAVDVTGPDGSSASGS 81
>gi|401400662|ref|XP_003880829.1| lin-28 homolog B, related [Neospora caninum Liverpool]
gi|325115241|emb|CBZ50796.1| lin-28 homolog B, related [Neospora caninum Liverpool]
Length = 133
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 49/77 (63%), Gaps = 6/77 (7%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 69
RG K++DSK+G+GFIT D D+FVH+S I + F++L GE V+F I G
Sbjct: 5 RGTCKWFDSKKGYGFITAEDGT-DLFVHQSEI----RAEGFRNLAEGEQVEFVIQTGNDG 59
Query: 70 I-EAINVTGPNGIPVQG 85
+A+NVTGPNG VQG
Sbjct: 60 RKKAVNVTGPNGSYVQG 76
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 49/77 (63%), Gaps = 6/77 (7%)
Query: 111 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 170
RG K++DSK+G+GFIT D D+FVH+S I + F++L GE V+F I G
Sbjct: 5 RGTCKWFDSKKGYGFITAEDGT-DLFVHQSEI----RAEGFRNLAEGEQVEFVIQTGNDG 59
Query: 171 I-EAINVTGPNGIPVQG 186
+A+NVTGPNG VQG
Sbjct: 60 RKKAVNVTGPNGSYVQG 76
>gi|308498439|ref|XP_003111406.1| hypothetical protein CRE_03641 [Caenorhabditis remanei]
gi|308240954|gb|EFO84906.1| hypothetical protein CRE_03641 [Caenorhabditis remanei]
Length = 264
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 53/79 (67%), Gaps = 1/79 (1%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFF-QSLGLGEIVDFNIGVGK 67
++G VK+Y R +GFI+R D ++D+FVH+++I K + +KF+ ++L E V F++ GK
Sbjct: 62 LQGKVKWYSVLRRYGFISRDDGEKDVFVHQTAIAKSDTEKFYLRTLADEEEVLFDLVEGK 121
Query: 68 KDIEAINVTGPNGIPVQGA 86
EA NV+GP G V G+
Sbjct: 122 NGPEAANVSGPAGENVVGS 140
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 53/79 (67%), Gaps = 1/79 (1%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFF-QSLGLGEIVDFNIGVGK 168
++G VK+Y R +GFI+R D ++D+FVH+++I K + +KF+ ++L E V F++ GK
Sbjct: 62 LQGKVKWYSVLRRYGFISRDDGEKDVFVHQTAIAKSDTEKFYLRTLADEEEVLFDLVEGK 121
Query: 169 KDIEAINVTGPNGIPVQGA 187
EA NV+GP G V G+
Sbjct: 122 NGPEAANVSGPAGENVVGS 140
>gi|193875878|gb|ACF24575.1| glycine-rich nucleic acid binding protein [Gymnochlora stellata]
Length = 290
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 54/80 (67%), Gaps = 9/80 (11%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGV---GK 67
G K++++ +G+GFI + K+DIFVH+++I + F+SL GE V+F++ V G+
Sbjct: 26 GTCKWFNTVKGYGFILPQEGKDDIFVHQTAIKAVG----FRSLAEGEQVEFDVEVDATGR 81
Query: 68 KDIEAINVTGPNGIPVQGAP 87
K +A NVTGPNG V+GAP
Sbjct: 82 K--KARNVTGPNGAYVRGAP 99
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 54/80 (67%), Gaps = 9/80 (11%)
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGV---GK 168
G K++++ +G+GFI + K+DIFVH+++I + F+SL GE V+F++ V G+
Sbjct: 26 GTCKWFNTVKGYGFILPQEGKDDIFVHQTAIKAVG----FRSLAEGEQVEFDVEVDATGR 81
Query: 169 KDIEAINVTGPNGIPVQGAP 188
K +A NVTGPNG V+GAP
Sbjct: 82 K--KARNVTGPNGAYVRGAP 99
>gi|297801940|ref|XP_002868854.1| hypothetical protein ARALYDRAFT_912317 [Arabidopsis lyrata subsp.
lyrata]
gi|297314690|gb|EFH45113.1| hypothetical protein ARALYDRAFT_912317 [Arabidopsis lyrata subsp.
lyrata]
Length = 195
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 52/77 (67%), Gaps = 5/77 (6%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 69
+G VK++D+++GFGFIT D +D+FVH+SSI + F+SL E V+F + +
Sbjct: 12 KGSVKWFDTQKGFGFITPDDGGDDLFVHQSSIR----SEGFRSLAADEAVEFEVEMDNNS 67
Query: 70 I-EAINVTGPNGIPVQG 85
+AI+V+GP+G+PV G
Sbjct: 68 RPKAIDVSGPDGVPVLG 84
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 52/77 (67%), Gaps = 5/77 (6%)
Query: 111 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 170
+G VK++D+++GFGFIT D +D+FVH+SSI + F+SL E V+F + +
Sbjct: 12 KGSVKWFDTQKGFGFITPDDGGDDLFVHQSSIR----SEGFRSLAADEAVEFEVEMDNNS 67
Query: 171 I-EAINVTGPNGIPVQG 186
+AI+V+GP+G+PV G
Sbjct: 68 RPKAIDVSGPDGVPVLG 84
>gi|242063850|ref|XP_002453214.1| hypothetical protein SORBIDRAFT_04g001720 [Sorghum bicolor]
gi|241933045|gb|EES06190.1| hypothetical protein SORBIDRAFT_04g001720 [Sorghum bicolor]
Length = 251
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 49/77 (63%), Gaps = 5/77 (6%)
Query: 106 AVHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIG 165
A RG VK+++ +GFGFI+ D ED+FVH+SSI + F+SL GE V+F++
Sbjct: 3 AAARQRGTVKWFNDTKGFGFISPEDGSEDLFVHQSSI----KSEGFRSLAEGEEVEFSVS 58
Query: 166 VGKKD-IEAINVTGPNG 181
G +A++VTGP+G
Sbjct: 59 EGDDGRTKAVDVTGPDG 75
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 48/72 (66%), Gaps = 5/72 (6%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 69
RG VK+++ +GFGFI+ D ED+FVH+SSI + F+SL GE V+F++ G
Sbjct: 8 RGTVKWFNDTKGFGFISPEDGSEDLFVHQSSI----KSEGFRSLAEGEEVEFSVSEGDDG 63
Query: 70 -IEAINVTGPNG 80
+A++VTGP+G
Sbjct: 64 RTKAVDVTGPDG 75
>gi|125560025|gb|EAZ05473.1| hypothetical protein OsI_27689 [Oryza sativa Indica Group]
Length = 193
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 50/77 (64%), Gaps = 5/77 (6%)
Query: 106 AVHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIG 165
A V+G VK++D+ +GFGFIT D ED+FVH+SS+ ++SL G++V+F++G
Sbjct: 2 ASERVKGTVKWFDATKGFGFITPDDGGEDLFVHQSSL----KSDGYRSLNDGDVVEFSVG 57
Query: 166 VGKKD-IEAINVTGPNG 181
G +A++VT P G
Sbjct: 58 SGNDGRTKAVDVTAPGG 74
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 5/73 (6%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V+G VK++D+ +GFGFIT D ED+FVH+SS+ ++SL G++V+F++G G
Sbjct: 6 VKGTVKWFDATKGFGFITPDDGGEDLFVHQSSL----KSDGYRSLNDGDVVEFSVGSGND 61
Query: 69 D-IEAINVTGPNG 80
+A++VT P G
Sbjct: 62 GRTKAVDVTAPGG 74
>gi|326491571|dbj|BAJ94263.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 191
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 51/77 (66%), Gaps = 5/77 (6%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
++G VK+++ +GFGFI+ D ED+FVH+SSI F+SL GE+V+F++ G
Sbjct: 7 MKGTVKWFNDTKGFGFISPDDGSEDLFVHQSSI----KADGFRSLAEGEVVEFSVSEGDD 62
Query: 69 D-IEAINVTGPNGIPVQ 84
+A++VTGP+G VQ
Sbjct: 63 GRTKAVDVTGPDGSFVQ 79
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 51/77 (66%), Gaps = 5/77 (6%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
++G VK+++ +GFGFI+ D ED+FVH+SSI F+SL GE+V+F++ G
Sbjct: 7 MKGTVKWFNDTKGFGFISPDDGSEDLFVHQSSI----KADGFRSLAEGEVVEFSVSEGDD 62
Query: 170 D-IEAINVTGPNGIPVQ 185
+A++VTGP+G VQ
Sbjct: 63 GRTKAVDVTGPDGSFVQ 79
>gi|326502466|dbj|BAJ95296.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326507234|dbj|BAJ95694.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 264
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 51/77 (66%), Gaps = 5/77 (6%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
++G VK+++ +GFGFI+ D ED+FVH+SSI F+SL GE+V+F++ G
Sbjct: 7 MKGTVKWFNDTKGFGFISPDDGSEDLFVHQSSI----KADGFRSLAEGEVVEFSVSEGDD 62
Query: 69 D-IEAINVTGPNGIPVQ 84
+A++VTGP+G VQ
Sbjct: 63 GRTKAVDVTGPDGSFVQ 79
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 51/77 (66%), Gaps = 5/77 (6%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
++G VK+++ +GFGFI+ D ED+FVH+SSI F+SL GE+V+F++ G
Sbjct: 7 MKGTVKWFNDTKGFGFISPDDGSEDLFVHQSSI----KADGFRSLAEGEVVEFSVSEGDD 62
Query: 170 D-IEAINVTGPNGIPVQ 185
+A++VTGP+G VQ
Sbjct: 63 GRTKAVDVTGPDGSFVQ 79
>gi|238015158|gb|ACR38614.1| unknown [Zea mays]
Length = 240
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 49/77 (63%), Gaps = 5/77 (6%)
Query: 106 AVHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIG 165
A RG VK+++ +GFGFI+ D ED+FVH+SSI + F+SL GE V+F++
Sbjct: 3 AAARQRGTVKWFNDTKGFGFISPEDGSEDLFVHQSSI----KSEGFRSLAEGEEVEFSVS 58
Query: 166 VGKKD-IEAINVTGPNG 181
G +A++VTGP+G
Sbjct: 59 EGDDGRTKAVDVTGPDG 75
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 48/72 (66%), Gaps = 5/72 (6%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 69
RG VK+++ +GFGFI+ D ED+FVH+SSI + F+SL GE V+F++ G
Sbjct: 8 RGTVKWFNDTKGFGFISPEDGSEDLFVHQSSI----KSEGFRSLAEGEEVEFSVSEGDDG 63
Query: 70 -IEAINVTGPNG 80
+A++VTGP+G
Sbjct: 64 RTKAVDVTGPDG 75
>gi|284990776|ref|YP_003409330.1| cold-shock DNA-binding domain-containing protein [Geodermatophilus
obscurus DSM 43160]
gi|284064021|gb|ADB74959.1| cold-shock DNA-binding domain protein [Geodermatophilus obscurus
DSM 43160]
Length = 310
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 87/190 (45%), Gaps = 34/190 (17%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 69
+G VK++++++GFGFI D +D+FVH S+I + F++L G+ V+F G++
Sbjct: 3 QGTVKWFNAEKGFGFIEPDDGGQDVFVHFSAIAD---EGGFRTLDEGQQVEFEASQGQRG 59
Query: 70 IEAINVTGPNGIPVQGAPKSSS-----------------------ETVSGTYRNDSFFPA 106
++A +V PV GAP+
Sbjct: 60 LQADSVR-----PVGGAPRRQDAGYGRERDRGRDDRDRGRGRDDDRGRGRDSERGRSSSR 114
Query: 107 VHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGV 166
G V ++D+ +GFGFI ++ D+FVH S I ++SL G+ V+F +
Sbjct: 115 GGRSTGTVTWFDNDKGFGFIQPDEDGPDVFVHFSQIADSGG---YRSLDEGQRVEFAVTQ 171
Query: 167 GKKDIEAINV 176
G++ +A +V
Sbjct: 172 GQRGPQAEDV 181
Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 89/192 (46%), Gaps = 34/192 (17%)
Query: 13 VKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEA 72
V ++D+ +GFGFI ++ D+FVH S I ++SL G+ V+F + G++ +A
Sbjct: 122 VTWFDNDKGFGFIQPDEDGPDVFVHFSQIADSGG---YRSLDEGQRVEFAVTQGQRGPQA 178
Query: 73 INV-------------TGPNGIPVQGAPKSSSETV-SGTYRN-DSFFPAVHT-------- 109
+V GP G + SG YR+ DS A
Sbjct: 179 EDVRSAEGGGGGGHRDAGPRGGGYRDRDGGGYRDRDSGGYRDRDSGRDAGRGGAGAGRRP 238
Query: 110 -----VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 164
G VK++++++GFGFI D D+FVH S+I + + ++SL G+ V+F
Sbjct: 239 SGGGRANGTVKWFNAEKGFGFIEADDGGPDVFVHFSAI---SDRGGYRSLDEGQRVEFEA 295
Query: 165 GVGKKDIEAINV 176
G++ +A V
Sbjct: 296 SDGQRGRQADRV 307
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 48/79 (60%), Gaps = 8/79 (10%)
Query: 111 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 170
+G VK++++++GFGFI D +D+FVH S+I F++L G+ V+F G++
Sbjct: 3 QGTVKWFNAEKGFGFIEPDDGGQDVFVHFSAIADEGG---FRTLDEGQQVEFEASQGQRG 59
Query: 171 IEAINVTGPNGIPVQGAPK 189
++A +V PV GAP+
Sbjct: 60 LQADSVR-----PVGGAPR 73
Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 70
G VK++++++GFGFI D D+FVH S+I + + ++SL G+ V+F G++
Sbjct: 246 GTVKWFNAEKGFGFIEADDGGPDVFVHFSAI---SDRGGYRSLDEGQRVEFEASDGQRGR 302
Query: 71 EAINV 75
+A V
Sbjct: 303 QADRV 307
>gi|363543235|ref|NP_001241832.1| uncharacterized protein LOC100857032 [Zea mays]
gi|224033945|gb|ACN36048.1| unknown [Zea mays]
gi|413926630|gb|AFW66562.1| hypothetical protein ZEAMMB73_047398 [Zea mays]
Length = 249
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 49/77 (63%), Gaps = 5/77 (6%)
Query: 106 AVHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIG 165
A RG VK+++ +GFGFI+ D ED+FVH+SSI + F+SL GE V+F++
Sbjct: 3 AAARQRGTVKWFNDTKGFGFISPEDGSEDLFVHQSSI----KSEGFRSLAEGEEVEFSVS 58
Query: 166 VGKKD-IEAINVTGPNG 181
G +A++VTGP+G
Sbjct: 59 EGDDGRTKAVDVTGPDG 75
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 48/72 (66%), Gaps = 5/72 (6%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 69
RG VK+++ +GFGFI+ D ED+FVH+SSI + F+SL GE V+F++ G
Sbjct: 8 RGTVKWFNDTKGFGFISPEDGSEDLFVHQSSI----KSEGFRSLAEGEEVEFSVSEGDDG 63
Query: 70 -IEAINVTGPNG 80
+A++VTGP+G
Sbjct: 64 RTKAVDVTGPDG 75
>gi|410943196|ref|ZP_11374937.1| transcriptional regulator cold shock protein [Gluconobacter
frateurii NBRC 101659]
Length = 234
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 79/175 (45%), Gaps = 18/175 (10%)
Query: 13 VKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK---- 68
VK++++++GFGF+ D D+F+H +++ S+ G V IG G K
Sbjct: 66 VKWFNTEKGFGFVELADGSGDVFLHANALGNAG----VSSVNPGATVVVRIGQGPKGRQV 121
Query: 69 ----DIEAINVTGPNGIPVQGAPKSS--SETVSGTYRNDSFFPAVHTVRGIVKFYDSKRG 122
++ P GAP+ + R +RG VK+Y+S +G
Sbjct: 122 AEVLSVDESTAEAPRPRAQFGAPQQPRFGGPSARPGRPAPDLSDAQDIRGTVKWYNSTKG 181
Query: 123 FGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVT 177
FGFIT +DIFVH S++ + +L G+ ++ + G+K EA ++
Sbjct: 182 FGFITPDSGGKDIFVHASALERSQ----LATLDEGQTINVKVVQGQKGPEAAVIS 232
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query: 5 EIHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIG 64
+ +RG VK+Y+S +GFGFIT +DIFVH S++ + +L G+ ++ +
Sbjct: 165 DAQDIRGTVKWYNSTKGFGFITPDSGGKDIFVHASALERSQ----LATLDEGQTINVKVV 220
Query: 65 VGKKDIEAINVT 76
G+K EA ++
Sbjct: 221 QGQKGPEAAVIS 232
>gi|413926631|gb|AFW66563.1| hypothetical protein ZEAMMB73_047398 [Zea mays]
Length = 188
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 49/77 (63%), Gaps = 5/77 (6%)
Query: 106 AVHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIG 165
A RG VK+++ +GFGFI+ D ED+FVH+SSI + F+SL GE V+F++
Sbjct: 3 AAARQRGTVKWFNDTKGFGFISPEDGSEDLFVHQSSI----KSEGFRSLAEGEEVEFSVS 58
Query: 166 VGKKD-IEAINVTGPNG 181
G +A++VTGP+G
Sbjct: 59 EGDDGRTKAVDVTGPDG 75
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 48/72 (66%), Gaps = 5/72 (6%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 69
RG VK+++ +GFGFI+ D ED+FVH+SSI + F+SL GE V+F++ G
Sbjct: 8 RGTVKWFNDTKGFGFISPEDGSEDLFVHQSSI----KSEGFRSLAEGEEVEFSVSEGDDG 63
Query: 70 -IEAINVTGPNG 80
+A++VTGP+G
Sbjct: 64 RTKAVDVTGPDG 75
>gi|223946111|gb|ACN27139.1| unknown [Zea mays]
Length = 187
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 49/77 (63%), Gaps = 5/77 (6%)
Query: 106 AVHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIG 165
A RG VK+++ +GFGFI+ D ED+FVH+SSI + F+SL GE V+F++
Sbjct: 3 AAARQRGTVKWFNDTKGFGFISPEDGSEDLFVHQSSI----KSEGFRSLAEGEEVEFSVS 58
Query: 166 VGKKD-IEAINVTGPNG 181
G +A++VTGP+G
Sbjct: 59 EGDDGRTKAVDVTGPDG 75
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 48/72 (66%), Gaps = 5/72 (6%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 69
RG VK+++ +GFGFI+ D ED+FVH+SSI + F+SL GE V+F++ G
Sbjct: 8 RGTVKWFNDTKGFGFISPEDGSEDLFVHQSSI----KSEGFRSLAEGEEVEFSVSEGDDG 63
Query: 70 -IEAINVTGPNG 80
+A++VTGP+G
Sbjct: 64 RTKAVDVTGPDG 75
>gi|302824155|ref|XP_002993723.1| hypothetical protein SELMODRAFT_187582 [Selaginella moellendorffii]
gi|300138447|gb|EFJ05215.1| hypothetical protein SELMODRAFT_187582 [Selaginella moellendorffii]
Length = 165
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 51/85 (60%), Gaps = 5/85 (5%)
Query: 106 AVHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIG 165
A G VK+++S +GFGFIT D ED+FVH+SSI F+SL GE V+F I
Sbjct: 4 AAEKKSGKVKWFNSAKGFGFITPDDGGEDLFVHQSSIHADG----FRSLKDGEAVEFTID 59
Query: 166 VGKKD-IEAINVTGPNGIPVQGAPK 189
+ +A++VTGP G VQGA +
Sbjct: 60 RSEDGRTKALDVTGPEGSFVQGASR 84
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 50/79 (63%), Gaps = 5/79 (6%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD- 69
G VK+++S +GFGFIT D ED+FVH+SSI F+SL GE V+F I +
Sbjct: 10 GKVKWFNSAKGFGFITPDDGGEDLFVHQSSIHADG----FRSLKDGEAVEFTIDRSEDGR 65
Query: 70 IEAINVTGPNGIPVQGAPK 88
+A++VTGP G VQGA +
Sbjct: 66 TKALDVTGPEGSFVQGASR 84
>gi|303285238|ref|XP_003061909.1| cold-shock DNA binding protein [Micromonas pusilla CCMP1545]
gi|226456320|gb|EEH53621.1| cold-shock DNA binding protein [Micromonas pusilla CCMP1545]
Length = 121
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 54/84 (64%), Gaps = 9/84 (10%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD- 69
G VK++++++GFGFIT D E+IFVH+S+I F+SL E V++ V K D
Sbjct: 6 GKVKWFNTQKGFGFITPDDGSEEIFVHQSAIHAEG----FRSLREEEPVEYT--VEKSDD 59
Query: 70 --IEAINVTGPNGIPVQGAPKSSS 91
+A+ VTGP+G VQGAP+ ++
Sbjct: 60 GRAKAVEVTGPDGAHVQGAPRRAA 83
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 52/81 (64%), Gaps = 9/81 (11%)
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD- 170
G VK++++++GFGFIT D E+IFVH+S+I F+SL E V++ V K D
Sbjct: 6 GKVKWFNTQKGFGFITPDDGSEEIFVHQSAIHAEG----FRSLREEEPVEYT--VEKSDD 59
Query: 171 --IEAINVTGPNGIPVQGAPK 189
+A+ VTGP+G VQGAP+
Sbjct: 60 GRAKAVEVTGPDGAHVQGAPR 80
>gi|67602636|ref|XP_666494.1| glycogen debranching enzyme [Cryptosporidium hominis TU502]
gi|54657499|gb|EAL36263.1| glycogen debranching enzyme [Cryptosporidium hominis]
Length = 127
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 49/77 (63%), Gaps = 5/77 (6%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+ G+ K++DS +GFGFIT D EDIFVH+ +I + F+SL E V++ I K
Sbjct: 3 LSGVCKWFDSTKGFGFITPDDGSEDIFVHQQNI----KVEGFRSLAQDERVEYEIETDDK 58
Query: 69 -DIEAINVTGPNGIPVQ 84
+A+NV+GPNG PV+
Sbjct: 59 GRRKAVNVSGPNGAPVK 75
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 49/77 (63%), Gaps = 5/77 (6%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+ G+ K++DS +GFGFIT D EDIFVH+ +I + F+SL E V++ I K
Sbjct: 3 LSGVCKWFDSTKGFGFITPDDGSEDIFVHQQNI----KVEGFRSLAQDERVEYEIETDDK 58
Query: 170 -DIEAINVTGPNGIPVQ 185
+A+NV+GPNG PV+
Sbjct: 59 GRRKAVNVSGPNGAPVK 75
>gi|66359918|ref|XP_627137.1| cold shock RNA binding domain of the OB fold [Cryptosporidium
parvum Iowa II]
gi|46228824|gb|EAK89694.1| cold shock RNA binding domain of the OB fold [Cryptosporidium
parvum Iowa II]
Length = 135
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 48/77 (62%), Gaps = 5/77 (6%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+ G+ K++DS +GFGFIT D EDIFVH+ +I F+SL E V++ I K
Sbjct: 11 LSGVCKWFDSTKGFGFITPDDGSEDIFVHQQNIKVEG----FRSLAQDERVEYEIETDDK 66
Query: 69 -DIEAINVTGPNGIPVQ 84
+A+NV+GPNG PV+
Sbjct: 67 GRRKAVNVSGPNGAPVK 83
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 48/77 (62%), Gaps = 5/77 (6%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+ G+ K++DS +GFGFIT D EDIFVH+ +I F+SL E V++ I K
Sbjct: 11 LSGVCKWFDSTKGFGFITPDDGSEDIFVHQQNIKVEG----FRSLAQDERVEYEIETDDK 66
Query: 170 -DIEAINVTGPNGIPVQ 185
+A+NV+GPNG PV+
Sbjct: 67 GRRKAVNVSGPNGAPVK 83
>gi|443734748|gb|ELU18614.1| hypothetical protein CAPTEDRAFT_69814, partial [Capitella teleta]
Length = 60
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 39/53 (73%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDF 61
V G VK+ + +RG+GFI R D +ED+FVH ++IVK NP K+ +S+G GE +F
Sbjct: 8 VTGEVKWSNVRRGYGFINRDDTQEDVFVHHTAIVKNNPHKYLRSVGDGEKAEF 60
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 39/53 (73%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDF 162
V G VK+ + +RG+GFI R D +ED+FVH ++IVK NP K+ +S+G GE +F
Sbjct: 8 VTGEVKWSNVRRGYGFINRDDTQEDVFVHHTAIVKNNPHKYLRSVGDGEKAEF 60
>gi|357145183|ref|XP_003573554.1| PREDICTED: glycine-rich protein 2b-like isoform 1 [Brachypodium
distachyon]
gi|357145187|ref|XP_003573555.1| PREDICTED: glycine-rich protein 2b-like isoform 2 [Brachypodium
distachyon]
gi|357145190|ref|XP_003573556.1| PREDICTED: glycine-rich protein 2b-like isoform 3 [Brachypodium
distachyon]
Length = 257
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 50/77 (64%), Gaps = 5/77 (6%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
++G VK+++ +GFGFI+ D ED+FVH+SSI F+SL GE+V+F I G
Sbjct: 7 LKGTVKWFNDTKGFGFISPDDGGEDLFVHQSSI----KADGFRSLAEGEVVEFAISEGDD 62
Query: 69 D-IEAINVTGPNGIPVQ 84
+A++VTGP+G VQ
Sbjct: 63 GRTKAVDVTGPDGSFVQ 79
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 50/77 (64%), Gaps = 5/77 (6%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
++G VK+++ +GFGFI+ D ED+FVH+SSI F+SL GE+V+F I G
Sbjct: 7 LKGTVKWFNDTKGFGFISPDDGGEDLFVHQSSI----KADGFRSLAEGEVVEFAISEGDD 62
Query: 170 D-IEAINVTGPNGIPVQ 185
+A++VTGP+G VQ
Sbjct: 63 GRTKAVDVTGPDGSFVQ 79
>gi|162985|gb|AAA21677.1| transcription factor EF1(A) [Bos taurus]
Length = 110
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 38/49 (77%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGE 57
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE
Sbjct: 59 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGE 107
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 38/49 (77%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGE 158
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE
Sbjct: 59 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGE 107
>gi|91083993|ref|XP_975245.1| PREDICTED: similar to AGAP006591-PA [Tribolium castaneum]
Length = 195
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 50/81 (61%), Gaps = 4/81 (4%)
Query: 111 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 170
RG K+++ +G+GFIT D +D+FVH+ S+++M+ F+SLG E V+F V K
Sbjct: 41 RGKCKWFNVAKGWGFITPDDGGQDVFVHQ-SVIQMS---GFRSLGDDEEVEFECQVSDKG 96
Query: 171 IEAINVTGPNGIPVQGAPKVP 191
+EA V+GP +G+ + P
Sbjct: 97 LEATKVSGPQNTDCRGSHRRP 117
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 48/77 (62%), Gaps = 4/77 (5%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 69
RG K+++ +G+GFIT D +D+FVH+ S+++M+ F+SLG E V+F V K
Sbjct: 41 RGKCKWFNVAKGWGFITPDDGGQDVFVHQ-SVIQMS---GFRSLGDDEEVEFECQVSDKG 96
Query: 70 IEAINVTGPNGIPVQGA 86
+EA V+GP +G+
Sbjct: 97 LEATKVSGPQNTDCRGS 113
>gi|261752569|ref|ZP_05996278.1| cold-shock DNA-binding domain-containing protein [Brucella suis bv.
5 str. 513]
gi|261742322|gb|EEY30248.1| cold-shock DNA-binding domain-containing protein [Brucella suis bv.
5 str. 513]
Length = 193
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 85/185 (45%), Gaps = 22/185 (11%)
Query: 5 EIHTVRGIVKFYDSKRGFGFIT-RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
E+ V G +K++D +G+GFI DI +H +S+ + FQ+ G + +
Sbjct: 22 ELIEVSGHIKWFDVAKGYGFIVPDQPGLTDILLHVTSLRRDG----FQTALEGARIVCEV 77
Query: 64 GVGKKDIEAINVTGPNGI----PVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDS 119
G + ++ V + P Q P+ + TV+ P+ R IVK+++
Sbjct: 78 RHGDRGLQCFRVLSMDASTAIHPAQMPPQRTHVTVT---------PSSGLERVIVKWFNR 128
Query: 120 KRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGP 179
+GFGF+TR + EDIF+H ++ + L G++V G G+K + A +
Sbjct: 129 TKGFGFLTRGEGTEDIFIHMETLRRFG----MMELRPGQVVLIRFGTGEKGLMAAEIHPD 184
Query: 180 NGIPV 184
GI +
Sbjct: 185 IGIAI 189
>gi|74272681|gb|ABA01136.1| putative nucleic acid-binding protein, partial [Chlamydomonas
incerta]
Length = 226
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 52/81 (64%), Gaps = 5/81 (6%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 69
+G VK++++ +GFGFIT ED+FVH+++I + F+SL GE V+F + G
Sbjct: 8 QGTVKWFNATKGFGFITPGGGGEDLFVHQTNIN----SEGFRSLREGEAVEFEVEAGPDG 63
Query: 70 -IEAINVTGPNGIPVQGAPKS 89
+A+NVTGP G +GAP++
Sbjct: 64 RSKAVNVTGPAGAAPEGAPRN 84
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 51/80 (63%), Gaps = 5/80 (6%)
Query: 111 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 170
+G VK++++ +GFGFIT ED+FVH+++I + F+SL GE V+F + G
Sbjct: 8 QGTVKWFNATKGFGFITPGGGGEDLFVHQTNIN----SEGFRSLREGEAVEFEVEAGPDG 63
Query: 171 -IEAINVTGPNGIPVQGAPK 189
+A+NVTGP G +GAP+
Sbjct: 64 RSKAVNVTGPAGAAPEGAPR 83
>gi|270007992|gb|EFA04440.1| hypothetical protein TcasGA2_TC014742 [Tribolium castaneum]
Length = 192
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 50/81 (61%), Gaps = 4/81 (4%)
Query: 111 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 170
RG K+++ +G+GFIT D +D+FVH+ S+++M+ F+SLG E V+F V K
Sbjct: 38 RGKCKWFNVAKGWGFITPDDGGQDVFVHQ-SVIQMS---GFRSLGDDEEVEFECQVSDKG 93
Query: 171 IEAINVTGPNGIPVQGAPKVP 191
+EA V+GP +G+ + P
Sbjct: 94 LEATKVSGPQNTDCRGSHRRP 114
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 48/77 (62%), Gaps = 4/77 (5%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 69
RG K+++ +G+GFIT D +D+FVH+ S+++M+ F+SLG E V+F V K
Sbjct: 38 RGKCKWFNVAKGWGFITPDDGGQDVFVHQ-SVIQMS---GFRSLGDDEEVEFECQVSDKG 93
Query: 70 IEAINVTGPNGIPVQGA 86
+EA V+GP +G+
Sbjct: 94 LEATKVSGPQNTDCRGS 110
>gi|261214256|ref|ZP_05928537.1| cold-shock DNA-binding domain-containing protein [Brucella abortus
bv. 3 str. Tulya]
gi|260915863|gb|EEX82724.1| cold-shock DNA-binding domain-containing protein [Brucella abortus
bv. 3 str. Tulya]
Length = 193
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 82/177 (46%), Gaps = 22/177 (12%)
Query: 5 EIHTVRGIVKFYDSKRGFGFIT-RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
E+ V G +K++D +G+GFI DI +H +S+ + FQ+ G + +
Sbjct: 22 ELIEVSGHIKWFDVAKGYGFIVPDQPGLTDILLHVTSLRRDG----FQTALEGARIVCEV 77
Query: 64 GVGKKDIEAINVTGPNGI----PVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDS 119
G + ++ V + P Q P+ + TV+ P+ R IVK+++
Sbjct: 78 RHGDRGLQCFRVLSMDASTAIHPAQMPPQCTHVTVT---------PSSGLERVIVKWFNR 128
Query: 120 KRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINV 176
+GFGF+TR + EDIF+H ++ + L G++V G G+K + A +
Sbjct: 129 TKGFGFLTRGEGTEDIFIHMETLRRFG----MMELRPGQVVLIRFGTGEKGLMAAEI 181
>gi|209735380|gb|ACI68559.1| Nuclease-sensitive element-binding protein 1 [Salmo salar]
gi|209738580|gb|ACI70159.1| Nuclease-sensitive element-binding protein 1 [Salmo salar]
Length = 111
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 37/48 (77%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLG 56
V G VK+++ + G+GFI R D KED+FVH+++I K NPKK+ +S+G G
Sbjct: 39 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPKKYLRSVGDG 86
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 37/48 (77%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLG 157
V G VK+++ + G+GFI R D KED+FVH+++I K NPKK+ +S+G G
Sbjct: 39 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPKKYLRSVGDG 86
>gi|330994825|ref|ZP_08318747.1| Cold shock-like protein CspE [Gluconacetobacter sp. SXCC-1]
gi|329758086|gb|EGG74608.1| Cold shock-like protein CspE [Gluconacetobacter sp. SXCC-1]
Length = 229
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 81/179 (45%), Gaps = 18/179 (10%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+ VK+++S++GFGF+ D D+F+H ++ +NP ++ G + IG G K
Sbjct: 57 ISATVKWFNSEKGFGFVELSDGSGDVFLHANA---LNPTGH-ATVAPGTTLVVQIGQGPK 112
Query: 69 ----------DIEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYD 118
D P G GA + S + R +RG VK+Y+
Sbjct: 113 GRQVAAVLSVDESTAQPERPRGPAGFGAAGGARGGFSRSGRPAPDLSHAQDMRGTVKWYN 172
Query: 119 SKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVT 177
+ +GFGFIT + +DIFVH S++ + L G+ + + G+K EA ++
Sbjct: 173 AAKGFGFITPENGGKDIFVHASALERSG----LSGLTEGQTANVQVVEGQKGPEAAALS 227
>gi|58038548|ref|YP_190512.1| transcriptional regulator cold shock protein [Gluconobacter oxydans
621H]
gi|58000962|gb|AAW59856.1| Putative transcriptional regulator cold shock protein
[Gluconobacter oxydans 621H]
Length = 228
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 83/172 (48%), Gaps = 16/172 (9%)
Query: 13 VKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEA 72
VK++++++GFGF+ D DIF+H +++ ++ G V IG G K +
Sbjct: 64 VKWFNTEKGFGFVELSDGSGDIFLHANALTNAG----VSNVNPGATVVVRIGQGPKGRQV 119
Query: 73 INVTGPNGIPVQGAPKSSS----ETVSGTYRNDSFFPAV---HTVRGIVKFYDSKRGFGF 125
V + + AP+ + + G R P + +RG VK+Y++ +GFGF
Sbjct: 120 AEVLSVDESTAE-APRPRAAFGDQPRFGGARPGRPAPDLSRAEDMRGTVKWYNATKGFGF 178
Query: 126 ITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVT 177
IT +DIFVH S++ + +L G+ ++ + G+K EA ++
Sbjct: 179 ITPESGGKDIFVHASALERSG----LPTLDEGQTINVKVVQGQKGPEAAEIS 226
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+RG VK+Y++ +GFGFIT +DIFVH S++ + +L G+ ++ + G+K
Sbjct: 163 MRGTVKWYNATKGFGFITPESGGKDIFVHASALERSG----LPTLDEGQTINVKVVQGQK 218
Query: 69 DIEAINVT 76
EA ++
Sbjct: 219 GPEAAEIS 226
>gi|357122574|ref|XP_003562990.1| PREDICTED: glycine-rich protein 2b-like [Brachypodium distachyon]
Length = 193
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 49/76 (64%), Gaps = 5/76 (6%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V+G VK+++ ++GFGFIT D ED+FVH+SSI F+SL G V+F +G G
Sbjct: 5 VKGTVKWFNVEKGFGFITPEDGGEDLFVHQSSI----KSDGFRSLDEGATVEFVVGSGDD 60
Query: 69 D-IEAINVTGPNGIPV 83
+AI+VTGP G+ +
Sbjct: 61 GRTKAIDVTGPGGVTL 76
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 49/76 (64%), Gaps = 5/76 (6%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V+G VK+++ ++GFGFIT D ED+FVH+SSI F+SL G V+F +G G
Sbjct: 5 VKGTVKWFNVEKGFGFITPEDGGEDLFVHQSSI----KSDGFRSLDEGATVEFVVGSGDD 60
Query: 170 D-IEAINVTGPNGIPV 184
+AI+VTGP G+ +
Sbjct: 61 GRTKAIDVTGPGGVTL 76
>gi|62290174|ref|YP_221967.1| cold-shock family protein [Brucella abortus bv. 1 str. 9-941]
gi|82700096|ref|YP_414670.1| cold shock DNA-binding domain-containing protein [Brucella
melitensis biovar Abortus 2308]
gi|189024409|ref|YP_001935177.1| Cold-shock DNA-binding domain protein [Brucella abortus S19]
gi|237815683|ref|ZP_04594680.1| Cold shock-like protein cspG [Brucella abortus str. 2308 A]
gi|260546718|ref|ZP_05822457.1| cold-shock DNA-binding domain-containing protein [Brucella abortus
NCTC 8038]
gi|260755001|ref|ZP_05867349.1| cold-shock DNA-binding domain-containing protein [Brucella abortus
bv. 6 str. 870]
gi|260758217|ref|ZP_05870565.1| cold-shock DNA-binding domain-containing protein [Brucella abortus
bv. 4 str. 292]
gi|260762044|ref|ZP_05874387.1| cold-shock DNA-binding domain-containing protein [Brucella abortus
bv. 2 str. 86/8/59]
gi|260884011|ref|ZP_05895625.1| cold-shock DNA-binding domain-containing protein [Brucella abortus
bv. 9 str. C68]
gi|297248567|ref|ZP_06932285.1| cold shock protein (beta-ribbon, CspA family) [Brucella abortus bv.
5 str. B3196]
gi|376273006|ref|YP_005151584.1| CspA family cold shock protein [Brucella abortus A13334]
gi|423166644|ref|ZP_17153347.1| hypothetical protein M17_00334 [Brucella abortus bv. 1 str. NI435a]
gi|423170982|ref|ZP_17157657.1| hypothetical protein M19_01515 [Brucella abortus bv. 1 str. NI474]
gi|423172936|ref|ZP_17159607.1| hypothetical protein M1A_00334 [Brucella abortus bv. 1 str. NI486]
gi|423178371|ref|ZP_17165015.1| hypothetical protein M1E_02611 [Brucella abortus bv. 1 str. NI488]
gi|423180412|ref|ZP_17167053.1| hypothetical protein M1G_01512 [Brucella abortus bv. 1 str. NI010]
gi|423183544|ref|ZP_17170181.1| hypothetical protein M1I_01513 [Brucella abortus bv. 1 str. NI016]
gi|423185516|ref|ZP_17172130.1| hypothetical protein M1K_00334 [Brucella abortus bv. 1 str. NI021]
gi|423188651|ref|ZP_17175261.1| hypothetical protein M1M_00333 [Brucella abortus bv. 1 str. NI259]
gi|62196306|gb|AAX74606.1| cold-shock family protein [Brucella abortus bv. 1 str. 9-941]
gi|82616197|emb|CAJ11240.1| Cold-shock DNA-binding domain [Brucella melitensis biovar Abortus
2308]
gi|189019981|gb|ACD72703.1| Cold-shock DNA-binding domain protein [Brucella abortus S19]
gi|237788981|gb|EEP63192.1| Cold shock-like protein cspG [Brucella abortus str. 2308 A]
gi|260095768|gb|EEW79645.1| cold-shock DNA-binding domain-containing protein [Brucella abortus
NCTC 8038]
gi|260668535|gb|EEX55475.1| cold-shock DNA-binding domain-containing protein [Brucella abortus
bv. 4 str. 292]
gi|260672476|gb|EEX59297.1| cold-shock DNA-binding domain-containing protein [Brucella abortus
bv. 2 str. 86/8/59]
gi|260675109|gb|EEX61930.1| cold-shock DNA-binding domain-containing protein [Brucella abortus
bv. 6 str. 870]
gi|260873539|gb|EEX80608.1| cold-shock DNA-binding domain-containing protein [Brucella abortus
bv. 9 str. C68]
gi|297175736|gb|EFH35083.1| cold shock protein (beta-ribbon, CspA family) [Brucella abortus bv.
5 str. B3196]
gi|363400612|gb|AEW17582.1| cold shock protein (beta-ribbon, CspA family) [Brucella abortus
A13334]
gi|374538316|gb|EHR09824.1| hypothetical protein M19_01515 [Brucella abortus bv. 1 str. NI474]
gi|374544128|gb|EHR15606.1| hypothetical protein M17_00334 [Brucella abortus bv. 1 str. NI435a]
gi|374544455|gb|EHR15932.1| hypothetical protein M1A_00334 [Brucella abortus bv. 1 str. NI486]
gi|374545152|gb|EHR16615.1| hypothetical protein M1E_02611 [Brucella abortus bv. 1 str. NI488]
gi|374547943|gb|EHR19395.1| hypothetical protein M1G_01512 [Brucella abortus bv. 1 str. NI010]
gi|374548372|gb|EHR19820.1| hypothetical protein M1I_01513 [Brucella abortus bv. 1 str. NI016]
gi|374559213|gb|EHR30602.1| hypothetical protein M1M_00333 [Brucella abortus bv. 1 str. NI259]
gi|374560226|gb|EHR31609.1| hypothetical protein M1K_00334 [Brucella abortus bv. 1 str. NI021]
Length = 193
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 82/177 (46%), Gaps = 22/177 (12%)
Query: 5 EIHTVRGIVKFYDSKRGFGFIT-RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
E+ V G +K++D +G+GFI DI +H +S+ + FQ+ G + +
Sbjct: 22 ELIEVSGHIKWFDVAKGYGFIVPDQPGLTDILLHVTSL----RRDGFQTALEGARIVCEV 77
Query: 64 GVGKKDIEAINVTGPNGI----PVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDS 119
G + ++ V + P Q P+ + TV+ P+ R IVK+++
Sbjct: 78 RHGDRGLQCFRVLSMDASTAIHPAQMPPQCTHVTVT---------PSSGLERVIVKWFNR 128
Query: 120 KRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINV 176
+GFGF+TR + EDIF+H ++ + L G++V G G+K + A +
Sbjct: 129 TKGFGFLTRGEGTEDIFIHMETLRRFG----MMELRPGQVVLIRFGTGEKGLMAAEI 181
>gi|226507970|ref|NP_001140374.1| uncharacterized protein LOC100272427 [Zea mays]
gi|194699220|gb|ACF83694.1| unknown [Zea mays]
Length = 395
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 49/79 (62%), Gaps = 5/79 (6%)
Query: 104 FPAVHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFN 163
A RG VK+++ +GFGFI+ D ED+FVH+SSI + F+SL GE V+F+
Sbjct: 1 MAAAARQRGTVKWFNDTKGFGFISPEDGSEDLFVHQSSI----KSEGFRSLAEGEEVEFS 56
Query: 164 IGVGKKD-IEAINVTGPNG 181
+ G +A++VTGP+G
Sbjct: 57 VSEGDDGRTKAVDVTGPDG 75
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 48/72 (66%), Gaps = 5/72 (6%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 69
RG VK+++ +GFGFI+ D ED+FVH+SSI + F+SL GE V+F++ G
Sbjct: 8 RGTVKWFNDTKGFGFISPEDGSEDLFVHQSSI----KSEGFRSLAEGEEVEFSVSEGDDG 63
Query: 70 -IEAINVTGPNG 80
+A++VTGP+G
Sbjct: 64 RTKAVDVTGPDG 75
>gi|121601754|ref|YP_989122.1| cold-shock DNA-binding family protein [Bartonella bacilliformis
KC583]
gi|421760931|ref|ZP_16197739.1| cold shock protein [Bartonella bacilliformis INS]
gi|120613931|gb|ABM44532.1| cold-shock DNA-binding family protein [Bartonella bacilliformis
KC583]
gi|411173817|gb|EKS43857.1| cold shock protein [Bartonella bacilliformis INS]
Length = 179
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 86/188 (45%), Gaps = 31/188 (16%)
Query: 5 EIHTVRGIVKFYDSKRGFGFIT-RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
EI + GI+K++DS +G+GF+T DI +H + + + FQ+ G V ++
Sbjct: 10 EIVEITGIIKWFDSSKGYGFVTPDFPKLPDILLH----ISVMQRDGFQTALEGAKVVCSV 65
Query: 64 GVGKKDIEAINVTG--------PNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVK 115
K+ ++ I V P+ IPV+ + TVS P R IVK
Sbjct: 66 KKTKRGLKCIQVKSIDLSSAVHPSEIPVR-----THITVS---------PESGLERAIVK 111
Query: 116 FYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAIN 175
+++ +GFGF++R EDIF+H ++ + L G++V G G+K +
Sbjct: 112 WFNRDKGFGFLSRGQGTEDIFIHMETLRRFG----LTELRAGQVVIVRFGKGEKGLMTAE 167
Query: 176 VTGPNGIP 183
+ +P
Sbjct: 168 IYPDIALP 175
>gi|403175687|ref|XP_003334453.2| hypothetical protein PGTG_15882 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375171712|gb|EFP90034.2| hypothetical protein PGTG_15882 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 344
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 10/89 (11%)
Query: 3 KFEIHTVR-GIVKFYDSKRGFGFIT-----RLDNKEDIFVHKSSIVKMNPKKFFQSLGLG 56
+F+I R G+ KF++S++GFGFI L N+E +FVH +SI K F+SL G
Sbjct: 40 QFDISRRRKGVCKFFNSQKGFGFINDDHPEELGNQE-VFVHYTSIES---KGNFRSLAEG 95
Query: 57 EIVDFNIGVGKKDIEAINVTGPNGIPVQG 85
E V++ + G+K +A VTGP G VQG
Sbjct: 96 EEVEYVVAPGQKGFQATEVTGPAGRAVQG 124
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 50/81 (61%), Gaps = 9/81 (11%)
Query: 111 RGIVKFYDSKRGFGFIT-----RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIG 165
+G+ KF++S++GFGFI L N+E +FVH +SI K F+SL GE V++ +
Sbjct: 48 KGVCKFFNSQKGFGFINDDHPEELGNQE-VFVHYTSIES---KGNFRSLAEGEEVEYVVA 103
Query: 166 VGKKDIEAINVTGPNGIPVQG 186
G+K +A VTGP G VQG
Sbjct: 104 PGQKGFQATEVTGPAGRAVQG 124
>gi|23502142|ref|NP_698269.1| cold-shock family protein [Brucella suis 1330]
gi|161619217|ref|YP_001593104.1| cold shock-like protein cspG [Brucella canis ATCC 23365]
gi|163843529|ref|YP_001627933.1| cold shock-like protein cspG [Brucella suis ATCC 23445]
gi|260566213|ref|ZP_05836683.1| cold-shock DNA-binding domain-containing protein [Brucella suis bv.
4 str. 40]
gi|261755227|ref|ZP_05998936.1| cold-shock DNA-binding domain-containing protein [Brucella suis bv.
3 str. 686]
gi|376276124|ref|YP_005116563.1| cold-shock DNA-binding domain-containing protein [Brucella canis
HSK A52141]
gi|376280936|ref|YP_005154942.1| cold-shock family protein [Brucella suis VBI22]
gi|384224930|ref|YP_005616094.1| cold-shock family protein [Brucella suis 1330]
gi|23348105|gb|AAN30184.1| cold-shock family protein [Brucella suis 1330]
gi|161336028|gb|ABX62333.1| Cold shock-like protein cspG [Brucella canis ATCC 23365]
gi|163674252|gb|ABY38363.1| Cold shock-like protein cspG [Brucella suis ATCC 23445]
gi|260155731|gb|EEW90811.1| cold-shock DNA-binding domain-containing protein [Brucella suis bv.
4 str. 40]
gi|261744980|gb|EEY32906.1| cold-shock DNA-binding domain-containing protein [Brucella suis bv.
3 str. 686]
gi|343383110|gb|AEM18602.1| cold-shock family protein [Brucella suis 1330]
gi|358258535|gb|AEU06270.1| cold-shock family protein [Brucella suis VBI22]
gi|363404691|gb|AEW14986.1| cold-shock DNA-binding domain-containing protein [Brucella canis
HSK A52141]
Length = 193
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 82/177 (46%), Gaps = 22/177 (12%)
Query: 5 EIHTVRGIVKFYDSKRGFGFIT-RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
E+ V G +K++D +G+GFI DI +H +S+ + FQ+ G + +
Sbjct: 22 ELIEVSGHIKWFDVAKGYGFIVPDQPGLTDILLHVTSLRRDE----FQTALEGARIVCEV 77
Query: 64 GVGKKDIEAINVTGPNGI----PVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDS 119
G + ++ V + P Q P+ + TV+ P+ R IVK+++
Sbjct: 78 RHGDRGLQCFRVLSMDASTAIHPAQMPPQRTHVTVT---------PSSGLERVIVKWFNR 128
Query: 120 KRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINV 176
+GFGF+TR + EDIF+H ++ + L G++V G G+K + A +
Sbjct: 129 TKGFGFLTRGEGTEDIFIHMETLRRFG----MMELRPGQVVLIRFGTGEKGLMAAEI 181
>gi|261325345|ref|ZP_05964542.1| cold-shock DNA-binding domain-containing protein [Brucella neotomae
5K33]
gi|261301325|gb|EEY04822.1| cold-shock DNA-binding domain-containing protein [Brucella neotomae
5K33]
Length = 193
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 82/177 (46%), Gaps = 22/177 (12%)
Query: 5 EIHTVRGIVKFYDSKRGFGFIT-RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
E+ V G +K++D +G+GFI DI +H +S+ + FQ+ G V +
Sbjct: 22 ELIEVSGHIKWFDVAKGYGFIVPDQPGLTDILLHVTSLRRDG----FQTALEGARVVCEV 77
Query: 64 GVGKKDIEAINVTGPNGI----PVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDS 119
G + ++ V + P Q P+ + TV+ P+ R IVK+++
Sbjct: 78 RHGDRGLQCFRVLSMDASTAIHPAQMPPQRTHVTVT---------PSSGLERVIVKWFNR 128
Query: 120 KRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINV 176
+GFGF+TR + EDIF+H ++ + L G++V G G+K + A +
Sbjct: 129 TKGFGFLTRGEGTEDIFIHMETLRRFG----MMELRPGQVVLIRFGTGEKGLMAAEI 181
>gi|303283324|ref|XP_003060953.1| cold-shock protein with RNA binding domain [Micromonas pusilla
CCMP1545]
gi|226457304|gb|EEH54603.1| cold-shock protein with RNA binding domain [Micromonas pusilla
CCMP1545]
Length = 316
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 54/84 (64%), Gaps = 6/84 (7%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIG-VGK 67
+ G V +++ +GFGFITR D + DIFVH+S I + F+SL E V+F + +G
Sbjct: 40 MSGTVNWFNVAKGFGFITREDGQGDIFVHQSDIY----SEGFRSLRDEEPVEFTLQEIGD 95
Query: 68 KDIEAINVTGPNGIPVQGA-PKSS 90
+A++VTGPNG VQGA P++S
Sbjct: 96 GRYKAVHVTGPNGAFVQGALPRNS 119
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%), Gaps = 5/79 (6%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIG-VGK 168
+ G V +++ +GFGFITR D + DIFVH+S I + F+SL E V+F + +G
Sbjct: 40 MSGTVNWFNVAKGFGFITREDGQGDIFVHQSDIY----SEGFRSLRDEEPVEFTLQEIGD 95
Query: 169 KDIEAINVTGPNGIPVQGA 187
+A++VTGPNG VQGA
Sbjct: 96 GRYKAVHVTGPNGAFVQGA 114
>gi|308497192|ref|XP_003110783.1| CRE-CEY-4 protein [Caenorhabditis remanei]
gi|308242663|gb|EFO86615.1| CRE-CEY-4 protein [Caenorhabditis remanei]
Length = 289
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 53/80 (66%), Gaps = 2/80 (2%)
Query: 9 VRGIVKFYDSKRGFGFITRL-DNKEDIFVHKSSIVKMNPKKFF-QSLGLGEIVDFNIGVG 66
V GIVK++ + +GF+ R D KED FVH+++I K + K++ ++L E V F+I G
Sbjct: 94 VNGIVKWFSVRGRYGFVARASDEKEDFFVHQTAIAKSSTIKYYLRTLDDEEPVVFDIVEG 153
Query: 67 KKDIEAINVTGPNGIPVQGA 86
+K EA NVTGP+G V+G+
Sbjct: 154 RKGPEAANVTGPDGENVRGS 173
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 53/80 (66%), Gaps = 2/80 (2%)
Query: 110 VRGIVKFYDSKRGFGFITRL-DNKEDIFVHKSSIVKMNPKKFF-QSLGLGEIVDFNIGVG 167
V GIVK++ + +GF+ R D KED FVH+++I K + K++ ++L E V F+I G
Sbjct: 94 VNGIVKWFSVRGRYGFVARASDEKEDFFVHQTAIAKSSTIKYYLRTLDDEEPVVFDIVEG 153
Query: 168 KKDIEAINVTGPNGIPVQGA 187
+K EA NVTGP+G V+G+
Sbjct: 154 RKGPEAANVTGPDGENVRGS 173
>gi|334145421|ref|YP_004538631.1| cold shock protein [Novosphingobium sp. PP1Y]
gi|333937305|emb|CCA90664.1| cold shock protein (beta-ribbon, CspA family) [Novosphingobium sp.
PP1Y]
Length = 223
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 82/179 (45%), Gaps = 38/179 (21%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI--GVGK 67
RG VKF++ +GFGFI D +D FVH S++ ++L G+ ++F + GK
Sbjct: 68 RGTVKFFNPDKGFGFIQLEDGGDDAFVHISAVQSAG----LETLAEGQQLEFQLVERNGK 123
Query: 68 KDIEAINVTGP---------NGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYD 118
+ + G PVQ +S+ E +GT VKF++
Sbjct: 124 VSASELTIVGEVIVAERRERPAAPVQ--RQSTGEKATGT----------------VKFFN 165
Query: 119 SKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK-DIEAINV 176
+GFGFI R D + D FVH S++ + L G+ ++F I + ++ A+N+
Sbjct: 166 GTKGFGFIVRDDGQPDAFVHISAVERSG----LHGLSEGDQLEFEIEIDRRGKASAVNL 220
>gi|17987014|ref|NP_539648.1| cold shock protein [Brucella melitensis bv. 1 str. 16M]
gi|225852761|ref|YP_002732994.1| cold shock-like protein CspG [Brucella melitensis ATCC 23457]
gi|256263754|ref|ZP_05466286.1| cold-shock DNA-binding domain-containing protein [Brucella
melitensis bv. 2 str. 63/9]
gi|260565491|ref|ZP_05835975.1| cold-shock DNA-binding domain-containing protein [Brucella
melitensis bv. 1 str. 16M]
gi|265991335|ref|ZP_06103892.1| cold-shock DNA-binding domain-containing protein [Brucella
melitensis bv. 1 str. Rev.1]
gi|265995172|ref|ZP_06107729.1| cold-shock DNA-binding domain-containing protein [Brucella
melitensis bv. 3 str. Ether]
gi|384211635|ref|YP_005600717.1| cold shock-like protein cspG [Brucella melitensis M5-90]
gi|384408740|ref|YP_005597361.1| cold shock-like protein CspG [Brucella melitensis M28]
gi|384445316|ref|YP_005604035.1| Cold shock-like protein cspG [Brucella melitensis NI]
gi|17982667|gb|AAL51912.1| cold shock protein [Brucella melitensis bv. 1 str. 16M]
gi|225641126|gb|ACO01040.1| Cold shock-like protein cspG [Brucella melitensis ATCC 23457]
gi|260151559|gb|EEW86653.1| cold-shock DNA-binding domain-containing protein [Brucella
melitensis bv. 1 str. 16M]
gi|262766285|gb|EEZ12074.1| cold-shock DNA-binding domain-containing protein [Brucella
melitensis bv. 3 str. Ether]
gi|263002119|gb|EEZ14694.1| cold-shock DNA-binding domain-containing protein [Brucella
melitensis bv. 1 str. Rev.1]
gi|263093812|gb|EEZ17817.1| cold-shock DNA-binding domain-containing protein [Brucella
melitensis bv. 2 str. 63/9]
gi|326409287|gb|ADZ66352.1| cold shock-like protein CspG [Brucella melitensis M28]
gi|326538998|gb|ADZ87213.1| cold shock-like protein cspG [Brucella melitensis M5-90]
gi|349743305|gb|AEQ08848.1| Cold shock-like protein cspG [Brucella melitensis NI]
Length = 193
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 80/173 (46%), Gaps = 22/173 (12%)
Query: 9 VRGIVKFYDSKRGFGFIT-RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGK 67
V G +K++D +G+GFI DI +H +S+ + FQ+ G + + G
Sbjct: 26 VSGHIKWFDVAKGYGFIVPDQPGLTDILLHVTSLRRDG----FQTALEGARIVCEVRHGD 81
Query: 68 KDIEAINVTGPNGI----PVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGF 123
+ ++ V + P Q P+ + TV+ P+ R IVK+++ +GF
Sbjct: 82 RGLQCFRVLSMDASTAIHPAQMPPQCTHVTVT---------PSSGLERVIVKWFNRTKGF 132
Query: 124 GFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINV 176
GF+TR + EDIF+H ++ + L G++V G G+K + A +
Sbjct: 133 GFLTRGEGTEDIFIHMETLRRFG----MMELRPGQVVLIRFGTGEKGLMAAEI 181
>gi|384254153|gb|EIE27627.1| CSD-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 237
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 49/77 (63%), Gaps = 5/77 (6%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD- 69
G VK+++S +GFGFIT D D+FVH+SSI + F+SL E V+F + +
Sbjct: 15 GTVKWFNSSKGFGFITPEDGGTDLFVHQSSI----DAEGFRSLRENEPVEFFVEESEDGR 70
Query: 70 IEAINVTGPNGIPVQGA 86
+A+NVTGP+G P QGA
Sbjct: 71 TKAVNVTGPDGAPPQGA 87
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 49/77 (63%), Gaps = 5/77 (6%)
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD- 170
G VK+++S +GFGFIT D D+FVH+SSI + F+SL E V+F + +
Sbjct: 15 GTVKWFNSSKGFGFITPEDGGTDLFVHQSSI----DAEGFRSLRENEPVEFFVEESEDGR 70
Query: 171 IEAINVTGPNGIPVQGA 187
+A+NVTGP+G P QGA
Sbjct: 71 TKAVNVTGPDGAPPQGA 87
>gi|62087216|dbj|BAD92055.1| germ cell specific Y-box binding protein variant [Homo sapiens]
Length = 268
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 41/53 (77%)
Query: 34 IFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGA 86
+F ++++I + NP+KF +S+G GE V+F++ G+K EA NVTGP G+PV+G+
Sbjct: 23 LFPNQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEATNVTGPGGVPVKGS 75
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 41/53 (77%)
Query: 135 IFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGA 187
+F ++++I + NP+KF +S+G GE V+F++ G+K EA NVTGP G+PV+G+
Sbjct: 23 LFPNQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEATNVTGPGGVPVKGS 75
>gi|358058755|dbj|GAA95718.1| hypothetical protein E5Q_02375 [Mixia osmundae IAM 14324]
Length = 405
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 56/107 (52%), Gaps = 14/107 (13%)
Query: 11 GIVKFYDSKRGFGFITRLDNKE----DIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVG 66
G+ KF+++++GFGFI +E ++FVH ++I K F+SL GE V++ + G
Sbjct: 88 GVCKFFNTQKGFGFINDSRPEELGGQEVFVHYTAIHG---KGGFKSLAEGEEVEYEVNAG 144
Query: 67 KKDIEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGI 113
+K A NVTGP G PV G K R FPA + GI
Sbjct: 145 QKGFTAANVTGPGGRPVLGDQKP-------KLRPQHIFPAPYGALGI 184
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 7/79 (8%)
Query: 112 GIVKFYDSKRGFGFITRLDNKE----DIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVG 167
G+ KF+++++GFGFI +E ++FVH ++I K F+SL GE V++ + G
Sbjct: 88 GVCKFFNTQKGFGFINDSRPEELGGQEVFVHYTAIHG---KGGFKSLAEGEEVEYEVNAG 144
Query: 168 KKDIEAINVTGPNGIPVQG 186
+K A NVTGP G PV G
Sbjct: 145 QKGFTAANVTGPGGRPVLG 163
>gi|148559681|ref|YP_001259182.1| cold-shock family protein [Brucella ovis ATCC 25840]
gi|225627734|ref|ZP_03785771.1| Cold shock-like protein cspG [Brucella ceti str. Cudo]
gi|256369687|ref|YP_003107197.1| cold-shock family protein [Brucella microti CCM 4915]
gi|261219042|ref|ZP_05933323.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
M13/05/1]
gi|261222420|ref|ZP_05936701.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
B1/94]
gi|261317893|ref|ZP_05957090.1| cold-shock DNA-binding domain-containing protein [Brucella
pinnipedialis B2/94]
gi|261322102|ref|ZP_05961299.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
M644/93/1]
gi|261758450|ref|ZP_06002159.1| cold-shock DNA-binding domain-containing protein [Brucella sp.
F5/99]
gi|265984317|ref|ZP_06097052.1| cold-shock DNA-binding domain-containing protein [Brucella sp.
83/13]
gi|265988922|ref|ZP_06101479.1| cold-shock DNA-binding domain-containing protein [Brucella
pinnipedialis M292/94/1]
gi|265998387|ref|ZP_06110944.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
M490/95/1]
gi|294852602|ref|ZP_06793275.1| cold shock protein [Brucella sp. NVSL 07-0026]
gi|306839091|ref|ZP_07471908.1| cold-shock family protein [Brucella sp. NF 2653]
gi|306840269|ref|ZP_07473043.1| cold-shock family protein [Brucella sp. BO2]
gi|306844169|ref|ZP_07476762.1| cold-shock family protein [Brucella inopinata BO1]
gi|340790883|ref|YP_004756348.1| cold-shock family protein [Brucella pinnipedialis B2/94]
gi|148370938|gb|ABQ60917.1| cold-shock family protein [Brucella ovis ATCC 25840]
gi|225617739|gb|EEH14784.1| Cold shock-like protein cspG [Brucella ceti str. Cudo]
gi|255999849|gb|ACU48248.1| cold-shock family protein [Brucella microti CCM 4915]
gi|260921004|gb|EEX87657.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
B1/94]
gi|260924131|gb|EEX90699.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
M13/05/1]
gi|261294792|gb|EEX98288.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
M644/93/1]
gi|261297116|gb|EEY00613.1| cold-shock DNA-binding domain-containing protein [Brucella
pinnipedialis B2/94]
gi|261738434|gb|EEY26430.1| cold-shock DNA-binding domain-containing protein [Brucella sp.
F5/99]
gi|262552855|gb|EEZ08845.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
M490/95/1]
gi|264661119|gb|EEZ31380.1| cold-shock DNA-binding domain-containing protein [Brucella
pinnipedialis M292/94/1]
gi|264662909|gb|EEZ33170.1| cold-shock DNA-binding domain-containing protein [Brucella sp.
83/13]
gi|294821191|gb|EFG38190.1| cold shock protein [Brucella sp. NVSL 07-0026]
gi|306275444|gb|EFM57181.1| cold-shock family protein [Brucella inopinata BO1]
gi|306289796|gb|EFM60978.1| cold-shock family protein [Brucella sp. BO2]
gi|306405638|gb|EFM61900.1| cold-shock family protein [Brucella sp. NF 2653]
gi|340559342|gb|AEK54580.1| cold-shock family protein [Brucella pinnipedialis B2/94]
Length = 193
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 82/177 (46%), Gaps = 22/177 (12%)
Query: 5 EIHTVRGIVKFYDSKRGFGFIT-RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
E+ V G +K++D +G+GFI DI +H +S+ + FQ+ G + +
Sbjct: 22 ELIEVSGHIKWFDVAKGYGFIVPDQPGLTDILLHVTSLRRDG----FQTALEGARIVCEV 77
Query: 64 GVGKKDIEAINVTGPNGI----PVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDS 119
G + ++ V + P Q P+ + TV+ P+ R IVK+++
Sbjct: 78 RHGDRGLQCFRVLSMDASTAIHPAQMPPQRTHVTVT---------PSSGLERVIVKWFNR 128
Query: 120 KRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINV 176
+GFGF+TR + EDIF+H ++ + L G++V G G+K + A +
Sbjct: 129 TKGFGFLTRGEGTEDIFIHMETLRRFG----MMELRPGQVVLIRFGTGEKGLMAAEI 181
>gi|119383611|ref|YP_914667.1| cold-shock DNA-binding domain-containing protein [Paracoccus
denitrificans PD1222]
gi|119373378|gb|ABL68971.1| cold-shock DNA-binding protein family [Paracoccus denitrificans
PD1222]
Length = 197
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 77/168 (45%), Gaps = 12/168 (7%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+ G+VK++D +GFGF+T D DI +H + + + + I+ G +
Sbjct: 11 IAGVVKWFDGSKGFGFLTDPDGGADILLHANVLRNFGQSSVAEGSHVIAIIQ-KTPRGMQ 69
Query: 69 DIEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFITR 128
+E + +T P P+ + ++ S T + P + VK++D +GFGF
Sbjct: 70 AVEVLEITPPASEPM----PAIADLCSATPEEIAQLP---LLPARVKWFDKAKGFGFANI 122
Query: 129 LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINV 176
+K D+F+H V++ F L +GE + + G++ + A +
Sbjct: 123 FADKADVFLH----VEVLRHSGFADLAVGEAIALRVVDGRRGMMAAQI 166
>gi|114706186|ref|ZP_01439089.1| cold shock protein [Fulvimarina pelagi HTCC2506]
gi|114539032|gb|EAU42153.1| cold shock protein [Fulvimarina pelagi HTCC2506]
Length = 191
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 76/180 (42%), Gaps = 21/180 (11%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G +K++D +GFGFI D D+ +H + + + + G V + ++
Sbjct: 27 VSGHIKWFDVAKGFGFIVPDDESADVLIHVTCLRRDGYATALE----GARVVCEVQRSER 82
Query: 69 DIEAINVTGPNGI----PVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFG 124
+ A V + P Q P + V+ P V VK+++ +G+G
Sbjct: 83 GLSAFRVLSMDSSTSVHPSQMPPARTHNQVT---------PTSDLVTATVKWFNRTKGYG 133
Query: 125 FITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPV 184
F+T +N EDIF+H ++ + L LG+ V G+G+K A V + P
Sbjct: 134 FLTTGENDEDIFIHMETLRRFG----MTELRLGQEVKVRYGIGRKGKMAAEVHPADARPA 189
>gi|219125932|ref|XP_002183223.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217405498|gb|EEC45441.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 91
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 53/84 (63%), Gaps = 9/84 (10%)
Query: 111 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI---GVG 167
+G+VK++D+ +GFGFI D D+FVH+++I + F+SL GE V++ + G
Sbjct: 7 KGVVKWFDTMKGFGFIMPDDGSTDVFVHQTAI----QTEGFRSLADGEAVEYVVEEDSNG 62
Query: 168 KKDIEAINVTGPNGIPVQGAPKVP 191
+K +A+ VTGP G VQGAP P
Sbjct: 63 RK--KAVQVTGPGGEEVQGAPFRP 84
Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 52/81 (64%), Gaps = 9/81 (11%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI---GVG 66
+G+VK++D+ +GFGFI D D+FVH+++I + F+SL GE V++ + G
Sbjct: 7 KGVVKWFDTMKGFGFIMPDDGSTDVFVHQTAI----QTEGFRSLADGEAVEYVVEEDSNG 62
Query: 67 KKDIEAINVTGPNGIPVQGAP 87
+K +A+ VTGP G VQGAP
Sbjct: 63 RK--KAVQVTGPGGEEVQGAP 81
>gi|357518027|ref|XP_003629302.1| Major cold-shock protein [Medicago truncatula]
gi|355523324|gb|AET03778.1| Major cold-shock protein [Medicago truncatula]
Length = 329
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 51/81 (62%), Gaps = 5/81 (6%)
Query: 106 AVHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIG 165
A + G+V+++++ +GFGFI D+ ED+FVH+S I + F+SL G+ V+F I
Sbjct: 2 AEERISGVVQWFNNTKGFGFIKPDDDSEDLFVHQSDI----RSEGFRSLSEGDRVEFTIA 57
Query: 166 VGKK-DIEAINVTGPNGIPVQ 185
G +A++VTGP G P+Q
Sbjct: 58 DGDNGKTKAVDVTGPKGEPLQ 78
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 50/77 (64%), Gaps = 5/77 (6%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+ G+V+++++ +GFGFI D+ ED+FVH+S I + F+SL G+ V+F I G
Sbjct: 6 ISGVVQWFNNTKGFGFIKPDDDSEDLFVHQSDI----RSEGFRSLSEGDRVEFTIADGDN 61
Query: 69 -DIEAINVTGPNGIPVQ 84
+A++VTGP G P+Q
Sbjct: 62 GKTKAVDVTGPKGEPLQ 78
>gi|402827525|ref|ZP_10876575.1| cold-shock DNA-binding domain-containing protein [Sphingomonas sp.
LH128]
gi|402258939|gb|EJU09252.1| cold-shock DNA-binding domain-containing protein [Sphingomonas sp.
LH128]
Length = 225
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 79/168 (47%), Gaps = 16/168 (9%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 69
RG VKF++ +GFGFI +D FVH S++ ++L G+ ++F +
Sbjct: 70 RGTVKFFNPDKGFGFIQLEGGGDDAFVHISAVQSAG----LETLAEGQQLEFQLVERGGK 125
Query: 70 IEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFITRL 129
I A +T + V + S+ V + G VKF++S +GFGFI R
Sbjct: 126 ISASELTIVGEVIVAERRERSAAPVQNQSTGEK-------ATGTVKFFNSMKGFGFIVRD 178
Query: 130 DNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK-DIEAINV 176
D + D FVH S++ + L G+ ++F I + ++ A+N+
Sbjct: 179 DGQPDAFVHISAV----ERSGLHGLSEGDQLEFEIEIDRRGKASAVNL 222
>gi|146277100|ref|YP_001167259.1| cold-shock DNA-binding domain-containing protein [Rhodobacter
sphaeroides ATCC 17025]
gi|145555341|gb|ABP69954.1| cold-shock DNA-binding protein family [Rhodobacter sphaeroides ATCC
17025]
Length = 180
Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 74/171 (43%), Gaps = 12/171 (7%)
Query: 6 IHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGV 65
+ V G VK++D +GFGFI +N DI +H + + G+ V +
Sbjct: 8 LQLVHGRVKWFDPAKGFGFIVTEENGADILLHANVLRNYGQSSVADGAGITVKVQ-STQR 66
Query: 66 GKKDIEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGF 125
G + +E + + P G Q + S T + P G VK++D +GFGF
Sbjct: 67 GVQAVEVVEIEPPAGTTFQ-LSEDSEATTPEEIASRPLEP------GRVKWFDKGKGFGF 119
Query: 126 ITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINV 176
ED+F+H +++M+ F L GE V I G++ A+ V
Sbjct: 120 ANVFGRSEDVFIH-VEVLRMSG---FADLAAGEAVALRIIEGRRGRMAVQV 166
Score = 36.6 bits (83), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 106 AVHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIG 165
A+ V G VK++D +GFGFI +N DI +H + + G+ V +
Sbjct: 7 ALQLVHGRVKWFDPAKGFGFIVTEENGADILLHANVLRNYGQSSVADGAGITVKVQ-STQ 65
Query: 166 VGKKDIEAINVTGPNGIPVQ 185
G + +E + + P G Q
Sbjct: 66 RGVQAVEVVEIEPPAGTTFQ 85
>gi|85717340|ref|ZP_01048292.1| Cold-shock protein, DNA-binding [Nitrobacter sp. Nb-311A]
gi|85695815|gb|EAQ33721.1| Cold-shock protein, DNA-binding [Nitrobacter sp. Nb-311A]
Length = 202
Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 81/186 (43%), Gaps = 26/186 (13%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+ G++K++D+ +G+GFI + D+ +H V + + +Q+ G + + K
Sbjct: 36 ISGVIKWFDASKGYGFIVPDNGWPDVLLH----VTVLRRDGYQTAYEGARLVCDCVQRAK 91
Query: 69 DIEAINVTGPNGI----PVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFG 124
+A +T + P Q P + +V+ P R VK+++ RGFG
Sbjct: 92 GYQAFRITSMDESTAIHPAQMLPPRTHVSVT---------PTSGLERAQVKWFNRLRGFG 142
Query: 125 FITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPV 184
F+TR D DIFVH ++ + L G+ V G G K + A V P
Sbjct: 143 FLTRGDGTPDIFVHMETLRRFG----ITELRPGQFVLVRFGPGSKGMMAAEVQ-----PE 193
Query: 185 QGAPKV 190
GAP V
Sbjct: 194 TGAPSV 199
>gi|49474233|ref|YP_032275.1| cold shock protein [Bartonella quintana str. Toulouse]
gi|403530514|ref|YP_006665043.1| cold shock protein [Bartonella quintana RM-11]
gi|49239737|emb|CAF26119.1| Cold shock protein [Bartonella quintana str. Toulouse]
gi|403232586|gb|AFR26329.1| cold shock protein [Bartonella quintana RM-11]
Length = 191
Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 81/182 (44%), Gaps = 19/182 (10%)
Query: 5 EIHTVRGIVKFYDSKRGFGFIT-RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDF-- 61
EI + G++K++D +G+GFI L N DI +H + M F +L +IV
Sbjct: 22 EIIEISGVIKWFDGSKGYGFIIPDLPNFPDILLH---VTVMRRDGFQTALEGAKIVCAVE 78
Query: 62 NIGVGKKDIEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKR 121
G K ++ ++ + I P + V+ P R IVK+++ +
Sbjct: 79 KTERGLKCVQVKSIDCSSAIHPAEIPARTHVVVT---------PESGLERAIVKWFNRDK 129
Query: 122 GFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNG 181
GFGF++R EDIFVH ++ + L G++V G GKK + + G
Sbjct: 130 GFGFLSRGQGTEDIFVHMETLRRFG----LAELRSGQVVLVRFGKGKKGLMTAEIYPDIG 185
Query: 182 IP 183
IP
Sbjct: 186 IP 187
>gi|302760539|ref|XP_002963692.1| hypothetical protein SELMODRAFT_451445 [Selaginella
moellendorffii]
gi|300168960|gb|EFJ35563.1| hypothetical protein SELMODRAFT_451445 [Selaginella
moellendorffii]
Length = 184
Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 50/79 (63%), Gaps = 5/79 (6%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD- 69
G VK++ RGFGFIT D DIFVH++SI + F+SL GEIV++ + +G+
Sbjct: 17 GKVKWFSPTRGFGFITPDDGSPDIFVHQTSI----HAEGFRSLREGEIVEYVVELGQDGR 72
Query: 70 IEAINVTGPNGIPVQGAPK 88
+ A NVTGP G V+GA +
Sbjct: 73 MRAGNVTGPKGAFVEGAAR 91
Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 50/79 (63%), Gaps = 5/79 (6%)
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD- 170
G VK++ RGFGFIT D DIFVH++SI + F+SL GEIV++ + +G+
Sbjct: 17 GKVKWFSPTRGFGFITPDDGSPDIFVHQTSI----HAEGFRSLREGEIVEYVVELGQDGR 72
Query: 171 IEAINVTGPNGIPVQGAPK 189
+ A NVTGP G V+GA +
Sbjct: 73 MRAGNVTGPKGAFVEGAAR 91
>gi|328860156|gb|EGG09263.1| hypothetical protein MELLADRAFT_104398 [Melampsora larici-populina
98AG31]
Length = 334
Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 52/85 (61%), Gaps = 9/85 (10%)
Query: 10 RGIVKFYDSKRGFGFIT-----RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIG 64
+G+ KF++S++GFGFI L N+E +FVH +SI K F+SL GE V++ +
Sbjct: 31 KGVCKFFNSQKGFGFINDDHPDELGNQE-VFVHYTSIGG---KGGFRSLAEGEEVEYVVS 86
Query: 65 VGKKDIEAINVTGPNGIPVQGAPKS 89
G K +A VTGP+G VQG KS
Sbjct: 87 PGHKGFQATEVTGPSGRAVQGDVKS 111
Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 53/91 (58%), Gaps = 14/91 (15%)
Query: 111 RGIVKFYDSKRGFGFIT-----RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIG 165
+G+ KF++S++GFGFI L N+E +FVH +SI K F+SL GE V++ +
Sbjct: 31 KGVCKFFNSQKGFGFINDDHPDELGNQE-VFVHYTSIGG---KGGFRSLAEGEEVEYVVS 86
Query: 166 VGKKDIEAINVTGPNGIPVQG-----APKVP 191
G K +A VTGP+G VQG PK P
Sbjct: 87 PGHKGFQATEVTGPSGRAVQGDVKSKLPKTP 117
>gi|46202227|ref|ZP_00053533.2| COG1278: Cold shock proteins [Magnetospirillum magnetotacticum
MS-1]
Length = 167
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 19/169 (11%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V VK++++ +GFGF+ D D F+H S++ + + G + ++G G++
Sbjct: 16 VSATVKWFNASKGFGFVAPSDGSPDAFLHISALERAG----LTQVAEGATLVVDLGAGQR 71
Query: 69 DIEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFITR 128
GP + V S+ R + P TV G+VKF+ +++GFGF+
Sbjct: 72 --------GPQVVMVHEV--DSTTATPRAPRREERGP-TETVEGVVKFFSAEKGFGFVAC 120
Query: 129 LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVT 177
+ +D+FVH VK + ++L G+ V +G K +A V
Sbjct: 121 DEGGKDVFVH----VKALERSGIKTLESGQRVRVTTTLGLKGPQADTVA 165
Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 7 HTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVG 66
TV G+VKF+ +++GFGF+ + +D+FVH VK + ++L G+ V +G
Sbjct: 100 ETVEGVVKFFSAEKGFGFVACDEGGKDVFVH----VKALERSGIKTLESGQRVRVTTTLG 155
Query: 67 KKDIEAINVT 76
K +A V
Sbjct: 156 LKGPQADTVA 165
>gi|452962768|gb|EME67874.1| cold shock protein [Magnetospirillum sp. SO-1]
Length = 167
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 19/169 (11%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V VK++++ +GFGF+ D D F+H S++ + + G + ++G G++
Sbjct: 16 VSATVKWFNASKGFGFVAPSDGSPDAFLHISALERAG----LTQVAEGATLVVDLGAGQR 71
Query: 69 DIEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFITR 128
GP + V S+ R + P TV G+VKF+ +++GFGF+
Sbjct: 72 --------GPQVVMVHEV--DSTTATPRAPRREERGP-TETVEGVVKFFSAEKGFGFVAC 120
Query: 129 LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVT 177
+ +D+FVH VK + ++L G+ V +G K +A V
Sbjct: 121 DEGGKDVFVH----VKALERSGIKTLESGQRVRVTTTLGLKGPQADTVA 165
Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 7 HTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVG 66
TV G+VKF+ +++GFGF+ + +D+FVH VK + ++L G+ V +G
Sbjct: 100 ETVEGVVKFFSAEKGFGFVACDEGGKDVFVH----VKALERSGIKTLESGQRVRVTTTLG 155
Query: 67 KKDIEAINVT 76
K +A V
Sbjct: 156 LKGPQADTVA 165
>gi|357122544|ref|XP_003562975.1| PREDICTED: protein lin-28 homolog [Brachypodium distachyon]
Length = 203
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 49/76 (64%), Gaps = 5/76 (6%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V+G VK+++ ++GFGFI+ D ED+FVH+SSI F+SL G V+F +G G
Sbjct: 5 VKGTVKWFNVEKGFGFISPEDGGEDLFVHQSSI----KSDGFRSLDEGATVEFVVGSGDD 60
Query: 69 D-IEAINVTGPNGIPV 83
+AI+VTGP G+ +
Sbjct: 61 GRTKAIDVTGPGGVTL 76
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 49/76 (64%), Gaps = 5/76 (6%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V+G VK+++ ++GFGFI+ D ED+FVH+SSI F+SL G V+F +G G
Sbjct: 5 VKGTVKWFNVEKGFGFISPEDGGEDLFVHQSSI----KSDGFRSLDEGATVEFVVGSGDD 60
Query: 170 D-IEAINVTGPNGIPV 184
+AI+VTGP G+ +
Sbjct: 61 GRTKAIDVTGPGGVTL 76
>gi|405958630|gb|EKC24739.1| Lin-28-like protein [Crassostrea gigas]
Length = 167
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
Query: 111 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 170
RG K+++ +G+GF+T D +D+FVH+S + K F+SL GE V+F K
Sbjct: 13 RGRCKWFNVAKGWGFVTPDDGTQDVFVHQSVVHKSG----FRSLDDGEEVEFECKPSDKG 68
Query: 171 IEAINVTGPNGIPVQGAPKVP 191
+EA V GP+G +G+ + P
Sbjct: 69 VEATFVCGPSGTECRGSSRRP 89
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 4/79 (5%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 69
RG K+++ +G+GF+T D +D+FVH+S + K F+SL GE V+F K
Sbjct: 13 RGRCKWFNVAKGWGFVTPDDGTQDVFVHQSVVHKSG----FRSLDDGEEVEFECKPSDKG 68
Query: 70 IEAINVTGPNGIPVQGAPK 88
+EA V GP+G +G+ +
Sbjct: 69 VEATFVCGPSGTECRGSSR 87
>gi|255073219|ref|XP_002500284.1| cold-shock DNA binding protein [Micromonas sp. RCC299]
gi|226515546|gb|ACO61542.1| cold-shock DNA binding protein [Micromonas sp. RCC299]
Length = 122
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 53/83 (63%), Gaps = 9/83 (10%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK++++++GFGFIT D ++IFVH+++I F+SL E V+F I K
Sbjct: 5 VTGKVKWFNTQKGFGFITPDDGSDEIFVHQTAIHSEG----FRSLREDEPVEFVI--EKS 58
Query: 69 D---IEAINVTGPNGIPVQGAPK 88
D +AI VTGP+G VQGAP+
Sbjct: 59 DDGRTKAIEVTGPDGATVQGAPR 81
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 53/83 (63%), Gaps = 9/83 (10%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK++++++GFGFIT D ++IFVH+++I F+SL E V+F I K
Sbjct: 5 VTGKVKWFNTQKGFGFITPDDGSDEIFVHQTAIHSEG----FRSLREDEPVEFVI--EKS 58
Query: 170 D---IEAINVTGPNGIPVQGAPK 189
D +AI VTGP+G VQGAP+
Sbjct: 59 DDGRTKAIEVTGPDGATVQGAPR 81
>gi|347759770|ref|YP_004867331.1| cold shock transcriptional regulator [Gluconacetobacter xylinus
NBRC 3288]
gi|347578740|dbj|BAK82961.1| transcriptional regulator cold shock protein [Gluconacetobacter
xylinus NBRC 3288]
Length = 230
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 81/180 (45%), Gaps = 19/180 (10%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+ VK+++S++GFGF+ D D+F+H ++ +NP ++ G + IG G K
Sbjct: 57 ISATVKWFNSEKGFGFVELSDGSGDVFLHANA---LNPTGH-ATVAPGTTLVVQIGQGPK 112
Query: 69 DIEAINVTGPNGIPVQ-----------GAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFY 117
+ V + Q A + S + R +RG VK+Y
Sbjct: 113 GRQVAAVLSVDESTAQPERPRAPAGFGAAGGAPRGGFSRSGRPTPDLSHAQDMRGTVKWY 172
Query: 118 DSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVT 177
++ +GFGFIT + +DIFVH S++ + L G+ + + G+K EA ++
Sbjct: 173 NATKGFGFITPENGGKDIFVHASALERSG----LSGLTEGQTANVQVVEGQKGPEAAALS 228
>gi|302786020|ref|XP_002974781.1| hypothetical protein SELMODRAFT_58801 [Selaginella
moellendorffii]
gi|300157676|gb|EFJ24301.1| hypothetical protein SELMODRAFT_58801 [Selaginella
moellendorffii]
Length = 145
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 50/79 (63%), Gaps = 5/79 (6%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK-D 69
G VK++ RGFGFIT D DIFVH++SI + F+SL GEIV++ + +G+
Sbjct: 1 GKVKWFSPTRGFGFITPDDGSPDIFVHQTSI----HAEGFRSLREGEIVEYVVELGQDGR 56
Query: 70 IEAINVTGPNGIPVQGAPK 88
+ A NVTGP G V+GA +
Sbjct: 57 MRAGNVTGPKGAFVEGAAR 75
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 50/79 (63%), Gaps = 5/79 (6%)
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK-D 170
G VK++ RGFGFIT D DIFVH++SI + F+SL GEIV++ + +G+
Sbjct: 1 GKVKWFSPTRGFGFITPDDGSPDIFVHQTSI----HAEGFRSLREGEIVEYVVELGQDGR 56
Query: 171 IEAINVTGPNGIPVQGAPK 189
+ A NVTGP G V+GA +
Sbjct: 57 MRAGNVTGPKGAFVEGAAR 75
>gi|163760322|ref|ZP_02167405.1| putative cold shock protein [Hoeflea phototrophica DFL-43]
gi|162282721|gb|EDQ33009.1| putative cold shock protein [Hoeflea phototrophica DFL-43]
Length = 191
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 80/172 (46%), Gaps = 21/172 (12%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+ G++K++D +GFGFI + ED+ +H + + + +Q++ G + I ++
Sbjct: 25 ITGVIKWFDVAKGFGFIIPDNGMEDVLLHVTCLRRDG----YQTVLEGTRIVCEIQKRER 80
Query: 69 DIEAINVTGPNGI----PVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFG 124
+A + + P Q P + V P+ R IVK+++ +GFG
Sbjct: 81 GYQAFRIISMDASTAVHPSQLPPVRTHVQVQ---------PSSGLERAIVKWFNRTKGFG 131
Query: 125 FITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINV 176
F+TR + EDIF+H ++ + L G++V G G+K + A +
Sbjct: 132 FLTRGEGTEDIFIHMETLRRYG----LAELRPGQVVLVRFGNGEKGLMAAEI 179
>gi|418408539|ref|ZP_12981855.1| cold shock protein [Agrobacterium tumefaciens 5A]
gi|358005453|gb|EHJ97779.1| cold shock protein [Agrobacterium tumefaciens 5A]
Length = 188
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 82/181 (45%), Gaps = 15/181 (8%)
Query: 5 EIHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIG 64
++ + G VK++D +GFGFI + +D+ +H S + + + + + ++
Sbjct: 18 DLTEITGAVKWFDVAKGFGFIVPDNGMQDVLLHVSCLRRDGYQTILEGTRIVALIQRR-D 76
Query: 65 VGKKDIEAINVTGPNGI-PVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGF 123
G + +++ + P Q P + V+ P+ R IVK+++ +GF
Sbjct: 77 RGFQAFRILSMDQSTAVHPSQLPPVRTHVQVT---------PSSGLERAIVKWFNRTKGF 127
Query: 124 GFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIP 183
GF+TR + EDIFVH ++ + L G++V G G K + A + N P
Sbjct: 128 GFLTRGEGTEDIFVHMETLRRFG----LTELRPGQVVLVRFGDGDKGLMAAEIHPDNPAP 183
Query: 184 V 184
+
Sbjct: 184 I 184
>gi|340027536|ref|ZP_08663599.1| cold-shock DNA-binding domain-containing protein [Paracoccus sp.
TRP]
Length = 197
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 76/168 (45%), Gaps = 12/168 (7%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+ G+VK++D +GFGF+T + DI +H + + + + +V G +
Sbjct: 11 IAGVVKWFDGSKGFGFLTDPEGGSDILLHANVLRNFGQSSVAEGAHVVAVVQ-KTPRGMQ 69
Query: 69 DIEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFITR 128
IE + +T P P+ + ++ S T + P + VK++D +GFGF
Sbjct: 70 AIEVLEITPPASEPM----PAIADLCSATPDEIACLP---LLPARVKWFDKAKGFGFANI 122
Query: 129 LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINV 176
K D+F+H +++ F L +GE + + G++ + A +
Sbjct: 123 FAEKADVFLH----IEVLRHSGFSDLAVGEAIALRVVDGRRGMMAAQI 166
>gi|417859778|ref|ZP_12504834.1| cold shock protein [Agrobacterium tumefaciens F2]
gi|338822842|gb|EGP56810.1| cold shock protein [Agrobacterium tumefaciens F2]
Length = 188
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 81/177 (45%), Gaps = 15/177 (8%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+ G+VK++D +GFGFI + +D+ +H S + + + + + ++ G +
Sbjct: 22 ITGVVKWFDVAKGFGFIVPDNGIQDVLLHVSCLRRDGYQTILEGTRIVALIQRR-DRGFQ 80
Query: 69 DIEAINVTGPNGI-PVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFIT 127
+++ + P Q P + V+ P+ R IVK+++ +GFGF+T
Sbjct: 81 AFRILSMDQSTAVHPSQLPPVRTHVQVT---------PSSGLERAIVKWFNRTKGFGFLT 131
Query: 128 RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPV 184
R + EDIFVH ++ + L G++V G G K + A + N P+
Sbjct: 132 RGEGTEDIFVHMETLRRFG----LTELRPGQVVLVRYGDGDKGLMAAEIHPDNPAPI 184
>gi|76577745|gb|ABA54143.1| putative glycine-rich protein [Picea glauca]
Length = 156
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 48/76 (63%), Gaps = 5/76 (6%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI-GVGKKD 69
G VK++DS +G+GFIT D ED+FVH++SI F+SL GE V++ +
Sbjct: 8 GKVKWFDSTKGYGFITPDDGSEDLFVHQTSIHSNG----FRSLAEGEAVEYTVEHENGGR 63
Query: 70 IEAINVTGPNGIPVQG 85
+A++VTGP+G VQG
Sbjct: 64 TKALDVTGPDGAFVQG 79
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 48/76 (63%), Gaps = 5/76 (6%)
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI-GVGKKD 170
G VK++DS +G+GFIT D ED+FVH++SI F+SL GE V++ +
Sbjct: 8 GKVKWFDSTKGYGFITPDDGSEDLFVHQTSIHSNG----FRSLAEGEAVEYTVEHENGGR 63
Query: 171 IEAINVTGPNGIPVQG 186
+A++VTGP+G VQG
Sbjct: 64 TKALDVTGPDGAFVQG 79
>gi|116781927|gb|ABK22299.1| unknown [Picea sitchensis]
gi|148909032|gb|ABR17619.1| unknown [Picea sitchensis]
gi|224285091|gb|ACN40273.1| unknown [Picea sitchensis]
Length = 205
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 48/76 (63%), Gaps = 5/76 (6%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI-GVGKKD 69
G VK++DS +G+GFIT D ED+FVH++SI F+SL GE V++ +
Sbjct: 8 GKVKWFDSTKGYGFITPDDGSEDLFVHQTSIHSNG----FRSLAEGEAVEYTVEHENGGR 63
Query: 70 IEAINVTGPNGIPVQG 85
+A++VTGP+G VQG
Sbjct: 64 TKALDVTGPDGAFVQG 79
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 48/76 (63%), Gaps = 5/76 (6%)
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI-GVGKKD 170
G VK++DS +G+GFIT D ED+FVH++SI F+SL GE V++ +
Sbjct: 8 GKVKWFDSTKGYGFITPDDGSEDLFVHQTSIHSNG----FRSLAEGEAVEYTVEHENGGR 63
Query: 171 IEAINVTGPNGIPVQG 186
+A++VTGP+G VQG
Sbjct: 64 TKALDVTGPDGAFVQG 79
>gi|154253414|ref|YP_001414238.1| cold-shock DNA-binding domain-containing protein [Parvibaculum
lavamentivorans DS-1]
gi|154157364|gb|ABS64581.1| putative cold-shock DNA-binding domain protein [Parvibaculum
lavamentivorans DS-1]
Length = 199
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 81/168 (48%), Gaps = 19/168 (11%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI---GV 65
+ G+VK++D+ +G+GFI + +D+ VH S + + ++L G V
Sbjct: 38 ITGVVKWFDAVKGYGFIIPENGGDDVLVHLSCLKQAG----LEALDEGTTVTCEAVRRPK 93
Query: 66 GKKDIEAINVTGPNGI-PVQGAPKSSSET-VSGTYRNDSFFPAVHTVRGIVKFYDSKRGF 123
G + I ++V I P G+ +++S + V+G F A IVK+++ RG+
Sbjct: 94 GAQAIRVVDVDDTTAIKPTSGSARAASRSPVAGVVPIGDFEVA------IVKWFNRARGY 147
Query: 124 GFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 171
GF+TR + DIF+H ++ + + G+ ++ G G K +
Sbjct: 148 GFVTRGEGTPDIFIHMETLRRYGIRDLLP----GQQINVRFGEGPKGL 191
>gi|325293188|ref|YP_004279052.1| cold shock protein [Agrobacterium sp. H13-3]
gi|325061041|gb|ADY64732.1| cold shock protein [Agrobacterium sp. H13-3]
Length = 192
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 82/181 (45%), Gaps = 15/181 (8%)
Query: 5 EIHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIG 64
++ + G VK++D +GFGFI + +D+ +H S + + + + + ++
Sbjct: 22 DLTEITGAVKWFDVAKGFGFIVPDNGMQDVLLHVSCLRRDGYQTILEGTRIVALIQRR-D 80
Query: 65 VGKKDIEAINVTGPNGI-PVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGF 123
G + +++ + P Q P + V+ P+ R IVK+++ +GF
Sbjct: 81 RGFQAFRILSMDQSTAVHPSQLPPVRTHVQVT---------PSSGLERAIVKWFNRTKGF 131
Query: 124 GFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIP 183
GF+TR + EDIFVH ++ + L G++V G G K + A + N P
Sbjct: 132 GFLTRGEGTEDIFVHMETLRRFG----LTELRPGQVVLVRFGDGDKGLMAAEIHPDNPAP 187
Query: 184 V 184
+
Sbjct: 188 I 188
>gi|83313007|ref|YP_423271.1| cold shock protein [Magnetospirillum magneticum AMB-1]
gi|82947848|dbj|BAE52712.1| Cold shock protein [Magnetospirillum magneticum AMB-1]
Length = 200
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 19/169 (11%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V VK++++ +GFGF+ D D F+H S++ + + G + ++G G++
Sbjct: 49 VSATVKWFNASKGFGFVAPSDGSPDAFLHISALERAG----LTQVAEGATLVVDLGAGQR 104
Query: 69 DIEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFITR 128
GP + V S++ T R + TV G+VKF+ +++GFGF+
Sbjct: 105 --------GPQVVMVHEV-DSTTATPRAPRREERG--PTETVEGVVKFFSAEKGFGFVAC 153
Query: 129 LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVT 177
+D+FVH VK + ++L G+ V +G K +A V
Sbjct: 154 DQGGKDVFVH----VKALERSGIKTLESGQRVRVTTTLGLKGPQADTVA 198
Score = 39.3 bits (90), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 7 HTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVG 66
TV G+VKF+ +++GFGF+ +D+FVH VK + ++L G+ V +G
Sbjct: 133 ETVEGVVKFFSAEKGFGFVACDQGGKDVFVH----VKALERSGIKTLESGQRVRVTTTLG 188
Query: 67 KKDIEAINVT 76
K +A V
Sbjct: 189 LKGPQADTVA 198
>gi|241813115|ref|XP_002414626.1| Y1 protein, putative [Ixodes scapularis]
gi|215508837|gb|EEC18291.1| Y1 protein, putative [Ixodes scapularis]
Length = 209
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 46/79 (58%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G V++++ K G+GFI R D +EDIFVH+++I + +P+K +++ GE V F++ V ++
Sbjct: 25 VLGTVQWFNVKNGYGFINRNDTREDIFVHQTAITRNHPQKLTRTVSEGETVQFDVVVDEE 84
Query: 69 DIEAINVTGPNGIPVQGAP 87
P Q P
Sbjct: 85 RARGRQCDRSRREPGQCLP 103
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 46/79 (58%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G V++++ K G+GFI R D +EDIFVH+++I + +P+K +++ GE V F++ V ++
Sbjct: 25 VLGTVQWFNVKNGYGFINRNDTREDIFVHQTAITRNHPQKLTRTVSEGETVQFDVVVDEE 84
Query: 170 DIEAINVTGPNGIPVQGAP 188
P Q P
Sbjct: 85 RARGRQCDRSRREPGQCLP 103
>gi|428672476|gb|EKX73390.1| cold shock protein, putative [Babesia equi]
Length = 102
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 51/92 (55%), Gaps = 6/92 (6%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 70
G K++D K+G+GFIT LDN ED+FVH+S I F+SL E V+ ++ +
Sbjct: 6 GKCKWFDPKKGYGFIT-LDNGEDVFVHQSEIHANG----FRSLREEERVELDVVLENNKK 60
Query: 71 EAINVTGPNGIPVQGAPKSSS-ETVSGTYRND 101
+AI VTGP G V+GA G YR +
Sbjct: 61 KAIRVTGPRGDYVRGAESDGRFHNYDGGYRQE 92
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 47/76 (61%), Gaps = 5/76 (6%)
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 171
G K++D K+G+GFIT LDN ED+FVH+S I F+SL E V+ ++ +
Sbjct: 6 GKCKWFDPKKGYGFIT-LDNGEDVFVHQSEIHANG----FRSLREEERVELDVVLENNKK 60
Query: 172 EAINVTGPNGIPVQGA 187
+AI VTGP G V+GA
Sbjct: 61 KAIRVTGPRGDYVRGA 76
>gi|355673251|ref|ZP_09058848.1| hypothetical protein HMPREF9469_01885 [Clostridium citroniae
WAL-17108]
gi|354814717|gb|EHE99316.1| hypothetical protein HMPREF9469_01885 [Clostridium citroniae
WAL-17108]
Length = 67
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 44/67 (65%), Gaps = 4/67 (5%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 69
+G VK+++S++GFGFIT +N EDIFVH S I F+SL G+ V F+I G +
Sbjct: 3 KGTVKWFNSQKGFGFITNAENGEDIFVHYSGI----ASNGFKSLEDGQSVTFDITNGNRG 58
Query: 70 IEAINVT 76
++A+NV
Sbjct: 59 LQAVNVC 65
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 44/67 (65%), Gaps = 4/67 (5%)
Query: 111 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 170
+G VK+++S++GFGFIT +N EDIFVH S I F+SL G+ V F+I G +
Sbjct: 3 KGTVKWFNSQKGFGFITNAENGEDIFVHYSGI----ASNGFKSLEDGQSVTFDITNGNRG 58
Query: 171 IEAINVT 177
++A+NV
Sbjct: 59 LQAVNVC 65
>gi|85001185|ref|XP_955311.1| cold shock protein [Theileria annulata strain Ankara]
gi|65303457|emb|CAI75835.1| cold shock protein, putative [Theileria annulata]
Length = 95
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 49/78 (62%), Gaps = 5/78 (6%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+ G+ K++++K+G+GFIT L+N ED+FVH+S I F+SL E V+ + +
Sbjct: 4 LNGVCKWFNNKKGYGFIT-LENGEDVFVHQSEIYA----DGFRSLHENEKVELEVIMDNN 58
Query: 69 DIEAINVTGPNGIPVQGA 86
+AI+VTGPNG V G
Sbjct: 59 RKKAIHVTGPNGTHVTGT 76
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 49/78 (62%), Gaps = 5/78 (6%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+ G+ K++++K+G+GFIT L+N ED+FVH+S I F+SL E V+ + +
Sbjct: 4 LNGVCKWFNNKKGYGFIT-LENGEDVFVHQSEIYA----DGFRSLHENEKVELEVIMDNN 58
Query: 170 DIEAINVTGPNGIPVQGA 187
+AI+VTGPNG V G
Sbjct: 59 RKKAIHVTGPNGTHVTGT 76
>gi|406990835|gb|EKE10447.1| cold shock-like protein CspA [uncultured bacterium]
Length = 185
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 88/174 (50%), Gaps = 13/174 (7%)
Query: 1 MTKFEIHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVD 60
+T+ +I + VK+Y+ ++G+GF+ D DIF+H S + ++ + G+ +
Sbjct: 17 ITEADIERIEAKVKWYNPEKGYGFLIPDDESNDIFMHFSVLDAAGCRRVEE----GDRIV 72
Query: 61 FNIGVGKKDIEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFP-AVHTVRGIVKFYDS 119
+IG G++ + + V +P + P+ ++ + R+ +F P ++ + G VK+++
Sbjct: 73 CDIGPGRRGRQVLRVLEVKFVPRE--PRLAAGYIG--QRSPTFDPESLEEIEGEVKWFNP 128
Query: 120 KRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEA 173
+GFGF+ D DIF+H S + ++SL G V + ++ EA
Sbjct: 129 LKGFGFVYPNDGGRDIFLHASVLRAAG----YESLEPGIRVSLKVSSSERGREA 178
>gi|331240856|ref|XP_003333078.1| hypothetical protein PGTG_14864 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309312068|gb|EFP88659.1| hypothetical protein PGTG_14864 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 367
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 82/191 (42%), Gaps = 37/191 (19%)
Query: 11 GIVKFYDSKRGFGFITRLDNKE----------DIFVHKSSIVKMNPKKFFQSLGLGEIVD 60
G+ KF++ +GFGFI +E DIFVH S IV + ++SL GE+V+
Sbjct: 73 GVCKFFNVGKGFGFIKDSRPEELPVLTGDPGTDIFVHYSCIVSCD--APYKSLLDGEVVE 130
Query: 61 FNIGVGKKDIEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKF---- 116
+ +G K + A+ +TGP G+ V+G S S TV N F + + V F
Sbjct: 131 YYLGRSNKGLAALEITGPGGVNVKGCMNSRSPTVLQPMPN--FSGPIRMISAPVTFGPNH 188
Query: 117 -----------YDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIG 165
+D G+ + + + VH ++ SL +G + N
Sbjct: 189 SPNPSPMASPAFDYNTSLGWSMPMSGAQTLGVHSNTA--------GYSLAVGMPLALNQH 240
Query: 166 VGKKDIEAINV 176
+ ++ E++ V
Sbjct: 241 LRRETTESLGV 251
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 12/86 (13%)
Query: 112 GIVKFYDSKRGFGFITRLDNKE----------DIFVHKSSIVKMNPKKFFQSLGLGEIVD 161
G+ KF++ +GFGFI +E DIFVH S IV + ++SL GE+V+
Sbjct: 73 GVCKFFNVGKGFGFIKDSRPEELPVLTGDPGTDIFVHYSCIVSCD--APYKSLLDGEVVE 130
Query: 162 FNIGVGKKDIEAINVTGPNGIPVQGA 187
+ +G K + A+ +TGP G+ V+G
Sbjct: 131 YYLGRSNKGLAALEITGPGGVNVKGC 156
>gi|410916939|ref|XP_003971944.1| PREDICTED: protein lin-28 homolog B-like [Takifugu rubripes]
Length = 231
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 54/106 (50%), Gaps = 13/106 (12%)
Query: 94 VSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFITRLDNKE--------DIFVHKSSIVKM 145
+ R D P + + G K+++ + GFGFI+ + N E D+FVH+S +V
Sbjct: 16 ATSAEREDQRRPQILSGSGFCKWFNVRMGFGFIS-MTNSEGSPVDPPLDVFVHQSKLVME 74
Query: 146 NPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGAPKVP 191
F+SL GE V+F K +E++ VTGP G P G+ + P
Sbjct: 75 G----FRSLKEGEQVEFTYKKSSKGLESLRVTGPGGGPCAGSDRRP 116
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 13/84 (15%)
Query: 11 GIVKFYDSKRGFGFITRLDNKE--------DIFVHKSSIVKMNPKKFFQSLGLGEIVDFN 62
G K+++ + GFGFI+ + N E D+FVH+S +V F+SL GE V+F
Sbjct: 34 GFCKWFNVRMGFGFIS-MTNSEGSPVDPPLDVFVHQSKLVMEG----FRSLKEGEQVEFT 88
Query: 63 IGVGKKDIEAINVTGPNGIPVQGA 86
K +E++ VTGP G P G+
Sbjct: 89 YKKSSKGLESLRVTGPGGGPCAGS 112
>gi|341878779|gb|EGT34714.1| CBN-CEY-4 protein [Caenorhabditis brenneri]
Length = 288
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 53/82 (64%), Gaps = 4/82 (4%)
Query: 9 VRGIVKFYDSKRGFGFITRL---DNKEDIFVHKSSIVKMNPKKFF-QSLGLGEIVDFNIG 64
V+G VK++ + +GF+ R D KED FVH+++I K + K++ ++L E V F+I
Sbjct: 93 VKGYVKWFSVRGRYGFVAREKASDEKEDFFVHQTAIAKSSTIKYYLRTLDDDEPVVFDIV 152
Query: 65 VGKKDIEAINVTGPNGIPVQGA 86
G+K EA NVTGP+G V+G+
Sbjct: 153 EGRKGPEAANVTGPDGENVRGS 174
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 53/82 (64%), Gaps = 4/82 (4%)
Query: 110 VRGIVKFYDSKRGFGFITRL---DNKEDIFVHKSSIVKMNPKKFF-QSLGLGEIVDFNIG 165
V+G VK++ + +GF+ R D KED FVH+++I K + K++ ++L E V F+I
Sbjct: 93 VKGYVKWFSVRGRYGFVAREKASDEKEDFFVHQTAIAKSSTIKYYLRTLDDDEPVVFDIV 152
Query: 166 VGKKDIEAINVTGPNGIPVQGA 187
G+K EA NVTGP+G V+G+
Sbjct: 153 EGRKGPEAANVTGPDGENVRGS 174
>gi|395791122|ref|ZP_10470580.1| hypothetical protein MEC_00571 [Bartonella alsatica IBS 382]
gi|395408485|gb|EJF75095.1| hypothetical protein MEC_00571 [Bartonella alsatica IBS 382]
Length = 191
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 84/192 (43%), Gaps = 39/192 (20%)
Query: 5 EIHTVRGIVKFYDSKRGFGFIT-RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
EI + G++K++D +G+GFI + N DI +H V + + FQ+ G V +
Sbjct: 22 EIIEISGVIKWFDGSKGYGFIVPDMPNFPDILLH----VTVMRRDGFQTALEGAKVICAV 77
Query: 64 --------GVGKKDIEAINVTGPNGIPVQG----APKSSSETVSGTYRNDSFFPAVHTVR 111
V K I+ + P+ IP + AP+S E R
Sbjct: 78 EKTERGLKCVQVKSIDCSSAIHPSEIPARTHVVVAPESGLE------------------R 119
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 171
IVK+++ +GFGF++R EDIF+H ++ + L G++V G G+K +
Sbjct: 120 AIVKWFNRDKGFGFLSRGQGTEDIFIHMETLRRFG----LAELRSGQVVLVRFGKGEKGL 175
Query: 172 EAINVTGPNGIP 183
+ GIP
Sbjct: 176 MTAEIYPDIGIP 187
>gi|444308278|ref|ZP_21143927.1| cold-shock family protein [Ochrobactrum intermedium M86]
gi|443488416|gb|ELT51169.1| cold-shock family protein [Ochrobactrum intermedium M86]
Length = 193
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 82/177 (46%), Gaps = 22/177 (12%)
Query: 5 EIHTVRGIVKFYDSKRGFGFIT-RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
+I + G +K++D +G+GFI DI +H +S+ + FQ+ G + +
Sbjct: 22 DIIEISGHIKWFDVAKGYGFIVPDQPGLNDILLHVTSL----RRDGFQTALEGARIVCEV 77
Query: 64 GVGKKDIEAINV----TGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDS 119
G++ ++ V T P Q P+ + TV+ P+ R IVK+++
Sbjct: 78 RQGERGLQCFRVLSMDTSTAVHPAQMPPQRTHVTVT---------PSSGLERVIVKWFNR 128
Query: 120 KRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINV 176
+GFGF+TR + EDIF+H ++ + L G++V G G K + A +
Sbjct: 129 TKGFGFLTRGEGTEDIFIHMETLRRFG----MMELRPGQVVLIRFGEGDKGLMAAEI 181
>gi|259419058|ref|ZP_05742975.1| cold-shock DNA-binding protein family [Silicibacter sp. TrichCH4B]
gi|259345280|gb|EEW57134.1| cold-shock DNA-binding protein family [Silicibacter sp. TrichCH4B]
Length = 180
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 79/176 (44%), Gaps = 18/176 (10%)
Query: 6 IHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGV 65
+ VRG+VK++D +G+GFI DN DI +H + + G+ E+V
Sbjct: 8 LQHVRGLVKWFDPAKGYGFIVCPDNGPDILLHVNVLRNFGQSSIADGAGI-EVVTHRTDR 66
Query: 66 GKKDIEAINVTGP--NGIPV-QGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRG 122
G + +E +++T P PV + E +S T PA VK++D +G
Sbjct: 67 GVQAVEIVSITPPEREDTPVLSDLAQLDDEEISNT----PLEPAR------VKWFDKAKG 116
Query: 123 FGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTG 178
FGF ED+F+H V++ + + GE + + GK+ A++V
Sbjct: 117 FGFANVFGRDEDVFLH----VEVLRQSGLSDVQSGEALAMRVIEGKRGRMAVDVLA 168
>gi|239832152|ref|ZP_04680481.1| Cold shock-like protein cspG [Ochrobactrum intermedium LMG 3301]
gi|239824419|gb|EEQ95987.1| Cold shock-like protein cspG [Ochrobactrum intermedium LMG 3301]
Length = 233
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 82/177 (46%), Gaps = 22/177 (12%)
Query: 5 EIHTVRGIVKFYDSKRGFGFIT-RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
+I + G +K++D +G+GFI DI +H +S+ + FQ+ G + +
Sbjct: 62 DIIEISGHIKWFDVAKGYGFIVPDQPGLNDILLHVTSL----RRDGFQTALEGARIVCEV 117
Query: 64 GVGKKDIEAINV----TGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDS 119
G++ ++ V T P Q P+ + TV+ P+ R IVK+++
Sbjct: 118 RQGERGLQCFRVLSMDTSTAVHPAQMPPQRTHVTVT---------PSSGLERVIVKWFNR 168
Query: 120 KRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINV 176
+GFGF+TR + EDIF+H ++ + L G++V G G K + A +
Sbjct: 169 TKGFGFLTRGEGTEDIFIHMETLRRFG----MMELRPGQVVLIRFGEGDKGLMAAEI 221
>gi|348541643|ref|XP_003458296.1| PREDICTED: protein lin-28 homolog B-like [Oreochromis niloticus]
Length = 234
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 53/105 (50%), Gaps = 13/105 (12%)
Query: 95 SGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFITRLDNKE--------DIFVHKSSIVKMN 146
S D P V + G K+++ + GFGFI+ + N E D+FVH+S +V
Sbjct: 17 SAEQEEDRTRPQVLSGSGFCKWFNVRMGFGFIS-MTNSEGSPVDPPLDVFVHQSKLVMEG 75
Query: 147 PKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGAPKVP 191
F+SL GE V+F K +E++ VTGP G P G+ + P
Sbjct: 76 ----FRSLKEGEQVEFTYKKSSKGLESLRVTGPGGGPCAGSERRP 116
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 13/93 (13%)
Query: 2 TKFEIHTVRGIVKFYDSKRGFGFITRLDNKE--------DIFVHKSSIVKMNPKKFFQSL 53
T+ ++ + G K+++ + GFGFI+ + N E D+FVH+S +V F+SL
Sbjct: 25 TRPQVLSGSGFCKWFNVRMGFGFIS-MTNSEGSPVDPPLDVFVHQSKLVMEG----FRSL 79
Query: 54 GLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGA 86
GE V+F K +E++ VTGP G P G+
Sbjct: 80 KEGEQVEFTYKKSSKGLESLRVTGPGGGPCAGS 112
>gi|168031977|ref|XP_001768496.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162680209|gb|EDQ66647.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 178
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 49/78 (62%), Gaps = 5/78 (6%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD- 69
G VK+++S +GFGFIT ED+FVH++SI + F+SL GE+V+F + +
Sbjct: 5 GKVKWFNSSKGFGFITPDKGGEDLFVHQTSI----HAEGFRSLREGEVVEFQVESSEDGR 60
Query: 70 IEAINVTGPNGIPVQGAP 87
+A+ VTGP G VQGA
Sbjct: 61 TKALAVTGPGGAFVQGAS 78
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 49/78 (62%), Gaps = 5/78 (6%)
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD- 170
G VK+++S +GFGFIT ED+FVH++SI + F+SL GE+V+F + +
Sbjct: 5 GKVKWFNSSKGFGFITPDKGGEDLFVHQTSI----HAEGFRSLREGEVVEFQVESSEDGR 60
Query: 171 IEAINVTGPNGIPVQGAP 188
+A+ VTGP G VQGA
Sbjct: 61 TKALAVTGPGGAFVQGAS 78
>gi|86357508|ref|YP_469400.1| cold shock protein [Rhizobium etli CFN 42]
gi|86281610|gb|ABC90673.1| cold shock protein [Rhizobium etli CFN 42]
Length = 192
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 80/169 (47%), Gaps = 15/169 (8%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+ G+VK++D +GFGFI + +D+ +H + + + + + + +V G +
Sbjct: 26 ITGVVKWFDVAKGFGFIVPDNGMQDVLLHVTCLRRDGYQTILEGTRIVALVQRR-ERGYQ 84
Query: 69 DIEAINVTGPNGI-PVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFIT 127
+ +++ I P Q P + V+ T + R +VK+++ +GFGF+T
Sbjct: 85 AFKILSMDQSTAIHPSQLPPVRTHVQVTATSGLE---------RALVKWFNRTKGFGFLT 135
Query: 128 RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINV 176
R + EDIFVH ++ + L G++V G G+K + A +
Sbjct: 136 RGEGTEDIFVHMETLRRFG----LTELRPGQVVLVRFGDGEKGLMAAEI 180
>gi|154248094|ref|YP_001419052.1| cold-shock DNA-binding domain-containing protein [Xanthobacter
autotrophicus Py2]
gi|154162179|gb|ABS69395.1| putative cold-shock DNA-binding domain protein [Xanthobacter
autotrophicus Py2]
Length = 192
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 80/182 (43%), Gaps = 29/182 (15%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G +K++D+ +G+GFI D D+ VH + + + FQ+ G V K
Sbjct: 29 VTGSIKWFDASKGYGFIVPDDGGPDVLVHVTCLRRDG----FQTAMEGARVVCEAVQRAK 84
Query: 69 DIEAINV------TGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRG 122
+A V T + P Q ++ E SG F PA VK+++ RG
Sbjct: 85 GRQAFRVLSLDLSTAVHTAPPQPRTRTVVEPRSG------FEPAT------VKWFNRLRG 132
Query: 123 FGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINV---TGP 179
FGF+T+ D DIFVH ++ + L G+ V G G K + A V TGP
Sbjct: 133 FGFLTQGDGTPDIFVHMETLRRHG----LTELRPGQTVMVRYGDGDKGLMAAEVKADTGP 188
Query: 180 NG 181
+G
Sbjct: 189 SG 190
>gi|395784279|ref|ZP_10464118.1| hypothetical protein ME3_00774 [Bartonella melophagi K-2C]
gi|395424034|gb|EJF90222.1| hypothetical protein ME3_00774 [Bartonella melophagi K-2C]
Length = 191
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 84/192 (43%), Gaps = 39/192 (20%)
Query: 5 EIHTVRGIVKFYDSKRGFGFIT-RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
EI + G++K++DS +G+GFI L DI +H V + + FQ+ G + +
Sbjct: 22 EITEISGVIKWFDSSKGYGFIVPDLCRLPDILLH----VTVMRRDGFQTALEGAKIICAV 77
Query: 64 GVGKKDIEAINVTG--------PNGIPVQG----APKSSSETVSGTYRNDSFFPAVHTVR 111
++ ++ + V P+ IPV+ P+S E R
Sbjct: 78 KKTERGLKCVQVKSIDLSSAVHPSEIPVRTHIVVTPESGLE------------------R 119
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 171
IVK++D +GFGF++R EDIF+H ++ + L G++V G G+K +
Sbjct: 120 AIVKWFDRDKGFGFLSRGQGTEDIFIHMETLRRFG----LAELRSGQVVIVRFGKGEKGL 175
Query: 172 EAINVTGPNGIP 183
+ +P
Sbjct: 176 MTAEIYPDIALP 187
>gi|242247545|ref|NP_001156314.1| RNA-binding protein lin-28-like [Acyrthosiphon pisum]
gi|239792625|dbj|BAH72634.1| ACYPI009849 [Acyrthosiphon pisum]
Length = 250
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 48/80 (60%), Gaps = 4/80 (5%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 69
+GI K+++SK+GFGF+T D +D+FVH+ I K F+SL E V+F K
Sbjct: 72 QGICKWFNSKKGFGFVTPDDGGKDVFVHQRVIK----KDGFRSLRENEHVEFTCHESDKG 127
Query: 70 IEAINVTGPNGIPVQGAPKS 89
+EA VTGP G +G+ K+
Sbjct: 128 LEATLVTGPRGQYCKGSKKA 147
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 4/80 (5%)
Query: 111 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 170
+GI K+++SK+GFGF+T D +D+FVH+ I K F+SL E V+F K
Sbjct: 72 QGICKWFNSKKGFGFVTPDDGGKDVFVHQRVIK----KDGFRSLRENEHVEFTCHESDKG 127
Query: 171 IEAINVTGPNGIPVQGAPKV 190
+EA VTGP G +G+ K
Sbjct: 128 LEATLVTGPRGQYCKGSKKA 147
>gi|159044337|ref|YP_001533131.1| putative cold shock protein [Dinoroseobacter shibae DFL 12]
gi|157912097|gb|ABV93530.1| putative cold shock protein [Dinoroseobacter shibae DFL 12]
Length = 173
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 73/169 (43%), Gaps = 17/169 (10%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQS-LGLGEIVDFNIGVGK 67
V G VK++D K+GFGF+ + DI +H + + + F QS + G + +
Sbjct: 11 VYGTVKWFDPKKGFGFVVGEADGPDILLHANVL-----RNFGQSSVADGSQIQIRVQETP 65
Query: 68 KDIEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFIT 127
+ I+A+ V V P G F V V G VK++D +GFGF+
Sbjct: 66 RGIQAVEV-------VAITPPEMDLDDEGPLGAPQNFDDVPMVPGRVKWFDKVKGFGFLN 118
Query: 128 RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINV 176
EDIFVH + + F L GE V IG ++ A+ V
Sbjct: 119 VFGADEDIFVHMDVLRRCG----FSDLQAGEAVAVRIGESERGRLALEV 163
Score = 39.7 bits (91), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 5 EIHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIG 64
++ V G VK++D +GFGF+ EDIFVH + + F L GE V IG
Sbjct: 97 DVPMVPGRVKWFDKVKGFGFLNVFGADEDIFVHMDVLRRCG----FSDLQAGEAVAVRIG 152
Query: 65 VGKKDIEAINV 75
++ A+ V
Sbjct: 153 ESERGRLALEV 163
>gi|403222865|dbj|BAM40996.1| cold shock protein [Theileria orientalis strain Shintoku]
Length = 110
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 54/100 (54%), Gaps = 14/100 (14%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 70
G K+++SK+G+GFIT LD+ ED+FVH+S I F+SL E V+ + +
Sbjct: 6 GTCKWFNSKKGYGFIT-LDSGEDVFVHQSEIY----ADGFRSLRENEKVELEVVLENDRK 60
Query: 71 EAINVTGPNGIPVQGAP---------KSSSETVSGTYRND 101
+AI+VTGP+G V G+ + S YRND
Sbjct: 61 KAIHVTGPDGDYVMGSQNELFRSNRNRYQDSESSAMYRND 100
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 5/77 (6%)
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 171
G K+++SK+G+GFIT LD+ ED+FVH+S I F+SL E V+ + +
Sbjct: 6 GTCKWFNSKKGYGFIT-LDSGEDVFVHQSEIY----ADGFRSLRENEKVELEVVLENDRK 60
Query: 172 EAINVTGPNGIPVQGAP 188
+AI+VTGP+G V G+
Sbjct: 61 KAIHVTGPDGDYVMGSQ 77
>gi|281342196|gb|EFB17780.1| hypothetical protein PANDA_017230 [Ailuropoda melanoleuca]
Length = 236
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 37/48 (77%)
Query: 39 SSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGA 86
++I K NP+K+ +S+G GE V+F++ G+K EA NVTGP G+PVQG+
Sbjct: 1 TAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGS 48
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 37/48 (77%)
Query: 140 SSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGA 187
++I K NP+K+ +S+G GE V+F++ G+K EA NVTGP G+PVQG+
Sbjct: 1 TAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGS 48
>gi|397631500|gb|EJK70178.1| hypothetical protein THAOC_08484 [Thalassiosira oceanica]
Length = 120
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 54/84 (64%), Gaps = 10/84 (11%)
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGV----G 167
G VK++DS++G+GFI D +D+FVH+++I + F+SL E V+F I V G
Sbjct: 37 GSVKWFDSEKGYGFIVPDDGSDDVFVHQTNI----NVEGFRSLADDEQVEFRIEVDDRTG 92
Query: 168 KKDIEAINVTGPNGIPVQGAPKVP 191
K+ +A +VTGP+G V+GAP P
Sbjct: 93 KR--KATDVTGPDGADVKGAPFNP 114
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 53/81 (65%), Gaps = 10/81 (12%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGV----G 66
G VK++DS++G+GFI D +D+FVH+++I + F+SL E V+F I V G
Sbjct: 37 GSVKWFDSEKGYGFIVPDDGSDDVFVHQTNI----NVEGFRSLADDEQVEFRIEVDDRTG 92
Query: 67 KKDIEAINVTGPNGIPVQGAP 87
K+ +A +VTGP+G V+GAP
Sbjct: 93 KR--KATDVTGPDGADVKGAP 111
>gi|218189944|gb|EEC72371.1| hypothetical protein OsI_05633 [Oryza sativa Indica Group]
Length = 131
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 5/79 (6%)
Query: 104 FPAVHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFN 163
A RG VK+++ +GFGFI+ D ED+FVH+SSI F+SL GE V+F
Sbjct: 1 MAAAARHRGTVKWFNDTKGFGFISPDDGSEDLFVHQSSI----KADGFRSLAEGEQVEFA 56
Query: 164 IGVGKK-DIEAINVTGPNG 181
I + +A++VTGP+G
Sbjct: 57 ISESEDGRTKAVDVTGPDG 75
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 46/72 (63%), Gaps = 5/72 (6%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK- 68
RG VK+++ +GFGFI+ D ED+FVH+SSI F+SL GE V+F I +
Sbjct: 8 RGTVKWFNDTKGFGFISPDDGSEDLFVHQSSI----KADGFRSLAEGEQVEFAISESEDG 63
Query: 69 DIEAINVTGPNG 80
+A++VTGP+G
Sbjct: 64 RTKAVDVTGPDG 75
>gi|398828297|ref|ZP_10586498.1| cold shock protein [Phyllobacterium sp. YR531]
gi|398218332|gb|EJN04842.1| cold shock protein [Phyllobacterium sp. YR531]
Length = 193
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 82/174 (47%), Gaps = 24/174 (13%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKE--DIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVG 66
V G +K++D +G+GFI DN E DI +H + + + FQ+ G V + G
Sbjct: 26 VSGAIKWFDVAKGYGFIVP-DNSELPDILLHVTCL----RRDGFQTALEGARVVCEVKQG 80
Query: 67 KKDIEAINVTGPNGI----PVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRG 122
++ ++ +V + P + P + TV+ P+ R +VK+++ +G
Sbjct: 81 ERGMQCFHVKSMDNSTAVHPTEMPPVRTHVTVT---------PSSGLERVLVKWFNRTKG 131
Query: 123 FGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINV 176
FGF+TR + EDIF+H ++ L G++V G G+K + A V
Sbjct: 132 FGFLTRGEGTEDIFIHMETLRHFG----LTELRPGQVVLIRFGNGEKGLMASEV 181
>gi|75675801|ref|YP_318222.1| cold-shock protein, DNA-binding [Nitrobacter winogradskyi Nb-255]
gi|74420671|gb|ABA04870.1| cold-shock DNA-binding protein family [Nitrobacter winogradskyi
Nb-255]
Length = 217
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 81/186 (43%), Gaps = 26/186 (13%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+ G++K++D+ +G+GFI + D+ +H V + + +Q+ G + + K
Sbjct: 51 ISGVIKWFDASKGYGFIVPDNGWPDVLLH----VTVLRRDGYQTAYEGARLVCDCVQRAK 106
Query: 69 DIEAINVTGPNGI----PVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFG 124
+A +T + P Q P + +V+ P R VK+++ RGFG
Sbjct: 107 GYQAFRITSMDESTAIHPAQMLPPRTHVSVT---------PTSGLERAQVKWFNRLRGFG 157
Query: 125 FITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPV 184
F+TR + DIFVH ++ + L G+ V G G K + A V P
Sbjct: 158 FLTRGEGTPDIFVHMETLRRFG----ITELRPGQFVLVRFGPGSKGMMAAEVQ-----PE 208
Query: 185 QGAPKV 190
GAP V
Sbjct: 209 TGAPSV 214
>gi|390449406|ref|ZP_10235012.1| cold-shock DNA-binding protein family protein [Nitratireductor
aquibiodomus RA22]
gi|389664099|gb|EIM75607.1| cold-shock DNA-binding protein family protein [Nitratireductor
aquibiodomus RA22]
Length = 274
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 82/174 (47%), Gaps = 16/174 (9%)
Query: 5 EIHTVRGIVKFYDSKRGFGFITRLDNKE--DIFVHKSSIVKMNPKKFFQSLGLGEIVDFN 62
E+ + G +K++D +G+GFI DN+E D+ +H + + K FQ+ G V
Sbjct: 104 ELVEISGAIKWFDVAKGYGFILP-DNEEHGDVLLHVTCL----RKDGFQTALEGARVVCL 158
Query: 63 IGVGKKDIEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRG 122
G+K ++A V I + A S + T+ + R IVK+++ +G
Sbjct: 159 AQQGEKGLQAFKVVS---IDLSTAVHPSEDQAPRTHV--TVVAESGLERAIVKWFNRTKG 213
Query: 123 FGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINV 176
FGF+TR + EDIFVH ++ + L G++V G G K + A V
Sbjct: 214 FGFLTRGEGTEDIFVHMETLRRYG----VTELRPGQVVLVRFGRGDKGLMAAEV 263
>gi|356538622|ref|XP_003537800.1| PREDICTED: glycine-rich protein 2b-like [Glycine max]
Length = 201
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI-GVGK 67
V G VK+++ ++GFGFIT D E++FVH+S I F+SL GE V+F I
Sbjct: 5 VSGKVKWFNDQKGFGFITPDDGSEELFVHQSQI----KSDGFRSLAEGESVEFAIESESD 60
Query: 68 KDIEAINVTGPNGIPVQ 84
+A++VTGP+G VQ
Sbjct: 61 GRAKAVDVTGPDGASVQ 77
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI-GVGK 168
V G VK+++ ++GFGFIT D E++FVH+S I F+SL GE V+F I
Sbjct: 5 VSGKVKWFNDQKGFGFITPDDGSEELFVHQSQI----KSDGFRSLAEGESVEFAIESESD 60
Query: 169 KDIEAINVTGPNGIPVQ 185
+A++VTGP+G VQ
Sbjct: 61 GRAKAVDVTGPDGASVQ 77
>gi|402851639|ref|ZP_10899785.1| Cold shock protein CspB [Rhodovulum sp. PH10]
gi|402498101|gb|EJW09867.1| Cold shock protein CspB [Rhodovulum sp. PH10]
Length = 201
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 76/177 (42%), Gaps = 22/177 (12%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G++K++D +G+GFI + D+ +H + + + FQ+ G V K
Sbjct: 35 VTGVIKWFDVAKGYGFIVPDNGMPDVLLHVTCLRRDG----FQTAYEGARVVCEALARPK 90
Query: 69 DIEAINVTGPNGI----PVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFG 124
+A + + P Q P + TV P R +VK+++ RGFG
Sbjct: 91 GFQAFRIVSMDESTAVHPAQMPPPRTHVTV---------VPTSGLERAVVKWFNRLRGFG 141
Query: 125 FITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNG 181
F+TR + DIFVH ++ + L G+ V G G K + A V P+G
Sbjct: 142 FLTRGEGTPDIFVHMETLRRYG----LTELRPGQTVLVRFGPGPKGLMAAEVR-PDG 193
>gi|239627019|ref|ZP_04670050.1| cold-shock DNA-binding domain-containing protein [Clostridiales
bacterium 1_7_47_FAA]
gi|239517165|gb|EEQ57031.1| cold-shock DNA-binding domain-containing protein [Clostridiales
bacterium 1_7_47FAA]
Length = 67
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 44/69 (63%), Gaps = 4/69 (5%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 69
+G VK+++S++GFGFIT +N EDIFVH S I F+SL G+ V F+I G +
Sbjct: 3 KGTVKWFNSQKGFGFITNAENGEDIFVHFSGI----ATDGFKSLDDGQSVTFDITNGNRG 58
Query: 70 IEAINVTGP 78
++A+NV
Sbjct: 59 LQAVNVCAA 67
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 44/69 (63%), Gaps = 4/69 (5%)
Query: 111 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 170
+G VK+++S++GFGFIT +N EDIFVH S I F+SL G+ V F+I G +
Sbjct: 3 KGTVKWFNSQKGFGFITNAENGEDIFVHFSGI----ATDGFKSLDDGQSVTFDITNGNRG 58
Query: 171 IEAINVTGP 179
++A+NV
Sbjct: 59 LQAVNVCAA 67
>gi|356559280|ref|XP_003547928.1| PREDICTED: DNA-binding protein HEXBP-like [Glycine max]
Length = 250
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 54/82 (65%), Gaps = 7/82 (8%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD- 69
G+V+++++ +GFGFI D ED+FVH+SSI +++L G+ V+F I G D
Sbjct: 8 GVVQWFNNGKGFGFIKPDDGGEDLFVHQSSI----RSDGYRTLLEGDRVEFAIATGDNDK 63
Query: 70 IEAINVTGPNGIPVQGAPKSSS 91
+A++VTG +G P+Q P++S+
Sbjct: 64 TKAVDVTGVDGAPLQ--PRASA 83
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 49/75 (65%), Gaps = 5/75 (6%)
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD- 170
G+V+++++ +GFGFI D ED+FVH+SSI +++L G+ V+F I G D
Sbjct: 8 GVVQWFNNGKGFGFIKPDDGGEDLFVHQSSI----RSDGYRTLLEGDRVEFAIATGDNDK 63
Query: 171 IEAINVTGPNGIPVQ 185
+A++VTG +G P+Q
Sbjct: 64 TKAVDVTGVDGAPLQ 78
>gi|345302101|ref|YP_004824003.1| cold-shock DNA-binding domain-containing protein [Rhodothermus
marinus SG0.5JP17-172]
gi|345111334|gb|AEN72166.1| cold-shock DNA-binding domain protein [Rhodothermus marinus
SG0.5JP17-172]
Length = 95
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 51/82 (62%), Gaps = 8/82 (9%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 69
RG+VK++D+K+G+GFI + DIFVH S I+ ++ F++L G+IV+F + G K
Sbjct: 5 RGVVKWFDAKKGYGFIIHPEGGADIFVHYSQIIS---ERRFKTLRTGQIVEFELHEGPKG 61
Query: 70 IEAINVTGPNGIPVQGAPKSSS 91
+ A NV +P+ A + ++
Sbjct: 62 LHARNV-----VPLDEAQRKAA 78
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 44/66 (66%), Gaps = 3/66 (4%)
Query: 111 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 170
RG+VK++D+K+G+GFI + DIFVH S I+ ++ F++L G+IV+F + G K
Sbjct: 5 RGVVKWFDAKKGYGFIIHPEGGADIFVHYSQIIS---ERRFKTLRTGQIVEFELHEGPKG 61
Query: 171 IEAINV 176
+ A NV
Sbjct: 62 LHARNV 67
>gi|77462899|ref|YP_352403.1| cold-shock DNA-binding protein family protein [Rhodobacter
sphaeroides 2.4.1]
gi|126461790|ref|YP_001042904.1| cold-shock DNA-binding domain-containing protein [Rhodobacter
sphaeroides ATCC 17029]
gi|221638771|ref|YP_002525033.1| Cold-shock DNA-binding protein family [Rhodobacter sphaeroides
KD131]
gi|332557790|ref|ZP_08412112.1| cold-shock DNA-binding domain-containing protein [Rhodobacter
sphaeroides WS8N]
gi|77387317|gb|ABA78502.1| cold-shock DNA-binding protein family [Rhodobacter sphaeroides
2.4.1]
gi|126103454|gb|ABN76132.1| cold-shock DNA-binding protein family [Rhodobacter sphaeroides ATCC
17029]
gi|221159552|gb|ACM00532.1| Cold-shock DNA-binding protein family precursor [Rhodobacter
sphaeroides KD131]
gi|332275502|gb|EGJ20817.1| cold-shock DNA-binding domain-containing protein [Rhodobacter
sphaeroides WS8N]
Length = 180
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 74/175 (42%), Gaps = 20/175 (11%)
Query: 6 IHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGV 65
+ V G VK++D +GFGFI +N DI +H + + G+ V +
Sbjct: 8 LQLVHGRVKWFDPAKGFGFIVTEENGADILLHANVLRNYGQSSVADGAGITVKVQ-STQR 66
Query: 66 GKKDIEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVR----GIVKFYDSKR 121
G + +E I + P G + S + T P R G VK++D +
Sbjct: 67 GVQAVEVIEIEPPEGTTFHLSEDSEATT-----------PEEIAARPLEPGRVKWFDKGK 115
Query: 122 GFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINV 176
GFGF ED+F+H +++M+ F L GE V I G++ A+ V
Sbjct: 116 GFGFANVFGRPEDVFIH-VEVLRMSG---FADLAAGEAVALRIIEGRRGRMAVQV 166
Score = 36.6 bits (83), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 106 AVHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIG 165
A+ V G VK++D +GFGFI +N DI +H + + G+ V +
Sbjct: 7 ALQLVHGRVKWFDPAKGFGFIVTEENGADILLHANVLRNYGQSSVADGAGITVKVQ-STQ 65
Query: 166 VGKKDIEAINVTGPNG 181
G + +E I + P G
Sbjct: 66 RGVQAVEVIEIEPPEG 81
>gi|49475595|ref|YP_033636.1| cold shock protein [Bartonella henselae str. Houston-1]
gi|49238402|emb|CAF27629.1| Cold shock protein [Bartonella henselae str. Houston-1]
Length = 191
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 82/180 (45%), Gaps = 15/180 (8%)
Query: 5 EIHTVRGIVKFYDSKRGFGFIT-RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
EI + G++K++D +G+GFI L N DI +H V + + FQ++ G V +
Sbjct: 22 EIIEISGVIKWFDGSKGYGFIVPDLPNCPDILLH----VTVMRRDGFQTVLEGAKVVCAV 77
Query: 64 GVGKKDIEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGF 123
++ ++ + + + +S + T + P R IVK+++ +GF
Sbjct: 78 EKTERGLKCVQIKSIDCSSAIHPAESPART------HVVVTPESGLERAIVKWFNRDKGF 131
Query: 124 GFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIP 183
GF++R EDIFVH ++ + L G++V G G+K + + IP
Sbjct: 132 GFLSRGQGTEDIFVHMETLRRFG----LAELRSGQVVLVRFGKGEKGLMTAEIYPDINIP 187
>gi|47214418|emb|CAG00259.1| unnamed protein product [Tetraodon nigroviridis]
Length = 179
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 11/87 (12%)
Query: 112 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 164
G+ K+++ + GFGFI+ LD D+FVH+S + + F+SL GE ++F+
Sbjct: 6 GVCKWFNMRMGFGFISMSSRDGAPLDQNLDVFVHQSKLHM----EGFRSLREGEALEFSF 61
Query: 165 GVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +EA+ V+GP G P G+ + P
Sbjct: 62 KKSSKGLEAVRVSGPGGAPCLGSKRRP 88
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 14/90 (15%)
Query: 11 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
G+ K+++ + GFGFI+ LD D+FVH+S + + F+SL GE ++F+
Sbjct: 6 GVCKWFNMRMGFGFISMSSRDGAPLDQNLDVFVHQSKLHM----EGFRSLREGEALEFSF 61
Query: 64 GVGKKDIEAINVTGPNGIPVQGA---PKSS 90
K +EA+ V+GP G P G+ PKSS
Sbjct: 62 KKSSKGLEAVRVSGPGGAPCLGSKRRPKSS 91
>gi|321173537|gb|ADW77531.1| cold-shock-like protein [Heterodera glycines]
Length = 221
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 48/75 (64%), Gaps = 2/75 (2%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK++D +G+GFITR D +D+F+H SSIV+ F L G+ V+F++ G+K
Sbjct: 15 VSGRVKWFDFSKGYGFITRDDGGQDVFLHASSIVRKVNMYFV--LIEGQRVEFDVIDGEK 72
Query: 69 DIEAINVTGPNGIPV 83
EA V+GP GI V
Sbjct: 73 GREAAAVSGPGGIRV 87
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 48/75 (64%), Gaps = 2/75 (2%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK++D +G+GFITR D +D+F+H SSIV+ F L G+ V+F++ G+K
Sbjct: 15 VSGRVKWFDFSKGYGFITRDDGGQDVFLHASSIVRKVNMYFV--LIEGQRVEFDVIDGEK 72
Query: 170 DIEAINVTGPNGIPV 184
EA V+GP GI V
Sbjct: 73 GREAAAVSGPGGIRV 87
>gi|392380052|ref|YP_004987210.1| putative Cold-shock DNA-binding protein (fragment), partial
[Azospirillum brasilense Sp245]
gi|356882419|emb|CCD03431.1| putative Cold-shock DNA-binding protein (fragment) [Azospirillum
brasilense Sp245]
Length = 151
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 64/134 (47%), Gaps = 12/134 (8%)
Query: 13 VKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEA 72
+K++D +GFGF+ D D F+H S + + +G G + + G K +
Sbjct: 1 MKWFDPVKGFGFVAPQDGTTDAFLHFSVLNRAG----LHEIGEGAELLCRVVPGAKGPQV 56
Query: 73 INVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFITRLDNK 132
++ + G P S T R+D+ + G VK++ ++GFGF+T D
Sbjct: 57 ADILD---VLSTGTPAESRNT-----RHDAASGPEEELTGTVKWFKPEQGFGFVTADDGA 108
Query: 133 EDIFVHKSSIVKMN 146
+D+FVHKS + + N
Sbjct: 109 KDVFVHKSVLRRCN 122
Score = 40.4 bits (93), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 25/35 (71%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMN 45
G VK++ ++GFGF+T D +D+FVHKS + + N
Sbjct: 88 GTVKWFKPEQGFGFVTADDGAKDVFVHKSVLRRCN 122
>gi|41052630|dbj|BAD08139.1| putative Glycine-rich protein 2 [Oryza sativa Japonica Group]
gi|41052743|dbj|BAD07599.1| putative Glycine-rich protein 2 [Oryza sativa Japonica Group]
gi|125580606|gb|EAZ21537.1| hypothetical protein OsJ_05164 [Oryza sativa Japonica Group]
gi|187609561|gb|ACD13288.1| cold shock domain protein 1 [Oryza sativa Japonica Group]
gi|215767546|dbj|BAG99774.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 241
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 5/82 (6%)
Query: 105 PAVHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 164
A RG VK+++ +GFGFI+ D ED+FVH+SSI F+SL GE V+F I
Sbjct: 2 AAAARHRGTVKWFNDTKGFGFISPDDGSEDLFVHQSSI----KADGFRSLAEGEQVEFAI 57
Query: 165 GVGKK-DIEAINVTGPNGIPVQ 185
+ +A++VTGP+G V+
Sbjct: 58 SESEDGRTKAVDVTGPDGSFVK 79
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 48/76 (63%), Gaps = 5/76 (6%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK- 68
RG VK+++ +GFGFI+ D ED+FVH+SSI F+SL GE V+F I +
Sbjct: 8 RGTVKWFNDTKGFGFISPDDGSEDLFVHQSSI----KADGFRSLAEGEQVEFAISESEDG 63
Query: 69 DIEAINVTGPNGIPVQ 84
+A++VTGP+G V+
Sbjct: 64 RTKAVDVTGPDGSFVK 79
>gi|395793403|ref|ZP_10472805.1| hypothetical protein MEI_01426 [Bartonella vinsonii subsp.
arupensis Pm136co]
gi|423713920|ref|ZP_17688180.1| hypothetical protein ME1_00926 [Bartonella vinsonii subsp.
arupensis OK-94-513]
gi|395421726|gb|EJF87962.1| hypothetical protein ME1_00926 [Bartonella vinsonii subsp.
arupensis OK-94-513]
gi|395430785|gb|EJF96814.1| hypothetical protein MEI_01426 [Bartonella vinsonii subsp.
arupensis Pm136co]
Length = 191
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 83/192 (43%), Gaps = 39/192 (20%)
Query: 5 EIHTVRGIVKFYDSKRGFGFIT-RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
EI + G++K++D +G+GFI L N DI +H V + + FQ+ G V +
Sbjct: 22 EIIEISGVIKWFDGSKGYGFIVPDLPNFPDILLH----VTVMRRDGFQTALEGAKVICAV 77
Query: 64 --------GVGKKDIEAINVTGPNGIPVQG----APKSSSETVSGTYRNDSFFPAVHTVR 111
V K I+ + P IPV+ P+S E R
Sbjct: 78 ERTERGLKCVQVKSIDCSSAVHPLEIPVRTHVVVTPESGLE------------------R 119
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 171
IVK+++ +GFGF++R EDIF+H ++ + L G++V G G+K +
Sbjct: 120 AIVKWFNRDKGFGFLSRGQGTEDIFIHMETLRRFG----LAELRSGQVVLVRFGKGEKGL 175
Query: 172 EAINVTGPNGIP 183
+ GIP
Sbjct: 176 MTAEIYPDIGIP 187
>gi|71027909|ref|XP_763598.1| cold shock protein [Theileria parva strain Muguga]
gi|68350551|gb|EAN31315.1| cold shock protein, putative [Theileria parva]
Length = 94
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 49/78 (62%), Gaps = 5/78 (6%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+ G+ K++++K+G+GFIT L+N ED+FVH+S I F+SL E V+ + +
Sbjct: 4 LNGVCKWFNNKKGYGFIT-LENGEDVFVHQSEIYA----DGFRSLRENEKVELEVIMDNN 58
Query: 69 DIEAINVTGPNGIPVQGA 86
+AI+VTGPNG V G
Sbjct: 59 RKKAIHVTGPNGSHVTGT 76
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 49/78 (62%), Gaps = 5/78 (6%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+ G+ K++++K+G+GFIT L+N ED+FVH+S I F+SL E V+ + +
Sbjct: 4 LNGVCKWFNNKKGYGFIT-LENGEDVFVHQSEIYA----DGFRSLRENEKVELEVIMDNN 58
Query: 170 DIEAINVTGPNGIPVQGA 187
+AI+VTGPNG V G
Sbjct: 59 RKKAIHVTGPNGSHVTGT 76
>gi|432945498|ref|XP_004083628.1| PREDICTED: protein lin-28 homolog B-like [Oryzias latipes]
Length = 243
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 54/108 (50%), Gaps = 13/108 (12%)
Query: 92 ETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFITRLDNKE--------DIFVHKSSIV 143
E + D P V + G K+++ + GFGFI+ + N E D+FVH+S +V
Sbjct: 22 EPAKAAEQEDRTRPQVLSGSGFCKWFNVRMGFGFIS-MTNSEGSPVEPPLDVFVHQSKLV 80
Query: 144 KMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGAPKVP 191
F+SL GE V+F K +E++ VTGP G P G+ + P
Sbjct: 81 MEG----FRSLKEGEQVEFTYKKSSKGLESLRVTGPGGGPCVGSERRP 124
Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 13/93 (13%)
Query: 2 TKFEIHTVRGIVKFYDSKRGFGFITRLDNKE--------DIFVHKSSIVKMNPKKFFQSL 53
T+ ++ + G K+++ + GFGFI+ + N E D+FVH+S +V F+SL
Sbjct: 33 TRPQVLSGSGFCKWFNVRMGFGFIS-MTNSEGSPVEPPLDVFVHQSKLVMEG----FRSL 87
Query: 54 GLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGA 86
GE V+F K +E++ VTGP G P G+
Sbjct: 88 KEGEQVEFTYKKSSKGLESLRVTGPGGGPCVGS 120
>gi|327284528|ref|XP_003226989.1| PREDICTED: protein lin-28 homolog B-like [Anolis carolinensis]
Length = 320
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 11/87 (12%)
Query: 112 GIVKFYDSKRGFGFITRL-------DNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 164
G K+++ + GFGFI+ L D+ D+FVH+S + F+SL GE V+F
Sbjct: 102 GHCKWFNVRMGFGFISMLHREGSPLDSPVDVFVHQSKLYMEG----FRSLKEGEPVEFTF 157
Query: 165 GVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP GIP G+ + P
Sbjct: 158 KKSSKGLESIRVTGPGGIPCLGSERRP 184
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 46/83 (55%), Gaps = 11/83 (13%)
Query: 11 GIVKFYDSKRGFGFITRL-------DNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
G K+++ + GFGFI+ L D+ D+FVH+S + F+SL GE V+F
Sbjct: 102 GHCKWFNVRMGFGFISMLHREGSPLDSPVDVFVHQSKLYMEG----FRSLKEGEPVEFTF 157
Query: 64 GVGKKDIEAINVTGPNGIPVQGA 86
K +E+I VTGP GIP G+
Sbjct: 158 KKSSKGLESIRVTGPGGIPCLGS 180
>gi|242074456|ref|XP_002447164.1| hypothetical protein SORBIDRAFT_06g029650 [Sorghum bicolor]
gi|241938347|gb|EES11492.1| hypothetical protein SORBIDRAFT_06g029650 [Sorghum bicolor]
Length = 215
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 50/85 (58%), Gaps = 5/85 (5%)
Query: 106 AVHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIG 165
A V G VK+++ +GFGFIT D ED+FVH+SSI ++SL GE V++ +G
Sbjct: 2 AEERVTGTVKWFNVDKGFGFITPDDASEDLFVHQSSI----KCDGYRSLKEGEAVEYTVG 57
Query: 166 VGKK-DIEAINVTGPNGIPVQGAPK 189
G+ +A++VT P G + G +
Sbjct: 58 SGQDGRTKAMDVTAPGGGNLAGGER 82
Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 49/81 (60%), Gaps = 5/81 (6%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ +GFGFIT D ED+FVH+SSI ++SL GE V++ +G G+
Sbjct: 6 VTGTVKWFNVDKGFGFITPDDASEDLFVHQSSI----KCDGYRSLKEGEAVEYTVGSGQD 61
Query: 69 -DIEAINVTGPNGIPVQGAPK 88
+A++VT P G + G +
Sbjct: 62 GRTKAMDVTAPGGGNLAGGER 82
>gi|148555471|ref|YP_001263053.1| cold-shock DNA-binding protein family protein [Sphingomonas
wittichii RW1]
gi|148500661|gb|ABQ68915.1| cold-shock DNA-binding protein family [Sphingomonas wittichii RW1]
Length = 198
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 70/139 (50%), Gaps = 4/139 (2%)
Query: 7 HTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLG-EIVDFNIGV 65
TV G VK++D+ RGFGFI ++ D+ VH S + + + + E+V + G+
Sbjct: 32 ETVVGAVKWFDATRGFGFIATDGDRGDVLVHFSVLRDHGRRTLPEGARIACEVVARDRGL 91
Query: 66 GKKDIEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGF 125
+ I AI+++ G K +++ V T D A IVK+++ +G+GF
Sbjct: 92 QARRILAIDLSTATGPDPDLIAKRNADRVDPTQLVDQ---AGEPEPVIVKWFNRLKGYGF 148
Query: 126 ITRLDNKEDIFVHKSSIVK 144
+ R +DIF+H ++ +
Sbjct: 149 LVRDGETQDIFIHMETVRR 167
>gi|302829474|ref|XP_002946304.1| nucleic acid binding protein [Volvox carteri f. nagariensis]
gi|121077603|gb|ABM47305.1| nucleic acid binding protein [Volvox carteri f. nagariensis]
gi|300269119|gb|EFJ53299.1| nucleic acid binding protein [Volvox carteri f. nagariensis]
Length = 242
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 50/81 (61%), Gaps = 5/81 (6%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 69
RG VK++++ +GFGFIT ED FVH+++I F+SL GE V+F + G
Sbjct: 8 RGTVKWFNATKGFGFITPEGGGEDFFVHQTNINSDG----FRSLREGEAVEFEVEAGPDG 63
Query: 70 -IEAINVTGPNGIPVQGAPKS 89
+A++V+GP G +GAP++
Sbjct: 64 RSKAVSVSGPGGSAPEGAPRN 84
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 49/80 (61%), Gaps = 5/80 (6%)
Query: 111 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 170
RG VK++++ +GFGFIT ED FVH+++I F+SL GE V+F + G
Sbjct: 8 RGTVKWFNATKGFGFITPEGGGEDFFVHQTNINSDG----FRSLREGEAVEFEVEAGPDG 63
Query: 171 -IEAINVTGPNGIPVQGAPK 189
+A++V+GP G +GAP+
Sbjct: 64 RSKAVSVSGPGGSAPEGAPR 83
>gi|268315810|ref|YP_003289529.1| cold-shock DNA-binding domain-containing protein [Rhodothermus
marinus DSM 4252]
gi|262333344|gb|ACY47141.1| cold-shock DNA-binding domain protein [Rhodothermus marinus DSM
4252]
Length = 95
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 44/66 (66%), Gaps = 3/66 (4%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 69
RG+VK++D+K+G+GFI + DIFVH S I+ ++ F++L G+IV+F + G K
Sbjct: 5 RGVVKWFDAKKGYGFIIHPEGGADIFVHYSQIIS---ERRFKTLRTGQIVEFELHEGPKG 61
Query: 70 IEAINV 75
+ A NV
Sbjct: 62 LHARNV 67
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 44/66 (66%), Gaps = 3/66 (4%)
Query: 111 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 170
RG+VK++D+K+G+GFI + DIFVH S I+ ++ F++L G+IV+F + G K
Sbjct: 5 RGVVKWFDAKKGYGFIIHPEGGADIFVHYSQIIS---ERRFKTLRTGQIVEFELHEGPKG 61
Query: 171 IEAINV 176
+ A NV
Sbjct: 62 LHARNV 67
>gi|153009253|ref|YP_001370468.1| cold-shock DNA-binding domain-containing protein [Ochrobactrum
anthropi ATCC 49188]
gi|404318956|ref|ZP_10966889.1| cold-shock family protein [Ochrobactrum anthropi CTS-325]
gi|151561141|gb|ABS14639.1| putative cold-shock DNA-binding domain protein [Ochrobactrum
anthropi ATCC 49188]
Length = 193
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 81/177 (45%), Gaps = 22/177 (12%)
Query: 5 EIHTVRGIVKFYDSKRGFGFIT-RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
+I V G +K++D +G+GFI DI +H +S+ + FQ+ G + +
Sbjct: 22 DIIEVSGHIKWFDVAKGYGFIVPDQPGLNDILLHVTSL----RRDGFQTALEGARIVCEV 77
Query: 64 GVGKKDIEAINV----TGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDS 119
G + ++ V T P Q P+ + TV+ P+ R IVK+++
Sbjct: 78 RNGDRGLQCFRVLSMDTSTAVHPAQMPPQRTHVTVT---------PSSGLERVIVKWFNR 128
Query: 120 KRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINV 176
+GFGF+TR + EDIF+H ++ + L G++V G G K + A +
Sbjct: 129 TKGFGFLTRGEGTEDIFIHMETLRRFG----MMELRPGQVVLIRFGEGDKGLMAAEI 181
>gi|224078196|ref|XP_002305502.1| predicted protein [Populus trichocarpa]
gi|222848466|gb|EEE86013.1| predicted protein [Populus trichocarpa]
Length = 207
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 50/78 (64%), Gaps = 9/78 (11%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDF---NIGVGK 67
G VK++ ++GFGFI+ D +D+FVH+SSI + ++SLG GE V+F N G+
Sbjct: 7 GKVKWFSDQKGFGFISPDDGSDDLFVHQSSI----KSEGYRSLGDGEEVEFVIENSDDGR 62
Query: 68 KDIEAINVTGPNGIPVQG 85
+A++VT P G PVQG
Sbjct: 63 --TKAVDVTAPGGNPVQG 78
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 50/78 (64%), Gaps = 9/78 (11%)
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDF---NIGVGK 168
G VK++ ++GFGFI+ D +D+FVH+SSI + ++SLG GE V+F N G+
Sbjct: 7 GKVKWFSDQKGFGFISPDDGSDDLFVHQSSI----KSEGYRSLGDGEEVEFVIENSDDGR 62
Query: 169 KDIEAINVTGPNGIPVQG 186
+A++VT P G PVQG
Sbjct: 63 --TKAVDVTAPGGNPVQG 78
>gi|328850349|gb|EGF99515.1| hypothetical protein MELLADRAFT_94308 [Melampsora larici-populina
98AG31]
Length = 432
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 50/90 (55%), Gaps = 12/90 (13%)
Query: 112 GIVKFYDSKRGFGFITRLDNKE----------DIFVHKSSIVKMNPKKFFQSLGLGEIVD 161
G KF+++ +GFGFI + E DIFVH S I + + F+SL GE V+
Sbjct: 99 GFCKFFNAGKGFGFIQDDNPAELPTMDGDPGTDIFVHYSCITRCD--AGFKSLLDGEKVE 156
Query: 162 FNIGVGKKDIEAINVTGPNGIPVQGAPKVP 191
+ +G K + A+++TGP G PV+GA P
Sbjct: 157 YVLGRSNKGLAALDITGPGGAPVKGASSNP 186
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 49/86 (56%), Gaps = 12/86 (13%)
Query: 11 GIVKFYDSKRGFGFITRLDNKE----------DIFVHKSSIVKMNPKKFFQSLGLGEIVD 60
G KF+++ +GFGFI + E DIFVH S I + + F+SL GE V+
Sbjct: 99 GFCKFFNAGKGFGFIQDDNPAELPTMDGDPGTDIFVHYSCITRCD--AGFKSLLDGEKVE 156
Query: 61 FNIGVGKKDIEAINVTGPNGIPVQGA 86
+ +G K + A+++TGP G PV+GA
Sbjct: 157 YVLGRSNKGLAALDITGPGGAPVKGA 182
>gi|408380418|ref|ZP_11178002.1| cold shock protein [Agrobacterium albertimagni AOL15]
gi|407745631|gb|EKF57163.1| cold shock protein [Agrobacterium albertimagni AOL15]
Length = 192
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 79/180 (43%), Gaps = 15/180 (8%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+ G+VK++D +GFGFI + +D+ +H + + + + + + ++ G +
Sbjct: 26 ITGVVKWFDVAKGFGFIVPDNGMQDVLLHVTCLRRDGYQTILEGTRIVALIQ-KRDRGYQ 84
Query: 69 DIEAINVTGPNGI-PVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFIT 127
+++ I P Q P + V+ P R +VK+++ +GFGF+T
Sbjct: 85 AFRILSMDQSTAIHPSQMPPVRTHVQVT---------PTSGLERALVKWFNRTKGFGFLT 135
Query: 128 RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGA 187
R + EDIFVH ++ + L G+ V G G K + A + N P A
Sbjct: 136 RGEGTEDIFVHMETLRRFG----LTELRPGQTVLVRFGPGDKGLMAAEIHPDNPGPAARA 191
>gi|15644617|ref|NP_229670.1| cold shock protein [Thermotoga maritima MSB8]
gi|148270057|ref|YP_001244517.1| cold-shock DNA-binding domain-containing protein [Thermotoga
petrophila RKU-1]
gi|170288741|ref|YP_001738979.1| cold-shock DNA-binding domain-containing protein [Thermotoga sp.
RQ2]
gi|281412062|ref|YP_003346141.1| cold-shock DNA-binding domain protein [Thermotoga naphthophila
RKU-10]
gi|418045937|ref|ZP_12684032.1| cold-shock DNA-binding domain protein [Thermotoga maritima MSB8]
gi|4982460|gb|AAD36936.1|AE001824_5 cold shock protein [Thermotoga maritima MSB8]
gi|147735601|gb|ABQ46941.1| cold-shock DNA-binding protein family [Thermotoga petrophila
RKU-1]
gi|170176244|gb|ACB09296.1| cold-shock DNA-binding domain protein [Thermotoga sp. RQ2]
gi|281373165|gb|ADA66727.1| cold-shock DNA-binding domain protein [Thermotoga naphthophila
RKU-10]
gi|351676822|gb|EHA59975.1| cold-shock DNA-binding domain protein [Thermotoga maritima MSB8]
Length = 66
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 48/67 (71%), Gaps = 5/67 (7%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+RG VK++DSK+G+GFIT ++N EDIFVH S+I +M+ F++L E V+F + G K
Sbjct: 1 MRGTVKWFDSKKGYGFIT-MENGEDIFVHWSAI-QMDG---FKTLRENETVEFEVQKGTK 55
Query: 69 DIEAINV 75
+A+NV
Sbjct: 56 GPQAVNV 62
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 48/67 (71%), Gaps = 5/67 (7%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+RG VK++DSK+G+GFIT ++N EDIFVH S+I +M+ F++L E V+F + G K
Sbjct: 1 MRGTVKWFDSKKGYGFIT-MENGEDIFVHWSAI-QMDG---FKTLRENETVEFEVQKGTK 55
Query: 170 DIEAINV 176
+A+NV
Sbjct: 56 GPQAVNV 62
>gi|395765792|ref|ZP_10446383.1| hypothetical protein MCO_01259 [Bartonella sp. DB5-6]
gi|395410797|gb|EJF77344.1| hypothetical protein MCO_01259 [Bartonella sp. DB5-6]
Length = 191
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 83/192 (43%), Gaps = 39/192 (20%)
Query: 5 EIHTVRGIVKFYDSKRGFGFIT-RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
EI + G++K++D +G+GFI L N DI +H V + + FQ+ G V +
Sbjct: 22 EIIEISGVIKWFDGSKGYGFIIPDLPNFPDILLH----VTVMRRDGFQTALEGAKVVCAV 77
Query: 64 --------GVGKKDIEAINVTGPNGIPVQG----APKSSSETVSGTYRNDSFFPAVHTVR 111
V K I+ + P+ IP + P+S E R
Sbjct: 78 EKTERGLKCVQVKSIDCSSAIHPSEIPARTHVVVTPESGLE------------------R 119
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 171
IVK+++ +GFGF++R EDIF+H ++ + L G++V G G+K +
Sbjct: 120 AIVKWFNRDKGFGFLSRGQGTEDIFIHMETLRRFG----LAELRSGQVVLVRFGKGEKGL 175
Query: 172 EAINVTGPNGIP 183
+ GIP
Sbjct: 176 MTAEIYPDIGIP 187
>gi|126328607|ref|XP_001363469.1| PREDICTED: protein lin-28 homolog A [Monodelphis domestica]
Length = 205
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 11/114 (9%)
Query: 85 GAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFIT-------RLDNKEDIFV 137
G K++ E +G P GI K+++ + GFGF++ LD D+FV
Sbjct: 12 GCAKAAEEAATGDAARAGEEPQPLHGAGICKWFNVRMGFGFLSMTARAGVALDQPVDVFV 71
Query: 138 HKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGAPKVP 191
H+S + F+SL GE V+F K +E+I VTGP G+ G+ + P
Sbjct: 72 HQSKLHMEG----FRSLKEGEAVEFTFKKSAKGLESIRVTGPGGVFCLGSERRP 121
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 11/78 (14%)
Query: 11 GIVKFYDSKRGFGFIT-------RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
GI K+++ + GFGF++ LD D+FVH+S + F+SL GE V+F
Sbjct: 39 GICKWFNVRMGFGFLSMTARAGVALDQPVDVFVHQSKLHMEG----FRSLKEGEAVEFTF 94
Query: 64 GVGKKDIEAINVTGPNGI 81
K +E+I VTGP G+
Sbjct: 95 KKSAKGLESIRVTGPGGV 112
>gi|302822137|ref|XP_002992728.1| hypothetical protein SELMODRAFT_186937 [Selaginella moellendorffii]
gi|300139469|gb|EFJ06209.1| hypothetical protein SELMODRAFT_186937 [Selaginella moellendorffii]
Length = 159
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 48/81 (59%), Gaps = 5/81 (6%)
Query: 106 AVHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIG 165
A G VK+++S +GFGFIT D ED+FVH+SSI F+SL GE V+F I
Sbjct: 4 ATEKKSGKVKWFNSAKGFGFITPDDGGEDLFVHQSSIHADG----FRSLKDGEAVEFTID 59
Query: 166 VGKK-DIEAINVTGPNGIPVQ 185
+ +A++VTGP G VQ
Sbjct: 60 RSEDGRTKALDVTGPEGSFVQ 80
Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 47/75 (62%), Gaps = 5/75 (6%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK-D 69
G VK+++S +GFGFIT D ED+FVH+SSI F+SL GE V+F I +
Sbjct: 10 GKVKWFNSAKGFGFITPDDGGEDLFVHQSSIHADG----FRSLKDGEAVEFTIDRSEDGR 65
Query: 70 IEAINVTGPNGIPVQ 84
+A++VTGP G VQ
Sbjct: 66 TKALDVTGPEGSFVQ 80
>gi|41055233|ref|NP_957385.1| protein lin-28 homolog A [Danio rerio]
gi|82241857|sp|Q803L0.1|LN28A_DANRE RecName: Full=Protein lin-28 homolog A; Short=Lin-28A
gi|27882510|gb|AAH44433.1| Lin-28 homolog (C. elegans) [Danio rerio]
Length = 202
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 11/87 (12%)
Query: 112 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 164
G+ K+++ + GFGF++ LD+ D+FVH+S + + F+SL GE V+F
Sbjct: 36 GVCKWFNVRMGFGFLSMTHREGICLDSPVDVFVHQSKLHM----EGFRSLKEGEAVEFTF 91
Query: 165 GVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E++ VTGP G P G+ K P
Sbjct: 92 KRSSKGLESLQVTGPGGAPCVGSEKKP 118
Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 11/101 (10%)
Query: 11 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
G+ K+++ + GFGF++ LD+ D+FVH+S + + F+SL GE V+F
Sbjct: 36 GVCKWFNVRMGFGFLSMTHREGICLDSPVDVFVHQSKLHM----EGFRSLKEGEAVEFTF 91
Query: 64 GVGKKDIEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFF 104
K +E++ VTGP G P G+ K T + D F
Sbjct: 92 KRSSKGLESLQVTGPGGAPCVGSEKKPKGTQKRRSKGDRCF 132
>gi|170032093|ref|XP_001843917.1| Y-box binding protein [Culex quinquefasciatus]
gi|167871866|gb|EDS35249.1| Y-box binding protein [Culex quinquefasciatus]
Length = 266
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 38/49 (77%)
Query: 39 SSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGAP 87
++I + NPKK +S+G GE+V+F++ +G+K EA NVTGP G PV+G+P
Sbjct: 5 TTIARNNPKKAVRSVGDGEVVEFDVVIGEKGNEAANVTGPQGEPVKGSP 53
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 38/49 (77%)
Query: 140 SSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGAP 188
++I + NPKK +S+G GE+V+F++ +G+K EA NVTGP G PV+G+P
Sbjct: 5 TTIARNNPKKAVRSVGDGEVVEFDVVIGEKGNEAANVTGPQGEPVKGSP 53
>gi|163785452|ref|ZP_02180056.1| cold-shock DNA-binding domain protein [Hydrogenivirga sp.
128-5-R1-1]
gi|159879278|gb|EDP73178.1| cold-shock DNA-binding domain protein [Hydrogenivirga sp.
128-5-R1-1]
Length = 69
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 43/69 (62%), Gaps = 4/69 (5%)
Query: 8 TVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGK 67
+ G VK++DSK+GFGFITR D EDIFVH S+I F++L GE V+F + +
Sbjct: 2 STTGTVKWFDSKKGFGFITREDTGEDIFVHFSAINGQG----FKNLEEGEKVEFEVVQDE 57
Query: 68 KDIEAINVT 76
K A NVT
Sbjct: 58 KGFRAANVT 66
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 43/69 (62%), Gaps = 4/69 (5%)
Query: 109 TVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGK 168
+ G VK++DSK+GFGFITR D EDIFVH S+I F++L GE V+F + +
Sbjct: 2 STTGTVKWFDSKKGFGFITREDTGEDIFVHFSAINGQG----FKNLEEGEKVEFEVVQDE 57
Query: 169 KDIEAINVT 177
K A NVT
Sbjct: 58 KGFRAANVT 66
>gi|156394304|ref|XP_001636766.1| predicted protein [Nematostella vectensis]
gi|156223872|gb|EDO44703.1| predicted protein [Nematostella vectensis]
Length = 671
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 8 TVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGK 67
T G VK+++ +GFGFITR D ED+FVH+S+I ++SL GE V I
Sbjct: 482 TCTGSVKWFNLIKGFGFITRDDGGEDVFVHQSAI----KASGYRSLEEGEHVQLTISNSD 537
Query: 68 KDIEAINVTGPNGIPVQGAPK 88
K AI VT P G V+GA +
Sbjct: 538 KGKVAICVTSPGGGNVKGASR 558
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 109 TVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGK 168
T G VK+++ +GFGFITR D ED+FVH+S+I ++SL GE V I
Sbjct: 482 TCTGSVKWFNLIKGFGFITRDDGGEDVFVHQSAI----KASGYRSLEEGEHVQLTISNSD 537
Query: 169 KDIEAINVTGPNGIPVQGAPK 189
K AI VT P G V+GA +
Sbjct: 538 KGKVAICVTSPGGGNVKGASR 558
>gi|168022724|ref|XP_001763889.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162684894|gb|EDQ71293.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 198
Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 49/77 (63%), Gaps = 5/77 (6%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD- 69
G VK+++S +GFGFIT +D+FVH++SI + F+SL GE+V+F + +
Sbjct: 16 GKVKWFNSSKGFGFITPDKGGDDLFVHQTSI----HAEGFRSLREGEVVEFQVESSEDGR 71
Query: 70 IEAINVTGPNGIPVQGA 86
+A+ VTGP G VQGA
Sbjct: 72 TKALAVTGPGGAFVQGA 88
Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 49/77 (63%), Gaps = 5/77 (6%)
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD- 170
G VK+++S +GFGFIT +D+FVH++SI + F+SL GE+V+F + +
Sbjct: 16 GKVKWFNSSKGFGFITPDKGGDDLFVHQTSI----HAEGFRSLREGEVVEFQVESSEDGR 71
Query: 171 IEAINVTGPNGIPVQGA 187
+A+ VTGP G VQGA
Sbjct: 72 TKALAVTGPGGAFVQGA 88
>gi|403253191|ref|ZP_10919494.1| cold shock protein [Thermotoga sp. EMP]
gi|402811455|gb|EJX25941.1| cold shock protein [Thermotoga sp. EMP]
Length = 66
Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 48/67 (71%), Gaps = 5/67 (7%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+RG VK++DSK+G+GFIT ++N EDIFVH S+I +M+ F++L E V+F + G K
Sbjct: 1 MRGTVKWFDSKKGYGFIT-MENGEDIFVHWSAI-QMDG---FKTLRENESVEFEVQQGTK 55
Query: 69 DIEAINV 75
+A+NV
Sbjct: 56 GPQAVNV 62
Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 48/67 (71%), Gaps = 5/67 (7%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+RG VK++DSK+G+GFIT ++N EDIFVH S+I +M+ F++L E V+F + G K
Sbjct: 1 MRGTVKWFDSKKGYGFIT-MENGEDIFVHWSAI-QMDG---FKTLRENESVEFEVQQGTK 55
Query: 170 DIEAINV 176
+A+NV
Sbjct: 56 GPQAVNV 62
>gi|167753531|ref|ZP_02425658.1| hypothetical protein ALIPUT_01806 [Alistipes putredinis DSM
17216]
gi|167658156|gb|EDS02286.1| cold-shock DNA-binding domain protein [Alistipes putredinis DSM
17216]
Length = 66
Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 46/68 (67%), Gaps = 5/68 (7%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+ G VK++DSK+G+GFITR D KE +FVH S IV + F++L G+ V F +G G K
Sbjct: 1 MTGQVKWFDSKKGYGFITREDGKE-VFVHFSGIVSDS----FKTLNEGQKVAFELGNGAK 55
Query: 69 DIEAINVT 76
+AINVT
Sbjct: 56 GEQAINVT 63
Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 46/68 (67%), Gaps = 5/68 (7%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+ G VK++DSK+G+GFITR D KE +FVH S IV + F++L G+ V F +G G K
Sbjct: 1 MTGQVKWFDSKKGYGFITREDGKE-VFVHFSGIVSDS----FKTLNEGQKVAFELGNGAK 55
Query: 170 DIEAINVT 177
+AINVT
Sbjct: 56 GEQAINVT 63
>gi|239628310|ref|ZP_04671341.1| cold-shock DNA-binding domain-containing protein [Clostridiales
bacterium 1_7_47_FAA]
gi|239518456|gb|EEQ58322.1| cold-shock DNA-binding domain-containing protein [Clostridiales
bacterium 1_7_47FAA]
Length = 67
Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 44/67 (65%), Gaps = 4/67 (5%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 69
+G VK+++S++GFGFIT +N EDIFVH S I F+SL G+ V F+I G +
Sbjct: 3 KGTVKWFNSQKGFGFITNEENGEDIFVHFSGI----ASNGFKSLEDGQSVTFDITNGNRG 58
Query: 70 IEAINVT 76
++A+NV
Sbjct: 59 LQAVNVC 65
Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 44/67 (65%), Gaps = 4/67 (5%)
Query: 111 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 170
+G VK+++S++GFGFIT +N EDIFVH S I F+SL G+ V F+I G +
Sbjct: 3 KGTVKWFNSQKGFGFITNEENGEDIFVHFSGI----ASNGFKSLEDGQSVTFDITNGNRG 58
Query: 171 IEAINVT 177
++A+NV
Sbjct: 59 LQAVNVC 65
>gi|356544794|ref|XP_003540832.1| PREDICTED: glycine-rich protein 2b-like [Glycine max]
Length = 200
Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI-GVGK 67
V G VK+++ ++GFGFI+ D +D+FVH+S I F+SL GE V+F I
Sbjct: 5 VSGKVKWFNDQKGFGFISPDDGSDDLFVHQSQI----KSDGFRSLAEGESVEFAIESESD 60
Query: 68 KDIEAINVTGPNGIPVQ 84
+A++VTGP+G VQ
Sbjct: 61 GRAKAVDVTGPDGASVQ 77
Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI-GVGK 168
V G VK+++ ++GFGFI+ D +D+FVH+S I F+SL GE V+F I
Sbjct: 5 VSGKVKWFNDQKGFGFISPDDGSDDLFVHQSQI----KSDGFRSLAEGESVEFAIESESD 60
Query: 169 KDIEAINVTGPNGIPVQ 185
+A++VTGP+G VQ
Sbjct: 61 GRAKAVDVTGPDGASVQ 77
>gi|355681871|ref|ZP_09062159.1| cold shock-like protein cspLA [Clostridium citroniae WAL-17108]
gi|354811282|gb|EHE95915.1| cold shock-like protein cspLA [Clostridium citroniae WAL-17108]
Length = 67
Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 4/69 (5%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 69
+G VK+++S++GFGFIT +N EDIFVH S I F+SL G V F+I G +
Sbjct: 3 KGTVKWFNSQKGFGFITNAENGEDIFVHFSGI----ASDGFKSLEDGASVTFDITNGNRG 58
Query: 70 IEAINVTGP 78
++A+NV
Sbjct: 59 LQAVNVCAA 67
Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 4/69 (5%)
Query: 111 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 170
+G VK+++S++GFGFIT +N EDIFVH S I F+SL G V F+I G +
Sbjct: 3 KGTVKWFNSQKGFGFITNAENGEDIFVHFSGI----ASDGFKSLEDGASVTFDITNGNRG 58
Query: 171 IEAINVTGP 179
++A+NV
Sbjct: 59 LQAVNVCAA 67
>gi|160938586|ref|ZP_02085938.1| hypothetical protein CLOBOL_03481 [Clostridium bolteae ATCC
BAA-613]
gi|158438285|gb|EDP16044.1| hypothetical protein CLOBOL_03481 [Clostridium bolteae ATCC
BAA-613]
Length = 67
Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 44/69 (63%), Gaps = 4/69 (5%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 69
+G VK+++S++GFGFIT +N EDIFVH S I F+SL G+ V F+I G +
Sbjct: 3 KGTVKWFNSQKGFGFITNEENGEDIFVHFSGI----ATDGFKSLEDGQSVTFDITNGNRG 58
Query: 70 IEAINVTGP 78
++A+NV
Sbjct: 59 LQAVNVCAA 67
Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 44/69 (63%), Gaps = 4/69 (5%)
Query: 111 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 170
+G VK+++S++GFGFIT +N EDIFVH S I F+SL G+ V F+I G +
Sbjct: 3 KGTVKWFNSQKGFGFITNEENGEDIFVHFSGI----ATDGFKSLEDGQSVTFDITNGNRG 58
Query: 171 IEAINVTGP 179
++A+NV
Sbjct: 59 LQAVNVCAA 67
>gi|313236956|emb|CBY12203.1| unnamed protein product [Oikopleura dioica]
Length = 270
Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 107 VHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQS-LGLGEIVDFNIG 165
V G VK+++ RGFGFI R D D+F+H+S +V + F L GE V+F++
Sbjct: 82 TRNVAGTVKWFNISRGFGFIERNDGGADVFLHQSGVVGSGRRHRFSLFLKGGEEVEFDVA 141
Query: 166 VGKKDIEAINVTGPNG 181
G K EA+ VT P G
Sbjct: 142 QGAKGPEAVAVTSPGG 157
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 6 IHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQS-LGLGEIVDFNIG 64
V G VK+++ RGFGFI R D D+F+H+S +V + F L GE V+F++
Sbjct: 82 TRNVAGTVKWFNISRGFGFIERNDGGADVFLHQSGVVGSGRRHRFSLFLKGGEEVEFDVA 141
Query: 65 VGKKDIEAINVTGPNG 80
G K EA+ VT P G
Sbjct: 142 QGAKGPEAVAVTSPGG 157
>gi|395786270|ref|ZP_10465997.1| hypothetical protein ME5_01315 [Bartonella tamiae Th239]
gi|423716837|ref|ZP_17691027.1| hypothetical protein MEG_00567 [Bartonella tamiae Th307]
gi|395422568|gb|EJF88764.1| hypothetical protein ME5_01315 [Bartonella tamiae Th239]
gi|395428911|gb|EJF94986.1| hypothetical protein MEG_00567 [Bartonella tamiae Th307]
Length = 197
Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 84/177 (47%), Gaps = 31/177 (17%)
Query: 9 VRGIVKFYDSKRGFGFIT-RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGK 67
V G +K++D +G+GFI + N DI +H I M F +L IV F + G+
Sbjct: 32 VSGAIKWFDVSKGYGFIVPDIANLGDILLH---ITVMRKDGFQTALEGARIVCF-VKNGE 87
Query: 68 KDIEAINVTG--------PNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDS 119
+ +++I V P+ IP + ++E SG R IVK+++
Sbjct: 88 RGLQSIKVKSIDLSTAIHPSQIPAKTHVVVTAE--SGLER------------AIVKWFNR 133
Query: 120 KRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINV 176
++GFGF+TR + +DIF+H ++ + L G++V G G+K I A +
Sbjct: 134 EKGFGFLTRGEGTDDIFIHMETLRRFG----LADLRPGQVVLVRYGHGEKGIMAAEI 186
>gi|313221374|emb|CBY32128.1| unnamed protein product [Oikopleura dioica]
gi|313241319|emb|CBY33595.1| unnamed protein product [Oikopleura dioica]
Length = 270
Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 107 VHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQS-LGLGEIVDFNIG 165
V G VK+++ RGFGFI R D D+F+H+S +V + F L GE V+F++
Sbjct: 82 TRNVTGTVKWFNISRGFGFIERNDGGADVFLHQSGVVGSGRRHRFSLFLKGGEEVEFDVA 141
Query: 166 VGKKDIEAINVTGPNG 181
G K EA+ VT P G
Sbjct: 142 QGAKGPEAVAVTSPGG 157
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 6 IHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQS-LGLGEIVDFNIG 64
V G VK+++ RGFGFI R D D+F+H+S +V + F L GE V+F++
Sbjct: 82 TRNVTGTVKWFNISRGFGFIERNDGGADVFLHQSGVVGSGRRHRFSLFLKGGEEVEFDVA 141
Query: 65 VGKKDIEAINVTGPNG 80
G K EA+ VT P G
Sbjct: 142 QGAKGPEAVAVTSPGG 157
>gi|225387921|ref|ZP_03757685.1| hypothetical protein CLOSTASPAR_01691 [Clostridium asparagiforme
DSM 15981]
gi|225045964|gb|EEG56210.1| hypothetical protein CLOSTASPAR_01691 [Clostridium asparagiforme
DSM 15981]
Length = 86
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 44/67 (65%), Gaps = 4/67 (5%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 69
+G VK+++S++GFGFIT +N EDIFVH S I F+SL G+ V F+I G +
Sbjct: 22 KGTVKWFNSQKGFGFITNSENGEDIFVHYSGIASNG----FKSLEDGQSVTFDITNGNRG 77
Query: 70 IEAINVT 76
++A+NV
Sbjct: 78 LQAVNVC 84
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 44/67 (65%), Gaps = 4/67 (5%)
Query: 111 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 170
+G VK+++S++GFGFIT +N EDIFVH S I F+SL G+ V F+I G +
Sbjct: 22 KGTVKWFNSQKGFGFITNSENGEDIFVHYSGIASNG----FKSLEDGQSVTFDITNGNRG 77
Query: 171 IEAINVT 177
++A+NV
Sbjct: 78 LQAVNVC 84
>gi|395782848|ref|ZP_10463219.1| hypothetical protein MCY_01616 [Bartonella rattimassiliensis 15908]
gi|395416457|gb|EJF82832.1| hypothetical protein MCY_01616 [Bartonella rattimassiliensis 15908]
Length = 240
Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 83/192 (43%), Gaps = 39/192 (20%)
Query: 5 EIHTVRGIVKFYDSKRGFGFIT-RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
EI + G++K++D +G+GFI L + DI +H V + + FQ+ G V +
Sbjct: 71 EIIEISGVIKWFDGSKGYGFIVPDLPHFPDILLH----VTVMRRDGFQTALEGAKVVCAV 126
Query: 64 --------GVGKKDIEAINVTGPNGIPVQG----APKSSSETVSGTYRNDSFFPAVHTVR 111
V K I+ + P+ +P + P+S E R
Sbjct: 127 EKTERGLKCVQVKSIDCSSAVHPSEVPARTHVVVTPESGLE------------------R 168
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 171
IVK+++ +GFGF++R EDIF+H ++ + L G++V G GKK +
Sbjct: 169 AIVKWFNRDKGFGFLSRGQGTEDIFIHMETLRRFG----LAELRSGQVVLVRFGKGKKGL 224
Query: 172 EAINVTGPNGIP 183
+ GIP
Sbjct: 225 MTAEIYPDIGIP 236
>gi|268574654|ref|XP_002642306.1| C. briggsae CBR-CEY-4 protein [Caenorhabditis briggsae]
Length = 286
Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 52/82 (63%), Gaps = 4/82 (4%)
Query: 9 VRGIVKFYDSKRGFGFITR---LDNKEDIFVHKSSIVKMNPKKFF-QSLGLGEIVDFNIG 64
V+G VK++ + +GF+ R D ED FVH+++I K + K++ ++L E V F+I
Sbjct: 89 VKGYVKWFSVRGRYGFVAREKAADETEDFFVHQTAISKSSTIKYYLRTLEEDEPVVFDIV 148
Query: 65 VGKKDIEAINVTGPNGIPVQGA 86
G+K EA NVTGP+G V+G+
Sbjct: 149 EGRKGPEAANVTGPDGENVRGS 170
Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 52/82 (63%), Gaps = 4/82 (4%)
Query: 110 VRGIVKFYDSKRGFGFITR---LDNKEDIFVHKSSIVKMNPKKFF-QSLGLGEIVDFNIG 165
V+G VK++ + +GF+ R D ED FVH+++I K + K++ ++L E V F+I
Sbjct: 89 VKGYVKWFSVRGRYGFVAREKAADETEDFFVHQTAISKSSTIKYYLRTLEEDEPVVFDIV 148
Query: 166 VGKKDIEAINVTGPNGIPVQGA 187
G+K EA NVTGP+G V+G+
Sbjct: 149 EGRKGPEAANVTGPDGENVRGS 170
>gi|319404271|emb|CBI77864.1| cold shock protein [Bartonella rochalimae ATCC BAA-1498]
Length = 193
Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 85/192 (44%), Gaps = 39/192 (20%)
Query: 5 EIHTVRGIVKFYDSKRGFGFIT-RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
EI + G++K++D +G+GFI L DI +H V + + FQ+ G V +
Sbjct: 24 EIIEISGVIKWFDGSKGYGFIIPDLPGLPDILLH----VTVMRRDGFQTALEGAKVICVV 79
Query: 64 GVGKKDIEAINV--------TGPNGIPVQG----APKSSSETVSGTYRNDSFFPAVHTVR 111
++ ++ I V T P+ IPV+ P+S E R
Sbjct: 80 KQTERGLKCIQVKSIDCSSATHPSEIPVRTHVVVTPESGLE------------------R 121
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 171
IVK+++ ++GFGF++R EDIF+H ++ + L G++V G G+K +
Sbjct: 122 AIVKWFNREKGFGFLSRGQGTEDIFIHMETLRRFG----LAELRSGQVVLVRFGKGEKGL 177
Query: 172 EAINVTGPNGIP 183
+ +P
Sbjct: 178 MTAEIYPDIALP 189
>gi|168015213|ref|XP_001760145.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162688525|gb|EDQ74901.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 187
Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 49/77 (63%), Gaps = 5/77 (6%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD- 69
G VK+++S +GFGFIT +D+FVH++SI + F+SL GE+V+F + +
Sbjct: 16 GKVKWFNSSKGFGFITPDKGGDDLFVHQTSI----HAEGFRSLREGEVVEFQVESSEDGR 71
Query: 70 IEAINVTGPNGIPVQGA 86
+A+ VTGP G VQGA
Sbjct: 72 TKALAVTGPGGAFVQGA 88
Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 49/77 (63%), Gaps = 5/77 (6%)
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD- 170
G VK+++S +GFGFIT +D+FVH++SI + F+SL GE+V+F + +
Sbjct: 16 GKVKWFNSSKGFGFITPDKGGDDLFVHQTSI----HAEGFRSLREGEVVEFQVESSEDGR 71
Query: 171 IEAINVTGPNGIPVQGA 187
+A+ VTGP G VQGA
Sbjct: 72 TKALAVTGPGGAFVQGA 88
>gi|431893989|gb|ELK03795.1| Y-box-binding protein 2 [Pteropus alecto]
Length = 649
Score = 55.8 bits (133), Expect = 9e-06, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 39/53 (73%)
Query: 139 KSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGAPKVP 191
+++I + NP+KF +S+G GE V+F++ G+K EA NVTGP G+PV+G+ P
Sbjct: 36 RTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVKGSRYAP 88
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/49 (48%), Positives = 38/49 (77%)
Query: 38 KSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGA 86
+++I + NP+KF +S+G GE V+F++ G+K EA NVTGP G+PV+G+
Sbjct: 36 RTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVKGS 84
>gi|222099783|ref|YP_002534351.1| Cold-shock DNA-binding protein family [Thermotoga neapolitana DSM
4359]
gi|221572173|gb|ACM22985.1| Cold-shock DNA-binding protein family [Thermotoga neapolitana DSM
4359]
Length = 78
Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 49/67 (73%), Gaps = 5/67 (7%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+RG VK++DSK+G+GFIT ++N EDIFVH S+I +M+ F++L E V+F++ G K
Sbjct: 13 MRGTVKWFDSKKGYGFIT-MENGEDIFVHWSAI-QMDG---FKTLRENEPVEFDVQQGTK 67
Query: 69 DIEAINV 75
+A+NV
Sbjct: 68 GPQAVNV 74
Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 49/67 (73%), Gaps = 5/67 (7%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+RG VK++DSK+G+GFIT ++N EDIFVH S+I +M+ F++L E V+F++ G K
Sbjct: 13 MRGTVKWFDSKKGYGFIT-MENGEDIFVHWSAI-QMDG---FKTLRENEPVEFDVQQGTK 67
Query: 170 DIEAINV 176
+A+NV
Sbjct: 68 GPQAVNV 74
>gi|429208641|ref|ZP_19199888.1| Cold shock protein CspB [Rhodobacter sp. AKP1]
gi|428188404|gb|EKX56969.1| Cold shock protein CspB [Rhodobacter sp. AKP1]
Length = 170
Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 72/168 (42%), Gaps = 12/168 (7%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+ G VK++D +GFGFI +N DI +H + + G+ V + G +
Sbjct: 1 MHGRVKWFDPAKGFGFIVTEENGADILLHANVLRNYGQSSVADGAGITVKVQ-STQRGVQ 59
Query: 69 DIEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFITR 128
+E I + P G + S + T A G VK++D +GFGF
Sbjct: 60 AVEVIEIEPPEGTTFHLSEDSEATT-------PEEIAARPLEPGRVKWFDKGKGFGFANV 112
Query: 129 LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINV 176
ED+F+H +++M+ F L GE V I G++ A+ V
Sbjct: 113 FGRPEDVFIH-VEVLRMSG---FADLAAGEAVALRIIEGRRGRMAVQV 156
>gi|222148686|ref|YP_002549643.1| cold shock protein [Agrobacterium vitis S4]
gi|221735672|gb|ACM36635.1| cold shock protein [Agrobacterium vitis S4]
Length = 192
Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 81/188 (43%), Gaps = 39/188 (20%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+ G+VK++D +GFGFI + +D+ +H + + + +Q++ G + I +
Sbjct: 26 ITGVVKWFDVAKGFGFIVPDNGMQDVLLHVTCLRRDG----YQTILEGTRIVALIHKRDR 81
Query: 69 DIEAINV--------TGPNGIP-----VQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVK 115
+A V T P+ +P VQ P S E V +VK
Sbjct: 82 GYQAFRVLSMDQSTATHPSQMPPVRTHVQVTPSSGLERV------------------LVK 123
Query: 116 FYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAIN 175
+++ +GFGF+TR + EDIFVH ++ + L G+ V G G K + A
Sbjct: 124 WFNRTKGFGFLTRGEGTEDIFVHMETLRRFG----LTELRPGQTVLVRFGNGDKGLMAAE 179
Query: 176 VTGPNGIP 183
+ N P
Sbjct: 180 IHPDNPAP 187
>gi|308153249|ref|NP_001015806.2| protein lin-28 homolog A isoform 1 [Xenopus (Silurana) tropicalis]
Length = 188
Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 56/114 (49%), Gaps = 14/114 (12%)
Query: 85 GAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFITR-------LDNKEDIFV 137
G PKS ET ++S + G+ K+++ + GFGF+T L+ D+FV
Sbjct: 5 GLPKSLDETADIHKSDESL---IFQGSGVCKWFNVRMGFGFLTMTKKEGTDLETPVDVFV 61
Query: 138 HKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGAPKVP 191
H+S + F+SL GE V+F K +E+ VTGP G P G+ + P
Sbjct: 62 HQSKLHMEG----FRSLKEGESVEFTFKKSSKGLESTRVTGPGGAPCIGSERRP 111
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 11/85 (12%)
Query: 11 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
G+ K+++ + GFGF+T L+ D+FVH+S + F+SL GE V+F
Sbjct: 29 GVCKWFNVRMGFGFLTMTKKEGTDLETPVDVFVHQSKLHMEG----FRSLKEGESVEFTF 84
Query: 64 GVGKKDIEAINVTGPNGIPVQGAPK 88
K +E+ VTGP G P G+ +
Sbjct: 85 KKSSKGLESTRVTGPGGAPCIGSER 109
>gi|451941958|ref|YP_007462595.1| cold shock protein [Bartonella vinsonii subsp. berkhoffii str.
Winnie]
gi|451901345|gb|AGF75807.1| cold shock protein [Bartonella vinsonii subsp. berkhoffii str.
Winnie]
Length = 191
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 83/192 (43%), Gaps = 39/192 (20%)
Query: 5 EIHTVRGIVKFYDSKRGFGFIT-RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
EI + G++K++D +G+GFI L + DI +H V + + FQ+ G V +
Sbjct: 22 EIIEISGVIKWFDGSKGYGFIVPDLPHFSDILLH----VTVMRRDGFQTALEGAKVICAV 77
Query: 64 --------GVGKKDIEAINVTGPNGIPVQG----APKSSSETVSGTYRNDSFFPAVHTVR 111
V K I+ + P+ IP + P+S E R
Sbjct: 78 EKTERGLKCVQVKSIDCSSAIHPSEIPARTHVVVTPESGLE------------------R 119
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 171
IVK+++ +GFGF++R EDIF+H ++ + L G++V G G+K +
Sbjct: 120 AIVKWFNRDKGFGFLSRGQGTEDIFIHMETLRRFG----LAELRSGQVVLVRFGKGEKGL 175
Query: 172 EAINVTGPNGIP 183
+ GIP
Sbjct: 176 MTAEIYPDIGIP 187
>gi|451940659|ref|YP_007461297.1| cold shock protein [Bartonella australis Aust/NH1]
gi|451900046|gb|AGF74509.1| cold shock protein [Bartonella australis Aust/NH1]
Length = 191
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 81/191 (42%), Gaps = 37/191 (19%)
Query: 5 EIHTVRGIVKFYDSKRGFGFIT-RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
E+ + G++K++D +G+GFI L D+ +H + M F +L IV
Sbjct: 22 EVIEISGVIKWFDGSKGYGFIAPDLLELPDVLLH---VTVMRRDGFQAALEGARIVCVVQ 78
Query: 64 -------GVGKKDIEAINVTGPNGIPVQG----APKSSSETVSGTYRNDSFFPAVHTVRG 112
V K I+ + P+ PV+ P+SS E R
Sbjct: 79 KTERGLKCVQVKSIDCSSALHPSETPVRTHVVVTPESSLE------------------RA 120
Query: 113 IVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIE 172
IVK+++ +GFGF++R EDIFVH ++ + L G++V G GKK +
Sbjct: 121 IVKWFNRDKGFGFLSRGQGTEDIFVHMETLRRFG----LAELRPGQVVIVRFGNGKKGLM 176
Query: 173 AINVTGPNGIP 183
A + +P
Sbjct: 177 AAEIYPDIALP 187
>gi|428185247|gb|EKX54100.1| hypothetical protein GUITHDRAFT_91776 [Guillardia theta CCMP2712]
Length = 111
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 56/93 (60%), Gaps = 4/93 (4%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+ G VK+++ K+G+GFIT + EDIFVH+++I + F+SL E V+F I
Sbjct: 4 ITGKVKWFNVKKGYGFITPTNGGEDIFVHQTAIH----AEGFRSLKEEEEVEFEISDNGG 59
Query: 69 DIEAINVTGPNGIPVQGAPKSSSETVSGTYRND 101
+AINVTGP G VQGAP+ + + + RN
Sbjct: 60 KSKAINVTGPAGAYVQGAPRHTKGSRNYRPRNQ 92
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 51/80 (63%), Gaps = 4/80 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+ G VK+++ K+G+GFIT + EDIFVH+++I + F+SL E V+F I
Sbjct: 4 ITGKVKWFNVKKGYGFITPTNGGEDIFVHQTAIH----AEGFRSLKEEEEVEFEISDNGG 59
Query: 170 DIEAINVTGPNGIPVQGAPK 189
+AINVTGP G VQGAP+
Sbjct: 60 KSKAINVTGPAGAYVQGAPR 79
>gi|395779915|ref|ZP_10460383.1| hypothetical protein MCW_00470 [Bartonella washoensis 085-0475]
gi|423712631|ref|ZP_17686931.1| hypothetical protein MCQ_01389 [Bartonella washoensis Sb944nv]
gi|395411424|gb|EJF77946.1| hypothetical protein MCQ_01389 [Bartonella washoensis Sb944nv]
gi|395419665|gb|EJF85961.1| hypothetical protein MCW_00470 [Bartonella washoensis 085-0475]
Length = 191
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 85/180 (47%), Gaps = 15/180 (8%)
Query: 5 EIHTVRGIVKFYDSKRGFGFIT-RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
EI + G++K++D +G+GFI L DI +H V + + FQ++ G + +
Sbjct: 22 EIIEISGVIKWFDGSKGYGFIVPDLPGFPDILLH----VTVMRRDGFQTILEGAKIVCAV 77
Query: 64 GVGKKDIEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGF 123
++ ++ + V + + SET + T+ + P R IVK+++ +GF
Sbjct: 78 EKTERGLKCVQVKSIDC----SSAIHPSETPARTHVVVT--PESGLERAIVKWFNRDKGF 131
Query: 124 GFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIP 183
GF++R + EDIFVH ++ + L G++V G G+K + + IP
Sbjct: 132 GFLSRGEGTEDIFVHMETLRRFG----LAELRSGQVVLVRFGKGEKGLMTAEIYPDIAIP 187
>gi|62858881|ref|NP_001016266.1| protein lin-28 homolog A isoform 2 [Xenopus (Silurana) tropicalis]
gi|82230981|sp|Q5EB47.1|LN28A_XENTR RecName: Full=Protein lin-28 homolog A; Short=Lin-28A
gi|59809410|gb|AAH90084.1| lin-28 homolog [Xenopus (Silurana) tropicalis]
gi|89266719|emb|CAJ82571.1| lin-28 homolog (C. elegans) [Xenopus (Silurana) tropicalis]
gi|195539672|gb|AAI68066.1| lin-28 homolog (C. elegans) [Xenopus (Silurana) tropicalis]
Length = 195
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 56/114 (49%), Gaps = 14/114 (12%)
Query: 85 GAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFITR-------LDNKEDIFV 137
G PKS ET ++S + G+ K+++ + GFGF+T L+ D+FV
Sbjct: 12 GLPKSLDETADIHKSDESL---IFQGSGVCKWFNVRMGFGFLTMTKKEGTDLETPVDVFV 68
Query: 138 HKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGAPKVP 191
H+S + F+SL GE V+F K +E+ VTGP G P G+ + P
Sbjct: 69 HQSKLHMEG----FRSLKEGESVEFTFKKSSKGLESTRVTGPGGAPCIGSERRP 118
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 11/85 (12%)
Query: 11 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
G+ K+++ + GFGF+T L+ D+FVH+S + F+SL GE V+F
Sbjct: 36 GVCKWFNVRMGFGFLTMTKKEGTDLETPVDVFVHQSKLHMEG----FRSLKEGESVEFTF 91
Query: 64 GVGKKDIEAINVTGPNGIPVQGAPK 88
K +E+ VTGP G P G+ +
Sbjct: 92 KKSSKGLESTRVTGPGGAPCIGSER 116
>gi|433775584|ref|YP_007306051.1| cold shock protein [Mesorhizobium australicum WSM2073]
gi|433667599|gb|AGB46675.1| cold shock protein [Mesorhizobium australicum WSM2073]
Length = 197
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 80/173 (46%), Gaps = 14/173 (8%)
Query: 5 EIHTVRGIVKFYDSKRGFGFITRLDN-KEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
++ + G +K++D +G+GFI D DI +H + + + FQ+ G V +
Sbjct: 27 DLAEIAGAIKWFDVAKGYGFILPDDGVSGDILLHVTCL----RRDGFQTALEGARVVCLV 82
Query: 64 GVGKKDIEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGF 123
G++ ++A V + + P E + + S P R +VK+++ +GF
Sbjct: 83 KQGERGLQAFRVLSMD-VTTAVHPAEMQEQRT----HVSVTPESGLERALVKWFNRTKGF 137
Query: 124 GFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINV 176
GF+TR + EDIFVH ++ + L G++V G G K + A +
Sbjct: 138 GFLTRGEGTEDIFVHMETLRRYG----ITELRPGQVVLVRFGRGDKGLMAAEI 186
>gi|432105588|gb|ELK31782.1| Y-box-binding protein 2 [Myotis davidii]
Length = 275
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 43/61 (70%), Gaps = 2/61 (3%)
Query: 28 LDNKEDIFVH--KSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQG 85
L ++ DI +++I + NP+KF +S+G GE V+F++ G+K EA NVTGP G+PV+G
Sbjct: 28 LSHQLDILSAAVETAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVKG 87
Query: 86 A 86
+
Sbjct: 88 S 88
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 43/61 (70%), Gaps = 2/61 (3%)
Query: 129 LDNKEDIFVH--KSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQG 186
L ++ DI +++I + NP+KF +S+G GE V+F++ G+K EA NVTGP G+PV+G
Sbjct: 28 LSHQLDILSAAVETAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVKG 87
Query: 187 A 187
+
Sbjct: 88 S 88
>gi|99080990|ref|YP_613144.1| cold-shock DNA-binding protein family protein [Ruegeria sp. TM1040]
gi|99037270|gb|ABF63882.1| cold-shock DNA-binding protein family [Ruegeria sp. TM1040]
Length = 179
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 79/174 (45%), Gaps = 18/174 (10%)
Query: 6 IHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGV 65
+ VRG+VK++D +G+GFI D+ DI +H + + G+ E+V
Sbjct: 8 LQHVRGLVKWFDPAKGYGFIVCPDDGPDILLHVNVLRNFGQSSVADGAGI-EVVTHRTDR 66
Query: 66 GKKDIEAINVTGP--NGIPV-QGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRG 122
G + +E +++T P PV + E +S T PA VK++D +G
Sbjct: 67 GVQAVEIVSITPPEREDTPVLSDLAQLDDEELSNT----PLEPAR------VKWFDKAKG 116
Query: 123 FGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINV 176
FGF ED+F+H V++ + + GE + + GK+ A++V
Sbjct: 117 FGFANVFGRDEDVFLH----VEVLRQSGLSDVQSGEALAMRVIDGKRGRMAVDV 166
>gi|356502875|ref|XP_003520240.1| PREDICTED: DNA-binding protein HEXBP-like [Glycine max]
Length = 252
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 49/75 (65%), Gaps = 5/75 (6%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD- 69
G+V+++++ +GFGFI D ED+FVH+SSI +++L G+ V+F I G D
Sbjct: 8 GVVQWFNNGKGFGFIKPDDGGEDLFVHQSSIRSDG----YRTLLEGDRVEFAIATGDNDK 63
Query: 70 IEAINVTGPNGIPVQ 84
+A++VTG +G P+Q
Sbjct: 64 TKAVDVTGVDGAPLQ 78
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 49/75 (65%), Gaps = 5/75 (6%)
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD- 170
G+V+++++ +GFGFI D ED+FVH+SSI +++L G+ V+F I G D
Sbjct: 8 GVVQWFNNGKGFGFIKPDDGGEDLFVHQSSIRSDG----YRTLLEGDRVEFAIATGDNDK 63
Query: 171 IEAINVTGPNGIPVQ 185
+A++VTG +G P+Q
Sbjct: 64 TKAVDVTGVDGAPLQ 78
>gi|395787777|ref|ZP_10467369.1| hypothetical protein ME7_00704 [Bartonella birtlesii LL-WM9]
gi|395410399|gb|EJF76954.1| hypothetical protein ME7_00704 [Bartonella birtlesii LL-WM9]
Length = 191
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 83/192 (43%), Gaps = 39/192 (20%)
Query: 5 EIHTVRGIVKFYDSKRGFGFIT-RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
EI + G++K++D +G+GFI L + DI +H V + + FQ+ G V +
Sbjct: 22 EIIEISGVIKWFDGSKGYGFIVPDLPHFPDILLH----VTVMRRDGFQTALEGAKVICAV 77
Query: 64 --------GVGKKDIEAINVTGPNGIPVQG----APKSSSETVSGTYRNDSFFPAVHTVR 111
V K I+ + P+ IP + P+S E R
Sbjct: 78 EKTERGLKCVQVKSIDCSSAIHPSEIPARTHVVVTPESGLE------------------R 119
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 171
IVK+++ +GFGF++R EDIF+H ++ + L G++V G G+K +
Sbjct: 120 AIVKWFNRDKGFGFLSRGQGTEDIFIHMETLRRFG----LAELRSGQVVLVRFGKGEKGL 175
Query: 172 EAINVTGPNGIP 183
+ GIP
Sbjct: 176 MTAEIYPDIGIP 187
>gi|149695055|ref|XP_001504139.1| PREDICTED: protein lin-28 homolog A [Equus caballus]
Length = 205
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 56/113 (49%), Gaps = 15/113 (13%)
Query: 86 APKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFIT-------RLDNKEDIFVH 138
AP+ S E +G P + GI K+++ + GFGF++ LD D+FVH
Sbjct: 16 APEESQEDAAGPAEE----PQLLHGAGICKWFNVRMGFGFLSMTARAGVALDPPVDVFVH 71
Query: 139 KSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGAPKVP 191
+S + F+SL GE V+F K +E+I VTGP G+ G+ + P
Sbjct: 72 QSKLHMEG----FRSLKEGEAVEFTFKKSAKGLESIRVTGPGGVFCIGSERRP 120
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 11/78 (14%)
Query: 11 GIVKFYDSKRGFGFIT-------RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
GI K+++ + GFGF++ LD D+FVH+S + F+SL GE V+F
Sbjct: 38 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEG----FRSLKEGEAVEFTF 93
Query: 64 GVGKKDIEAINVTGPNGI 81
K +E+I VTGP G+
Sbjct: 94 KKSAKGLESIRVTGPGGV 111
>gi|378825899|ref|YP_005188631.1| cold shock protein [Sinorhizobium fredii HH103]
gi|365178951|emb|CCE95806.1| cold shock protein [Sinorhizobium fredii HH103]
Length = 192
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 85/182 (46%), Gaps = 22/182 (12%)
Query: 4 FEIHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
++ + G++K++D +GFGFI + +D+ +H + + + +Q++ G V I
Sbjct: 21 LDLIEITGVIKWFDVAKGFGFIVPDNGMQDVLLHVTCL----RRDGYQTVLEGARVVALI 76
Query: 64 GVGKKDIEAINVTGPNGI----PVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDS 119
++ +A + + P Q P + V+ P R +VK+++
Sbjct: 77 QKRERGYQAFRILSMDQSTAVHPSQLPPVRTHVQVT---------PTSGLERVLVKWFNR 127
Query: 120 KRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGP 179
+GFGF+TR + EDIFVH ++ + L G++V G G+K + A + P
Sbjct: 128 TKGFGFLTRGEGTEDIFVHMETLRRFG----LTELRPGQVVLCRFGDGEKGLMAAEIH-P 182
Query: 180 NG 181
+G
Sbjct: 183 DG 184
>gi|114570048|ref|YP_756728.1| cold-shock DNA-binding protein family protein [Maricaulis maris
MCS10]
gi|114340510|gb|ABI65790.1| cold-shock DNA-binding protein family [Maricaulis maris MCS10]
Length = 174
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 74/145 (51%), Gaps = 21/145 (14%)
Query: 5 EIHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGL--GEIVDFN 62
E+ + G VK+YD RG+GFI D + DI +H S + ++F Q L +IV
Sbjct: 12 EMLELEGRVKWYDPARGYGFIDASDGEGDILLHASCL-----RRFGQGPALPNAKIVCKA 66
Query: 63 I--GVGKKDIEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSK 120
+ G++ +E + +TG + + P+ N F AV VK++D+
Sbjct: 67 VQGDKGRQAVELVEMTGGDN-EAEARPRRFHPY---AVVNAPFSDAV------VKWFDAL 116
Query: 121 RGFGFITRLDNKE-DIFVHKSSIVK 144
RG+GF+T DN E D+F+H +++ +
Sbjct: 117 RGYGFVT-CDNVEGDVFLHAATLRR 140
>gi|227821970|ref|YP_002825941.1| cold shock protein [Sinorhizobium fredii NGR234]
gi|227340970|gb|ACP25188.1| cold shock protein [Sinorhizobium fredii NGR234]
Length = 192
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 85/182 (46%), Gaps = 22/182 (12%)
Query: 4 FEIHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
++ + G++K++D +GFGFI + +D+ +H + + + +Q++ G V I
Sbjct: 21 LDLVEITGVIKWFDVAKGFGFIVPDNGMQDVLLHVTCL----RRDGYQTVLEGARVVALI 76
Query: 64 GVGKKDIEAINVTGPNGI----PVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDS 119
++ +A + + P Q P + V+ P R +VK+++
Sbjct: 77 QKRERGYQAFRILSMDQSTAVHPSQLPPVRTHVQVT---------PTSGLERVLVKWFNR 127
Query: 120 KRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGP 179
+GFGF+TR + EDIFVH ++ + L G++V G G+K + A + P
Sbjct: 128 TKGFGFLTRGEGTEDIFVHMETLRRFG----LTELRPGQVVLCRFGDGEKGLMAAEIH-P 182
Query: 180 NG 181
+G
Sbjct: 183 DG 184
>gi|319407276|emb|CBI80917.1| cold shock protein [Bartonella sp. 1-1C]
Length = 191
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 85/192 (44%), Gaps = 39/192 (20%)
Query: 5 EIHTVRGIVKFYDSKRGFGFIT-RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
EI + G++K++D +G+GFI L + DI +H V + + FQ+ G V +
Sbjct: 22 EIIEISGVIKWFDGSKGYGFIIPDLPSLPDILLH----VTVMRRDGFQTALEGAKVICVV 77
Query: 64 GVGKKDIEAINV--------TGPNGIPVQG----APKSSSETVSGTYRNDSFFPAVHTVR 111
++ ++ I V T P IPV+ P+S E R
Sbjct: 78 KQTERGLKCIQVKSIDCSSATHPLEIPVRTHVVVTPESGLE------------------R 119
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 171
IVK+++ ++GFGF++R EDIF+H ++ + L G++V G G+K +
Sbjct: 120 AIVKWFNREKGFGFLSRGQGTEDIFIHMETLRRFG----LAELRSGQVVLVRFGKGEKGL 175
Query: 172 EAINVTGPNGIP 183
+ +P
Sbjct: 176 MTAEIYPDIALP 187
>gi|337269174|ref|YP_004613229.1| cold-shock DNA-binding domain-containing protein [Mesorhizobium
opportunistum WSM2075]
gi|336029484|gb|AEH89135.1| cold-shock DNA-binding domain protein [Mesorhizobium opportunistum
WSM2075]
Length = 198
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 14/169 (8%)
Query: 9 VRGIVKFYDSKRGFGFITRLDN-KEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGK 67
+ G +K++D +G+GFI D DI +H + + + FQ+ G V + G+
Sbjct: 32 IAGAIKWFDVAKGYGFILPDDGISGDILLHVTCL----RRDGFQTALEGARVVCLVKQGE 87
Query: 68 KDIEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFIT 127
+ ++A V + + P E + + S P R +VK+++ +GFGF+T
Sbjct: 88 RGLQAFRVLSMD-VTTAVHPAEMQEQRT----HVSVTPESGLERALVKWFNRTKGFGFLT 142
Query: 128 RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINV 176
R + EDIFVH ++ + L G++V G G K + A +
Sbjct: 143 RGEGTEDIFVHMETLRRYG----ITELRPGQVVLVRFGRGDKGLMAAEI 187
>gi|403289674|ref|XP_003935970.1| PREDICTED: protein lin-28 homolog B [Saimiri boliviensis
boliviensis]
Length = 250
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 13/88 (14%)
Query: 112 GIVKFYDSKRGFGFITRLDNKE--------DIFVHKSSIVKMNPKKFFQSLGLGEIVDFN 163
G K+++ + GFGFI+ + N+E D+FVH+S + F+SL GE V+F
Sbjct: 32 GHCKWFNVRMGFGFISMI-NREGSPLDIPVDVFVHQSKLFMEG----FRSLKEGEPVEFT 86
Query: 164 IGVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP GIP G+ + P
Sbjct: 87 FKKSSKGLESIRVTGPGGIPCSGSERRP 114
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 13/84 (15%)
Query: 11 GIVKFYDSKRGFGFITRLDNKE--------DIFVHKSSIVKMNPKKFFQSLGLGEIVDFN 62
G K+++ + GFGFI+ + N+E D+FVH+S + F+SL GE V+F
Sbjct: 32 GHCKWFNVRMGFGFISMI-NREGSPLDIPVDVFVHQSKLFMEG----FRSLKEGEPVEFT 86
Query: 63 IGVGKKDIEAINVTGPNGIPVQGA 86
K +E+I VTGP GIP G+
Sbjct: 87 FKKSSKGLESIRVTGPGGIPCSGS 110
>gi|404404320|ref|ZP_10995904.1| cold shock protein [Alistipes sp. JC136]
Length = 66
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 45/67 (67%), Gaps = 5/67 (7%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+ G VK++D K+G+GFIT +N ++IFVH S IVK F+SL G+ V+F IG G K
Sbjct: 1 MTGKVKWFDGKKGYGFITA-ENGKEIFVHFSGIVKDG----FKSLNEGQAVEFEIGTGAK 55
Query: 69 DIEAINV 75
+AINV
Sbjct: 56 GEQAINV 62
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 45/67 (67%), Gaps = 5/67 (7%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+ G VK++D K+G+GFIT +N ++IFVH S IVK F+SL G+ V+F IG G K
Sbjct: 1 MTGKVKWFDGKKGYGFITA-ENGKEIFVHFSGIVKDG----FKSLNEGQAVEFEIGTGAK 55
Query: 170 DIEAINV 176
+AINV
Sbjct: 56 GEQAINV 62
>gi|17555742|ref|NP_499393.1| Protein CEY-4 [Caenorhabditis elegans]
gi|3880813|emb|CAA19509.1| Protein CEY-4 [Caenorhabditis elegans]
Length = 294
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 51/82 (62%), Gaps = 4/82 (4%)
Query: 9 VRGIVKFYDSKRGFGFITR---LDNKEDIFVHKSSIVKMNPKKFF-QSLGLGEIVDFNIG 64
V+G VK++ + +GF+ R D ED FVH+++I K + KF+ ++L E V F+I
Sbjct: 89 VKGHVKWFSVRGRYGFVARDKPTDENEDFFVHQTAITKSSTIKFYLRTLDDDEPVVFDIV 148
Query: 65 VGKKDIEAINVTGPNGIPVQGA 86
G K EA NVTGP+G V+G+
Sbjct: 149 EGLKGPEAANVTGPDGENVRGS 170
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 51/82 (62%), Gaps = 4/82 (4%)
Query: 110 VRGIVKFYDSKRGFGFITR---LDNKEDIFVHKSSIVKMNPKKFF-QSLGLGEIVDFNIG 165
V+G VK++ + +GF+ R D ED FVH+++I K + KF+ ++L E V F+I
Sbjct: 89 VKGHVKWFSVRGRYGFVARDKPTDENEDFFVHQTAITKSSTIKFYLRTLDDDEPVVFDIV 148
Query: 166 VGKKDIEAINVTGPNGIPVQGA 187
G K EA NVTGP+G V+G+
Sbjct: 149 EGLKGPEAANVTGPDGENVRGS 170
>gi|310815595|ref|YP_003963559.1| cold-shock DNA-binding protein [Ketogulonicigenium vulgare Y25]
gi|308754330|gb|ADO42259.1| 'Cold-shock' DNA-binding domain protein [Ketogulonicigenium vulgare
Y25]
Length = 176
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 76/168 (45%), Gaps = 17/168 (10%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 70
G VK+YD+ +GFGFI + DI +H + + + S+G G + + K
Sbjct: 14 GHVKWYDATKGFGFIVDPQGRSDILLHANVLRRFG----LNSVGEGIEITVLVSRTPKGA 69
Query: 71 EAINV--TGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFITR 128
+AI + G NG P G + E +S A+ V VK +D RGFGF
Sbjct: 70 QAIEILAVGDNGRP--GTGLTDLEGLSAEE-----IRALPVVPARVKRFDRTRGFGFANV 122
Query: 129 LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINV 176
+ +D+F+H +++ + F L GE + + GK+ A+ V
Sbjct: 123 FGSADDVFIH----IEVMREGGFSDLRQGEAICLRLIAGKRGPMAVAV 166
>gi|291513784|emb|CBK62994.1| cold-shock DNA-binding protein family [Alistipes shahii WAL 8301]
Length = 66
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 45/68 (66%), Gaps = 5/68 (7%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+ G VK++D K+G+GFIT +N ++IFVH S I K F+SL G+ V+F +G G K
Sbjct: 1 MTGKVKWFDGKKGYGFIT-AENGKEIFVHFSGIAKDG----FKSLNEGQAVEFEVGSGAK 55
Query: 69 DIEAINVT 76
+AINVT
Sbjct: 56 GEQAINVT 63
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 45/68 (66%), Gaps = 5/68 (7%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+ G VK++D K+G+GFIT +N ++IFVH S I K F+SL G+ V+F +G G K
Sbjct: 1 MTGKVKWFDGKKGYGFIT-AENGKEIFVHFSGIAKDG----FKSLNEGQAVEFEVGSGAK 55
Query: 170 DIEAINVT 177
+AINVT
Sbjct: 56 GEQAINVT 63
>gi|374575410|ref|ZP_09648506.1| cold shock protein [Bradyrhizobium sp. WSM471]
gi|374423731|gb|EHR03264.1| cold shock protein [Bradyrhizobium sp. WSM471]
Length = 218
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 77/180 (42%), Gaps = 21/180 (11%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G++K++D+ +G+GFI + D+ +H V + + FQ+ G + K
Sbjct: 53 VHGVIKWFDASKGYGFIVPDNGWPDVLLH----VTVLRRDGFQTAYEGARIVVECIQRAK 108
Query: 69 DIEAINVTGPNGI----PVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFG 124
+A V + P Q P + TV+ T + R VK+++ RGFG
Sbjct: 109 GYQAFRVVSMDESTAIHPAQMLPPRTHVTVTATSGLE---------RAQVKWFNRLRGFG 159
Query: 125 FITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPV 184
F+T + DIFVH ++ + L G+ V G G K + A + G PV
Sbjct: 160 FLTCGEGTPDIFVHMETLRRFG----MTELRPGQYVLVRFGPGSKGMMAAEIHPETGSPV 215
>gi|89068841|ref|ZP_01156224.1| cold shock DNA-binding domain protein [Oceanicola granulosus
HTCC2516]
gi|89045611|gb|EAR51674.1| cold shock DNA-binding domain protein [Oceanicola granulosus
HTCC2516]
Length = 171
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 79/174 (45%), Gaps = 20/174 (11%)
Query: 8 TVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSL---GLGEIVDF-NI 63
TV G VK++D +GFGFI D DI +H + + + F QS G G +V+ +
Sbjct: 2 TVTGTVKWFDPAKGFGFIVAEDGGPDILLHANVL-----RNFGQSSVADGSGIVVEVQDT 56
Query: 64 GVGKKDIEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGF 123
GK+ + + +T P +P +E T + PA VK++D +GF
Sbjct: 57 PRGKQAVAVVELTPPE-LPRVSQFGDLAEIDPETLASTPLSPAR------VKWFDKGKGF 109
Query: 124 GFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVT 177
GF ED+FVH +++ + L GE + + GK+ A+ V+
Sbjct: 110 GFANVFGLAEDVFVH----IEVLRRSGLSDLQPGEAISLRVMDGKRGKMAMEVS 159
>gi|391340776|ref|XP_003744712.1| PREDICTED: protein lin-28 homolog [Metaseiulus occidentalis]
Length = 223
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
Query: 111 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 170
RG K+++ +G+GFI+ LD D+FVH+ S+++M F+SLG E V+F V K
Sbjct: 52 RGRCKWFNVAKGWGFISPLDEGPDVFVHQ-SVIQM---PGFRSLGDDEEVEFECKVSDKG 107
Query: 171 IEAINVTGPNGIPVQGAPKVP 191
EA V GP +G+ + P
Sbjct: 108 FEATLVCGPGTGDCKGSHRRP 128
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 4/77 (5%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 69
RG K+++ +G+GFI+ LD D+FVH+ S+++M F+SLG E V+F V K
Sbjct: 52 RGRCKWFNVAKGWGFISPLDEGPDVFVHQ-SVIQM---PGFRSLGDDEEVEFECKVSDKG 107
Query: 70 IEAINVTGPNGIPVQGA 86
EA V GP +G+
Sbjct: 108 FEATLVCGPGTGDCKGS 124
>gi|385233112|ref|YP_005794454.1| cold shock DNA-binding domain-containing protein
[Ketogulonicigenium vulgare WSH-001]
gi|343462023|gb|AEM40458.1| Cold shock DNA-binding domain protein [Ketogulonicigenium vulgare
WSH-001]
Length = 165
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 80/177 (45%), Gaps = 18/177 (10%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 70
G VK+YD+ +GFGFI + DI +H + + + S+G G + + K
Sbjct: 3 GHVKWYDATKGFGFIVDPQGRSDILLHANVLRRFG----LNSVGEGIEITVLVSRTPKGA 58
Query: 71 EAINV--TGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFITR 128
+AI + G NG P G + E +S A+ V VK +D RGFGF
Sbjct: 59 QAIEILAVGDNGRP--GTGLTDLEGLSAEE-----IRALPVVPARVKRFDRTRGFGFANV 111
Query: 129 LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVT-GPNGIPV 184
+ +D+F+H +++ + F L GE + + GK+ A+ V G+P+
Sbjct: 112 FGSADDVFIH----IEVMREGGFSDLRQGEAICLRLIAGKRGPMAVAVMPWEAGLPL 164
>gi|357024456|ref|ZP_09086608.1| cold-shock DNA-binding domain-containing protein [Mesorhizobium
amorphae CCNWGS0123]
gi|355543688|gb|EHH12812.1| cold-shock DNA-binding domain-containing protein [Mesorhizobium
amorphae CCNWGS0123]
Length = 198
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 79/173 (45%), Gaps = 22/173 (12%)
Query: 9 VRGIVKFYDSKRGFGFITRLDN-KEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGK 67
+ G +K++D +G+GFI D DI +H + + K FQ+ G V + G+
Sbjct: 32 IAGAIKWFDVAKGYGFILPDDGVSGDILLHVTCL----RKDGFQTALEGARVVCLVKQGE 87
Query: 68 KDIEAINVTGPNGI----PVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGF 123
+ ++A V + P + + + TV+ P R +VK+++ +GF
Sbjct: 88 RGLQAFRVLSMDASTAVHPAEMQEQRTHITVT---------PESGLERALVKWFNRTKGF 138
Query: 124 GFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINV 176
GF+TR + EDIFVH ++ + L G++V G G K + A +
Sbjct: 139 GFLTRGEGTEDIFVHMETLRRYG----ITELRPGQVVLVRFGRGDKGLMAAEI 187
>gi|398819636|ref|ZP_10578185.1| cold shock protein [Bradyrhizobium sp. YR681]
gi|398229570|gb|EJN15643.1| cold shock protein [Bradyrhizobium sp. YR681]
Length = 227
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 76/180 (42%), Gaps = 21/180 (11%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G++K++D+ +G+GFI + D+ +H V + + FQ+ G + K
Sbjct: 62 VHGVIKWFDASKGYGFIVPDNGWPDVLLH----VTVLRRDGFQTAYEGARIVVECIQRAK 117
Query: 69 DIEAINVTGPNGI----PVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFG 124
+A V + P Q P + TV+ P R VK+++ RGFG
Sbjct: 118 GYQAFRVVSMDESTAIHPAQMLPPRTHVTVT---------PTSGLERAQVKWFNRLRGFG 168
Query: 125 FITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPV 184
F+T + DIFVH ++ + L G+ V G G K + A + G PV
Sbjct: 169 FLTCGEGTPDIFVHMETLRRFG----MTELRPGQYVLVRFGPGSKGMMAAEIHPETGSPV 224
>gi|240850648|ref|YP_002972048.1| cold shock protein [Bartonella grahamii as4aup]
gi|240267771|gb|ACS51359.1| cold shock protein [Bartonella grahamii as4aup]
Length = 191
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 83/184 (45%), Gaps = 21/184 (11%)
Query: 5 EIHTVRGIVKFYDSKRGFGFIT-RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
EI + G++K++D +G+GFI L + DI +H V + + FQ+ G V +
Sbjct: 22 EIIEISGVIKWFDGSKGYGFIVPDLPHFPDILLH----VTVMRRDGFQTALEGAKVICAV 77
Query: 64 GVGKKDIEAINVTG---PNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSK 120
++ ++ + V + I P + V+ P R IVK+++
Sbjct: 78 EKTERGLKCVQVKSIDCSSAIHPSEVPARTHVVVT---------PESGLERAIVKWFNRD 128
Query: 121 RGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPN 180
+G+GF++R EDIF+H ++ + L G++V G G+K + +
Sbjct: 129 KGYGFLSRGQGTEDIFIHMETLRRFG----LAELRSGQVVLVRFGKGEKGLMTAEIYPDI 184
Query: 181 GIPV 184
GIP+
Sbjct: 185 GIPL 188
>gi|386395451|ref|ZP_10080229.1| cold shock protein [Bradyrhizobium sp. WSM1253]
gi|385736077|gb|EIG56273.1| cold shock protein [Bradyrhizobium sp. WSM1253]
Length = 218
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 77/180 (42%), Gaps = 21/180 (11%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G++K++D+ +G+GFI + D+ +H V + + FQ+ G + K
Sbjct: 53 VHGVIKWFDASKGYGFIVPDNGWPDVLLH----VTVLRRDGFQTAYEGARIVVECIQRAK 108
Query: 69 DIEAINVTGPNGI----PVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFG 124
+A V + P Q P + TV+ T + R VK+++ RGFG
Sbjct: 109 GYQAFRVVSMDESTAIHPAQMLPPRTHVTVTATSGLE---------RAQVKWFNRLRGFG 159
Query: 125 FITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPV 184
F+T + DIFVH ++ + L G+ V G G K + A + G PV
Sbjct: 160 FLTCGEGTPDIFVHMETLRRFG----MTELRPGQYVLVRFGPGSKGMMAAEIHPETGSPV 215
>gi|288959216|ref|YP_003449557.1| cold shock protein [Azospirillum sp. B510]
gi|288911524|dbj|BAI73013.1| cold shock protein [Azospirillum sp. B510]
Length = 186
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 80/175 (45%), Gaps = 18/175 (10%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V VK+++ +GFGF++ D D F+H S++ + +L G + ++ G K
Sbjct: 20 VTATVKWFNPTKGFGFVSPEDGSPDAFLHVSAVQAAG----YDALDEGTTITCDLARGPK 75
Query: 69 DIEAINVTGPNGIPVQGAPKSSSETVSGTYRN-------DSFFPAVHTVRGIVKFYDSKR 121
+ ++ + + A +S+ G R D+ V G VK++++ +
Sbjct: 76 GPQVASI---HSVDASTAQRSARPRTGGFDRGGYDRGGYDAGGSGGEEVDGTVKWFNADK 132
Query: 122 GFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINV 176
GFGFIT +D+FVH V + + Q+L G+ V + G+K EA V
Sbjct: 133 GFGFITPSTGGKDVFVH----VNVLRRSGMQTLQEGDQVRVTVRQGQKGPEAGKV 183
>gi|431805794|ref|YP_007232695.1| Cold shock protein CspB [Liberibacter crescens BT-1]
gi|430799769|gb|AGA64440.1| Cold shock protein CspB [Liberibacter crescens BT-1]
Length = 193
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 65/130 (50%), Gaps = 8/130 (6%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G+VK++D +G+GF + +D+ +H + + + +QS+ G + + ++
Sbjct: 26 VTGVVKWFDLSKGYGFFVPDNGSKDVLLHVTCL----RRDGYQSILAGTRIVALVYKRER 81
Query: 69 DIEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFITR 128
+A + + V SS V T+ N P R VK++D RGFGF+TR
Sbjct: 82 GYQAFKILSADRSNV--IKPSSLSKVDSTFLN--IVPKSEIERVTVKWFDRVRGFGFLTR 137
Query: 129 LDNKEDIFVH 138
++ EDIF+H
Sbjct: 138 SEHNEDIFIH 147
>gi|294470718|gb|ADE80751.1| cold shock domain protein 1 [Eutrema salsugineum]
Length = 263
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 55/95 (57%), Gaps = 7/95 (7%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK-D 69
G V +++ +G+GFIT D+ E++FVH+S+I+ + F+SL +G+ V+F + G
Sbjct: 13 GKVNWFNDSKGYGFITPDDDGEELFVHQSAIL----SEGFRSLTVGDSVEFAVTQGTDGK 68
Query: 70 IEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFF 104
+A+NVT P G P+ K S +G R S +
Sbjct: 69 TKAVNVTAPGGAPLH--RKEISSRGNGARRGGSCY 101
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 48/75 (64%), Gaps = 5/75 (6%)
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK-D 170
G V +++ +G+GFIT D+ E++FVH+S+I+ + F+SL +G+ V+F + G
Sbjct: 13 GKVNWFNDSKGYGFITPDDDGEELFVHQSAIL----SEGFRSLTVGDSVEFAVTQGTDGK 68
Query: 171 IEAINVTGPNGIPVQ 185
+A+NVT P G P+
Sbjct: 69 TKAVNVTAPGGAPLH 83
>gi|319408547|emb|CBI82200.1| cold shock protein [Bartonella schoenbuchensis R1]
Length = 191
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 83/192 (43%), Gaps = 39/192 (20%)
Query: 5 EIHTVRGIVKFYDSKRGFGFIT-RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
EI + G++K++D +G+GFI L DI +H V + + FQ+ G + +
Sbjct: 22 EITEISGVIKWFDGSKGYGFIVPDLCGLPDILLH----VTVMRRDGFQTALEGAKIICVV 77
Query: 64 GVGKKDIEAINVTG--------PNGIPVQG----APKSSSETVSGTYRNDSFFPAVHTVR 111
++ ++ + V P+ IPV+ P+S E R
Sbjct: 78 KKTERGLKCVQVKSVDLSSAVHPSEIPVRTHIIVTPESGLE------------------R 119
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 171
IVK++D +GFGF++R EDIF+H ++ + L G++V G G+K +
Sbjct: 120 AIVKWFDRDKGFGFLSRGQGTEDIFIHMETLRRFG----LAELRSGQVVIVRFGKGEKGL 175
Query: 172 EAINVTGPNGIP 183
+ +P
Sbjct: 176 MTAEIYPDIALP 187
>gi|390948087|ref|YP_006411847.1| cold shock protein [Alistipes finegoldii DSM 17242]
gi|390424656|gb|AFL79162.1| cold shock protein [Alistipes finegoldii DSM 17242]
Length = 66
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 46/68 (67%), Gaps = 5/68 (7%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+ G VK++DSK+G+GFIT +N ++IFVH S IV F+SL G+ V+F +G G K
Sbjct: 1 MTGKVKWFDSKKGYGFITG-ENGKEIFVHFSGIVTDG----FKSLNEGQAVEFEVGSGAK 55
Query: 69 DIEAINVT 76
+A+NVT
Sbjct: 56 GEQAVNVT 63
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 46/68 (67%), Gaps = 5/68 (7%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+ G VK++DSK+G+GFIT +N ++IFVH S IV F+SL G+ V+F +G G K
Sbjct: 1 MTGKVKWFDSKKGYGFITG-ENGKEIFVHFSGIVTDG----FKSLNEGQAVEFEVGSGAK 55
Query: 170 DIEAINVT 177
+A+NVT
Sbjct: 56 GEQAVNVT 63
>gi|125602073|gb|EAZ41398.1| hypothetical protein OsJ_25919 [Oryza sativa Japonica Group]
Length = 91
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 49/79 (62%), Gaps = 7/79 (8%)
Query: 106 AVHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIG 165
A V+G VK++D+ +GFGFIT D ED+FVH+SS+ ++SL G++V+F++G
Sbjct: 2 ASERVKGTVKWFDATKGFGFITPDDGGEDLFVHQSSL----KSDGYRSLNDGDVVEFSVG 57
Query: 166 VGKKDIEAINVTGPNGIPV 184
G D V G GIPV
Sbjct: 58 SG-NDGRTKAVDG--GIPV 73
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 48/75 (64%), Gaps = 7/75 (9%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V+G VK++D+ +GFGFIT D ED+FVH+SS+ ++SL G++V+F++G G
Sbjct: 6 VKGTVKWFDATKGFGFITPDDGGEDLFVHQSSL----KSDGYRSLNDGDVVEFSVGSG-N 60
Query: 69 DIEAINVTGPNGIPV 83
D V G GIPV
Sbjct: 61 DGRTKAVDG--GIPV 73
>gi|172055299|ref|YP_001806626.1| putative cold shock protein, DNA-binding [Cyanothece sp. ATCC
51142]
gi|354556529|ref|ZP_08975823.1| cold-shock DNA-binding domain protein [Cyanothece sp. ATCC 51472]
gi|171701580|gb|ACB54560.1| putative cold shock protein, DNA-binding [Cyanothece sp. ATCC
51142]
gi|353551579|gb|EHC20981.1| cold-shock DNA-binding domain protein [Cyanothece sp. ATCC 51472]
Length = 64
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 42/67 (62%), Gaps = 7/67 (10%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+G VK++D+++G+GFI + D ED+FVH S + QSL G+ V++ +G G+K
Sbjct: 2 AQGQVKWFDTQKGYGFIAQQDGGEDLFVHYSEVQS-------QSLEEGQTVEYEVGQGRK 54
Query: 69 DIEAINV 75
A+NV
Sbjct: 55 GPCAVNV 61
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 42/67 (62%), Gaps = 7/67 (10%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+G VK++D+++G+GFI + D ED+FVH S + QSL G+ V++ +G G+K
Sbjct: 2 AQGQVKWFDTQKGYGFIAQQDGGEDLFVHYSEVQS-------QSLEEGQTVEYEVGQGRK 54
Query: 170 DIEAINV 176
A+NV
Sbjct: 55 GPCAVNV 61
>gi|84687162|ref|ZP_01015043.1| cold shock DNA-binding domain protein [Maritimibacter alkaliphilus
HTCC2654]
gi|84664750|gb|EAQ11233.1| cold shock DNA-binding domain protein [Maritimibacter alkaliphilus
HTCC2654]
Length = 185
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 73/172 (42%), Gaps = 16/172 (9%)
Query: 7 HTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVG 66
+ RG VK++D +GFGF+ DI +H + + G+ EIV + G
Sbjct: 19 YVQRGTVKWFDPAKGFGFVVADQGGPDILLHANVLRNFGQSSVADRAGI-EIVVQDTPRG 77
Query: 67 KKDIEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVR-GIVKFYDSKRGFGF 125
+ +E + + S ET++ T+ D + VK++D +GFGF
Sbjct: 78 MQAVEVLAIHAAE----------SEETITSTFTEDLDLSRADPLEPARVKWFDKGKGFGF 127
Query: 126 ITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVT 177
ED+F+H V++ + L GE + +G++ A+ VT
Sbjct: 128 ANAFGKPEDVFIH----VEVLRRSGLADLQPGEAIGMRAAMGERGRMALLVT 175
>gi|304413830|ref|ZP_07395247.1| Cold shock protein [Candidatus Regiella insecticola LSR1]
gi|304283550|gb|EFL91945.1| Cold shock protein [Candidatus Regiella insecticola LSR1]
Length = 88
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 4/72 (5%)
Query: 4 FEIHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
F++ ++G VK+++ +GFGFIT D +D+FVH S+I F++LG G+ V+F+I
Sbjct: 18 FKMSKIKGSVKWFNEAKGFGFITPDDKSKDVFVHFSAI----QGDGFKTLGEGQQVEFDI 73
Query: 64 GVGKKDIEAINV 75
GKK AINV
Sbjct: 74 EEGKKGPAAINV 85
Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 48/82 (58%), Gaps = 4/82 (4%)
Query: 95 SGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSL 154
+G N + ++G VK+++ +GFGFIT D +D+FVH S+I F++L
Sbjct: 8 TGKLNNAKEIFKMSKIKGSVKWFNEAKGFGFITPDDKSKDVFVHFSAI----QGDGFKTL 63
Query: 155 GLGEIVDFNIGVGKKDIEAINV 176
G G+ V+F+I GKK AINV
Sbjct: 64 GEGQQVEFDIEEGKKGPAAINV 85
>gi|334366282|ref|ZP_08515218.1| cold shock-like protein CspE [Alistipes sp. HGB5]
gi|313157470|gb|EFR56889.1| cold shock-like protein CspE [Alistipes sp. HGB5]
Length = 66
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 45/68 (66%), Gaps = 5/68 (7%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+ G VK++DSK+G+GFIT + KE IFVH S IV F+SL G+ V+F +G G K
Sbjct: 1 MTGKVKWFDSKKGYGFITGENGKE-IFVHFSGIVTDG----FKSLNEGQAVEFEVGSGAK 55
Query: 69 DIEAINVT 76
+A+NVT
Sbjct: 56 GDQAVNVT 63
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 45/68 (66%), Gaps = 5/68 (7%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+ G VK++DSK+G+GFIT + KE IFVH S IV F+SL G+ V+F +G G K
Sbjct: 1 MTGKVKWFDSKKGYGFITGENGKE-IFVHFSGIVTDG----FKSLNEGQAVEFEVGSGAK 55
Query: 170 DIEAINVT 177
+A+NVT
Sbjct: 56 GDQAVNVT 63
>gi|115524924|ref|YP_781835.1| cold-shock DNA-binding domain-containing protein [Rhodopseudomonas
palustris BisA53]
gi|115518871|gb|ABJ06855.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris
BisA53]
Length = 219
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 75/179 (41%), Gaps = 21/179 (11%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+ G++K++D+ +G+GFI + D+ +H V + + FQ+ G + K
Sbjct: 53 ISGVIKWFDASKGYGFIVPDNGWPDVLLH----VTVLRRDGFQTAYEGARIICECVQRAK 108
Query: 69 DIEAINVTGPNGI----PVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFG 124
+A V + P Q P + V+ P R VK+++ RGFG
Sbjct: 109 GYQAFRVVSMDESTAIHPAQMLPARTHVNVT---------PTSGLERAQVKWFNRLRGFG 159
Query: 125 FITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIP 183
F+T + DIFVH ++ + L G+ V G G K + A + NG P
Sbjct: 160 FLTCGEGTPDIFVHMETLRRFG----MTELRPGQYVLVRFGPGSKGMMAAEIQPENGAP 214
>gi|449497832|ref|XP_002196412.2| PREDICTED: protein lin-28 homolog B [Taeniopygia guttata]
Length = 250
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 13/88 (14%)
Query: 112 GIVKFYDSKRGFGFITRLDNKE--------DIFVHKSSIVKMNPKKFFQSLGLGEIVDFN 163
G K+++ + GFGFI+ + N+E D+FVH+S + F+SL GE V+F
Sbjct: 32 GHCKWFNVRMGFGFIS-MSNREGSPLESPVDVFVHQSKLYMEG----FRSLKEGEPVEFT 86
Query: 164 IGVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP G P G+ + P
Sbjct: 87 FKKSSKGLESIRVTGPGGSPCLGSERRP 114
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 13/84 (15%)
Query: 11 GIVKFYDSKRGFGFITRLDNKE--------DIFVHKSSIVKMNPKKFFQSLGLGEIVDFN 62
G K+++ + GFGFI+ + N+E D+FVH+S + F+SL GE V+F
Sbjct: 32 GHCKWFNVRMGFGFIS-MSNREGSPLESPVDVFVHQSKLYMEG----FRSLKEGEPVEFT 86
Query: 63 IGVGKKDIEAINVTGPNGIPVQGA 86
K +E+I VTGP G P G+
Sbjct: 87 FKKSSKGLESIRVTGPGGSPCLGS 110
>gi|402881711|ref|XP_003904408.1| PREDICTED: protein lin-28 homolog B-like [Papio anubis]
Length = 267
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 13/88 (14%)
Query: 112 GIVKFYDSKRGFGFITRLDNKE--------DIFVHKSSIVKMNPKKFFQSLGLGEIVDFN 163
G K+++ + GFGFI+ + N+E D+FVH+S + + F+SL GE V+F
Sbjct: 51 GHCKWFNVRMGFGFISMI-NREGSPLDIPVDVFVHQSKLFM----EGFRSLKEGEPVEFT 105
Query: 164 IGVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP GIP G+ + P
Sbjct: 106 FKKSSKGLESIRVTGPGGIPCLGSERRP 133
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 48/84 (57%), Gaps = 13/84 (15%)
Query: 11 GIVKFYDSKRGFGFITRLDNKE--------DIFVHKSSIVKMNPKKFFQSLGLGEIVDFN 62
G K+++ + GFGFI+ + N+E D+FVH+S + + F+SL GE V+F
Sbjct: 51 GHCKWFNVRMGFGFISMI-NREGSPLDIPVDVFVHQSKLFM----EGFRSLKEGEPVEFT 105
Query: 63 IGVGKKDIEAINVTGPNGIPVQGA 86
K +E+I VTGP GIP G+
Sbjct: 106 FKKSSKGLESIRVTGPGGIPCLGS 129
>gi|449273600|gb|EMC83073.1| Lin-28 like protein B, partial [Columba livia]
Length = 249
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 13/88 (14%)
Query: 112 GIVKFYDSKRGFGFITRLDNKE--------DIFVHKSSIVKMNPKKFFQSLGLGEIVDFN 163
G K+++ + GFGFI+ + N+E D+FVH+S + F+SL GE V+F
Sbjct: 31 GHCKWFNVRMGFGFIS-MSNREGSPLESPVDVFVHQSKLYMEG----FRSLKEGEPVEFT 85
Query: 164 IGVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP G P G+ + P
Sbjct: 86 FKKSSKGLESIRVTGPGGSPCLGSERRP 113
Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 13/84 (15%)
Query: 11 GIVKFYDSKRGFGFITRLDNKE--------DIFVHKSSIVKMNPKKFFQSLGLGEIVDFN 62
G K+++ + GFGFI+ + N+E D+FVH+S + F+SL GE V+F
Sbjct: 31 GHCKWFNVRMGFGFIS-MSNREGSPLESPVDVFVHQSKLYMEG----FRSLKEGEPVEFT 85
Query: 63 IGVGKKDIEAINVTGPNGIPVQGA 86
K +E+I VTGP G P G+
Sbjct: 86 FKKSSKGLESIRVTGPGGSPCLGS 109
>gi|395766674|ref|ZP_10447213.1| hypothetical protein MCS_00146 [Bartonella doshiae NCTC 12862]
gi|395415798|gb|EJF82225.1| hypothetical protein MCS_00146 [Bartonella doshiae NCTC 12862]
Length = 191
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 81/188 (43%), Gaps = 39/188 (20%)
Query: 9 VRGIVKFYDSKRGFGFIT-RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI---- 63
V G++K++DS +G+GFI L DI +H V + + FQ+ G V +
Sbjct: 26 VNGVIKWFDSSKGYGFIVPDLPGFPDILLH----VTVMRRDGFQTALEGAKVVCAVEKTE 81
Query: 64 ----GVGKKDIEAINVTGPNGIPVQGA----PKSSSETVSGTYRNDSFFPAVHTVRGIVK 115
V K I+ + P+ IP + P+S E R IVK
Sbjct: 82 RGLKCVQVKSIDCSSAIHPSEIPARTHVVVNPESGLE------------------RAIVK 123
Query: 116 FYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAIN 175
+++ +GFGF++R EDIF+H ++ + L G++V G G+K +
Sbjct: 124 WFNRDKGFGFLSRGQGTEDIFIHMETLRRFG----LAELRSGQVVLIRYGKGEKGLMTAE 179
Query: 176 VTGPNGIP 183
+ GIP
Sbjct: 180 IYPDIGIP 187
>gi|255078512|ref|XP_002502836.1| cold-shock protein with RNA binding domain [Micromonas sp. RCC299]
gi|226518102|gb|ACO64094.1| cold-shock protein with RNA binding domain [Micromonas sp. RCC299]
Length = 305
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 53/90 (58%), Gaps = 5/90 (5%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIG-VGKK 68
+G+V +++ +GFGF+TR D D+FVH+S I + F+SL E V+F + +G
Sbjct: 45 KGVVNWFNVAKGFGFVTRDDGVGDVFVHQSDIY----AEGFRSLRDQEPVEFELEPMGDG 100
Query: 69 DIEAINVTGPNGIPVQGAPKSSSETVSGTY 98
+A+ VTGP+G V+GA +S G Y
Sbjct: 101 RYKAVKVTGPDGAFVRGALPRNSYRQRGPY 130
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 49/78 (62%), Gaps = 5/78 (6%)
Query: 111 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIG-VGKK 169
+G+V +++ +GFGF+TR D D+FVH+S I + F+SL E V+F + +G
Sbjct: 45 KGVVNWFNVAKGFGFVTRDDGVGDVFVHQSDIY----AEGFRSLRDQEPVEFELEPMGDG 100
Query: 170 DIEAINVTGPNGIPVQGA 187
+A+ VTGP+G V+GA
Sbjct: 101 RYKAVKVTGPDGAFVRGA 118
>gi|395789816|ref|ZP_10469324.1| hypothetical protein ME9_01041 [Bartonella taylorii 8TBB]
gi|395428038|gb|EJF94120.1| hypothetical protein ME9_01041 [Bartonella taylorii 8TBB]
Length = 191
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 82/192 (42%), Gaps = 39/192 (20%)
Query: 5 EIHTVRGIVKFYDSKRGFGFIT-RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
EI + G++K++D +G+GFI L DI +H V + + FQ+ G V +
Sbjct: 22 EIIEISGVIKWFDGSKGYGFIIPDLPGFPDILLH----VTVMRRDGFQTALEGAKVVCAV 77
Query: 64 --------GVGKKDIEAINVTGPNGIPVQG----APKSSSETVSGTYRNDSFFPAVHTVR 111
V K I+ + P+ IP + P+S E R
Sbjct: 78 EKTERGLKCVQVKSIDCSSAIHPSEIPARTHVVVTPESGLE------------------R 119
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 171
IVK+++ +GFGF++R EDIF+H ++ + L G++V G G+K +
Sbjct: 120 AIVKWFNRDKGFGFLSRGQGTEDIFIHMETLRRFG----LAELRSGQVVLVRFGKGEKGL 175
Query: 172 EAINVTGPNGIP 183
+ GIP
Sbjct: 176 MTAEIYPDIGIP 187
>gi|316934326|ref|YP_004109308.1| cold-shock DNA-binding domain-containing protein [Rhodopseudomonas
palustris DX-1]
gi|315602040|gb|ADU44575.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris
DX-1]
Length = 231
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 79/177 (44%), Gaps = 17/177 (9%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDF-NIGVGK 67
+ G +K++D+ +G+GF+ + D+ +H + + + + ++ G +V+ G
Sbjct: 65 ISGFIKWFDASKGYGFVVPDNGWPDVLLHVTVLRRDGYQTAYE--GARIVVECVQRAKGY 122
Query: 68 KDIEAINVTGPNGI-PVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFI 126
+ +++ I P Q P + +V+ P R VK+++ RGFGF+
Sbjct: 123 QAFRVVSMDESTAIHPAQMLPARTHVSVT---------PTSGLERAQVKWFNRLRGFGFL 173
Query: 127 TRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIP 183
T + DIFVH ++ + L G+ V G G K + A + NG+P
Sbjct: 174 TCGEGTPDIFVHMETLRRYG----MTELRPGQYVLVRFGPGSKGMMAAEIQPENGVP 226
>gi|300676769|gb|ADK26645.1| lin-28 homolog B [Zonotrichia albicollis]
Length = 245
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 13/88 (14%)
Query: 112 GIVKFYDSKRGFGFITRLDNKE--------DIFVHKSSIVKMNPKKFFQSLGLGEIVDFN 163
G K+++ + GFGFI+ + N+E D+FVH+S + F+SL GE V+F
Sbjct: 27 GHCKWFNVRMGFGFIS-MSNREGSPLESPVDVFVHQSKLYMEG----FRSLKEGEPVEFT 81
Query: 164 IGVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP G P G+ + P
Sbjct: 82 FKKSSKGLESIRVTGPGGSPCLGSERRP 109
Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 13/84 (15%)
Query: 11 GIVKFYDSKRGFGFITRLDNKE--------DIFVHKSSIVKMNPKKFFQSLGLGEIVDFN 62
G K+++ + GFGFI+ + N+E D+FVH+S + F+SL GE V+F
Sbjct: 27 GHCKWFNVRMGFGFIS-MSNREGSPLESPVDVFVHQSKLYMEG----FRSLKEGEPVEFT 81
Query: 63 IGVGKKDIEAINVTGPNGIPVQGA 86
K +E+I VTGP G P G+
Sbjct: 82 FKKSSKGLESIRVTGPGGSPCLGS 105
>gi|297291425|ref|XP_002803893.1| PREDICTED: protein lin-28 homolog B isoform 2 [Macaca mulatta]
Length = 255
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 13/88 (14%)
Query: 112 GIVKFYDSKRGFGFITRLDNKE--------DIFVHKSSIVKMNPKKFFQSLGLGEIVDFN 163
G K+++ + GFGFI+ + N+E D+FVH+S + + F+SL GE V+F
Sbjct: 39 GHCKWFNVRMGFGFISMI-NREGSPLDIPVDVFVHQSKLFM----EGFRSLKEGEPVEFT 93
Query: 164 IGVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP GIP G+ + P
Sbjct: 94 FKKSSKGLESIRVTGPGGIPCLGSERRP 121
Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 51/92 (55%), Gaps = 15/92 (16%)
Query: 5 EIHTVRGI--VKFYDSKRGFGFITRLDNKE--------DIFVHKSSIVKMNPKKFFQSLG 54
E +RG K+++ + GFGFI+ + N+E D+FVH+S + + F+SL
Sbjct: 31 ESQVLRGTGHCKWFNVRMGFGFISMI-NREGSPLDIPVDVFVHQSKLFM----EGFRSLK 85
Query: 55 LGEIVDFNIGVGKKDIEAINVTGPNGIPVQGA 86
GE V+F K +E+I VTGP GIP G+
Sbjct: 86 EGEPVEFTFKKSSKGLESIRVTGPGGIPCLGS 117
>gi|355561931|gb|EHH18563.1| hypothetical protein EGK_15200, partial [Macaca mulatta]
gi|355748780|gb|EHH53263.1| hypothetical protein EGM_13869, partial [Macaca fascicularis]
Length = 247
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 13/88 (14%)
Query: 112 GIVKFYDSKRGFGFITRLDNKE--------DIFVHKSSIVKMNPKKFFQSLGLGEIVDFN 163
G K+++ + GFGFI+ + N+E D+FVH+S + F+SL GE V+F
Sbjct: 31 GHCKWFNVRMGFGFISMI-NREGSPLDIPVDVFVHQSKLFMEG----FRSLKEGEPVEFT 85
Query: 164 IGVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP GIP G+ + P
Sbjct: 86 FKKSSKGLESIRVTGPGGIPCLGSERRP 113
Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 50/92 (54%), Gaps = 15/92 (16%)
Query: 5 EIHTVRGI--VKFYDSKRGFGFITRLDNKE--------DIFVHKSSIVKMNPKKFFQSLG 54
E +RG K+++ + GFGFI+ + N+E D+FVH+S + F+SL
Sbjct: 23 ESQVLRGTGHCKWFNVRMGFGFISMI-NREGSPLDIPVDVFVHQSKLFMEG----FRSLK 77
Query: 55 LGEIVDFNIGVGKKDIEAINVTGPNGIPVQGA 86
GE V+F K +E+I VTGP GIP G+
Sbjct: 78 EGEPVEFTFKKSSKGLESIRVTGPGGIPCLGS 109
>gi|217976725|ref|YP_002360872.1| cold-shock DNA-binding domain-containing protein [Methylocella
silvestris BL2]
gi|217502101|gb|ACK49510.1| cold-shock DNA-binding domain protein [Methylocella silvestris BL2]
Length = 217
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 80/178 (44%), Gaps = 21/178 (11%)
Query: 8 TVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGK 67
++ +VK++ +GFGF+ + D F+H ++ ++++ G + N+ G
Sbjct: 51 SIDAVVKWFKGDKGFGFVELGNGTGDAFLHIGALQAAG----YETVPPGAKLKVNVSNGM 106
Query: 68 KDIEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVH--------TVRGIVKFYDS 119
K + V + V A + + +DS PA +V G VK++D
Sbjct: 107 KGAQVTRV-----LEVDTAGAAERAPQQPRFSSDSPRPARRAPDPSTAISVTGTVKWFDD 161
Query: 120 KRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVT 177
+GFGF+ D +D+FVH I + P Q+L G+ V + K EA++++
Sbjct: 162 NKGFGFVQSNDGGKDVFVH---ISILGPSG-VQNLAEGQAVSMRVVDTPKGREALSIS 215
>gi|389578433|ref|ZP_10168460.1| cold shock protein [Desulfobacter postgatei 2ac9]
gi|389400068|gb|EIM62290.1| cold shock protein [Desulfobacter postgatei 2ac9]
Length = 67
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 42/66 (63%), Gaps = 4/66 (6%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 70
G VK+++ +GFGFI + D +D+FVH S+I K F+SL GE V FNI G+K
Sbjct: 4 GTVKWFNDSKGFGFIEQDDGGKDVFVHHSAINKPG----FKSLKEGERVSFNIEQGQKGP 59
Query: 71 EAINVT 76
A+NVT
Sbjct: 60 SAVNVT 65
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 42/66 (63%), Gaps = 4/66 (6%)
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 171
G VK+++ +GFGFI + D +D+FVH S+I K F+SL GE V FNI G+K
Sbjct: 4 GTVKWFNDSKGFGFIEQDDGGKDVFVHHSAINKPG----FKSLKEGERVSFNIEQGQKGP 59
Query: 172 EAINVT 177
A+NVT
Sbjct: 60 SAVNVT 65
>gi|225848261|ref|YP_002728424.1| hypothetical protein SULAZ_0432 [Sulfurihydrogenibium azorense
Az-Fu1]
gi|225644220|gb|ACN99270.1| conserved domain protein [Sulfurihydrogenibium azorense Az-Fu1]
Length = 68
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 44/67 (65%), Gaps = 4/67 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK++DSK+GFGFITR DN +DIFVH S+I + F++L G+ V+F I +K
Sbjct: 3 VTGTVKWFDSKKGFGFITRDDNGQDIFVHFSAI----QGRGFKNLEEGQKVEFEIVQEEK 58
Query: 69 DIEAINV 75
A NV
Sbjct: 59 GPRAANV 65
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 44/67 (65%), Gaps = 4/67 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK++DSK+GFGFITR DN +DIFVH S+I + F++L G+ V+F I +K
Sbjct: 3 VTGTVKWFDSKKGFGFITRDDNGQDIFVHFSAI----QGRGFKNLEEGQKVEFEIVQEEK 58
Query: 170 DIEAINV 176
A NV
Sbjct: 59 GPRAANV 65
>gi|407974365|ref|ZP_11155274.1| cold-shock DNA-binding protein family protein [Nitratireductor
indicus C115]
gi|407430054|gb|EKF42729.1| cold-shock DNA-binding protein family protein [Nitratireductor
indicus C115]
Length = 222
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 85/179 (47%), Gaps = 26/179 (14%)
Query: 5 EIHTVRGIVKFYDSKRGFGFITRLDNKE---DIFVHKSSIVKMNPKKFFQSLGLGEIVDF 61
E+ + G +K++D +G+GF+ L ++E D+ +H + + K FQ+ G ++
Sbjct: 52 EVVEISGAIKWFDVAKGYGFV--LPDEEGHGDVLLHVTCL----RKDGFQTALEGARIEC 105
Query: 62 NIGVGKKDIEA---INVTGPNGI-PVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFY 117
G K ++A I++ + PV+ + TV+ P R +VK++
Sbjct: 106 LARQGDKGMQAFKVISIDLSTAVHPVEDQTPRTHVTVT---------PESGLERALVKWF 156
Query: 118 DSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINV 176
+ +GFGF+TR + EDIFVH ++ + L G++V G G K + A +
Sbjct: 157 NRTKGFGFLTRGEGTEDIFVHMETLRRYG----VTELRPGQVVLVRFGRGDKGLMAAEI 211
>gi|300676881|gb|ADK26753.1| lin-28 homolog B [Zonotrichia albicollis]
Length = 245
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 13/88 (14%)
Query: 112 GIVKFYDSKRGFGFITRLDNKE--------DIFVHKSSIVKMNPKKFFQSLGLGEIVDFN 163
G K+++ + GFGFI+ + N+E D+FVH+S + F+SL GE V+F
Sbjct: 27 GHCKWFNVRMGFGFIS-MSNREGSPLESPVDVFVHQSKLYMEG----FRSLKEGEPVEFT 81
Query: 164 IGVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP G P G+ + P
Sbjct: 82 FKKSSKGLESIRVTGPGGSPCLGSERRP 109
Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 13/84 (15%)
Query: 11 GIVKFYDSKRGFGFITRLDNKE--------DIFVHKSSIVKMNPKKFFQSLGLGEIVDFN 62
G K+++ + GFGFI+ + N+E D+FVH+S + F+SL GE V+F
Sbjct: 27 GHCKWFNVRMGFGFIS-MSNREGSPLESPVDVFVHQSKLYMEG----FRSLKEGEPVEFT 81
Query: 63 IGVGKKDIEAINVTGPNGIPVQGA 86
K +E+I VTGP G P G+
Sbjct: 82 FKKSSKGLESIRVTGPGGSPCLGS 105
>gi|395778184|ref|ZP_10458697.1| hypothetical protein MCU_00398 [Bartonella elizabethae Re6043vi]
gi|423715558|ref|ZP_17689782.1| hypothetical protein MEE_00983 [Bartonella elizabethae F9251]
gi|395418493|gb|EJF84820.1| hypothetical protein MCU_00398 [Bartonella elizabethae Re6043vi]
gi|395429685|gb|EJF95746.1| hypothetical protein MEE_00983 [Bartonella elizabethae F9251]
Length = 191
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 82/192 (42%), Gaps = 39/192 (20%)
Query: 5 EIHTVRGIVKFYDSKRGFGFIT-RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
EI + G++K++D +G+GFI L + DI +H V + + FQ+ G V +
Sbjct: 22 EIIEISGVIKWFDGSKGYGFIVPDLPHFPDILLH----VTVMRRDGFQTALEGAKVTCAV 77
Query: 64 --------GVGKKDIEAINVTGPNGIPVQG----APKSSSETVSGTYRNDSFFPAVHTVR 111
V K I+ + P+ +P + P+S E R
Sbjct: 78 EKTERGLKCVQVKSIDCSSAVHPSEVPARTHVVVTPESGLE------------------R 119
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 171
IVK+++ +GFGF++R EDIF+H ++ + L G++V G G+K +
Sbjct: 120 AIVKWFNRDKGFGFLSRGQGTEDIFIHMETLRRFG----LAELRSGQVVLVRFGKGEKGL 175
Query: 172 EAINVTGPNGIP 183
+ G P
Sbjct: 176 MTAEIYPDIGFP 187
>gi|109072184|ref|XP_001086990.1| PREDICTED: protein lin-28 homolog B isoform 1 [Macaca mulatta]
Length = 248
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 13/88 (14%)
Query: 112 GIVKFYDSKRGFGFITRLDNKE--------DIFVHKSSIVKMNPKKFFQSLGLGEIVDFN 163
G K+++ + GFGFI+ + N+E D+FVH+S + + F+SL GE V+F
Sbjct: 32 GHCKWFNVRMGFGFISMI-NREGSPLDIPVDVFVHQSKLFM----EGFRSLKEGEPVEFT 86
Query: 164 IGVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP GIP G+ + P
Sbjct: 87 FKKSSKGLESIRVTGPGGIPCLGSERRP 114
Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 48/84 (57%), Gaps = 13/84 (15%)
Query: 11 GIVKFYDSKRGFGFITRLDNKE--------DIFVHKSSIVKMNPKKFFQSLGLGEIVDFN 62
G K+++ + GFGFI+ + N+E D+FVH+S + + F+SL GE V+F
Sbjct: 32 GHCKWFNVRMGFGFISMI-NREGSPLDIPVDVFVHQSKLFM----EGFRSLKEGEPVEFT 86
Query: 63 IGVGKKDIEAINVTGPNGIPVQGA 86
K +E+I VTGP GIP G+
Sbjct: 87 FKKSSKGLESIRVTGPGGIPCLGS 110
>gi|319783223|ref|YP_004142699.1| cold-shock protein [Mesorhizobium ciceri biovar biserrulae WSM1271]
gi|317169111|gb|ADV12649.1| Cold-shock protein DNA-binding protein [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 198
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 14/169 (8%)
Query: 9 VRGIVKFYDSKRGFGFITRLDN-KEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGK 67
V G +K++D +G+GFI D DI +H + + + FQ+ G V + G+
Sbjct: 32 VAGAIKWFDVAKGYGFILPDDGISGDILLHVTCL----RRDGFQTALEGARVVCLVKHGE 87
Query: 68 KDIEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFIT 127
+ ++A V + + P E + + + P R +VK+++ +GFGF+T
Sbjct: 88 RGLQAFRVLSMD-VTTAVHPAEMQEQRT----HVAVTPESGLERALVKWFNRTKGFGFLT 142
Query: 128 RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINV 176
R + EDIFVH ++ + L G++V G G K + A +
Sbjct: 143 RGEGTEDIFVHMETLRRYG----VTELRPGQVVLVRFGRGDKGLMAAEI 187
>gi|388500632|gb|AFK38382.1| unknown [Medicago truncatula]
Length = 134
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+ G VK+++ ++GFGFIT D E++FVH+S I F+SL GE V++ I
Sbjct: 6 LTGKVKWFNDQKGFGFITPDDGSEELFVHQSQIQTDG----FRSLAEGESVEYQIESDND 61
Query: 69 D-IEAINVTGPNGIPVQ 84
+A++VTGP+G VQ
Sbjct: 62 GRSKAVSVTGPDGASVQ 78
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+ G VK+++ ++GFGFIT D E++FVH+S I F+SL GE V++ I
Sbjct: 6 LTGKVKWFNDQKGFGFITPDDGSEELFVHQSQIQTDG----FRSLAEGESVEYQIESDND 61
Query: 170 D-IEAINVTGPNGIPVQ 185
+A++VTGP+G VQ
Sbjct: 62 GRSKAVSVTGPDGASVQ 78
>gi|339477759|ref|YP_004706579.1| putative major cold shock protein [Candidatus Moranella endobia
PCIT]
gi|338172310|gb|AEI74711.1| putative major cold shock protein [Candidatus Moranella endobia
PCIT]
Length = 72
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 42/67 (62%), Gaps = 4/67 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G+VK++D+ +GFGFIT D D+FVH S+I N F++L G+ V+F I G+K
Sbjct: 7 VTGLVKWFDAGKGFGFITPTDGSRDVFVHFSAIQSNN----FKTLDEGQRVEFTIEQGQK 62
Query: 69 DIEAINV 75
A NV
Sbjct: 63 GPSAANV 69
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 42/67 (62%), Gaps = 4/67 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G+VK++D+ +GFGFIT D D+FVH S+I N F++L G+ V+F I G+K
Sbjct: 7 VTGLVKWFDAGKGFGFITPTDGSRDVFVHFSAIQSNN----FKTLDEGQRVEFTIEQGQK 62
Query: 170 DIEAINV 176
A NV
Sbjct: 63 GPSAANV 69
>gi|119503291|ref|ZP_01625375.1| putative Cold-shock protein [marine gamma proteobacterium
HTCC2080]
gi|119460937|gb|EAW42028.1| putative Cold-shock protein [marine gamma proteobacterium
HTCC2080]
Length = 70
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 4/68 (5%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 70
G+VK++++ +GFGFIT D +EDIFVH +I ++SL G+ V+F + G K +
Sbjct: 7 GVVKWFNNAKGFGFITMTDREEDIFVHFRAI----QGDGYRSLNEGDAVEFTLAEGDKGL 62
Query: 71 EAINVTGP 78
+A VT P
Sbjct: 63 QAEEVTKP 70
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 4/68 (5%)
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 171
G+VK++++ +GFGFIT D +EDIFVH +I ++SL G+ V+F + G K +
Sbjct: 7 GVVKWFNNAKGFGFITMTDREEDIFVHFRAI----QGDGYRSLNEGDAVEFTLAEGDKGL 62
Query: 172 EAINVTGP 179
+A VT P
Sbjct: 63 QAEEVTKP 70
>gi|170740501|ref|YP_001769156.1| cold-shock DNA-binding domain-containing protein [Methylobacterium
sp. 4-46]
gi|168194775|gb|ACA16722.1| cold-shock DNA-binding domain protein [Methylobacterium sp. 4-46]
Length = 242
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 76/183 (41%), Gaps = 25/183 (13%)
Query: 12 IVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIE 71
VK+++ ++GFGF+ D D F+H ++ L G + G+K +
Sbjct: 65 TVKWFNKEKGFGFVELGDGSGDAFLHIRAVEAAG----HADLLPGTRLTVQTAQGQKGPQ 120
Query: 72 AINVTGPNG----IPVQGAPK------------SSSETVSGTYRNDSFFPAVHT-VRGIV 114
N+T + P P+ G F T + G V
Sbjct: 121 VTNITSVDTSTAEAPAARGPRPPRAGGFGGGGGGYGAGGGGGGGGGRFASGPSTEMSGTV 180
Query: 115 KFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAI 174
K+YD +GFGF++ D +D+FVH+S++ + SL G+ V + G+K EA
Sbjct: 181 KWYDPAKGFGFVSVKDGGKDVFVHRSALARAG----LDSLAEGQQVTMGVVEGQKGREAQ 236
Query: 175 NVT 177
++T
Sbjct: 237 SIT 239
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 70
G VK+YD +GFGF++ D +D+FVH+S++ + SL G+ V + G+K
Sbjct: 178 GTVKWYDPAKGFGFVSVKDGGKDVFVHRSALARAG----LDSLAEGQQVTMGVVEGQKGR 233
Query: 71 EAINVT 76
EA ++T
Sbjct: 234 EAQSIT 239
>gi|18398546|ref|NP_565427.1| cold shock domain protein 3 [Arabidopsis thaliana]
gi|75165198|sp|Q94C69.1|CSP3_ARATH RecName: Full=Cold shock domain-containing protein 3;
Short=AtCSP3
gi|14334920|gb|AAK59638.1| putative glycine-rich, zinc-finger DNA-binding protein
[Arabidopsis thaliana]
gi|17104541|gb|AAL34159.1| putative glycine-rich, zinc-finger DNA-binding protein
[Arabidopsis thaliana]
gi|148726892|dbj|BAF63841.1| cold shock domain protein 3 [Arabidopsis thaliana]
gi|330251603|gb|AEC06697.1| cold shock domain protein 3 [Arabidopsis thaliana]
Length = 301
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 5/71 (7%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK-D 69
G V ++ +G+GFIT D E++FVH+SSIV F+SL LGE V++ I +G
Sbjct: 13 GKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSDG----FRSLTLGESVEYEIALGSDGK 68
Query: 70 IEAINVTGPNG 80
+AI VT P G
Sbjct: 69 TKAIEVTAPGG 79
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 5/71 (7%)
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK-D 170
G V ++ +G+GFIT D E++FVH+SSIV F+SL LGE V++ I +G
Sbjct: 13 GKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSDG----FRSLTLGESVEYEIALGSDGK 68
Query: 171 IEAINVTGPNG 181
+AI VT P G
Sbjct: 69 TKAIEVTAPGG 79
>gi|304393756|ref|ZP_07375684.1| cold shock protein [Ahrensia sp. R2A130]
gi|303294763|gb|EFL89135.1| cold shock protein [Ahrensia sp. R2A130]
Length = 216
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 76/176 (43%), Gaps = 21/176 (11%)
Query: 5 EIHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIG 64
++ V G +K++D +GFGF+ D+ D+ +H S + FQ+ G + +
Sbjct: 46 DVFVVAGAIKWFDVSKGFGFVVPDDDMPDVLLHVSCLRD----DGFQTAHEGARIVCEVV 101
Query: 65 VGKKDIEAINVTGPNGI----PVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSK 120
+ ++A V + P Q P + V P VR VK+++
Sbjct: 102 RKARGLQAFRVLSMDNSTAIHPSQLPPARTHVDVE---------PTSDIVRTEVKWFNRT 152
Query: 121 RGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINV 176
+GFGF+T+ + EDIF+H ++ + L G+ V G G K + A V
Sbjct: 153 KGFGFLTQGEGTEDIFIHMETLRRFG----LTELRPGQHVMVRYGHGDKGLMAAEV 204
Score = 37.0 bits (84), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 81 IPVQGAPKSSSETVSGTYRN--DSFFPAVHTVRGIVKFYDSKRGFGFITRLDNKEDIFVH 138
IP+ +S T T + D P V V G +K++D +GFGF+ D+ D+ +H
Sbjct: 19 IPISLGEGASDNTSEHTLISPADGISPDVFVVAGAIKWFDVSKGFGFVVPDDDMPDVLLH 78
Query: 139 KSSI 142
S +
Sbjct: 79 VSCL 82
>gi|260577276|ref|ZP_05845250.1| cold-shock DNA-binding domain protein [Rhodobacter sp. SW2]
gi|259020520|gb|EEW23842.1| cold-shock DNA-binding domain protein [Rhodobacter sp. SW2]
Length = 177
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 81/187 (43%), Gaps = 24/187 (12%)
Query: 6 IHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQ-SLGLGEIVDFNIG 64
+ TV G VK++D +GFGFI + DI +H + + + + Q S+ G + N+
Sbjct: 8 VQTVHGHVKWFDPTKGFGFIVADEGGPDILLHANVL-----RNYGQSSVADGTAISVNVQ 62
Query: 65 V---GKKDIEAINVTGPNGI--PVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDS 119
G++ +E + + P + P+ + +G + V R VK++D
Sbjct: 63 ATQRGRQAVEVLEIEPPVAVFFPM-------GDDGTGATPEEIAARPVEPAR--VKWFDK 113
Query: 120 KRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGP 179
+GFGF ED+FVH V++ F L GE V I GK+ A+ V
Sbjct: 114 GKGFGFANVFGRPEDVFVH----VEVLRLSGFADLAAGEAVGLRILDGKRGRMAVQVVSW 169
Query: 180 NGIPVQG 186
+ G
Sbjct: 170 EAVARHG 176
>gi|15234010|ref|NP_195580.1| glycine rich protein 2 [Arabidopsis thaliana]
gi|75319603|sp|Q41188.1|CSP2_ARATH RecName: Full=Cold shock protein 2; Short=AtCSP2; AltName:
Full=Cold shock domain-containing protein 2; AltName:
Full=Glycine-rich protein 2; Short=AtGRP2
gi|13430580|gb|AAK25912.1|AF360202_1 putative glycine-rich protein GRP2 [Arabidopsis thaliana]
gi|14326487|gb|AAK60289.1|AF385696_1 AT4g38680/F20M13_240 [Arabidopsis thaliana]
gi|259445|gb|AAB24074.1| glycine-rich protein [Arabidopsis thaliana]
gi|4467155|emb|CAB37524.1| glycine-rich protein 2 (GRP2) [Arabidopsis thaliana]
gi|7270851|emb|CAB80532.1| glycine-rich protein 2 (GRP2) [Arabidopsis thaliana]
gi|14532850|gb|AAK64107.1| putative glycine-rich protein 2 [Arabidopsis thaliana]
gi|22137152|gb|AAM91421.1| AT4g38680/F20M13_240 [Arabidopsis thaliana]
gi|332661564|gb|AEE86964.1| glycine rich protein 2 [Arabidopsis thaliana]
Length = 203
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 53/77 (68%), Gaps = 5/77 (6%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 69
+G VK++D+++GFGFIT D +D+FVH+SSI + F+SL E V+F + + +
Sbjct: 12 KGSVKWFDTQKGFGFITPDDGGDDLFVHQSSIR----SEGFRSLAAEEAVEFEVEIDNNN 67
Query: 70 I-EAINVTGPNGIPVQG 85
+AI+V+GP+G PVQG
Sbjct: 68 RPKAIDVSGPDGAPVQG 84
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 53/77 (68%), Gaps = 5/77 (6%)
Query: 111 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 170
+G VK++D+++GFGFIT D +D+FVH+SSI + F+SL E V+F + + +
Sbjct: 12 KGSVKWFDTQKGFGFITPDDGGDDLFVHQSSIR----SEGFRSLAAEEAVEFEVEIDNNN 67
Query: 171 I-EAINVTGPNGIPVQG 186
+AI+V+GP+G PVQG
Sbjct: 68 RPKAIDVSGPDGAPVQG 84
>gi|86750055|ref|YP_486551.1| cold-shock DNA-binding domain-containing protein [Rhodopseudomonas
palustris HaA2]
gi|86573083|gb|ABD07640.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris
HaA2]
Length = 221
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 78/175 (44%), Gaps = 17/175 (9%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDF-NIGVGKKD 69
G++K++D+ +G+GFI + D+ +H + + + + ++ + +V+ G +
Sbjct: 57 GVIKWFDASKGYGFIVPDNGAADVLLHVTVLRRDGYQTAYEGARI--VVECVQRAKGYQA 114
Query: 70 IEAINVTGPNGI-PVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFITR 128
+++ I P Q P + +V+ P R VK+++ RGFGF+T
Sbjct: 115 FRVVSMDESTAIHPAQMLPPRTHVSVT---------PTSGLERAQVKWFNRLRGFGFLTC 165
Query: 129 LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIP 183
+ DIFVH ++ + L G+ V G G K + A + NG P
Sbjct: 166 GEGTPDIFVHMETLRRYG----MTELRPGQYVLVRFGPGSKGMMAAEIQPENGAP 216
>gi|321468514|gb|EFX79498.1| hypothetical protein DAPPUDRAFT_52316 [Daphnia pulex]
Length = 147
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 4/80 (5%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 70
G K+++ +G+GFIT D D+FVH+ S+++MN F++L GE V+ K
Sbjct: 1 GRCKWFNVTKGWGFITPDDGSPDVFVHQ-SVIRMN---GFRNLAEGEEVEMETKDADKGA 56
Query: 71 EAINVTGPNGIPVQGAPKSS 90
EA VTGP G +G+ + +
Sbjct: 57 EATVVTGPGGTECRGSHRQA 76
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 171
G K+++ +G+GFIT D D+FVH+ S+++MN F++L GE V+ K
Sbjct: 1 GRCKWFNVTKGWGFITPDDGSPDVFVHQ-SVIRMN---GFRNLAEGEEVEMETKDADKGA 56
Query: 172 EAINVTGPNGIPVQGA 187
EA VTGP G +G+
Sbjct: 57 EATVVTGPGGTECRGS 72
>gi|374292847|ref|YP_005039882.1| putative cold shock protein [Azospirillum lipoferum 4B]
gi|357424786|emb|CBS87665.1| Putative cold shock protein [Azospirillum lipoferum 4B]
Length = 187
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 78/173 (45%), Gaps = 13/173 (7%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V VK+++ +GFGF++ D D F+H S++ + +L G + ++ G K
Sbjct: 20 VTATVKWFNPTKGFGFVSPEDGSPDAFLHVSAVQAAG----YDALDEGTTITCDLARGPK 75
Query: 69 --DIEAINVTGPNGIPVQGAPKSSSETVSGTYR---NDSFFPAVHTVRGIVKFYDSKRGF 123
+ +I+ + P++ G R + V G VK++++ +GF
Sbjct: 76 GPQVASIHTVDTSTAQRSARPRTGGFDRGGYDRGGYDAGGSSGGEEVDGTVKWFNADKGF 135
Query: 124 GFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINV 176
GFIT +D+FVH V + + Q+L G+ V + G+K EA V
Sbjct: 136 GFITPSTGGKDVFVH----VNVLRRSGMQTLQEGDQVRVTVRQGQKGPEAGKV 184
>gi|13470456|ref|NP_102024.1| cold shock protein [Mesorhizobium loti MAFF303099]
gi|14021197|dbj|BAB47810.1| cold shock protein [Mesorhizobium loti MAFF303099]
Length = 181
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 79/173 (45%), Gaps = 14/173 (8%)
Query: 5 EIHTVRGIVKFYDSKRGFGFITRLDNKE-DIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
++ + G +K++D +G+GFI D DI +H + + + FQ+ G V +
Sbjct: 11 DLTEIAGAIKWFDVAKGYGFILPDDGVSGDILLHVTCL----RRDGFQTALEGARVVCLV 66
Query: 64 GVGKKDIEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGF 123
G + ++A V + + P E + + + P R +VK+++ +GF
Sbjct: 67 KQGDRGLQAFRVLSMD-VTTAVHPAEMQEQRT----HVAVTPESGLERALVKWFNRTKGF 121
Query: 124 GFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINV 176
GF+TR + EDIFVH ++ + L G++V G G K + A +
Sbjct: 122 GFLTRGEGTEDIFVHMETLRRYG----ITELRPGQVVLVRFGRGDKGLMAAEI 170
>gi|217976738|ref|YP_002360885.1| cold-shock DNA-binding domain-containing protein [Methylocella
silvestris BL2]
gi|217502114|gb|ACK49523.1| cold-shock DNA-binding domain protein [Methylocella silvestris BL2]
Length = 189
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 74/171 (43%), Gaps = 21/171 (12%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+ G +K++D +G+GFIT D D+ +H V + + + + G + K
Sbjct: 26 ISGEIKWFDVAKGYGFITPDDGGPDVLLH----VTILRRDGYAAAHEGARIVCEAARRAK 81
Query: 69 DIEAINVT---GPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGF 125
++ + + P P +G P++ S F V +VK+++ +GFGF
Sbjct: 82 GLQVLKINSMDAPPTRPCEGRPRTHVHVAP-----SSGFEIV-----VVKWFNRMKGFGF 131
Query: 126 ITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINV 176
+TR D EDIF+H ++ L GE + G G K + A V
Sbjct: 132 LTRGDGTEDIFIHMETLRHYG----IGELRPGESLLVRFGDGPKGLMAAEV 178
>gi|319898944|ref|YP_004159037.1| cold shock protein [Bartonella clarridgeiae 73]
gi|319402908|emb|CBI76459.1| cold shock protein [Bartonella clarridgeiae 73]
Length = 193
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 84/192 (43%), Gaps = 39/192 (20%)
Query: 5 EIHTVRGIVKFYDSKRGFGFIT-RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
EI + G++K++D +G+GFI + DI +H V + + FQ+ G V +
Sbjct: 24 EIIEISGVIKWFDGSKGYGFIVPDFSDLPDILLH----VTVMRRDGFQTALEGAKVVCVV 79
Query: 64 GVGKKDIEAINV--------TGPNGIPVQG----APKSSSETVSGTYRNDSFFPAVHTVR 111
++ ++ I V T P+ IP + P+S E R
Sbjct: 80 KQTERGLKCIQVKSIDCSSATHPSEIPARTHVVVIPESGLE------------------R 121
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 171
IVK+++ ++GFGF++R EDIF+H ++ + L G++V G G+K +
Sbjct: 122 AIVKWFNREKGFGFLSRGQGTEDIFIHMETLRRFG----LAELRSGQVVLVRFGKGEKGL 177
Query: 172 EAINVTGPNGIP 183
+ +P
Sbjct: 178 MTAEIYPDIALP 189
>gi|393767615|ref|ZP_10356161.1| cold-shock DNA-binding domain-containing protein [Methylobacterium
sp. GXF4]
gi|392726878|gb|EIZ84197.1| cold-shock DNA-binding domain-containing protein [Methylobacterium
sp. GXF4]
Length = 201
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 74/173 (42%), Gaps = 13/173 (7%)
Query: 4 FEIHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
++ V G +K++D +GFGFI D DI +H + + + FQ+ G +
Sbjct: 31 LDLVEVSGRIKWFDVSKGFGFIVPDDGAPDILLHVTCLRRDG----FQAASEGARIVVEA 86
Query: 64 GVGKKDIEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGF 123
+ +A V + Q A SE + + S P +VK+++ RGF
Sbjct: 87 VERPRGWQAFRVLSLD----QSAALHPSE-MPMPRTHVSVTPTSGLETAVVKWFNRLRGF 141
Query: 124 GFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINV 176
GF+TR D DIFVH ++ + L G+ V G G K + A +
Sbjct: 142 GFLTRGDGTPDIFVHMETLRRYG----IAELKPGDAVLVRYGDGSKGVMAAEI 190
>gi|192291180|ref|YP_001991785.1| cold-shock DNA-binding domain-containing protein [Rhodopseudomonas
palustris TIE-1]
gi|192284929|gb|ACF01310.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris
TIE-1]
Length = 235
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 79/177 (44%), Gaps = 17/177 (9%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDF-NIGVGK 67
+ G++K++D+ +G+GF+ + D+ +H + + + + ++ G +V+ G
Sbjct: 69 ISGVIKWFDASKGYGFVVPDNGWPDVLLHVTVLRRDGYQTAYE--GARIVVECVQRAKGY 126
Query: 68 KDIEAINVTGPNGI-PVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFI 126
+ +++ I P Q P + +V+ P R VK+++ RGFGF+
Sbjct: 127 QAFRIVSMDESTAIHPAQMLPARTHVSVT---------PTSGLERAQVKWFNRLRGFGFL 177
Query: 127 TRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIP 183
T + DIFVH ++ + L G+ V G G K + A + NG P
Sbjct: 178 TCGEGTPDIFVHMETLRRYG----MTELRPGQYVLVRFGPGSKGMMAAEIQPENGAP 230
>gi|224000840|ref|XP_002290092.1| cold-shock DNA-binding domain-containing protein [Thalassiosira
pseudonana CCMP1335]
gi|220973514|gb|EED91844.1| cold-shock DNA-binding domain-containing protein, partial
[Thalassiosira pseudonana CCMP1335]
Length = 72
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 46/76 (60%), Gaps = 5/76 (6%)
Query: 117 YDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK-DIEAIN 175
+D+ +GFGFI D +D+FVH++SI + F+SL E V+F + + A++
Sbjct: 1 FDTAKGFGFIVPDDGTKDVFVHQTSI----KVEGFRSLAENEAVEFRVETDTNGRLRALD 56
Query: 176 VTGPNGIPVQGAPKVP 191
VTGP+G VQGAP P
Sbjct: 57 VTGPDGSDVQGAPFNP 72
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 5/73 (6%)
Query: 16 YDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK-DIEAIN 74
+D+ +GFGFI D +D+FVH++SI + F+SL E V+F + + A++
Sbjct: 1 FDTAKGFGFIVPDDGTKDVFVHQTSI----KVEGFRSLAENEAVEFRVETDTNGRLRALD 56
Query: 75 VTGPNGIPVQGAP 87
VTGP+G VQGAP
Sbjct: 57 VTGPDGSDVQGAP 69
>gi|456355317|dbj|BAM89762.1| putative cold shock protein, DNA binding, CspA-like protein
[Agromonas oligotrophica S58]
Length = 217
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 77/176 (43%), Gaps = 17/176 (9%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDF-NIGVGKKD 69
G++K++D+ +G+GFI + DI +H + + + + ++ L +V+ G +
Sbjct: 53 GVIKWFDASKGYGFIVPDNGWPDILLHVTVLRRDGYQTAYEGARL--VVECVQRAKGYQA 110
Query: 70 IEAINVTGPNGI-PVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFITR 128
+++ I P Q P + TV+ P R VK+++ RGFGF+T
Sbjct: 111 FRIVSMDESTAIHPAQMLPPRTHVTVT---------PTSGLERAQVKWFNRLRGFGFVTC 161
Query: 129 LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPV 184
+ DIFVH ++ + L G+ V G G K + A + G P
Sbjct: 162 GEGSPDIFVHMETLRRFG----MTELRPGQWVLVRYGPGSKGMMAAEIHPETGSPA 213
Score = 38.9 bits (89), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 9/83 (10%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 69
R VK+++ RGFGF+T + DIFVH ++ + L G+ V G G K
Sbjct: 144 RAQVKWFNRLRGFGFVTCGEGSPDIFVHMETLRRFG----MTELRPGQWVLVRYGPGSKG 199
Query: 70 IEAINVTGPNGIPVQGAPKSSSE 92
+ A + P G+P SS
Sbjct: 200 MMAAEIH-----PETGSPALSSH 217
>gi|114554895|ref|XP_513232.2| PREDICTED: protein lin-28 homolog A isoform 2 [Pan troglodytes]
Length = 209
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 11/87 (12%)
Query: 112 GIVKFYDSKRGFGFIT-------RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 164
GI K+++ + GFGF+ LD D+FVH+S + F+SL GE V+F
Sbjct: 42 GICKWFNVRMGFGFLCMTARAGVALDPHRDVFVHQSKLHMEG----FRSLKEGEAVEFTF 97
Query: 165 GVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP G+ G+ + P
Sbjct: 98 KKSAKGLESIRVTGPGGVFCIGSERRP 124
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 11/78 (14%)
Query: 11 GIVKFYDSKRGFGFIT-------RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
GI K+++ + GFGF+ LD D+FVH+S + F+SL GE V+F
Sbjct: 42 GICKWFNVRMGFGFLCMTARAGVALDPHRDVFVHQSKLHMEG----FRSLKEGEAVEFTF 97
Query: 64 GVGKKDIEAINVTGPNGI 81
K +E+I VTGP G+
Sbjct: 98 KKSAKGLESIRVTGPGGV 115
>gi|365895158|ref|ZP_09433282.1| putative Cold shock protein, DNA binding, CspA-like [Bradyrhizobium
sp. STM 3843]
gi|365424132|emb|CCE05824.1| putative Cold shock protein, DNA binding, CspA-like [Bradyrhizobium
sp. STM 3843]
Length = 217
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 77/178 (43%), Gaps = 17/178 (9%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGL-GEIVDFNIGVGK 67
+ G++K++D+ +G+GFI + D+ +H + + + + ++ L E V G
Sbjct: 51 ISGVIKWFDASKGYGFIVPDNGWPDVLLHVTVLRRDGYQTAYEGARLVCECV--QRAKGY 108
Query: 68 KDIEAINVTGPNGI-PVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFI 126
+ +++ I P Q P + TV+ P R VK+++ RGFGF+
Sbjct: 109 QAFRIVSMDESTAIHPAQMLPPRTHVTVT---------PTSGLERAQVKWFNRLRGFGFV 159
Query: 127 TRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPV 184
T + DIFVH ++ + L G+ V G G K + A + G P
Sbjct: 160 TCGEGTPDIFVHMETLRRFG----MTELRPGQYVLVRYGPGSKGMMAAEIHPETGSPA 213
>gi|193788570|ref|NP_001123330.1| zinc finger protein ZF(CCHC)-17 [Ciona intestinalis]
gi|93003148|tpd|FAA00157.1| TPA: zinc finger protein [Ciona intestinalis]
Length = 193
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 46/82 (56%), Gaps = 7/82 (8%)
Query: 112 GIVKFYDSKRGFGFIT---RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGK 168
G K+++SK+G+GFIT K D+FVH+SSI F+SL G+ V F K
Sbjct: 29 GNCKWFNSKQGYGFITPDTSSQEKTDVFVHQSSIDMEG----FRSLQEGDRVKFWYKPSK 84
Query: 169 KDIEAINVTGPNGIPVQGAPKV 190
K +EA+ V GP G + GA +
Sbjct: 85 KGLEAVKVVGPGGEKLVGAERT 106
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 7/82 (8%)
Query: 11 GIVKFYDSKRGFGFIT---RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGK 67
G K+++SK+G+GFIT K D+FVH+SSI F+SL G+ V F K
Sbjct: 29 GNCKWFNSKQGYGFITPDTSSQEKTDVFVHQSSIDMEG----FRSLQEGDRVKFWYKPSK 84
Query: 68 KDIEAINVTGPNGIPVQGAPKS 89
K +EA+ V GP G + GA ++
Sbjct: 85 KGLEAVKVVGPGGEKLVGAERT 106
>gi|77736623|ref|NP_001029990.1| protein lin-28 homolog B [Gallus gallus]
gi|116248186|sp|Q45KJ4.1|LN28B_CHICK RecName: Full=Protein lin-28 homolog B; Short=Lin-28B
gi|71724932|gb|AAZ38896.1| LIN28B [Gallus gallus]
Length = 250
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 11/87 (12%)
Query: 112 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 164
G K+++ + GFGFI+ L++ D+FVH+S + F+SL GE V+F
Sbjct: 32 GHCKWFNVRMGFGFISMSSREGSPLESPVDVFVHQSKLYMEG----FRSLKEGEPVEFTY 87
Query: 165 GVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP G P G+ + P
Sbjct: 88 KKSSKGLESIRVTGPGGSPCLGSERRP 114
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 11/83 (13%)
Query: 11 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
G K+++ + GFGFI+ L++ D+FVH+S + F+SL GE V+F
Sbjct: 32 GHCKWFNVRMGFGFISMSSREGSPLESPVDVFVHQSKLYMEG----FRSLKEGEPVEFTY 87
Query: 64 GVGKKDIEAINVTGPNGIPVQGA 86
K +E+I VTGP G P G+
Sbjct: 88 KKSSKGLESIRVTGPGGSPCLGS 110
>gi|338974584|ref|ZP_08629942.1| cold shock protein CspB [Bradyrhizobiaceae bacterium SG-6C]
gi|414166940|ref|ZP_11423170.1| hypothetical protein HMPREF9696_01025 [Afipia clevelandensis ATCC
49720]
gi|338232179|gb|EGP07311.1| cold shock protein CspB [Bradyrhizobiaceae bacterium SG-6C]
gi|410892218|gb|EKS40013.1| hypothetical protein HMPREF9696_01025 [Afipia clevelandensis ATCC
49720]
Length = 220
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 77/177 (43%), Gaps = 17/177 (9%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLG-EIVDFNIGVGK 67
+ G++K++D+ +G+GFI + D+ +H + + + + ++ L E V G
Sbjct: 54 ISGVIKWFDASKGYGFIVPDNGAADVLLHVTVLRRDGYQTAYEGARLVVECVQRQKGY-- 111
Query: 68 KDIEAINVTGPNGI-PVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFI 126
+ +++ I P Q P + +V+ P R VK+++ RGFGF+
Sbjct: 112 QAFRVVSMDESTAIHPAQMLPARTHVSVT---------PTSGLERAQVKWFNRLRGFGFL 162
Query: 127 TRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIP 183
T + DIFVH ++ + L G+ V G G K + A + G P
Sbjct: 163 TCGEGTPDIFVHMETLRRYG----MTELRPGQYVLVRFGPGSKGMMAAEIQPETGAP 215
>gi|345482606|ref|XP_001607820.2| PREDICTED: hypothetical protein LOC100124010 [Nasonia vitripennis]
Length = 318
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 56/119 (47%), Gaps = 36/119 (30%)
Query: 6 IHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGV 65
+ V G VK+++ K G+GFI R K +S+G GE+V+F++ +
Sbjct: 66 ANKVTGTVKWFNVKSGYGFINR-------------------SKAVRSVGDGEVVEFDVVI 106
Query: 66 GKKDIEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFG 124
G+K EA NVTGP+G V+G+P A RG ++Y+ + G G
Sbjct: 107 GEKGNEAANVTGPDGEAVKGSPY-----------------AADKRRGYRQYYNRRGGSG 148
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 19/82 (23%)
Query: 107 VHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGV 166
+ V G VK+++ K G+GFI R K +S+G GE+V+F++ +
Sbjct: 66 ANKVTGTVKWFNVKSGYGFINR-------------------SKAVRSVGDGEVVEFDVVI 106
Query: 167 GKKDIEAINVTGPNGIPVQGAP 188
G+K EA NVTGP+G V+G+P
Sbjct: 107 GEKGNEAANVTGPDGEAVKGSP 128
>gi|163868307|ref|YP_001609516.1| cold shock protein [Bartonella tribocorum CIP 105476]
gi|161017963|emb|CAK01521.1| cold shock protein [Bartonella tribocorum CIP 105476]
Length = 191
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 82/192 (42%), Gaps = 39/192 (20%)
Query: 5 EIHTVRGIVKFYDSKRGFGFIT-RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
EI + G++K++D +G+GFI L + DI +H V + + FQ+ G V +
Sbjct: 22 EIIEISGVIKWFDGSKGYGFIVPDLPHFPDILLH----VTVMRRDGFQTAMEGAKVICAV 77
Query: 64 --------GVGKKDIEAINVTGPNGIPVQG----APKSSSETVSGTYRNDSFFPAVHTVR 111
V K I+ + P+ +P + P+S E R
Sbjct: 78 EKTERGLKCVQVKSIDCSSAVHPSEVPARTHVVVTPESGLE------------------R 119
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 171
IVK+++ +GFGF++R EDIF+H ++ + L G++V G G+K +
Sbjct: 120 AIVKWFNRDKGFGFLSRGQGTEDIFIHMETLRRFG----LAELRSGQVVLVRFGKGEKGL 175
Query: 172 EAINVTGPNGIP 183
+ G P
Sbjct: 176 MTAEIYPDIGFP 187
>gi|39935591|ref|NP_947867.1| cold-shock DNA-binding domain-containing protein [Rhodopseudomonas
palustris CGA009]
gi|39649444|emb|CAE27966.1| cold shock DNA binding protein [Rhodopseudomonas palustris CGA009]
Length = 235
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 79/177 (44%), Gaps = 17/177 (9%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDF-NIGVGK 67
+ G++K++D+ +G+GF+ + D+ +H + + + + ++ G +V+ G
Sbjct: 69 ISGVIKWFDASKGYGFVVPDNGWPDVLLHVTVLRRDGYQTAYE--GARIVVECVQRAKGY 126
Query: 68 KDIEAINVTGPNGI-PVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFI 126
+ +++ I P Q P + +V+ P R VK+++ RGFGF+
Sbjct: 127 QAFRIVSMDESTAIHPAQMLPARTHVSVT---------PTSGLERAQVKWFNRLRGFGFL 177
Query: 127 TRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIP 183
T + DIFVH ++ + L G+ V G G K + A + NG P
Sbjct: 178 TCGEGTPDIFVHMETLRRYG----MTELRPGQYVLVRFGPGSKGMMAAEIQPENGAP 230
>gi|157105290|ref|XP_001648803.1| RNA-binding protein lin-28 [Aedes aegypti]
gi|108880147|gb|EAT44372.1| AAEL004259-PA, partial [Aedes aegypti]
Length = 157
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 48/77 (62%), Gaps = 4/77 (5%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 69
RG+ K+++ +G+GFIT D +D+FVH+ S+++M + F+SLG E V+F + K
Sbjct: 2 RGLCKWFNVIKGWGFITPDDGGQDVFVHQ-SVLQM---EGFRSLGQNEPVEFEAKLTDKG 57
Query: 70 IEAINVTGPNGIPVQGA 86
EA V GP+ +G+
Sbjct: 58 YEATKVYGPSQSQCKGS 74
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 48/77 (62%), Gaps = 4/77 (5%)
Query: 111 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 170
RG+ K+++ +G+GFIT D +D+FVH+ S+++M + F+SLG E V+F + K
Sbjct: 2 RGLCKWFNVIKGWGFITPDDGGQDVFVHQ-SVLQM---EGFRSLGQNEPVEFEAKLTDKG 57
Query: 171 IEAINVTGPNGIPVQGA 187
EA V GP+ +G+
Sbjct: 58 YEATKVYGPSQSQCKGS 74
>gi|27379521|ref|NP_771050.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
gi|27352673|dbj|BAC49675.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
Length = 224
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 75/179 (41%), Gaps = 21/179 (11%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G++K++D+ +G+GFI + D+ +H V + + FQ+ G + K
Sbjct: 58 VHGVIKWFDASKGYGFIVPDNGWPDVLLH----VTVLRRDGFQTAYEGARIVVECIQRAK 113
Query: 69 DIEAINVTGPNGI----PVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFG 124
+A V + P Q P + TV+ P R VK+++ RGFG
Sbjct: 114 GYQAFRVVSMDESTAIHPAQMLPPRTHVTVT---------PTSGLERAQVKWFNRLRGFG 164
Query: 125 FITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIP 183
F+T + DIFVH ++ + L G+ V G G K + A + G P
Sbjct: 165 FLTCGEGTPDIFVHMETLRRFG----MTELRPGQYVLVRFGPGSKGMMAAEIHPETGSP 219
>gi|449454351|ref|XP_004144919.1| PREDICTED: glycine-rich protein 2-like [Cucumis sativus]
Length = 230
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 49/79 (62%), Gaps = 9/79 (11%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGV--- 65
V G VK++ ++G+GFI+ D ED+FVH+SSI F+SLG+GE V+F I
Sbjct: 32 VSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSI----RSDGFRSLGVGEDVEFLIEAESD 87
Query: 66 GKKDIEAINVTGPNGIPVQ 84
G+ +A++VTGP VQ
Sbjct: 88 GRS--KAVDVTGPGEASVQ 104
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 49/79 (62%), Gaps = 9/79 (11%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGV--- 166
V G VK++ ++G+GFI+ D ED+FVH+SSI F+SLG+GE V+F I
Sbjct: 32 VSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSI----RSDGFRSLGVGEDVEFLIEAESD 87
Query: 167 GKKDIEAINVTGPNGIPVQ 185
G+ +A++VTGP VQ
Sbjct: 88 GRS--KAVDVTGPGEASVQ 104
>gi|297677568|ref|XP_002816670.1| PREDICTED: protein lin-28 homolog A-like [Pongo abelii]
Length = 277
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 11/87 (12%)
Query: 112 GIVKFYDSKRGFGFIT-------RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 164
GI K+++ + GFGF++ LD+ D+FVH+S + + F+SL GE V+F
Sbjct: 110 GICKWFNVRMGFGFLSMTARAGVTLDSPVDVFVHQSKLHM----ERFRSLKEGEAVEFTF 165
Query: 165 GVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP G+ G+ + P
Sbjct: 166 KKSAKGLESIRVTGPGGVFCIGSERRP 192
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 11/78 (14%)
Query: 11 GIVKFYDSKRGFGFIT-------RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
GI K+++ + GFGF++ LD+ D+FVH+S + + F+SL GE V+F
Sbjct: 110 GICKWFNVRMGFGFLSMTARAGVTLDSPVDVFVHQSKLHM----ERFRSLKEGEAVEFTF 165
Query: 64 GVGKKDIEAINVTGPNGI 81
K +E+I VTGP G+
Sbjct: 166 KKSAKGLESIRVTGPGGV 183
>gi|119628220|gb|EAX07815.1| lin-28 homolog (C. elegans), isoform CRA_b [Homo sapiens]
Length = 214
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 14/91 (15%)
Query: 112 GIVKFYDSKRGFGFIT-------RLDNKEDIFVHKSSIVKMNPKKF----FQSLGLGEIV 160
GI K+++ + GFGF++ LD D+FVH+ V++ P K F+SL GE V
Sbjct: 42 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQ---VRLIPSKLHMEGFRSLKEGEAV 98
Query: 161 DFNIGVGKKDIEAINVTGPNGIPVQGAPKVP 191
+F K +E+I VTGP G+ G+ + P
Sbjct: 99 EFTFKKSAKGLESIRVTGPGGVFCIGSERRP 129
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 14/82 (17%)
Query: 11 GIVKFYDSKRGFGFIT-------RLDNKEDIFVHKSSIVKMNPKKF----FQSLGLGEIV 59
GI K+++ + GFGF++ LD D+FVH+ V++ P K F+SL GE V
Sbjct: 42 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQ---VRLIPSKLHMEGFRSLKEGEAV 98
Query: 60 DFNIGVGKKDIEAINVTGPNGI 81
+F K +E+I VTGP G+
Sbjct: 99 EFTFKKSAKGLESIRVTGPGGV 120
>gi|307107809|gb|EFN56051.1| hypothetical protein CHLNCDRAFT_145510 [Chlorella variabilis]
Length = 139
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 5/71 (7%)
Query: 19 KRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIE-AINVTG 77
K G+GFIT ED+FVH+++IV + F+SL GE V+F + + A+NVTG
Sbjct: 11 KWGYGFITPDSGGEDLFVHQTAIV----SEGFRSLREGEPVEFFVETSDDGRQKAVNVTG 66
Query: 78 PNGIPVQGAPK 88
PNG +GAP+
Sbjct: 67 PNGAAPEGAPR 77
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 5/71 (7%)
Query: 120 KRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIE-AINVTG 178
K G+GFIT ED+FVH+++IV + F+SL GE V+F + + A+NVTG
Sbjct: 11 KWGYGFITPDSGGEDLFVHQTAIV----SEGFRSLREGEPVEFFVETSDDGRQKAVNVTG 66
Query: 179 PNGIPVQGAPK 189
PNG +GAP+
Sbjct: 67 PNGAAPEGAPR 77
>gi|150020181|ref|YP_001305535.1| cold-shock DNA-binding domain-containing protein [Thermosipho
melanesiensis BI429]
gi|149792702|gb|ABR30150.1| putative cold-shock DNA-binding domain protein [Thermosipho
melanesiensis BI429]
Length = 65
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 45/67 (67%), Gaps = 5/67 (7%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
++G VK++D+K+G+GFIT+ D EDIFVH S+I F++L G+ V+F + G+K
Sbjct: 1 MKGTVKWFDAKKGYGFITKEDG-EDIFVHWSAIQTEG----FKTLKEGQEVEFEVQDGQK 55
Query: 69 DIEAINV 75
+A NV
Sbjct: 56 GPQAANV 62
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 45/67 (67%), Gaps = 5/67 (7%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
++G VK++D+K+G+GFIT+ D EDIFVH S+I F++L G+ V+F + G+K
Sbjct: 1 MKGTVKWFDAKKGYGFITKEDG-EDIFVHWSAIQTEG----FKTLKEGQEVEFEVQDGQK 55
Query: 170 DIEAINV 176
+A NV
Sbjct: 56 GPQAANV 62
>gi|407780540|ref|ZP_11127767.1| cold-shock DNA-binding domain-containing protein [Nitratireductor
pacificus pht-3B]
gi|407297661|gb|EKF16826.1| cold-shock DNA-binding domain-containing protein [Nitratireductor
pacificus pht-3B]
Length = 198
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 82/183 (44%), Gaps = 34/183 (18%)
Query: 5 EIHTVRGIVKFYDSKRGFGFITRLDNKE---DIFVHKSSIVKMNPKKFFQSLGLGEIVDF 61
E+ + G +K++D +G+GFI L ++ D+ +H + + K FQ+ G V+
Sbjct: 28 ELIEISGAIKWFDVAKGYGFI--LPDEAGIGDVLLHVTCLRKDG----FQTALEGARVEC 81
Query: 62 NIGVGKKDIEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTV--------RGI 113
+ G+K +A V S + + + + P H V R +
Sbjct: 82 LVRQGEKGFQAFKVL-------------SVDLSTAVHPVEDQSPRTHVVVTPDSGLERAL 128
Query: 114 VKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEA 173
VK+++ +GFGF+TR + EDIFVH ++ + L G++V G G K + A
Sbjct: 129 VKWFNRTKGFGFLTRGEGTEDIFVHMETLRRYG----ITELRPGQVVLVRFGRGDKGLMA 184
Query: 174 INV 176
+
Sbjct: 185 AEI 187
>gi|188584960|ref|YP_001916505.1| cold-shock DNA-binding protein family [Natranaerobius
thermophilus JW/NM-WN-LF]
gi|179349647|gb|ACB83917.1| cold-shock DNA-binding protein family [Natranaerobius
thermophilus JW/NM-WN-LF]
Length = 68
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 45/67 (67%), Gaps = 4/67 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+RG VK++D K+G+GFI + D+ ED+FVH S+I ++ F++L G+ V+F + G K
Sbjct: 1 MRGTVKWFDPKKGYGFIEKEDDGEDVFVHFSAI----QQEGFKTLEEGQKVEFEVTQGDK 56
Query: 69 DIEAINV 75
+A NV
Sbjct: 57 GPQAENV 63
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 45/67 (67%), Gaps = 4/67 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+RG VK++D K+G+GFI + D+ ED+FVH S+I ++ F++L G+ V+F + G K
Sbjct: 1 MRGTVKWFDPKKGYGFIEKEDDGEDVFVHFSAI----QQEGFKTLEEGQKVEFEVTQGDK 56
Query: 170 DIEAINV 176
+A NV
Sbjct: 57 GPQAENV 63
>gi|120555865|ref|YP_960216.1| cold-shock DNA-binding domain-containing protein [Marinobacter
aquaeolei VT8]
gi|120325714|gb|ABM20029.1| cold shock protein E (CspE) [Marinobacter aquaeolei VT8]
Length = 68
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 46/72 (63%), Gaps = 5/72 (6%)
Query: 6 IHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGV 65
+ T++G VKF++ +GFGFITR +N D+FVH SSI F++L G+ V+F +
Sbjct: 1 MSTIKGNVKFFNEAKGFGFITR-ENGADVFVHYSSIQGGG----FKTLAEGQEVEFTVTE 55
Query: 66 GKKDIEAINVTG 77
G+K +A NV G
Sbjct: 56 GQKGPQAENVIG 67
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 46/72 (63%), Gaps = 5/72 (6%)
Query: 107 VHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGV 166
+ T++G VKF++ +GFGFITR +N D+FVH SSI F++L G+ V+F +
Sbjct: 1 MSTIKGNVKFFNEAKGFGFITR-ENGADVFVHYSSIQGGG----FKTLAEGQEVEFTVTE 55
Query: 167 GKKDIEAINVTG 178
G+K +A NV G
Sbjct: 56 GQKGPQAENVIG 67
>gi|148255425|ref|YP_001240010.1| cold-shock DNA-binding protein family protein [Bradyrhizobium sp.
BTAi1]
gi|146407598|gb|ABQ36104.1| cold-shock DNA-binding protein family [Bradyrhizobium sp. BTAi1]
Length = 217
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 78/178 (43%), Gaps = 17/178 (9%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDF-NIGVGK 67
+ G++K++D+ +G+GFI + D+ +H + + + + ++ L +V+ G
Sbjct: 51 ISGVIKWFDASKGYGFIVPDNGWPDVLLHVTVLRRDGYQTAYEGARL--VVECVQRAKGY 108
Query: 68 KDIEAINVTGPNGI-PVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFI 126
+ +++ I P Q P + TV+ P R VK+++ RGFGF+
Sbjct: 109 QAFRIVSMDESTAIHPAQMLPPRTHVTVT---------PTSGLERAQVKWFNRLRGFGFV 159
Query: 127 TRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPV 184
T + DIFVH ++ + L G+ V G G K + A + G P
Sbjct: 160 TCGEGTPDIFVHMETLRRFG----MTELRPGQWVLVRYGPGSKGMMAAEIHPETGSPA 213
>gi|383772027|ref|YP_005451093.1| cold shock protein [Bradyrhizobium sp. S23321]
gi|381360151|dbj|BAL76981.1| cold shock protein [Bradyrhizobium sp. S23321]
Length = 220
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 76/179 (42%), Gaps = 21/179 (11%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G++K++D+ +G+GFI + D+ +H V + + FQ+ G + K
Sbjct: 54 VHGVIKWFDASKGYGFIVPDNGWPDVLLH----VTVLRRDGFQTAYEGARIVVECIQRAK 109
Query: 69 DIEAINVTGPNGI----PVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFG 124
+A V + P Q P + TV+ T + R VK+++ RGFG
Sbjct: 110 GYQAFRVVSMDESTAIHPAQMLPPRTHVTVTATSGLE---------RAQVKWFNRLRGFG 160
Query: 125 FITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIP 183
F+T + DIFVH ++ + L G+ V G G K + A + G P
Sbjct: 161 FLTCGEGTPDIFVHMETLRRFG----MTELRPGQYVLVRFGPGSKGMMAAEIHPETGSP 215
>gi|358413778|ref|XP_612469.6| PREDICTED: protein lin-28 homolog B [Bos taurus]
Length = 287
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 11/87 (12%)
Query: 112 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 164
G K+++ + GFGFI+ LD D+FVH+S + F+SL GE V+F
Sbjct: 72 GHCKWFNVRMGFGFISMISREGSPLDIPVDVFVHQSKLFMEG----FRSLKEGEPVEFTF 127
Query: 165 GVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP G P G+ + P
Sbjct: 128 KKSSKGLESIRVTGPGGSPCLGSERRP 154
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 11/83 (13%)
Query: 11 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
G K+++ + GFGFI+ LD D+FVH+S + F+SL GE V+F
Sbjct: 72 GHCKWFNVRMGFGFISMISREGSPLDIPVDVFVHQSKLFMEG----FRSLKEGEPVEFTF 127
Query: 64 GVGKKDIEAINVTGPNGIPVQGA 86
K +E+I VTGP G P G+
Sbjct: 128 KKSSKGLESIRVTGPGGSPCLGS 150
>gi|365884847|ref|ZP_09423874.1| putative Cold shock protein, DNA binding, CspA-like [Bradyrhizobium
sp. ORS 375]
gi|365286537|emb|CCD96405.1| putative Cold shock protein, DNA binding, CspA-like [Bradyrhizobium
sp. ORS 375]
Length = 217
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 78/178 (43%), Gaps = 17/178 (9%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDF-NIGVGK 67
+ G++K++D+ +G+GFI + D+ +H + + + + ++ L +V+ G
Sbjct: 51 ISGVIKWFDASKGYGFIVPDNGWPDVLLHVTVLRRDGYQTAYEGARL--VVECVQRAKGY 108
Query: 68 KDIEAINVTGPNGI-PVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFI 126
+ +++ I P Q P + TV+ P R VK+++ RGFGF+
Sbjct: 109 QAFRIVSMDESTAIHPAQMLPPRTHVTVT---------PTSGLERAQVKWFNRLRGFGFV 159
Query: 127 TRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPV 184
T + DIFVH ++ + L G+ V G G K + A + G P
Sbjct: 160 TCGEGTPDIFVHMETLRRFG----MTELRPGQWVLVRYGPGSKGMMAAEIHPETGSPA 213
>gi|365890179|ref|ZP_09428762.1| putative Cold shock protein, DNA binding, CspA-like [Bradyrhizobium
sp. STM 3809]
gi|365334005|emb|CCE01293.1| putative Cold shock protein, DNA binding, CspA-like [Bradyrhizobium
sp. STM 3809]
Length = 217
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 78/178 (43%), Gaps = 17/178 (9%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDF-NIGVGK 67
+ G++K++D+ +G+GFI + D+ +H + + + + ++ L +V+ G
Sbjct: 51 ISGVIKWFDASKGYGFIVPDNGWPDVLLHVTVLRRDGYQTAYEGARL--VVECVQRAKGY 108
Query: 68 KDIEAINVTGPNGI-PVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFI 126
+ +++ I P Q P + TV+ P R VK+++ RGFGF+
Sbjct: 109 QAFRIVSMDESTAIHPAQMLPPRTHVTVT---------PTSGLERAQVKWFNRLRGFGFV 159
Query: 127 TRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPV 184
T + DIFVH ++ + L G+ V G G K + A + G P
Sbjct: 160 TCGEGTPDIFVHMETLRRFG----MTELRPGQWVLVRYGPGSKGMMAAEIHPETGSPA 213
>gi|158425669|ref|YP_001526961.1| cold shock protein [Azorhizobium caulinodans ORS 571]
gi|158332558|dbj|BAF90043.1| cold shock protein [Azorhizobium caulinodans ORS 571]
Length = 237
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 77/178 (43%), Gaps = 20/178 (11%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+ VK+++ ++GFGF+ D D+F+H ++ +S+ G + +G G+K
Sbjct: 66 IEATVKWFNPEKGFGFVELSDGSGDVFLHARALEAAG----QESVPPGSKLSVRVGQGQK 121
Query: 69 DIEAINVTGPNGIPVQGAPKSSSETV----------SGTYRNDSFFPAVHTVRGIVKFYD 118
+ V + + AP + SG R S P V G VK+Y+
Sbjct: 122 GRQVTEVLEVDTSTAEAAPPRRAPAGPGGFGGGAPRSGGPRAASG-PTEERV-GTVKWYN 179
Query: 119 SKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINV 176
++GFGFI +D+FVH + + + L G+ V +G G K EA +
Sbjct: 180 PEKGFGFIAVEGGGKDVFVHVTVVSRSG----LADLSEGQRVVVQVGQGPKGPEARGI 233
>gi|146340625|ref|YP_001205673.1| DNA binding cold shock protein, CspA-like [Bradyrhizobium sp. ORS
278]
gi|146193431|emb|CAL77447.1| Putative Cold shock protein, DNA binding, CspA-like [Bradyrhizobium
sp. ORS 278]
Length = 217
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 78/178 (43%), Gaps = 17/178 (9%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDF-NIGVGK 67
+ G++K++D+ +G+GFI + D+ +H + + + + ++ L +V+ G
Sbjct: 51 ISGVIKWFDASKGYGFIVPDNGWPDVLLHVTVLRRDGYQTAYEGARL--VVECVQRAKGY 108
Query: 68 KDIEAINVTGPNGI-PVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFI 126
+ +++ I P Q P + TV+ P R VK+++ RGFGF+
Sbjct: 109 QAFRIVSMDESTAIHPAQMLPPRTHVTVT---------PTSGLERAQVKWFNRLRGFGFV 159
Query: 127 TRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPV 184
T + DIFVH ++ + L G+ V G G K + A + G P
Sbjct: 160 TCGEGTPDIFVHMETLRRFG----MTELRPGQWVLVRYGPGSKGMMAAEIHPETGSPA 213
>gi|147903687|ref|NP_001080918.1| protein lin-28 homolog A [Xenopus laevis]
gi|82243501|sp|Q8JHC4.1|LN28A_XENLA RecName: Full=Protein lin-28 homolog A; Short=Lin-28A
gi|21842301|gb|AAM77750.1|AF521098_1 RNA-binding protein LIN-28A [Xenopus laevis]
gi|213623350|gb|AAI69625.1| RNA-binding protein LIN-28A [Xenopus laevis]
gi|213626540|gb|AAI69597.1| RNA-binding protein LIN-28A [Xenopus laevis]
Length = 195
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 11/87 (12%)
Query: 112 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 164
G+ K+++ + GFGF+T L+ D+FVH+S + + F+SL GE V+F
Sbjct: 36 GVCKWFNVRMGFGFLTMTKKEGTDLETPLDVFVHQSKLHM----EGFRSLKEGESVEFTF 91
Query: 165 GVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+ VTGP G P G+ + P
Sbjct: 92 KKSSKGLESTQVTGPGGAPCIGSERRP 118
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 11/85 (12%)
Query: 11 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
G+ K+++ + GFGF+T L+ D+FVH+S + + F+SL GE V+F
Sbjct: 36 GVCKWFNVRMGFGFLTMTKKEGTDLETPLDVFVHQSKLHM----EGFRSLKEGESVEFTF 91
Query: 64 GVGKKDIEAINVTGPNGIPVQGAPK 88
K +E+ VTGP G P G+ +
Sbjct: 92 KKSSKGLESTQVTGPGGAPCIGSER 116
>gi|395534688|ref|XP_003769371.1| PREDICTED: protein lin-28 homolog B [Sarcophilus harrisii]
Length = 311
Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 11/87 (12%)
Query: 112 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 164
G K+++ + GFGFI+ LD D+FVH+S + F+SL GE V+F
Sbjct: 93 GHCKWFNVRMGFGFISMINREGSPLDVPVDVFVHQSKLYMEG----FRSLKEGEPVEFTF 148
Query: 165 GVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP G P G+ + P
Sbjct: 149 KKSSKGLESIRVTGPGGSPCLGSERRP 175
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 11/83 (13%)
Query: 11 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
G K+++ + GFGFI+ LD D+FVH+S + F+SL GE V+F
Sbjct: 93 GHCKWFNVRMGFGFISMINREGSPLDVPVDVFVHQSKLYMEG----FRSLKEGEPVEFTF 148
Query: 64 GVGKKDIEAINVTGPNGIPVQGA 86
K +E+I VTGP G P G+
Sbjct: 149 KKSSKGLESIRVTGPGGSPCLGS 171
>gi|407787832|ref|ZP_11134970.1| cold-shock DNA-binding domain-containing protein [Celeribacter
baekdonensis B30]
gi|407198777|gb|EKE68805.1| cold-shock DNA-binding domain-containing protein [Celeribacter
baekdonensis B30]
Length = 183
Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 78/173 (45%), Gaps = 19/173 (10%)
Query: 8 TVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQS-LGLGEIVDFNIGVG 66
V G VK++D RGFGF+ + DI +H + + + F QS + ++ ++
Sbjct: 9 VVSGHVKWFDPTRGFGFVVSDEGGPDILLHANVL-----RNFGQSSVADAALIRLSVQET 63
Query: 67 KKDIEAINVTGPNGIPVQ--GAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFG 124
+ ++AI V G PVQ G E V G + PA VK++D +GFG
Sbjct: 64 DRGVQAIEVLGIE-PPVQSDGPMLEDLEQVDGGGLDLPLEPAR------VKWFDKGKGFG 116
Query: 125 FITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVT 177
F ED+FVH +++ + L GE + + G++ A +VT
Sbjct: 117 FANVFGRPEDVFVH----IEVLRRSGLADLMPGEAIGLRVIEGRRGRMAAHVT 165
>gi|90419542|ref|ZP_01227452.1| cold shock family protein [Aurantimonas manganoxydans SI85-9A1]
gi|90336479|gb|EAS50220.1| cold shock family protein [Aurantimonas manganoxydans SI85-9A1]
Length = 192
Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 81/188 (43%), Gaps = 30/188 (15%)
Query: 6 IHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGV 65
+ + G +K++D +GFGFI D DI +H + + + + G V +
Sbjct: 23 LSVISGHIKWFDVSKGFGFIVPDDGGADILLHVTCLRRDGHATALE----GARVVCEVQQ 78
Query: 66 GKKDIEAINVTG--------PNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFY 117
G++ ++A V P+ +P AP++ S + + V +VK++
Sbjct: 79 GERGLQAFRVLSMDQSTAVHPSQLP---APRTHSVVTASS----------DLVSAVVKWF 125
Query: 118 DSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVT 177
+ +G+GF+T + EDIF+H ++ + L G+ V G G K A +
Sbjct: 126 NRTKGYGFLTTGEGTEDIFIHMETLRRFG----MTELRPGQDVLVRFGQGDKGRMAAEIH 181
Query: 178 GPNGIPVQ 185
P PVQ
Sbjct: 182 -PGTGPVQ 188
>gi|296484122|tpg|DAA26237.1| TPA: lin-28 homolog B-like [Bos taurus]
Length = 255
Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 11/87 (12%)
Query: 112 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 164
G K+++ + GFGFI+ LD D+FVH+S + F+SL GE V+F
Sbjct: 39 GHCKWFNVRMGFGFISMISREGSPLDIPVDVFVHQSKLFMEG----FRSLKEGEPVEFTF 94
Query: 165 GVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP G P G+ + P
Sbjct: 95 KKSSKGLESIRVTGPGGSPCLGSERRP 121
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 11/83 (13%)
Query: 11 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
G K+++ + GFGFI+ LD D+FVH+S + F+SL GE V+F
Sbjct: 39 GHCKWFNVRMGFGFISMISREGSPLDIPVDVFVHQSKLFMEG----FRSLKEGEPVEFTF 94
Query: 64 GVGKKDIEAINVTGPNGIPVQGA 86
K +E+I VTGP G P G+
Sbjct: 95 KKSSKGLESIRVTGPGGSPCLGS 117
>gi|296198875|ref|XP_002746913.1| PREDICTED: protein lin-28 homolog B isoform 1 [Callithrix jacchus]
Length = 250
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 13/88 (14%)
Query: 112 GIVKFYDSKRGFGFITRLDNKE--------DIFVHKSSIVKMNPKKFFQSLGLGEIVDFN 163
G K+++ + GFGFI+ + N+E D+FVH+S + F+SL GE V+F
Sbjct: 32 GHCKWFNVRMGFGFISMI-NREGSPLDIPVDVFVHQSKLFMEG----FRSLKEGEPVEFT 86
Query: 164 IGVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP G P G+ + P
Sbjct: 87 FKKSSKGLESIRVTGPGGSPCSGSERRP 114
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 13/84 (15%)
Query: 11 GIVKFYDSKRGFGFITRLDNKE--------DIFVHKSSIVKMNPKKFFQSLGLGEIVDFN 62
G K+++ + GFGFI+ + N+E D+FVH+S + F+SL GE V+F
Sbjct: 32 GHCKWFNVRMGFGFISMI-NREGSPLDIPVDVFVHQSKLFMEG----FRSLKEGEPVEFT 86
Query: 63 IGVGKKDIEAINVTGPNGIPVQGA 86
K +E+I VTGP G P G+
Sbjct: 87 FKKSSKGLESIRVTGPGGSPCSGS 110
>gi|317053824|ref|YP_004117849.1| cold-shock DNA-binding domain-containing protein [Pantoea sp.
At-9b]
gi|316951819|gb|ADU71293.1| cold-shock DNA-binding domain protein [Pantoea sp. At-9b]
Length = 70
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 47/69 (68%), Gaps = 4/69 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+RG VK+++S++GFGFI+ + +D+FVH S+I + ++SL G+ V+F++ G+K
Sbjct: 5 IRGTVKWFNSEKGFGFISPENGSKDVFVHYSAIQGTD----YRSLDEGQRVEFSVEDGQK 60
Query: 69 DIEAINVTG 77
A+NV G
Sbjct: 61 GPSAVNVVG 69
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 47/69 (68%), Gaps = 4/69 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+RG VK+++S++GFGFI+ + +D+FVH S+I + ++SL G+ V+F++ G+K
Sbjct: 5 IRGTVKWFNSEKGFGFISPENGSKDVFVHYSAIQGTD----YRSLDEGQRVEFSVEDGQK 60
Query: 170 DIEAINVTG 178
A+NV G
Sbjct: 61 GPSAVNVVG 69
>gi|54303445|ref|YP_133438.1| cold shock protein [Photobacterium profundum SS9]
gi|46916875|emb|CAG23638.1| putative cold shock protein [Photobacterium profundum SS9]
Length = 104
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 54/98 (55%), Gaps = 11/98 (11%)
Query: 86 APKSSSETVSGTYRNDSFFPA-------VHTVRGIVKFYDSKRGFGFITRLDNKEDIFVH 138
A ++ + + S YRN + F + GIVK+++ ++GFGFIT+ + D+FVH
Sbjct: 8 ASRTFNNSTSWQYRNSANFLMNFYKGHIMSNTTGIVKWFNEEKGFGFITQDNGGADVFVH 67
Query: 139 KSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINV 176
+I + F++L G+ V F + G+K ++A NV
Sbjct: 68 FRAI----ASEGFKTLAEGQKVSFEVEQGQKGLQAANV 101
Score = 48.9 bits (115), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 42/65 (64%), Gaps = 4/65 (6%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 70
GIVK+++ ++GFGFIT+ + D+FVH +I + F++L G+ V F + G+K +
Sbjct: 41 GIVKWFNEEKGFGFITQDNGGADVFVHFRAI----ASEGFKTLAEGQKVSFEVEQGQKGL 96
Query: 71 EAINV 75
+A NV
Sbjct: 97 QAANV 101
>gi|47114837|emb|CAE48342.1| unnamed protein product [Methylocystis sp. SC2]
Length = 183
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 76/175 (43%), Gaps = 13/175 (7%)
Query: 2 TKFEIHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDF 61
T E+ V G +K++D +G+GF+ D +DI +H + + + + F+ +
Sbjct: 11 TGLELVEVAGRIKWFDVAKGYGFVVPDDGSDDILLHVTILRRSGMQTAFEGARV------ 64
Query: 62 NIGVGKKDIEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKR 121
+ +K ++ + V + A S T+ P IVK+++ +
Sbjct: 65 -VCEAQKRVKGMQVFRVIAMDESTAVHPSQSCAGRTHVQ--IVPTSGYEIAIVKWFNRMK 121
Query: 122 GFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINV 176
GFGF+TR + EDIF+H ++ + L G+ V G G K + A V
Sbjct: 122 GFGFLTRGEGTEDIFLHMETVRRYG----MTELKPGDSVLVRYGGGPKGLMAAEV 172
>gi|367477595|ref|ZP_09476942.1| putative Cold shock protein, DNA binding, CspA-like [Bradyrhizobium
sp. ORS 285]
gi|365270045|emb|CCD89410.1| putative Cold shock protein, DNA binding, CspA-like [Bradyrhizobium
sp. ORS 285]
Length = 217
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 78/178 (43%), Gaps = 17/178 (9%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDF-NIGVGK 67
+ G++K++D+ +G+GFI + D+ +H + + + + ++ L +V+ G
Sbjct: 51 ISGVIKWFDASKGYGFIVPDNGWPDVLLHVTVLRRDGYQTAYEGARL--VVECVQRAKGY 108
Query: 68 KDIEAINVTGPNGI-PVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFI 126
+ +++ I P Q P + TV+ P R VK+++ RGFGF+
Sbjct: 109 QAFRIVSMDESTAIHPAQMLPPRTHVTVT---------PTSGLERAQVKWFNRLRGFGFV 159
Query: 127 TRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPV 184
T + DIFVH ++ + L G+ V G G K + A + G P
Sbjct: 160 TCGEGSPDIFVHMETLRRFG----MTELRPGQWVLVRYGPGSKGMMAAEIHPEAGSPA 213
Score = 38.9 bits (89), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 9/83 (10%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 69
R VK+++ RGFGF+T + DIFVH ++ + L G+ V G G K
Sbjct: 144 RAQVKWFNRLRGFGFVTCGEGSPDIFVHMETLRRFG----MTELRPGQWVLVRYGPGSKG 199
Query: 70 IEAINVTGPNGIPVQGAPKSSSE 92
+ A + P G+P SS
Sbjct: 200 MMAAEIH-----PEAGSPALSSH 217
>gi|304321239|ref|YP_003854882.1| cold shock protein [Parvularcula bermudensis HTCC2503]
gi|303300141|gb|ADM09740.1| cold shock protein [Parvularcula bermudensis HTCC2503]
Length = 173
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 75/172 (43%), Gaps = 16/172 (9%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQ-SLGLGEIVDFNIGVGK 67
+RG VK++D +G+GFIT D+ +H S + + + ++ E ++ G+
Sbjct: 14 IRGFVKWFDQTKGYGFITDEAGGRDVLIHSSCLKQSGRATAPEGAIVTCEAIESEKGLQA 73
Query: 68 KDIEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFIT 127
I + ++ N I A + V+G + + + VK++ +G+GF+T
Sbjct: 74 TRIINLEISELNTITRPPATRMPLVEVAGDFEDVT-----------VKWFSRAKGYGFLT 122
Query: 128 RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGP 179
+ EDIFVH + L G+ + + G G K + A + P
Sbjct: 123 ATNANEDIFVHMEVVRAAG----LSELQPGQRLRASYGRGTKGLLAAAIEPP 170
>gi|82654186|ref|NP_001026944.2| protein lin-28 homolog A [Gallus gallus]
gi|116248185|sp|Q45KJ5.2|LN28A_CHICK RecName: Full=Protein lin-28 homolog A; Short=Lin-28A
gi|82622705|gb|AAZ38895.2| LIN28A [Gallus gallus]
Length = 202
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 11/87 (12%)
Query: 112 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 164
GI K+++ + GFGF++ LD+ D+FVH+S + F+SL GE V+F
Sbjct: 36 GICKWFNVRMGFGFLSMTAKGGAMLDSPVDVFVHQSKLHMEG----FRSLKEGEAVEFTF 91
Query: 165 GVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP G+ G+ + P
Sbjct: 92 KKSSKGLESIRVTGPGGVFCIGSERRP 118
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 50/91 (54%), Gaps = 14/91 (15%)
Query: 11 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
GI K+++ + GFGF++ LD+ D+FVH+S + F+SL GE V+F
Sbjct: 36 GICKWFNVRMGFGFLSMTAKGGAMLDSPVDVFVHQSKLHMEG----FRSLKEGEAVEFTF 91
Query: 64 GVGKKDIEAINVTGPNGIPVQGA---PKSSS 91
K +E+I VTGP G+ G+ PKS S
Sbjct: 92 KKSSKGLESIRVTGPGGVFCIGSERRPKSKS 122
>gi|410086796|ref|ZP_11283503.1| hypothetical protein C790_0897 [Morganella morganii SC01]
gi|455738904|ref|YP_007505170.1| hypothetical protein MU9_1751 [Morganella morganii subsp.
morganii KT]
gi|409766630|gb|EKN50720.1| hypothetical protein C790_0897 [Morganella morganii SC01]
gi|455420467|gb|AGG30797.1| hypothetical protein MU9_1751 [Morganella morganii subsp.
morganii KT]
Length = 70
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
++G VK+++ +GFGFIT D +D+FVH S+I F++LG G+ V+F I G K
Sbjct: 5 MKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGAG----FKTLGEGQQVEFTIENGAK 60
Query: 69 DIEAINVT 76
A NVT
Sbjct: 61 GPAAANVT 68
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
++G VK+++ +GFGFIT D +D+FVH S+I F++LG G+ V+F I G K
Sbjct: 5 MKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGAG----FKTLGEGQQVEFTIENGAK 60
Query: 170 DIEAINVT 177
A NVT
Sbjct: 61 GPAAANVT 68
>gi|374082030|gb|AEY81219.1| LIN28B variant [Ovis aries]
Length = 267
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 11/87 (12%)
Query: 112 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 164
G K+++ + GFGFI+ LD D+FVH+S + F+SL GE V+F
Sbjct: 38 GHCKWFNVRMGFGFISMISREGSPLDIPVDVFVHQSKLFMEG----FRSLKEGEPVEFTF 93
Query: 165 GVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP G P G+ + P
Sbjct: 94 KESSKGLESIRVTGPGGSPCLGSERRP 120
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 11/83 (13%)
Query: 11 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
G K+++ + GFGFI+ LD D+FVH+S + F+SL GE V+F
Sbjct: 38 GHCKWFNVRMGFGFISMISREGSPLDIPVDVFVHQSKLFMEG----FRSLKEGEPVEFTF 93
Query: 64 GVGKKDIEAINVTGPNGIPVQGA 86
K +E+I VTGP G P G+
Sbjct: 94 KESSKGLESIRVTGPGGSPCLGS 116
>gi|337286358|ref|YP_004625831.1| cold-shock DNA-binding domain-containing protein
[Thermodesulfatator indicus DSM 15286]
gi|335359186|gb|AEH44867.1| cold-shock DNA-binding domain protein [Thermodesulfatator indicus
DSM 15286]
Length = 68
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 47/68 (69%), Gaps = 5/68 (7%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V+G VK++D K+G+GFI+R D+ D+FVH S+I +MN F++L G+ V+F I G K
Sbjct: 2 VKGKVKWFDEKKGYGFISR-DDGGDVFVHFSAI-QMNG---FKTLQEGQTVEFEITQGPK 56
Query: 69 DIEAINVT 76
+A NVT
Sbjct: 57 GEQAANVT 64
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 47/68 (69%), Gaps = 5/68 (7%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V+G VK++D K+G+GFI+R D+ D+FVH S+I +MN F++L G+ V+F I G K
Sbjct: 2 VKGKVKWFDEKKGYGFISR-DDGGDVFVHFSAI-QMNG---FKTLQEGQTVEFEITQGPK 56
Query: 170 DIEAINVT 177
+A NVT
Sbjct: 57 GEQAANVT 64
>gi|227202808|dbj|BAH56877.1| AT4G38680 [Arabidopsis thaliana]
Length = 204
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 53/77 (68%), Gaps = 5/77 (6%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 69
+G VK++D+++GFGFIT D +D+FVH+SSI + F+SL E V+F + + +
Sbjct: 12 KGSVKWFDTQKGFGFITPDDGGDDLFVHQSSIR----SEGFRSLAAEEAVEFEVEIDNNN 67
Query: 70 I-EAINVTGPNGIPVQG 85
+AI+V+GP+G PVQG
Sbjct: 68 RPKAIDVSGPDGAPVQG 84
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 53/77 (68%), Gaps = 5/77 (6%)
Query: 111 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 170
+G VK++D+++GFGFIT D +D+FVH+SSI + F+SL E V+F + + +
Sbjct: 12 KGSVKWFDTQKGFGFITPDDGGDDLFVHQSSIR----SEGFRSLAAEEAVEFEVEIDNNN 67
Query: 171 I-EAINVTGPNGIPVQG 186
+AI+V+GP+G PVQG
Sbjct: 68 RPKAIDVSGPDGAPVQG 84
>gi|217076694|ref|YP_002334410.1| hypothetical protein THA_582 [Thermosipho africanus TCF52B]
gi|419759450|ref|ZP_14285749.1| hypothetical protein H17ap60334_00677 [Thermosipho africanus
H17ap60334]
gi|217036547|gb|ACJ75069.1| conserved domain protein [Thermosipho africanus TCF52B]
gi|407515460|gb|EKF50205.1| hypothetical protein H17ap60334_00677 [Thermosipho africanus
H17ap60334]
Length = 65
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 46/67 (68%), Gaps = 5/67 (7%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
++G VK++D+K+G+GFIT+ D EDIFVH S+I F++L G+ V+F++ G+K
Sbjct: 1 MKGTVKWFDAKKGYGFITKEDG-EDIFVHWSAIQTDG----FKTLKEGQEVEFDVQDGQK 55
Query: 69 DIEAINV 75
+A NV
Sbjct: 56 GPQAANV 62
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 46/67 (68%), Gaps = 5/67 (7%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
++G VK++D+K+G+GFIT+ D EDIFVH S+I F++L G+ V+F++ G+K
Sbjct: 1 MKGTVKWFDAKKGYGFITKEDG-EDIFVHWSAIQTDG----FKTLKEGQEVEFDVQDGQK 55
Query: 170 DIEAINV 176
+A NV
Sbjct: 56 GPQAANV 62
>gi|384219057|ref|YP_005610223.1| cold shock protein [Bradyrhizobium japonicum USDA 6]
gi|354957956|dbj|BAL10635.1| cold shock protein [Bradyrhizobium japonicum USDA 6]
Length = 218
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 76/179 (42%), Gaps = 21/179 (11%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G++K++D+ +G+GFI + D+ +H V + + FQ+ G + K
Sbjct: 52 VHGVIKWFDASKGYGFIVPDNGWPDVLLH----VTVLRRDGFQTAYEGARIVVECIQRAK 107
Query: 69 DIEAINVTGPNGI----PVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFG 124
+A V + P Q P + TV+ T + R VK+++ RGFG
Sbjct: 108 GYQAFRVVSMDESTAIHPAQMLPPRTHVTVTATSGLE---------RAQVKWFNRLRGFG 158
Query: 125 FITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIP 183
F+T + DIFVH ++ + L G+ V G G K + A + G P
Sbjct: 159 FLTCGEGTPDIFVHMETLRRFG----MTELRPGQYVLVRFGPGSKGMMAAEIHPETGSP 213
>gi|296448672|ref|ZP_06890536.1| cold-shock DNA-binding domain protein [Methylosinus trichosporium
OB3b]
gi|296253819|gb|EFH00982.1| cold-shock DNA-binding domain protein [Methylosinus trichosporium
OB3b]
Length = 195
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 77/176 (43%), Gaps = 15/176 (8%)
Query: 2 TKFEIHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDF 61
++ V G +K++D +G+GF+ D DI +H +++ + FQ+ G V
Sbjct: 23 AALDLIEVSGAIKWFDVSKGYGFVVPDDGGADILLHVTTLRRSG----FQTAYEGARVVC 78
Query: 62 NIGVGKKDIEAINVTG-PNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSK 120
K ++ V + A +S+ T S + + A IVK+++
Sbjct: 79 EAQKRPKGMQVFRVVAIDESTAIHPAQSASARTHSQVTPSSGYEIA------IVKWFNRV 132
Query: 121 RGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINV 176
+GFGF+TR D +DIF+H ++ + L G+ V G G K + A V
Sbjct: 133 KGFGFLTRGDGTDDIFLHMETVRRYG----LAELKPGDSVLVRYGDGPKGLMATEV 184
>gi|92117669|ref|YP_577398.1| cold-shock DNA-binding domain-containing protein [Nitrobacter
hamburgensis X14]
gi|91800563|gb|ABE62938.1| cold-shock DNA-binding protein family [Nitrobacter hamburgensis
X14]
Length = 217
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 78/177 (44%), Gaps = 17/177 (9%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGL-GEIVDFNIGVGK 67
+ G++K++D+ +G+GFI + D+ +H + + + + ++ L E V G
Sbjct: 51 ISGVIKWFDASKGYGFIIPDNGWSDVLLHVTVLRRDGYQTVYEGARLICECVQRAKGYQV 110
Query: 68 KDIEAINVTGPNGI-PVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFI 126
I +++ + I P Q P + +V+ P R VK+++ RGFGF+
Sbjct: 111 FRITSMDES--TAIHPAQMLPPRTHVSVT---------PTSGLERAQVKWFNRLRGFGFL 159
Query: 127 TRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIP 183
T + DIFVH ++ + L G+ V G G K + A + G P
Sbjct: 160 TCGEGTPDIFVHMETLRRFG----MTELRPGQFVLVRFGPGSKGMMAAEIQPETGAP 212
>gi|403253381|ref|ZP_10919682.1| cold-shock DNA-binding domain protein [Thermotoga sp. EMP]
gi|402810915|gb|EJX25403.1| cold-shock DNA-binding domain protein [Thermotoga sp. EMP]
Length = 66
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 46/67 (68%), Gaps = 5/67 (7%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+RG VK++DSK+G+GFIT+ D D+FVH S+I + F++L G++V+F I GKK
Sbjct: 1 MRGKVKWFDSKKGYGFITK-DEGGDVFVHWSAI----EMEGFKTLKEGQVVEFEIQEGKK 55
Query: 69 DIEAINV 75
+A +V
Sbjct: 56 GPQAAHV 62
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 46/67 (68%), Gaps = 5/67 (7%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+RG VK++DSK+G+GFIT+ D D+FVH S+I + F++L G++V+F I GKK
Sbjct: 1 MRGKVKWFDSKKGYGFITK-DEGGDVFVHWSAI----EMEGFKTLKEGQVVEFEIQEGKK 55
Query: 170 DIEAINV 176
+A +V
Sbjct: 56 GPQAAHV 62
>gi|167647685|ref|YP_001685348.1| cold-shock DNA-binding domain-containing protein [Caulobacter sp.
K31]
gi|167350115|gb|ABZ72850.1| cold-shock DNA-binding domain protein [Caulobacter sp. K31]
Length = 179
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 21/167 (12%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIG----VG 66
G+VK+++ +GFGFI D +D+FVH +++ + L G+ V + + G
Sbjct: 4 GVVKWFNPAKGFGFIQPEDGGQDVFVHIAAVERSG----LSGLNEGDQVTYEMEEDRRSG 59
Query: 67 KKDIEAINVTGPNGIPV---QGAPKSSSETVSGTY------RNDSFFPAVHTVRGIVKFY 117
K + VTG P + AP+ G Y A G+VK++
Sbjct: 60 KTSAGNLRVTGQGAAPSAPRRPAPRGFDAPRGGGYDAPRGGGYGGGGGAGEAGTGVVKWF 119
Query: 118 DSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 164
+S +GFGFI + DIFVH S++ + + L G+ V + +
Sbjct: 120 NSTKGFGFIQPDNGGGDIFVHISAVERAG----LRGLNEGQQVGYEL 162
>gi|15644431|ref|NP_229483.1| cold shock protein [Thermotoga maritima MSB8]
gi|418045741|ref|ZP_12683836.1| cold-shock DNA-binding domain protein [Thermotoga maritima MSB8]
gi|6225214|sp|O54310.1|CSP_THEMA RecName: Full=Cold shock-like protein
gi|16974798|pdb|1G6P|A Chain A, Solution Nmr Structure Of The Cold Shock Protein From
The Hyperthermophilic Bacterium Thermotoga Maritima
gi|4982259|gb|AAD36750.1|AE001809_2 cold shock protein [Thermotoga maritima MSB8]
gi|2894098|emb|CAA72105.1| cold shock protein [Thermotoga maritima MSB8]
gi|351676626|gb|EHA59779.1| cold-shock DNA-binding domain protein [Thermotoga maritima MSB8]
Length = 66
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 46/67 (68%), Gaps = 5/67 (7%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+RG VK++DSK+G+GFIT+ D D+FVH S+I + F++L G++V+F I GKK
Sbjct: 1 MRGKVKWFDSKKGYGFITK-DEGGDVFVHWSAI----EMEGFKTLKEGQVVEFEIQEGKK 55
Query: 69 DIEAINV 75
+A +V
Sbjct: 56 GPQAAHV 62
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 46/67 (68%), Gaps = 5/67 (7%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+RG VK++DSK+G+GFIT+ D D+FVH S+I + F++L G++V+F I GKK
Sbjct: 1 MRGKVKWFDSKKGYGFITK-DEGGDVFVHWSAI----EMEGFKTLKEGQVVEFEIQEGKK 55
Query: 170 DIEAINV 176
+A +V
Sbjct: 56 GPQAAHV 62
>gi|377520163|ref|NP_001243697.1| protein lin-28 homolog B [Ovis aries]
gi|374082032|gb|AEY81220.1| LIN28B [Ovis aries]
Length = 253
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 11/87 (12%)
Query: 112 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 164
G K+++ + GFGFI+ LD D+FVH+S + F+SL GE V+F
Sbjct: 38 GHCKWFNVRMGFGFISMISREGSPLDIPVDVFVHQSKLFMEG----FRSLKEGEPVEFTF 93
Query: 165 GVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP G P G+ + P
Sbjct: 94 KESSKGLESIRVTGPGGSPCLGSERRP 120
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 11/83 (13%)
Query: 11 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
G K+++ + GFGFI+ LD D+FVH+S + F+SL GE V+F
Sbjct: 38 GHCKWFNVRMGFGFISMISREGSPLDIPVDVFVHQSKLFMEG----FRSLKEGEPVEFTF 93
Query: 64 GVGKKDIEAINVTGPNGIPVQGA 86
K +E+I VTGP G P G+
Sbjct: 94 KESSKGLESIRVTGPGGSPCLGS 116
>gi|348550115|ref|XP_003460878.1| PREDICTED: protein lin-28 homolog A-like [Cavia porcellus]
Length = 209
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 11/87 (12%)
Query: 112 GIVKFYDSKRGFGFIT-------RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 164
GI K+++ + GFGF++ LD D+FVH+S + + F+SL GE V+F
Sbjct: 42 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHM----EVFRSLKEGEAVEFTF 97
Query: 165 GVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP G+ G+ + P
Sbjct: 98 KKSAKGLESIRVTGPGGVFCIGSERRP 124
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 11/78 (14%)
Query: 11 GIVKFYDSKRGFGFIT-------RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
GI K+++ + GFGF++ LD D+FVH+S + + F+SL GE V+F
Sbjct: 42 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHM----EVFRSLKEGEAVEFTF 97
Query: 64 GVGKKDIEAINVTGPNGI 81
K +E+I VTGP G+
Sbjct: 98 KKSAKGLESIRVTGPGGV 115
>gi|326936337|ref|XP_003214212.1| PREDICTED: protein lin-28 homolog A-like, partial [Meleagris
gallopavo]
Length = 191
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 11/87 (12%)
Query: 112 GIVKFYDSKRGFGFIT-------RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 164
GI K+++ + GFGF++ LD+ D+FVH+S + F+SL GE V+F
Sbjct: 25 GICKWFNVRMGFGFLSMTAKGGATLDSPVDVFVHQSKLHMEG----FRSLKEGEAVEFTF 80
Query: 165 GVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP G+ G+ + P
Sbjct: 81 KKSSKGLESIRVTGPGGVFCIGSERRP 107
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 11/78 (14%)
Query: 11 GIVKFYDSKRGFGFIT-------RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
GI K+++ + GFGF++ LD+ D+FVH+S + F+SL GE V+F
Sbjct: 25 GICKWFNVRMGFGFLSMTAKGGATLDSPVDVFVHQSKLHMEG----FRSLKEGEAVEFTF 80
Query: 64 GVGKKDIEAINVTGPNGI 81
K +E+I VTGP G+
Sbjct: 81 KKSSKGLESIRVTGPGGV 98
>gi|158423560|ref|YP_001524852.1| DNA-binding cold-shock protein [Azorhizobium caulinodans ORS 571]
gi|158330449|dbj|BAF87934.1| DNA-binding cold-shock protein [Azorhizobium caulinodans ORS 571]
Length = 192
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 77/173 (44%), Gaps = 16/173 (9%)
Query: 5 EIHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIG 64
++ V G VK++D+ +G+GFI D D+ VH + + + F ++ IV +
Sbjct: 25 DLLEVSGAVKWFDAAKGYGFIVPDDGGPDVLVHVTCLRR---DGFTTAMEGARIVCEAVR 81
Query: 65 VGKKDIEAINVTGPN-GIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGF 123
K ++A V + VQ P+ + V P+ R VK+++ RGF
Sbjct: 82 R-SKGLQAFRVLSLDLSTAVQPVPQPTRSRVH-------VAPSGGFERATVKWFNRMRGF 133
Query: 124 GFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINV 176
GF+++ + DIFVH ++ + L G+ V G G K + A V
Sbjct: 134 GFLSKGEGTPDIFVHMETLRQQG----LTELRPGQSVLVRYGDGPKGLMATEV 182
>gi|304395415|ref|ZP_07377298.1| cold-shock DNA-binding domain protein [Pantoea sp. aB]
gi|308185821|ref|YP_003929952.1| cold shock-like protein cspG (CPS-G) [Pantoea vagans C9-1]
gi|372276340|ref|ZP_09512376.1| cold shock-like protein cspG (CPS-G) [Pantoea sp. SL1_M5]
gi|390435623|ref|ZP_10224161.1| cold shock-like protein cspG (CPS-G) [Pantoea agglomerans IG1]
gi|440760566|ref|ZP_20939674.1| Cold shock protein CspG [Pantoea agglomerans 299R]
gi|304356709|gb|EFM21073.1| cold-shock DNA-binding domain protein [Pantoea sp. aB]
gi|308056331|gb|ADO08503.1| Cold shock-like protein cspG (CPS-G) [Pantoea vagans C9-1]
gi|436425692|gb|ELP23421.1| Cold shock protein CspG [Pantoea agglomerans 299R]
Length = 70
Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 44/69 (63%), Gaps = 4/69 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+RG VK++++++GFGFI+ D +D+FVH S+I + F+SL G+ V+F + G K
Sbjct: 5 IRGTVKWFNAEKGFGFISPADGSKDVFVHFSAIQGTD----FRSLDEGQQVEFTVENGAK 60
Query: 69 DIEAINVTG 77
A NV G
Sbjct: 61 GPAAANVVG 69
Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 44/69 (63%), Gaps = 4/69 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+RG VK++++++GFGFI+ D +D+FVH S+I + F+SL G+ V+F + G K
Sbjct: 5 IRGTVKWFNAEKGFGFISPADGSKDVFVHFSAIQGTD----FRSLDEGQQVEFTVENGAK 60
Query: 170 DIEAINVTG 178
A NV G
Sbjct: 61 GPAAANVVG 69
>gi|238898407|ref|YP_002924088.1| RNA chaperone, transcription antiterminator, affects expression
of rpoS and uspA [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
gi|229466166|gb|ACQ67940.1| RNA chaperone, transcription antiterminator, affects expression
of rpoS and uspA [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
Length = 72
Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 43/67 (64%), Gaps = 4/67 (5%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 69
+G VK+++ +GFGFIT D +D+FVH S+I F++LG G++V+F+I G K
Sbjct: 7 KGSVKWFNESKGFGFITPADGSKDVFVHFSAIDSSG----FKTLGEGQMVEFSIENGAKG 62
Query: 70 IEAINVT 76
A NV+
Sbjct: 63 PSAANVS 69
Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 43/67 (64%), Gaps = 4/67 (5%)
Query: 111 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 170
+G VK+++ +GFGFIT D +D+FVH S+I F++LG G++V+F+I G K
Sbjct: 7 KGSVKWFNESKGFGFITPADGSKDVFVHFSAIDSSG----FKTLGEGQMVEFSIENGAKG 62
Query: 171 IEAINVT 177
A NV+
Sbjct: 63 PSAANVS 69
>gi|441617364|ref|XP_003268610.2| PREDICTED: uncharacterized protein LOC100595411 [Nomascus
leucogenys]
Length = 1232
Score = 52.8 bits (125), Expect = 8e-05, Method: Composition-based stats.
Identities = 25/58 (43%), Positives = 40/58 (68%), Gaps = 2/58 (3%)
Query: 29 DNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGA 86
D KED+FVH+++I K+ P F +L +G + +F++ G+K EA NVT P +PV+G+
Sbjct: 547 DTKEDVFVHQTTI-KITPASFCAALEMGRL-EFDVVEGEKGAEATNVTQPGEVPVKGS 602
Score = 52.8 bits (125), Expect = 8e-05, Method: Composition-based stats.
Identities = 25/58 (43%), Positives = 40/58 (68%), Gaps = 2/58 (3%)
Query: 130 DNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGA 187
D KED+FVH+++I K+ P F +L +G + +F++ G+K EA NVT P +PV+G+
Sbjct: 547 DTKEDVFVHQTTI-KITPASFCAALEMGRL-EFDVVEGEKGAEATNVTQPGEVPVKGS 602
>gi|144900094|emb|CAM76958.1| cold shock DNA-binding domain protein [Magnetospirillum
gryphiswaldense MSR-1]
Length = 209
Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 13/168 (7%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V VK++++ +GFGF+ D D F+H S++ + + G + ++G G +
Sbjct: 52 VTATVKWFNASKGFGFVAPSDGTPDAFLHISALERAG----LTQVAEGTTLVVDLGQGNR 107
Query: 69 DIEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFITR 128
+ + V + AP++S+ + R S TV G+VKF+ +++GFGF+
Sbjct: 108 GPQVVIVHEVDASTATAAPRASASSAPRMDRGPS-----ETVEGVVKFFSAEKGFGFVQT 162
Query: 129 LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINV 176
+D+FVH +K + ++L G+ V G+K +A V
Sbjct: 163 DQGGKDVFVH----IKALERSGIKALETGQRVRCTTTQGQKGPQADTV 206
Score = 39.7 bits (91), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 1 MTKFEIHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVD 60
M + TV G+VKF+ +++GFGF+ +D+FVH +K + ++L G+ V
Sbjct: 136 MDRGPSETVEGVVKFFSAEKGFGFVQTDQGGKDVFVH----IKALERSGIKALETGQRVR 191
Query: 61 FNIGVGKKDIEAINV 75
G+K +A V
Sbjct: 192 CTTTQGQKGPQADTV 206
>gi|440901177|gb|ELR52165.1| Protein lin-28-like protein B, partial [Bos grunniens mutus]
Length = 245
Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 11/87 (12%)
Query: 112 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 164
G K+++ + GFGFI+ LD D+FVH+S + F+SL GE V+F
Sbjct: 30 GHCKWFNVRMGFGFISMISREGSPLDIPVDVFVHQSKLFMEG----FRSLKEGEPVEFTF 85
Query: 165 GVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP G P G+ + P
Sbjct: 86 KKSSKGLESIRVTGPGGSPCLGSERRP 112
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 11/83 (13%)
Query: 11 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
G K+++ + GFGFI+ LD D+FVH+S + F+SL GE V+F
Sbjct: 30 GHCKWFNVRMGFGFISMISREGSPLDIPVDVFVHQSKLFMEG----FRSLKEGEPVEFTF 85
Query: 64 GVGKKDIEAINVTGPNGIPVQGA 86
K +E+I VTGP G P G+
Sbjct: 86 KKSSKGLESIRVTGPGGSPCLGS 108
>gi|422008238|ref|ZP_16355223.1| cold shock protein [Providencia rettgeri Dmel1]
gi|414096373|gb|EKT58032.1| cold shock protein [Providencia rettgeri Dmel1]
Length = 70
Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 7 HTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVG 66
+T+ G VK+++ +GFGFIT D +D+FVH S+I N F+SL G+ V F+I G
Sbjct: 3 NTMTGTVKWFNDDKGFGFITPADGSKDVFVHFSAIQSDN----FKSLAEGQQVSFSIENG 58
Query: 67 KKDIEAINV 75
K A NV
Sbjct: 59 AKGPAAANV 67
Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 108 HTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVG 167
+T+ G VK+++ +GFGFIT D +D+FVH S+I N F+SL G+ V F+I G
Sbjct: 3 NTMTGTVKWFNDDKGFGFITPADGSKDVFVHFSAIQSDN----FKSLAEGQQVSFSIENG 58
Query: 168 KKDIEAINV 176
K A NV
Sbjct: 59 AKGPAAANV 67
>gi|410959747|ref|XP_003986461.1| PREDICTED: protein lin-28 homolog B [Felis catus]
Length = 250
Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 11/87 (12%)
Query: 112 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 164
G K+++ + GFGFI+ LD D+FVH+S + F+SL GE V+F
Sbjct: 32 GHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEG----FRSLKEGEPVEFTF 87
Query: 165 GVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP G P G+ + P
Sbjct: 88 KKSSKGLESIRVTGPGGSPCLGSERRP 114
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 11/83 (13%)
Query: 11 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
G K+++ + GFGFI+ LD D+FVH+S + F+SL GE V+F
Sbjct: 32 GHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEG----FRSLKEGEPVEFTF 87
Query: 64 GVGKKDIEAINVTGPNGIPVQGA 86
K +E+I VTGP G P G+
Sbjct: 88 KKSSKGLESIRVTGPGGSPCLGS 110
>gi|410927446|ref|XP_003977157.1| PREDICTED: protein lin-28 homolog A-like [Takifugu rubripes]
Length = 340
Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 11/87 (12%)
Query: 112 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 164
G+ K+++ + GFGF++ LD D+FVH+S + + F+SL GE V+F
Sbjct: 172 GVCKWFNVRMGFGFLSMTNREGLPLDEPVDVFVHQSKLHM----EGFRSLKEGEAVEFTF 227
Query: 165 GVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+ VTGP GI G+ + P
Sbjct: 228 KKSSKGLESQRVTGPGGIHCMGSERRP 254
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 11/83 (13%)
Query: 11 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
G+ K+++ + GFGF++ LD D+FVH+S + + F+SL GE V+F
Sbjct: 172 GVCKWFNVRMGFGFLSMTNREGLPLDEPVDVFVHQSKLHM----EGFRSLKEGEAVEFTF 227
Query: 64 GVGKKDIEAINVTGPNGIPVQGA 86
K +E+ VTGP GI G+
Sbjct: 228 KKSSKGLESQRVTGPGGIHCMGS 250
>gi|359068767|ref|XP_002707884.2| PREDICTED: LOW QUALITY PROTEIN: protein lin-28 homolog B [Bos
taurus]
Length = 264
Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 11/87 (12%)
Query: 112 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 164
G K+++ + GFGFI+ LD D+FVH+S + F+SL GE V+F
Sbjct: 49 GHCKWFNVRMGFGFISMISREGSPLDIPVDVFVHQSKLFMEG----FRSLKEGEPVEFTF 104
Query: 165 GVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP G P G+ + P
Sbjct: 105 KKSSKGLESIRVTGPGGSPCLGSERRP 131
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 11/83 (13%)
Query: 11 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
G K+++ + GFGFI+ LD D+FVH+S + F+SL GE V+F
Sbjct: 49 GHCKWFNVRMGFGFISMISREGSPLDIPVDVFVHQSKLFMEG----FRSLKEGEPVEFTF 104
Query: 64 GVGKKDIEAINVTGPNGIPVQGA 86
K +E+I VTGP G P G+
Sbjct: 105 KKSSKGLESIRVTGPGGSPCLGS 127
>gi|440229823|ref|YP_007343616.1| cold shock protein [Serratia marcescens FGI94]
gi|440051528|gb|AGB81431.1| cold shock protein [Serratia marcescens FGI94]
Length = 69
Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
++G VK+++ +GFGFIT D +D+FVH S+IV F++L G+ V+F I G K
Sbjct: 4 IKGSVKWFNESKGFGFITPEDGSKDVFVHFSAIVSNG----FKTLAEGQQVEFEITNGAK 59
Query: 69 DIEAINVTG 77
A NVT
Sbjct: 60 GPSAANVTA 68
Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
++G VK+++ +GFGFIT D +D+FVH S+IV F++L G+ V+F I G K
Sbjct: 4 IKGSVKWFNESKGFGFITPEDGSKDVFVHFSAIVSNG----FKTLAEGQQVEFEITNGAK 59
Query: 170 DIEAINVTG 178
A NVT
Sbjct: 60 GPSAANVTA 68
>gi|82242626|sp|Q8AVK2.1|LN28B_XENLA RecName: Full=Protein lin-28 homolog B; Short=Lin-28B
gi|27503403|gb|AAH42225.1| LOC373796 protein, partial [Xenopus laevis]
Length = 252
Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 11/94 (11%)
Query: 105 PAVHTVRGIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLG 157
P V G K+++ + GFGFI+ L+N D+FVH+S + F+SL G
Sbjct: 28 PQVLLGSGHCKWFNVRMGFGFISMTSREGSPLENPVDVFVHQSKLYMDG----FRSLKEG 83
Query: 158 EIVDFNIGVGKKDIEAINVTGPNGIPVQGAPKVP 191
E V+F K E++ VTGP G P G+ + P
Sbjct: 84 EPVEFTFKKSSKGFESLRVTGPGGNPCLGSERRP 117
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 11/83 (13%)
Query: 11 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
G K+++ + GFGFI+ L+N D+FVH+S + F+SL GE V+F
Sbjct: 35 GHCKWFNVRMGFGFISMTSREGSPLENPVDVFVHQSKLYMDG----FRSLKEGEPVEFTF 90
Query: 64 GVGKKDIEAINVTGPNGIPVQGA 86
K E++ VTGP G P G+
Sbjct: 91 KKSSKGFESLRVTGPGGNPCLGS 113
>gi|444706313|gb|ELW47656.1| Protein lin-28 like protein A [Tupaia chinensis]
Length = 247
Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 11/87 (12%)
Query: 112 GIVKFYDSKRGFGFIT-------RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 164
GI K+++ + GFGF++ LD D+FVH+S + F+SL GE V+F
Sbjct: 80 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEG----FRSLKEGEAVEFTF 135
Query: 165 GVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP G+ G+ + P
Sbjct: 136 KKSAKGLESIRVTGPGGVFCIGSERRP 162
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 11/78 (14%)
Query: 11 GIVKFYDSKRGFGFIT-------RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
GI K+++ + GFGF++ LD D+FVH+S + F+SL GE V+F
Sbjct: 80 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEG----FRSLKEGEAVEFTF 135
Query: 64 GVGKKDIEAINVTGPNGI 81
K +E+I VTGP G+
Sbjct: 136 KKSAKGLESIRVTGPGGV 153
>gi|431838666|gb|ELK00596.1| Lin-28 like protein B [Pteropus alecto]
Length = 283
Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 13/88 (14%)
Query: 112 GIVKFYDSKRGFGFITRLDNKE--------DIFVHKSSIVKMNPKKFFQSLGLGEIVDFN 163
G K+++ + GFGFI+ + N+E D+FVH+S + F+SL GE V+F
Sbjct: 65 GHCKWFNVRMGFGFISMI-NREGSPLDIPVDVFVHQSKLFMEG----FRSLKEGEPVEFT 119
Query: 164 IGVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP G P G+ + P
Sbjct: 120 FKKSSKGLESIRVTGPGGSPCLGSERRP 147
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 13/84 (15%)
Query: 11 GIVKFYDSKRGFGFITRLDNKE--------DIFVHKSSIVKMNPKKFFQSLGLGEIVDFN 62
G K+++ + GFGFI+ + N+E D+FVH+S + F+SL GE V+F
Sbjct: 65 GHCKWFNVRMGFGFISMI-NREGSPLDIPVDVFVHQSKLFMEG----FRSLKEGEPVEFT 119
Query: 63 IGVGKKDIEAINVTGPNGIPVQGA 86
K +E+I VTGP G P G+
Sbjct: 120 FKKSSKGLESIRVTGPGGSPCLGS 143
>gi|290475740|ref|YP_003468629.1| cold shock protein, transcription antiterminator, affects
expression of rpoS and uspA [Xenorhabdus bovienii
SS-2004]
gi|289175062|emb|CBJ81865.1| cold shock protein, transcription antiterminator, affects
expression of rpoS and uspA [Xenorhabdus bovienii
SS-2004]
Length = 69
Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 4/69 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+ GIVK+++ +GFGFIT D +D+FVH S+I MN F++L G+ V+F I G K
Sbjct: 4 ITGIVKWFNESKGFGFITPADGSKDVFVHFSAI--MNDG--FKTLSEGQQVEFEIQNGPK 59
Query: 69 DIEAINVTG 77
A NVT
Sbjct: 60 GPAAANVTA 68
Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 4/69 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+ GIVK+++ +GFGFIT D +D+FVH S+I MN F++L G+ V+F I G K
Sbjct: 4 ITGIVKWFNESKGFGFITPADGSKDVFVHFSAI--MNDG--FKTLSEGQQVEFEIQNGPK 59
Query: 170 DIEAINVTG 178
A NVT
Sbjct: 60 GPAAANVTA 68
>gi|402770758|ref|YP_006590295.1| cold-shock DNA-binding domain-containing protein [Methylocystis sp.
SC2]
gi|401772778|emb|CCJ05644.1| Cold-shock DNA-binding domain protein [Methylocystis sp. SC2]
Length = 203
Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 76/175 (43%), Gaps = 13/175 (7%)
Query: 2 TKFEIHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDF 61
T E+ V G +K++D +G+GF+ D +DI +H + + + + F+ +
Sbjct: 31 TGLELVEVAGRIKWFDVAKGYGFVVPDDGSDDILLHVTILRRSGMQTAFEGARV------ 84
Query: 62 NIGVGKKDIEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKR 121
+ +K ++ + V + A S T+ P IVK+++ +
Sbjct: 85 -VCEAQKRVKGMQVFRVIAMDESTAVHPSQSCAGRTHVQ--IVPTSGYEIAIVKWFNRMK 141
Query: 122 GFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINV 176
GFGF+TR + EDIF+H ++ + L G+ V G G K + A V
Sbjct: 142 GFGFLTRGEGTEDIFLHMETVRRYG----MTELKPGDSVLVRYGGGPKGLMAAEV 192
>gi|329890044|ref|ZP_08268387.1| Cold-shock DNA-binding domain protein [Brevundimonas diminuta ATCC
11568]
gi|328845345|gb|EGF94909.1| Cold-shock DNA-binding domain protein [Brevundimonas diminuta ATCC
11568]
Length = 173
Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 11/149 (7%)
Query: 1 MTKFEIHTVRGIVKFYDSKRGFGFIT----RLDNKEDIFVHKSSIVKMNPKKFFQSLGLG 56
M E V G VK++D+ +G+GFI L + D+ +H +S+ + G G
Sbjct: 1 MEPIETVKVVGRVKWFDAGKGYGFIVPDQPDLTEERDVLLHVTSLRDAG----HEMAGEG 56
Query: 57 EIVDFNIGVGKKDIEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKF 116
+ K + IN+ + AP T S + P +VK+
Sbjct: 57 AAIVCECAKRAKGWQVINIVE---LEASAAPARRELTRSSAHARPEGLPDGPLEAAVVKW 113
Query: 117 YDSKRGFGFITRLDNKEDIFVHKSSIVKM 145
++ +G+GF+ R DIFVH ++ +
Sbjct: 114 FNRTKGYGFVVRDGQAGDIFVHVETLRRC 142
>gi|336390567|gb|AEI54343.1| lin-28-like protein [Sus scrofa]
Length = 263
Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 11/87 (12%)
Query: 112 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 164
G K+++ + GFGFI+ LD D+FVH+S + F+SL GE V+F
Sbjct: 45 GHCKWFNVRMGFGFISMISREGSPLDIPVDVFVHQSKLFMEG----FRSLKEGEPVEFTF 100
Query: 165 GVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP G P G+ + P
Sbjct: 101 KKSSKGLESIRVTGPGGSPCLGSERRP 127
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 11/83 (13%)
Query: 11 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
G K+++ + GFGFI+ LD D+FVH+S + F+SL GE V+F
Sbjct: 45 GHCKWFNVRMGFGFISMISREGSPLDIPVDVFVHQSKLFMEG----FRSLKEGEPVEFTF 100
Query: 64 GVGKKDIEAINVTGPNGIPVQGA 86
K +E+I VTGP G P G+
Sbjct: 101 KKSSKGLESIRVTGPGGSPCLGS 123
>gi|297824943|ref|XP_002880354.1| hypothetical protein ARALYDRAFT_480954 [Arabidopsis lyrata subsp.
lyrata]
gi|297326193|gb|EFH56613.1| hypothetical protein ARALYDRAFT_480954 [Arabidopsis lyrata subsp.
lyrata]
Length = 198
Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 51/81 (62%), Gaps = 13/81 (16%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDF-----NIG 64
+G VK++D+++GFGFIT D +D+FVH+SSI + F+SL E V+F N G
Sbjct: 15 KGSVKWFDTQKGFGFITPNDGGDDLFVHQSSIR----SEGFRSLAAEESVEFEVEVDNTG 70
Query: 65 VGKKDIEAINVTGPNGIPVQG 85
K A+ V+GP+G PVQG
Sbjct: 71 RPK----AVEVSGPDGAPVQG 87
Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 51/81 (62%), Gaps = 13/81 (16%)
Query: 111 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDF-----NIG 165
+G VK++D+++GFGFIT D +D+FVH+SSI + F+SL E V+F N G
Sbjct: 15 KGSVKWFDTQKGFGFITPNDGGDDLFVHQSSIR----SEGFRSLAAEESVEFEVEVDNTG 70
Query: 166 VGKKDIEAINVTGPNGIPVQG 186
K A+ V+GP+G PVQG
Sbjct: 71 RPK----AVEVSGPDGAPVQG 87
>gi|242239458|ref|YP_002987639.1| cold shock-like protein CspC [Dickeya dadantii Ech703]
gi|242131515|gb|ACS85817.1| cold-shock DNA-binding domain protein [Dickeya dadantii Ech703]
Length = 69
Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 4/68 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
++G VK+++ +GFGFIT D +D+FVH S+I F++L G+ V+F I G+K
Sbjct: 4 IKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGTG----FKTLAEGQNVEFEIQDGQK 59
Query: 69 DIEAINVT 76
A+NVT
Sbjct: 60 GPSAVNVT 67
Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 4/68 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
++G VK+++ +GFGFIT D +D+FVH S+I F++L G+ V+F I G+K
Sbjct: 4 IKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGTG----FKTLAEGQNVEFEIQDGQK 59
Query: 170 DIEAINVT 177
A+NVT
Sbjct: 60 GPSAVNVT 67
>gi|224033259|gb|ACN35705.1| unknown [Zea mays]
Length = 110
Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 38/62 (61%), Gaps = 4/62 (6%)
Query: 106 AVHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIG 165
A RG VK+++ +GFGFI+ D ED+FVH+SSI F+SL GE V+F++
Sbjct: 3 AAARQRGTVKWFNDTKGFGFISPEDGSEDLFVHQSSIKSEG----FRSLAEGEEVEFSVS 58
Query: 166 VG 167
G
Sbjct: 59 EG 60
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 4/57 (7%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVG 66
RG VK+++ +GFGFI+ D ED+FVH+SSI F+SL GE V+F++ G
Sbjct: 8 RGTVKWFNDTKGFGFISPEDGSEDLFVHQSSIKSEG----FRSLAEGEEVEFSVSEG 60
>gi|239616519|ref|YP_002939841.1| cold-shock DNA-binding domain protein [Kosmotoga olearia TBF
19.5.1]
gi|239505350|gb|ACR78837.1| cold-shock DNA-binding domain protein [Kosmotoga olearia TBF
19.5.1]
Length = 66
Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 47/67 (70%), Gaps = 5/67 (7%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
++G VK++++++G+GFITR D ED+F+H S IV F++L G+ V+F+I G+K
Sbjct: 1 MKGTVKWFNAQKGYGFITR-DEGEDVFIHFSGIVSDG----FKTLEEGQRVEFDIENGQK 55
Query: 69 DIEAINV 75
+A+NV
Sbjct: 56 GAQAVNV 62
Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 47/67 (70%), Gaps = 5/67 (7%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
++G VK++++++G+GFITR D ED+F+H S IV F++L G+ V+F+I G+K
Sbjct: 1 MKGTVKWFNAQKGYGFITR-DEGEDVFIHFSGIVSDG----FKTLEEGQRVEFDIENGQK 55
Query: 170 DIEAINV 176
+A+NV
Sbjct: 56 GAQAVNV 62
>gi|158296117|ref|XP_316618.3| AGAP006591-PA [Anopheles gambiae str. PEST]
gi|157016359|gb|EAA11383.3| AGAP006591-PA [Anopheles gambiae str. PEST]
Length = 182
Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 53/101 (52%), Gaps = 4/101 (3%)
Query: 87 PKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMN 146
P S S T N V RG K+++ +G+GFIT D +++FVH+ S+++M
Sbjct: 19 PGSEQHAASQTSPNPDQEVLVGPRRGRCKWFNVVKGWGFITPDDGGQEVFVHQ-SVIQMG 77
Query: 147 PKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGA 187
F+SLG E V+F + K EA +V GP+ +G+
Sbjct: 78 ---GFRSLGENEEVEFESKLSAKGYEATSVYGPSHAECKGS 115
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 47/77 (61%), Gaps = 4/77 (5%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 69
RG K+++ +G+GFIT D +++FVH+ S+++M F+SLG E V+F + K
Sbjct: 43 RGRCKWFNVVKGWGFITPDDGGQEVFVHQ-SVIQMG---GFRSLGENEEVEFESKLSAKG 98
Query: 70 IEAINVTGPNGIPVQGA 86
EA +V GP+ +G+
Sbjct: 99 YEATSVYGPSHAECKGS 115
>gi|121934029|gb|AAI27713.1| LIN28B protein [Homo sapiens]
gi|121934102|gb|AAI27714.1| LIN28B protein [Homo sapiens]
gi|146424334|gb|AAI41961.1| LIN28B protein [Homo sapiens]
gi|152061020|gb|AAI50539.1| LIN28B protein [Homo sapiens]
gi|152061071|gb|AAI50538.1| LIN28B protein [Homo sapiens]
Length = 227
Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 13/88 (14%)
Query: 112 GIVKFYDSKRGFGFITRLDNKE--------DIFVHKSSIVKMNPKKFFQSLGLGEIVDFN 163
G K+++ + GFGFI+ + N+E D+FVH+S + F+SL GE V+F
Sbjct: 9 GHCKWFNVRMGFGFISMI-NREGSPLDIPVDVFVHQSKLFMEG----FRSLKEGEPVEFT 63
Query: 164 IGVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP G P G+ + P
Sbjct: 64 FKKSSKGLESIRVTGPGGSPCLGSERRP 91
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 13/84 (15%)
Query: 11 GIVKFYDSKRGFGFITRLDNKE--------DIFVHKSSIVKMNPKKFFQSLGLGEIVDFN 62
G K+++ + GFGFI+ + N+E D+FVH+S + F+SL GE V+F
Sbjct: 9 GHCKWFNVRMGFGFISMI-NREGSPLDIPVDVFVHQSKLFMEG----FRSLKEGEPVEFT 63
Query: 63 IGVGKKDIEAINVTGPNGIPVQGA 86
K +E+I VTGP G P G+
Sbjct: 64 FKKSSKGLESIRVTGPGGSPCLGS 87
>gi|85058123|ref|YP_453825.1| major cold shock protein [Sodalis glossinidius str. 'morsitans']
gi|400405035|ref|YP_006587894.1| cold shock protein [secondary endosymbiont of Ctenarytaina
eucalypti]
gi|84778643|dbj|BAE73420.1| major cold shock protein [Sodalis glossinidius str. 'morsitans']
gi|400363398|gb|AFP84466.1| cold shock protein [secondary endosymbiont of Ctenarytaina
eucalypti]
Length = 70
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 43/67 (64%), Gaps = 4/67 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G+VK++D+ +GFGFIT D +D+FVH S+I + F++L G+ V+F I G+K
Sbjct: 5 VTGLVKWFDAGKGFGFITPADGSKDVFVHFSAIQSND----FKTLDEGQRVEFTIEQGQK 60
Query: 69 DIEAINV 75
A NV
Sbjct: 61 GPSAANV 67
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 43/67 (64%), Gaps = 4/67 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G+VK++D+ +GFGFIT D +D+FVH S+I + F++L G+ V+F I G+K
Sbjct: 5 VTGLVKWFDAGKGFGFITPADGSKDVFVHFSAIQSND----FKTLDEGQRVEFTIEQGQK 60
Query: 170 DIEAINV 176
A NV
Sbjct: 61 GPSAANV 67
>gi|91977002|ref|YP_569661.1| cold-shock DNA-binding domain-containing protein [Rhodopseudomonas
palustris BisB5]
gi|91683458|gb|ABE39760.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris
BisB5]
Length = 219
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 78/175 (44%), Gaps = 17/175 (9%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDF-NIGVGKKD 69
G++K++D+ +G+GFI + D+ +H + + + + ++ G +V+ G +
Sbjct: 55 GVIKWFDASKGYGFIVPDNGAADVLLHVTVLRRDGYQTAYE--GARIVVECVQRAKGYQA 112
Query: 70 IEAINVTGPNGI-PVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFITR 128
+++ I P Q P + +V+ P R VK+++ RGFGF+T
Sbjct: 113 FRVVSMDESTAIHPAQMLPPRTHVSVT---------PTSGLERAQVKWFNRLRGFGFLTC 163
Query: 129 LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIP 183
+ DIFVH ++ + L G+ V G G K + A + +G P
Sbjct: 164 GEGTPDIFVHMETLRRYG----MTELRPGQYVLVRFGPGSKGMMAAEIQPESGAP 214
>gi|78042603|ref|NP_001026942.1| protein lin-28 homolog B [Mus musculus]
gi|71724928|gb|AAZ38894.1| LIN28B [Mus musculus]
gi|111598825|gb|AAH89037.1| Lin-28 homolog B (C. elegans) [Mus musculus]
Length = 271
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 11/94 (11%)
Query: 105 PAVHTVRGIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLG 157
P V G K+++ + GFGFI+ LD D+FVH+S + + F+SL G
Sbjct: 23 PQVLHGTGHCKWFNVRMGFGFISMISREGNPLDIPVDVFVHQSKLFM----EGFRSLKEG 78
Query: 158 EIVDFNIGVGKKDIEAINVTGPNGIPVQGAPKVP 191
E V+F K +E+I VTGP G P G+ + P
Sbjct: 79 EPVEFTFKKSPKGLESIRVTGPGGSPCLGSERRP 112
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 11/83 (13%)
Query: 11 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
G K+++ + GFGFI+ LD D+FVH+S + + F+SL GE V+F
Sbjct: 30 GHCKWFNVRMGFGFISMISREGNPLDIPVDVFVHQSKLFM----EGFRSLKEGEPVEFTF 85
Query: 64 GVGKKDIEAINVTGPNGIPVQGA 86
K +E+I VTGP G P G+
Sbjct: 86 KKSPKGLESIRVTGPGGSPCLGS 108
>gi|354599114|ref|ZP_09017131.1| cold-shock DNA-binding domain protein [Brenneria sp. EniD312]
gi|353677049|gb|EHD23082.1| cold-shock DNA-binding domain protein [Brenneria sp. EniD312]
Length = 72
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 45/68 (66%), Gaps = 2/68 (2%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+ G+VK++D+ +GFGFIT D +D+FVH S+I ++SL G+ V+F++ G+K
Sbjct: 5 MTGLVKWFDAGKGFGFITPTDGSKDVFVHFSAIQGQGND--YKSLDEGQKVEFSVESGQK 62
Query: 69 DIEAINVT 76
A+NV+
Sbjct: 63 GPSAVNVS 70
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 45/68 (66%), Gaps = 2/68 (2%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+ G+VK++D+ +GFGFIT D +D+FVH S+I ++SL G+ V+F++ G+K
Sbjct: 5 MTGLVKWFDAGKGFGFITPTDGSKDVFVHFSAIQGQGND--YKSLDEGQKVEFSVESGQK 62
Query: 170 DIEAINVT 177
A+NV+
Sbjct: 63 GPSAVNVS 70
>gi|398796672|ref|ZP_10556159.1| cold shock protein [Pantoea sp. YR343]
gi|398202674|gb|EJM89513.1| cold shock protein [Pantoea sp. YR343]
Length = 69
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 4/68 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
++G VK+++ +GFGFIT D +D+FVH S+I F++L G+ V+F I G+K
Sbjct: 4 IKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNG----FKTLAEGQSVEFEIQDGQK 59
Query: 69 DIEAINVT 76
A+NVT
Sbjct: 60 GPAAVNVT 67
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 4/68 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
++G VK+++ +GFGFIT D +D+FVH S+I F++L G+ V+F I G+K
Sbjct: 4 IKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNG----FKTLAEGQSVEFEIQDGQK 59
Query: 170 DIEAINVT 177
A+NVT
Sbjct: 60 GPAAVNVT 67
>gi|409401993|ref|ZP_11251619.1| transcriptional regulator cold shock protein [Acidocella sp.
MX-AZ02]
gi|409129311|gb|EKM99169.1| transcriptional regulator cold shock protein [Acidocella sp.
MX-AZ02]
Length = 152
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 33/160 (20%)
Query: 29 DNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEA---INVTGPNGIPVQG 85
D D+F+H +S+ FQS+ G ++ +G G+K + I+VT + P +
Sbjct: 3 DGSGDVFLHANSLQSAG----FQSVTPGSVLQIRVGQGQKGRQVNQVISVTEGDAPPPRA 58
Query: 86 -------------APKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFITRLDNK 132
AP++ + SG PAV GIVK+Y++ +GFGFI+
Sbjct: 59 PGGFGGGGFDRPRAPRAPRQQASG--------PAVEMA-GIVKWYNATKGFGFISPEAGG 109
Query: 133 EDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIE 172
+D+FVH +++ L G+ V ++ G K E
Sbjct: 110 KDVFVHATALEAAG----LSPLQEGQAVKMSVVQGSKGPE 145
Score = 39.3 bits (90), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 70
GIVK+Y++ +GFGFI+ +D+FVH +++ L G+ V ++ G K
Sbjct: 89 GIVKWYNATKGFGFISPEAGGKDVFVHATALEAAG----LSPLQEGQAVKMSVVQGSKGP 144
Query: 71 E 71
E
Sbjct: 145 E 145
>gi|123444001|ref|YP_001007971.1| major cold shock protein CspA1 [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|123444002|ref|YP_001007972.1| major cold shock protein CspA1 [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|122090962|emb|CAL13844.1| major cold shock protein CspA1 [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|122090963|emb|CAL13845.1| major cold shock protein CspA1 [Yersinia enterocolitica subsp.
enterocolitica 8081]
Length = 70
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 44/67 (65%), Gaps = 4/67 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+ G+VK++D+ +GFGFIT D +D+FVH S+I + F++L G+ V+F+I G K
Sbjct: 5 MTGLVKWFDAGKGFGFITPADGSKDVFVHFSAIQSND----FKTLDEGQKVEFSIESGAK 60
Query: 69 DIEAINV 75
A+NV
Sbjct: 61 GPSAVNV 67
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 44/67 (65%), Gaps = 4/67 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+ G+VK++D+ +GFGFIT D +D+FVH S+I + F++L G+ V+F+I G K
Sbjct: 5 MTGLVKWFDAGKGFGFITPADGSKDVFVHFSAIQSND----FKTLDEGQKVEFSIESGAK 60
Query: 170 DIEAINV 176
A+NV
Sbjct: 61 GPSAVNV 67
>gi|146312144|ref|YP_001177218.1| cold-shock DNA-binding protein family protein [Enterobacter sp.
638]
gi|145319020|gb|ABP61167.1| cold-shock DNA-binding protein family [Enterobacter sp. 638]
Length = 70
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 45/69 (65%), Gaps = 4/69 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+ G+VK+++S++GFGFIT D +D+FVH S+I + +++L G+ V+F+I G K
Sbjct: 5 MTGLVKWFNSEKGFGFITPADGSKDVFVHFSAIQSSD----YKTLDEGQKVEFSIENGAK 60
Query: 69 DIEAINVTG 77
A NVT
Sbjct: 61 GPAAANVTA 69
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 45/69 (65%), Gaps = 4/69 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+ G+VK+++S++GFGFIT D +D+FVH S+I + +++L G+ V+F+I G K
Sbjct: 5 MTGLVKWFNSEKGFGFITPADGSKDVFVHFSAIQSSD----YKTLDEGQKVEFSIENGAK 60
Query: 170 DIEAINVTG 178
A NVT
Sbjct: 61 GPAAANVTA 69
>gi|354495195|ref|XP_003509716.1| PREDICTED: protein lin-28 homolog B-like [Cricetulus griseus]
Length = 301
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 13/88 (14%)
Query: 112 GIVKFYDSKRGFGFITRLDNKE--------DIFVHKSSIVKMNPKKFFQSLGLGEIVDFN 163
G K+++ + GFGFI+ + N+E D+FVH+S + + F+SL GE V+F
Sbjct: 63 GHCKWFNVRMGFGFISMI-NREGDPLDIPVDVFVHQSKLFM----EGFRSLKEGEPVEFT 117
Query: 164 IGVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP G P G+ + P
Sbjct: 118 FKKSPKGLESIRVTGPGGSPCLGSERRP 145
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 13/84 (15%)
Query: 11 GIVKFYDSKRGFGFITRLDNKE--------DIFVHKSSIVKMNPKKFFQSLGLGEIVDFN 62
G K+++ + GFGFI+ + N+E D+FVH+S + + F+SL GE V+F
Sbjct: 63 GHCKWFNVRMGFGFISMI-NREGDPLDIPVDVFVHQSKLFM----EGFRSLKEGEPVEFT 117
Query: 63 IGVGKKDIEAINVTGPNGIPVQGA 86
K +E+I VTGP G P G+
Sbjct: 118 FKKSPKGLESIRVTGPGGSPCLGS 141
>gi|291616468|ref|YP_003519210.1| CspB [Pantoea ananatis LMG 20103]
gi|378768352|ref|YP_005196824.1| cold-shock protein [Pantoea ananatis LMG 5342]
gi|381405524|ref|ZP_09930208.1| cold-shock protein [Pantoea sp. Sc1]
gi|386014846|ref|YP_005933123.1| cold shock-like protein CspB [Pantoea ananatis AJ13355]
gi|386080477|ref|YP_005994002.1| cold-shock DNA-binding domain-containing protein CspB [Pantoea
ananatis PA13]
gi|291151498|gb|ADD76082.1| CspB [Pantoea ananatis LMG 20103]
gi|327392905|dbj|BAK10327.1| cold shock-like protein CspB [Pantoea ananatis AJ13355]
gi|354989658|gb|AER33782.1| cold-shock DNA-binding domain-containing protein CspB [Pantoea
ananatis PA13]
gi|365187837|emb|CCF10787.1| cold-shock DNA-binding domain protein [Pantoea ananatis LMG 5342]
gi|380738723|gb|EIB99786.1| cold-shock protein [Pantoea sp. Sc1]
Length = 70
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 44/69 (63%), Gaps = 4/69 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+RG VK++++++GFGFI+ D +D+FVH S+I + F+SL G+ V+F + G K
Sbjct: 5 IRGTVKWFNAEKGFGFISPQDGSKDVFVHFSAIQGTD----FRSLDEGQQVEFTVENGAK 60
Query: 69 DIEAINVTG 77
A NV G
Sbjct: 61 GPAAANVVG 69
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 44/69 (63%), Gaps = 4/69 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+RG VK++++++GFGFI+ D +D+FVH S+I + F+SL G+ V+F + G K
Sbjct: 5 IRGTVKWFNAEKGFGFISPQDGSKDVFVHFSAIQGTD----FRSLDEGQQVEFTVENGAK 60
Query: 170 DIEAINVTG 178
A NV G
Sbjct: 61 GPAAANVVG 69
>gi|448240925|ref|YP_007404978.1| DNA-binding transcriptional repressor [Serratia marcescens WW4]
gi|445211289|gb|AGE16959.1| DNA-binding transcriptional repressor [Serratia marcescens WW4]
gi|453062277|gb|EMF03268.1| cold shock protein CspE [Serratia marcescens VGH107]
Length = 69
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
++G VK+++ +GFGFIT D +D+FVH S+IV F++L G+ V+F I G K
Sbjct: 4 IKGSVKWFNESKGFGFITPEDGSKDVFVHFSAIVSNG----FKTLAEGQRVEFEITNGAK 59
Query: 69 DIEAINVTG 77
A NVT
Sbjct: 60 GPSAANVTA 68
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
++G VK+++ +GFGFIT D +D+FVH S+IV F++L G+ V+F I G K
Sbjct: 4 IKGSVKWFNESKGFGFITPEDGSKDVFVHFSAIVSNG----FKTLAEGQRVEFEITNGAK 59
Query: 170 DIEAINVTG 178
A NVT
Sbjct: 60 GPSAANVTA 68
>gi|297836502|ref|XP_002886133.1| hypothetical protein ARALYDRAFT_480687 [Arabidopsis lyrata subsp.
lyrata]
gi|297331973|gb|EFH62392.1| hypothetical protein ARALYDRAFT_480687 [Arabidopsis lyrata subsp.
lyrata]
Length = 299
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 48/81 (59%), Gaps = 5/81 (6%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD- 69
G V ++ +G+GFIT D E++FVH+SSIV ++SL +GE V+++I +G
Sbjct: 11 GKVNWFGDGKGYGFITPDDGGEELFVHQSSIVSDG----YRSLTVGESVEYSITLGSDGK 66
Query: 70 IEAINVTGPNGIPVQGAPKSS 90
+A+NVT P G + SS
Sbjct: 67 TKAVNVTAPGGGSLNKKENSS 87
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 5/71 (7%)
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD- 170
G V ++ +G+GFIT D E++FVH+SSIV ++SL +GE V+++I +G
Sbjct: 11 GKVNWFGDGKGYGFITPDDGGEELFVHQSSIVSDG----YRSLTVGESVEYSITLGSDGK 66
Query: 171 IEAINVTGPNG 181
+A+NVT P G
Sbjct: 67 TKAVNVTAPGG 77
>gi|194216294|ref|XP_001503975.2| PREDICTED: protein lin-28 homolog B-like isoform 2 [Equus caballus]
Length = 257
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 11/87 (12%)
Query: 112 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 164
G K+++ + GFGFI+ LD D+FVH+S + F+SL GE V+F
Sbjct: 39 GHCKWFNVRMGFGFISMISREGRPLDIPVDVFVHQSKLFMEG----FRSLKEGEPVEFTF 94
Query: 165 GVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP G P G+ + P
Sbjct: 95 KKSSKGLESIRVTGPGGSPCLGSERRP 121
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 11/83 (13%)
Query: 11 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
G K+++ + GFGFI+ LD D+FVH+S + F+SL GE V+F
Sbjct: 39 GHCKWFNVRMGFGFISMISREGRPLDIPVDVFVHQSKLFMEG----FRSLKEGEPVEFTF 94
Query: 64 GVGKKDIEAINVTGPNGIPVQGA 86
K +E+I VTGP G P G+
Sbjct: 95 KKSSKGLESIRVTGPGGSPCLGS 117
>gi|73973951|ref|XP_539064.2| PREDICTED: protein lin-28 homolog B [Canis lupus familiaris]
Length = 251
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 13/88 (14%)
Query: 112 GIVKFYDSKRGFGFITRLDNKE--------DIFVHKSSIVKMNPKKFFQSLGLGEIVDFN 163
G K+++ + GFGFI+ + N+E D+FVH+S + F+SL GE V+F
Sbjct: 31 GHCKWFNVRMGFGFISMI-NREGSPLDIPVDVFVHQSKLFMEG----FRSLKEGEPVEFT 85
Query: 164 IGVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP G P G+ + P
Sbjct: 86 FKKSSKGLESIRVTGPGGSPCLGSERRP 113
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 13/84 (15%)
Query: 11 GIVKFYDSKRGFGFITRLDNKE--------DIFVHKSSIVKMNPKKFFQSLGLGEIVDFN 62
G K+++ + GFGFI+ + N+E D+FVH+S + F+SL GE V+F
Sbjct: 31 GHCKWFNVRMGFGFISMI-NREGSPLDIPVDVFVHQSKLFMEG----FRSLKEGEPVEFT 85
Query: 63 IGVGKKDIEAINVTGPNGIPVQGA 86
K +E+I VTGP G P G+
Sbjct: 86 FKKSSKGLESIRVTGPGGSPCLGS 109
>gi|374429557|ref|NP_001243408.1| protein lin-28 homolog A [Ovis aries]
gi|374082028|gb|AEY81218.1| LIN28A [Ovis aries]
Length = 209
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 11/87 (12%)
Query: 112 GIVKFYDSKRGFGFIT-------RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 164
GI K+++ + GFGF++ LD D+FVH+S + F+SL GE V+F
Sbjct: 42 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEG----FRSLKEGEAVEFTF 97
Query: 165 GVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP G+ G+ + P
Sbjct: 98 KKSAKGLESIRVTGPGGVFCIGSERRP 124
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 11/78 (14%)
Query: 11 GIVKFYDSKRGFGFIT-------RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
GI K+++ + GFGF++ LD D+FVH+S + F+SL GE V+F
Sbjct: 42 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEG----FRSLKEGEAVEFTF 97
Query: 64 GVGKKDIEAINVTGPNGI 81
K +E+I VTGP G+
Sbjct: 98 KKSAKGLESIRVTGPGGV 115
>gi|424851104|ref|ZP_18275501.1| cold shock protein CspD [Rhodococcus opacus PD630]
gi|356665769|gb|EHI45840.1| cold shock protein CspD [Rhodococcus opacus PD630]
Length = 73
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query: 5 EIHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIG 64
EI+ GIVK+++S++GFGFI D D+FVH S I F++L + V F IG
Sbjct: 4 EIYMAEGIVKWFNSEKGFGFIAPEDGSADVFVHYSEIQSGG----FRTLEENQRVSFEIG 59
Query: 65 VGKKDIEAINVT 76
G K +A VT
Sbjct: 60 QGNKGPQATGVT 71
Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 107 VHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGV 166
++ GIVK+++S++GFGFI D D+FVH S I F++L + V F IG
Sbjct: 5 IYMAEGIVKWFNSEKGFGFIAPEDGSADVFVHYSEIQSGG----FRTLEENQRVSFEIGQ 60
Query: 167 GKKDIEAINVT 177
G K +A VT
Sbjct: 61 GNKGPQATGVT 71
>gi|399071889|ref|ZP_10750117.1| cold shock protein [Caulobacter sp. AP07]
gi|398043004|gb|EJL35949.1| cold shock protein [Caulobacter sp. AP07]
Length = 181
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 78/171 (45%), Gaps = 27/171 (15%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIG----VG 66
G+VK+++ +GFGFI D +D+FVH +++ + L G++V + + G
Sbjct: 4 GVVKWFNPAKGFGFIQPEDGGQDVFVHIAAVERSG----LSGLNEGDLVAYEMEEDRRSG 59
Query: 67 KKDIEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFP-------------AVHTVRGI 113
K + VTG P AP+ + + R P A + G+
Sbjct: 60 KTSAGNLRVTGQGAAPS--APRRPAARGFDSPRGGYDAPRGGGYGGGGGGGGAGESGTGV 117
Query: 114 VKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 164
VK+++S +GFGFI + DIFVH S++ + + L G+ V + +
Sbjct: 118 VKWFNSTKGFGFIQPDNGGGDIFVHISAVERAG----LRGLNEGQQVGYEL 164
>gi|395854752|ref|XP_003799843.1| PREDICTED: protein lin-28 homolog A [Otolemur garnettii]
Length = 209
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 11/87 (12%)
Query: 112 GIVKFYDSKRGFGFIT-------RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 164
GI K+++ + GFGF++ LD D+FVH+S + F+SL GE V+F
Sbjct: 42 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEG----FRSLKEGEAVEFTF 97
Query: 165 GVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP G+ G+ + P
Sbjct: 98 KKSAKGLESIRVTGPGGVFCIGSERRP 124
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 11/78 (14%)
Query: 11 GIVKFYDSKRGFGFIT-------RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
GI K+++ + GFGF++ LD D+FVH+S + F+SL GE V+F
Sbjct: 42 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEG----FRSLKEGEAVEFTF 97
Query: 64 GVGKKDIEAINVTGPNGI 81
K +E+I VTGP G+
Sbjct: 98 KKSAKGLESIRVTGPGGV 115
>gi|110634084|ref|YP_674292.1| cold-shock DNA-binding protein family protein [Chelativorans sp.
BNC1]
gi|110285068|gb|ABG63127.1| cold-shock DNA-binding protein family [Chelativorans sp. BNC1]
Length = 197
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 76/171 (44%), Gaps = 18/171 (10%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKE--DIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVG 66
V G +K++D +GFGFI D E D+ +H S + + FQ+ G V G
Sbjct: 31 VAGAIKWFDVAKGFGFILP-DIAEFGDVLLHVSCL----RRDGFQTALSGARVVCLAKRG 85
Query: 67 KKDIEAINVTGPN-GIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGF 125
K ++A V + V A + T + P R +VK+++ +GFGF
Sbjct: 86 DKGMQAFRVVSMDMSTAVHPAEDQAPRT------RITVAPESGLERALVKWFNRTKGFGF 139
Query: 126 ITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINV 176
+TR + EDIFVH ++ + L G++V G G K + A +
Sbjct: 140 LTRGEGTEDIFVHMETLRRFG----VTELRPGQVVLVRFGRGDKGLMAAEI 186
>gi|338710698|ref|XP_003362402.1| PREDICTED: protein lin-28 homolog B-like [Equus caballus]
Length = 250
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 11/87 (12%)
Query: 112 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 164
G K+++ + GFGFI+ LD D+FVH+S + F+SL GE V+F
Sbjct: 32 GHCKWFNVRMGFGFISMISREGRPLDIPVDVFVHQSKLFMEG----FRSLKEGEPVEFTF 87
Query: 165 GVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP G P G+ + P
Sbjct: 88 KKSSKGLESIRVTGPGGSPCLGSERRP 114
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 11/83 (13%)
Query: 11 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
G K+++ + GFGFI+ LD D+FVH+S + F+SL GE V+F
Sbjct: 32 GHCKWFNVRMGFGFISMISREGRPLDIPVDVFVHQSKLFMEG----FRSLKEGEPVEFTF 87
Query: 64 GVGKKDIEAINVTGPNGIPVQGA 86
K +E+I VTGP G P G+
Sbjct: 88 KKSSKGLESIRVTGPGGSPCLGS 110
>gi|297678780|ref|XP_002817240.1| PREDICTED: LOW QUALITY PROTEIN: protein lin-28 homolog B [Pongo
abelii]
Length = 269
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 13/88 (14%)
Query: 112 GIVKFYDSKRGFGFITRLDNKE--------DIFVHKSSIVKMNPKKFFQSLGLGEIVDFN 163
G K+++ + GFGFI+ + N+E D+FVH+S + F+SL GE V+F
Sbjct: 51 GHCKWFNVRMGFGFISMI-NREGSPLDIPVDVFVHQSKLFMEG----FRSLKEGEPVEFT 105
Query: 164 IGVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP G P G+ + P
Sbjct: 106 FKKSSKGLESIRVTGPGGSPCLGSERRP 133
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 13/84 (15%)
Query: 11 GIVKFYDSKRGFGFITRLDNKE--------DIFVHKSSIVKMNPKKFFQSLGLGEIVDFN 62
G K+++ + GFGFI+ + N+E D+FVH+S + F+SL GE V+F
Sbjct: 51 GHCKWFNVRMGFGFISMI-NREGSPLDIPVDVFVHQSKLFMEG----FRSLKEGEPVEFT 105
Query: 63 IGVGKKDIEAINVTGPNGIPVQGA 86
K +E+I VTGP G P G+
Sbjct: 106 FKKSSKGLESIRVTGPGGSPCLGS 129
>gi|238758372|ref|ZP_04619550.1| Cold shock-like protein cspI [Yersinia aldovae ATCC 35236]
gi|238703495|gb|EEP96034.1| Cold shock-like protein cspI [Yersinia aldovae ATCC 35236]
Length = 66
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 44/67 (65%), Gaps = 4/67 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+ G+VK++D+ +GFGFIT D +D+FVH S+I + F++L G+ V+F+I G K
Sbjct: 1 MTGLVKWFDAGKGFGFITPADGSKDVFVHFSAIQSND----FKTLDEGQKVEFSIESGAK 56
Query: 69 DIEAINV 75
A+NV
Sbjct: 57 GPSAVNV 63
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 44/67 (65%), Gaps = 4/67 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+ G+VK++D+ +GFGFIT D +D+FVH S+I + F++L G+ V+F+I G K
Sbjct: 1 MTGLVKWFDAGKGFGFITPADGSKDVFVHFSAIQSND----FKTLDEGQKVEFSIESGAK 56
Query: 170 DIEAINV 176
A+NV
Sbjct: 57 GPSAVNV 63
>gi|333907071|ref|YP_004480657.1| cold-shock DNA-binding domain-containing protein [Marinomonas
posidonica IVIA-Po-181]
gi|333477077|gb|AEF53738.1| cold-shock DNA-binding domain protein [Marinomonas posidonica
IVIA-Po-181]
Length = 69
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 5/68 (7%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VKF++ +GFGFIT+ D D+FVH S+I F++L G+ V+F + GKK
Sbjct: 5 VTGTVKFFNETKGFGFITQ-DQGPDVFVHFSAINSSG----FKTLAEGQKVEFQVAQGKK 59
Query: 69 DIEAINVT 76
EA NVT
Sbjct: 60 GPEAQNVT 67
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 5/68 (7%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VKF++ +GFGFIT+ D D+FVH S+I F++L G+ V+F + GKK
Sbjct: 5 VTGTVKFFNETKGFGFITQ-DQGPDVFVHFSAINSSG----FKTLAEGQKVEFQVAQGKK 59
Query: 170 DIEAINVT 177
EA NVT
Sbjct: 60 GPEAQNVT 67
>gi|301763343|ref|XP_002917091.1| PREDICTED: protein lin-28 homolog B-like [Ailuropoda melanoleuca]
Length = 257
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 11/87 (12%)
Query: 112 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 164
G K+++ + GFGFI+ LD D+FVH+S + F+SL GE V+F
Sbjct: 39 GHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEG----FRSLKEGEPVEFTF 94
Query: 165 GVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP G P G+ + P
Sbjct: 95 KKSSKGLESIRVTGPGGSPCLGSERRP 121
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 11/83 (13%)
Query: 11 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
G K+++ + GFGFI+ LD D+FVH+S + F+SL GE V+F
Sbjct: 39 GHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEG----FRSLKEGEPVEFTF 94
Query: 64 GVGKKDIEAINVTGPNGIPVQGA 86
K +E+I VTGP G P G+
Sbjct: 95 KKSSKGLESIRVTGPGGSPCLGS 117
>gi|431891222|gb|ELK02099.1| Lin-28 like protein A [Pteropus alecto]
Length = 204
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 12/114 (10%)
Query: 85 GAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFIT-------RLDNKEDIFV 137
G K+ E R +H GI K+++ + GFGF++ LD D+FV
Sbjct: 12 GCAKAPEEAPEDAARAAEEPQLLHGA-GICKWFNVRMGFGFLSMTARAGVALDPPVDVFV 70
Query: 138 HKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGAPKVP 191
H+S + F+SL GE V+F K +E+I VTGP G+ G+ + P
Sbjct: 71 HQSKLHMEG----FRSLKEGEAVEFTFKKSAKGLESIRVTGPGGVFCIGSERRP 120
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 11/78 (14%)
Query: 11 GIVKFYDSKRGFGFIT-------RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
GI K+++ + GFGF++ LD D+FVH+S + F+SL GE V+F
Sbjct: 38 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEG----FRSLKEGEAVEFTF 93
Query: 64 GVGKKDIEAINVTGPNGI 81
K +E+I VTGP G+
Sbjct: 94 KKSAKGLESIRVTGPGGV 111
>gi|348560546|ref|XP_003466074.1| PREDICTED: protein lin-28 homolog B-like isoform 2 [Cavia
porcellus]
Length = 274
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 13/88 (14%)
Query: 112 GIVKFYDSKRGFGFITRLDNKE--------DIFVHKSSIVKMNPKKFFQSLGLGEIVDFN 163
G K+++ + GFGFI+ + N+E D+FVH+S + F+SL GE V+F
Sbjct: 32 GHCKWFNVRMGFGFISMI-NREGSPLDIPVDVFVHQSKLFMEG----FRSLKEGEPVEFT 86
Query: 164 IGVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E++ VTGP G P G+ + P
Sbjct: 87 FKKSSKGLESLRVTGPGGTPCLGSERRP 114
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 13/84 (15%)
Query: 11 GIVKFYDSKRGFGFITRLDNKE--------DIFVHKSSIVKMNPKKFFQSLGLGEIVDFN 62
G K+++ + GFGFI+ + N+E D+FVH+S + F+SL GE V+F
Sbjct: 32 GHCKWFNVRMGFGFISMI-NREGSPLDIPVDVFVHQSKLFMEG----FRSLKEGEPVEFT 86
Query: 63 IGVGKKDIEAINVTGPNGIPVQGA 86
K +E++ VTGP G P G+
Sbjct: 87 FKKSSKGLESLRVTGPGGTPCLGS 110
>gi|344264577|ref|XP_003404368.1| PREDICTED: protein lin-28 homolog B-like [Loxodonta africana]
Length = 257
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 13/88 (14%)
Query: 112 GIVKFYDSKRGFGFITRLDNKE--------DIFVHKSSIVKMNPKKFFQSLGLGEIVDFN 163
G K+++ + GFGFI+ + N+E D+FVH+S + F+SL GE V+F
Sbjct: 39 GHCKWFNVRMGFGFISMI-NREGSPLDIPVDVFVHQSKLFMEG----FRSLKEGEPVEFT 93
Query: 164 IGVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP G P G+ + P
Sbjct: 94 FKKSSKGLESIRVTGPGGSPCLGSERRP 121
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 13/84 (15%)
Query: 11 GIVKFYDSKRGFGFITRLDNKE--------DIFVHKSSIVKMNPKKFFQSLGLGEIVDFN 62
G K+++ + GFGFI+ + N+E D+FVH+S + F+SL GE V+F
Sbjct: 39 GHCKWFNVRMGFGFISMI-NREGSPLDIPVDVFVHQSKLFMEG----FRSLKEGEPVEFT 93
Query: 63 IGVGKKDIEAINVTGPNGIPVQGA 86
K +E+I VTGP G P G+
Sbjct: 94 FKKSSKGLESIRVTGPGGSPCLGS 117
>gi|403285171|ref|XP_003933909.1| PREDICTED: protein lin-28 homolog A-like [Saimiri boliviensis
boliviensis]
Length = 209
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 11/87 (12%)
Query: 112 GIVKFYDSKRGFGFIT-------RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 164
GI K+++ + GFGF++ LD D+FVH+S + F+SL GE V+F
Sbjct: 42 GICKWFNVRMGFGFLSMTAHAGVALDPPVDVFVHQSKLHMEG----FRSLKEGEAVEFTF 97
Query: 165 GVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP G+ G+ + P
Sbjct: 98 KKSAKGLESIRVTGPGGVFCIGSERRP 124
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 11/78 (14%)
Query: 11 GIVKFYDSKRGFGFIT-------RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
GI K+++ + GFGF++ LD D+FVH+S + F+SL GE V+F
Sbjct: 42 GICKWFNVRMGFGFLSMTAHAGVALDPPVDVFVHQSKLHMEG----FRSLKEGEAVEFTF 97
Query: 64 GVGKKDIEAINVTGPNGI 81
K +E+I VTGP G+
Sbjct: 98 KKSAKGLESIRVTGPGGV 115
>gi|300723585|ref|YP_003712890.1| cold shock transcription antiterminator [Xenorhabdus nematophila
ATCC 19061]
gi|297630107|emb|CBJ90744.1| cold shock protein, transcription antiterminator, affects
expression of rpoS and uspA [Xenorhabdus nematophila
ATCC 19061]
Length = 69
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+ G VK+++ +GFGFIT D +D+FVH S+IVK F++L G+ V+F I G K
Sbjct: 4 ITGTVKWFNESKGFGFITPADGSKDVFVHFSAIVKDG----FKTLSEGQQVEFEIQDGPK 59
Query: 69 DIEAINVTG 77
A NV+
Sbjct: 60 GPAAANVSA 68
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+ G VK+++ +GFGFIT D +D+FVH S+IVK F++L G+ V+F I G K
Sbjct: 4 ITGTVKWFNESKGFGFITPADGSKDVFVHFSAIVKDG----FKTLSEGQQVEFEIQDGPK 59
Query: 170 DIEAINVTG 178
A NV+
Sbjct: 60 GPAAANVSA 68
>gi|283785560|ref|YP_003365425.1| cold shock-like protein CspC [Citrobacter rodentium ICC168]
gi|365971040|ref|YP_004952601.1| cold shock-like protein CspC [Enterobacter cloacae EcWSU1]
gi|282949014|emb|CBG88617.1| cold shock-like protein CspC [Citrobacter rodentium ICC168]
gi|365749953|gb|AEW74180.1| Cold shock-like protein CspC [Enterobacter cloacae EcWSU1]
Length = 71
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 4/72 (5%)
Query: 5 EIHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIG 64
++ ++G VK+++ +GFGFIT D +D+FVH S+I F++L G+ V+F I
Sbjct: 2 QMAKIKGQVKWFNESKGFGFITPADGSKDVFVHFSAI----QGNGFKTLAEGQNVEFEIQ 57
Query: 65 VGKKDIEAINVT 76
G+K A+NVT
Sbjct: 58 DGQKGPAAVNVT 69
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 4/68 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
++G VK+++ +GFGFIT D +D+FVH S+I F++L G+ V+F I G+K
Sbjct: 6 IKGQVKWFNESKGFGFITPADGSKDVFVHFSAI----QGNGFKTLAEGQNVEFEIQDGQK 61
Query: 170 DIEAINVT 177
A+NVT
Sbjct: 62 GPAAVNVT 69
>gi|116248187|sp|Q45KJ6.2|LN28B_MOUSE RecName: Full=Protein lin-28 homolog B; Short=Lin-28B
Length = 247
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 48/94 (51%), Gaps = 11/94 (11%)
Query: 105 PAVHTVRGIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLG 157
P V G K+++ + GFGFI+ LD D+FVH+S + F+SL G
Sbjct: 23 PQVLHGTGHCKWFNVRMGFGFISMISREGNPLDIPVDVFVHQSKLFMEG----FRSLKEG 78
Query: 158 EIVDFNIGVGKKDIEAINVTGPNGIPVQGAPKVP 191
E V+F K +E+I VTGP G P G+ + P
Sbjct: 79 EPVEFTFKKSPKGLESIRVTGPGGSPCLGSERRP 112
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 11/83 (13%)
Query: 11 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
G K+++ + GFGFI+ LD D+FVH+S + F+SL GE V+F
Sbjct: 30 GHCKWFNVRMGFGFISMISREGNPLDIPVDVFVHQSKLFMEG----FRSLKEGEPVEFTF 85
Query: 64 GVGKKDIEAINVTGPNGIPVQGA 86
K +E+I VTGP G P G+
Sbjct: 86 KKSPKGLESIRVTGPGGSPCLGS 108
>gi|390363023|ref|XP_788134.2| PREDICTED: uncharacterized protein LOC583115 [Strongylocentrotus
purpuratus]
Length = 648
Score = 52.0 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 51/173 (29%), Positives = 78/173 (45%), Gaps = 23/173 (13%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G+VK Y+ KR FGFI D +F H S++ P+K+ + +G+ V F++ VG K
Sbjct: 101 VTGVVKQYNDKRRFGFIRVNDTYNKVFFHISAV----PEKYIE---VGDEVRFDLFVGPK 153
Query: 69 DIEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFITR 128
A ++ G + S SE + V G+V Y ++R FGFI
Sbjct: 154 GYYAESI----GFLNLDSEDSDSEPDEAVNQETLL---VCCATGVVTRYLNRRRFGFIKV 206
Query: 129 LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEA--INVTGP 179
+ +F H S + F+ + + + V FN+ VG K A IN P
Sbjct: 207 DETYSKVFFHVSEVS-------FKPVAVQDQVVFNLYVGPKGYFAKCINFVSP 252
Score = 40.0 bits (92), Expect = 0.53, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 7/65 (10%)
Query: 105 PAVHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 164
P V G+VK Y+ KR FGFI D +F H S++ P+K+ + +G+ V F++
Sbjct: 96 PIHEEVTGVVKQYNDKRRFGFIRVNDTYNKVFFHISAV----PEKYIE---VGDEVRFDL 148
Query: 165 GVGKK 169
VG K
Sbjct: 149 FVGPK 153
>gi|148673097|gb|EDL05044.1| lin-28 homolog B (C. elegans), isoform CRA_b [Mus musculus]
Length = 281
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 11/94 (11%)
Query: 105 PAVHTVRGIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLG 157
P V G K+++ + GFGFI+ LD D+FVH+S + + F+SL G
Sbjct: 33 PQVLHGTGHCKWFNVRMGFGFISMISREGNPLDIPVDVFVHQSKLFM----EGFRSLKEG 88
Query: 158 EIVDFNIGVGKKDIEAINVTGPNGIPVQGAPKVP 191
E V+F K +E+I VTGP G P G+ + P
Sbjct: 89 EPVEFTFKKSPKGLESIRVTGPGGSPCLGSERRP 122
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 11/83 (13%)
Query: 11 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
G K+++ + GFGFI+ LD D+FVH+S + + F+SL GE V+F
Sbjct: 40 GHCKWFNVRMGFGFISMISREGNPLDIPVDVFVHQSKLFM----EGFRSLKEGEPVEFTF 95
Query: 64 GVGKKDIEAINVTGPNGIPVQGA 86
K +E+I VTGP G P G+
Sbjct: 96 KKSPKGLESIRVTGPGGSPCLGS 118
>gi|157816953|ref|NP_001102739.1| protein lin-28 homolog A [Rattus norvegicus]
gi|149024199|gb|EDL80696.1| rCG30757 [Rattus norvegicus]
Length = 209
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 11/87 (12%)
Query: 112 GIVKFYDSKRGFGFIT-------RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 164
GI K+++ + GFGF++ LD D+FVH+S + F+SL GE V+F
Sbjct: 42 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEG----FRSLKEGEAVEFTF 97
Query: 165 GVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP G+ G+ + P
Sbjct: 98 KKSAKGLESIRVTGPGGVFCIGSERRP 124
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 11/78 (14%)
Query: 11 GIVKFYDSKRGFGFIT-------RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
GI K+++ + GFGF++ LD D+FVH+S + F+SL GE V+F
Sbjct: 42 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEG----FRSLKEGEAVEFTF 97
Query: 64 GVGKKDIEAINVTGPNGI 81
K +E+I VTGP G+
Sbjct: 98 KKSAKGLESIRVTGPGGV 115
>gi|213983151|ref|NP_001135490.1| lin-28 homolog B [Xenopus (Silurana) tropicalis]
gi|195539937|gb|AAI67886.1| Unknown (protein for MGC:135309) [Xenopus (Silurana) tropicalis]
Length = 253
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 11/94 (11%)
Query: 105 PAVHTVRGIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLG 157
P V G K+++ + GFGFI+ L+N D+FVH+S + F+SL G
Sbjct: 28 PQVLRGSGHCKWFNVRMGFGFISMTSREGSPLENPVDVFVHQSKLYMEG----FRSLKEG 83
Query: 158 EIVDFNIGVGKKDIEAINVTGPNGIPVQGAPKVP 191
E V+F K E++ VTGP G P G + P
Sbjct: 84 EPVEFTFKKSSKGFESLRVTGPGGNPCLGNERRP 117
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 11/82 (13%)
Query: 11 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
G K+++ + GFGFI+ L+N D+FVH+S + F+SL GE V+F
Sbjct: 35 GHCKWFNVRMGFGFISMTSREGSPLENPVDVFVHQSKLYMEG----FRSLKEGEPVEFTF 90
Query: 64 GVGKKDIEAINVTGPNGIPVQG 85
K E++ VTGP G P G
Sbjct: 91 KKSSKGFESLRVTGPGGNPCLG 112
>gi|178056460|ref|NP_001116605.1| protein lin-28 homolog A [Sus scrofa]
gi|169627101|gb|ACA58282.1| LIN28 [Sus scrofa]
Length = 205
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 12/114 (10%)
Query: 85 GAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFIT-------RLDNKEDIFV 137
G K+ E R +H GI K+++ + GFGF++ LD D+FV
Sbjct: 12 GCAKAPEEAPEDAARAAEEPQLLHGA-GICKWFNVRMGFGFLSMTARAGVALDPPVDVFV 70
Query: 138 HKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGAPKVP 191
H+S + F+SL GE V+F K +E+I VTGP G+ G+ + P
Sbjct: 71 HQSKLHMEG----FRSLKEGEAVEFTFKKSAKGLESIRVTGPGGVFCIGSERRP 120
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 11/78 (14%)
Query: 11 GIVKFYDSKRGFGFIT-------RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
GI K+++ + GFGF++ LD D+FVH+S + F+SL GE V+F
Sbjct: 38 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEG----FRSLKEGEAVEFTF 93
Query: 64 GVGKKDIEAINVTGPNGI 81
K +E+I VTGP G+
Sbjct: 94 KKSAKGLESIRVTGPGGV 111
>gi|319405712|emb|CBI79335.1| cold shock protein [Bartonella sp. AR 15-3]
Length = 191
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 82/192 (42%), Gaps = 39/192 (20%)
Query: 5 EIHTVRGIVKFYDSKRGFGFIT-RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
EI + G++K++D +G+GFI DI +H V + + FQ+ G V +
Sbjct: 22 EIIEISGVIKWFDGSKGYGFIIPDFPGLPDILLH----VTVMRRDGFQTALEGAKVICVV 77
Query: 64 GVGKKDIEAINV--------TGPNGIPVQG----APKSSSETVSGTYRNDSFFPAVHTVR 111
++ ++ I V T P+ IP + P+S E R
Sbjct: 78 KQTERGLKCIQVKSIDCSSATHPSEIPARTHVVVTPESGLE------------------R 119
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 171
IVK+++ ++GFGF++R EDIF+H + + L G++V G GKK +
Sbjct: 120 AIVKWFNREKGFGFLSRGQGTEDIFIHMEILRRFG----LAELRSGQVVLVRFGKGKKGL 175
Query: 172 EAINVTGPNGIP 183
+ +P
Sbjct: 176 MTAEIYPDIALP 187
>gi|254477246|ref|ZP_05090632.1| cold shock DNA-binding domain protein [Ruegeria sp. R11]
gi|214031489|gb|EEB72324.1| cold shock DNA-binding domain protein [Ruegeria sp. R11]
Length = 171
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 74/172 (43%), Gaps = 14/172 (8%)
Query: 6 IHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGV 65
+ +RG+VK++D +GFGF+ + DI +H + + + E+V
Sbjct: 1 MQQIRGLVKWFDPTKGFGFVVSDEGGPDILLHVNVLRNFGQSSIADGAQV-ELVTHRTER 59
Query: 66 GKKDIEAINVTGPNGIPVQGAPKSSSETVSGTYRND-SFFPAVHTVRGIVKFYDSKRGFG 124
G + +E I++T P + S +S D A + VK++D +GFG
Sbjct: 60 GVQAVEVISITPPE--------RDDSPVLSDFAEMDPKALYAEPLLPARVKWFDKGKGFG 111
Query: 125 FITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINV 176
F ED+F+H V++ + L GE + + GK+ A+ V
Sbjct: 112 FANVFGRPEDVFLH----VEVLRQSGLSELQPGEALGMRVIEGKRGRMAVEV 159
>gi|440905961|gb|ELR56277.1| Protein lin-28-like protein A [Bos grunniens mutus]
Length = 205
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 12/114 (10%)
Query: 85 GAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFIT-------RLDNKEDIFV 137
G K+ E R +H GI K+++ + GFGF++ LD D+FV
Sbjct: 12 GCAKAPEEAPEDAARAAEEPQLLHGA-GICKWFNVRMGFGFLSMTARAGVALDPPVDVFV 70
Query: 138 HKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGAPKVP 191
H+S + F+SL GE V+F K +E+I VTGP G+ G+ + P
Sbjct: 71 HQSKLHMEG----FRSLKEGEAVEFTFKKSAKGLESIRVTGPGGVFCIGSERRP 120
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 11/78 (14%)
Query: 11 GIVKFYDSKRGFGFIT-------RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
GI K+++ + GFGF++ LD D+FVH+S + F+SL GE V+F
Sbjct: 38 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEG----FRSLKEGEAVEFTF 93
Query: 64 GVGKKDIEAINVTGPNGI 81
K +E+I VTGP G+
Sbjct: 94 KKSAKGLESIRVTGPGGV 111
>gi|395816236|ref|XP_003781612.1| PREDICTED: protein lin-28 homolog B [Otolemur garnettii]
Length = 251
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 13/88 (14%)
Query: 112 GIVKFYDSKRGFGFITRLDNKE--------DIFVHKSSIVKMNPKKFFQSLGLGEIVDFN 163
G K+++ + GFGFI+ + N+E D+FVH+S + F+SL GE V+F
Sbjct: 33 GHCKWFNVRMGFGFISMI-NREGSPLDIPVDVFVHQSKLFMEG----FRSLKEGEPVEFT 87
Query: 164 IGVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP G P G+ + P
Sbjct: 88 FKKSSKGLESIRVTGPGGSPCLGSERRP 115
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 13/84 (15%)
Query: 11 GIVKFYDSKRGFGFITRLDNKE--------DIFVHKSSIVKMNPKKFFQSLGLGEIVDFN 62
G K+++ + GFGFI+ + N+E D+FVH+S + F+SL GE V+F
Sbjct: 33 GHCKWFNVRMGFGFISMI-NREGSPLDIPVDVFVHQSKLFMEG----FRSLKEGEPVEFT 87
Query: 63 IGVGKKDIEAINVTGPNGIPVQGA 86
K +E+I VTGP G P G+
Sbjct: 88 FKKSSKGLESIRVTGPGGSPCLGS 111
>gi|334324109|ref|XP_001378246.2| PREDICTED: protein lin-28 homolog B-like [Monodelphis domestica]
Length = 284
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 11/87 (12%)
Query: 112 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 164
G K+++ + GFGFI+ LD D+FVH+S + F+SL GE V+F
Sbjct: 66 GHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLYMEG----FRSLKEGEPVEFTF 121
Query: 165 GVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP G P G+ + P
Sbjct: 122 KKSSKGLESIRVTGPGGNPCLGSERRP 148
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 11/83 (13%)
Query: 11 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
G K+++ + GFGFI+ LD D+FVH+S + F+SL GE V+F
Sbjct: 66 GHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLYMEG----FRSLKEGEPVEFTF 121
Query: 64 GVGKKDIEAINVTGPNGIPVQGA 86
K +E+I VTGP G P G+
Sbjct: 122 KKSSKGLESIRVTGPGGNPCLGS 144
>gi|332218575|ref|XP_003258430.1| PREDICTED: protein lin-28 homolog B [Nomascus leucogenys]
Length = 250
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 13/88 (14%)
Query: 112 GIVKFYDSKRGFGFITRLDNKE--------DIFVHKSSIVKMNPKKFFQSLGLGEIVDFN 163
G K+++ + GFGFI+ + N+E D+FVH+S + F+SL GE V+F
Sbjct: 32 GHCKWFNVRMGFGFISMI-NREGSPLDIPVDVFVHQSKLFMEG----FRSLKEGEPVEFT 86
Query: 164 IGVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP G P G+ + P
Sbjct: 87 FKKSSKGLESIRVTGPGGSPCLGSERRP 114
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 15/92 (16%)
Query: 5 EIHTVRGI--VKFYDSKRGFGFITRLDNKE--------DIFVHKSSIVKMNPKKFFQSLG 54
E +RG K+++ + GFGFI+ + N+E D+FVH+S + F+SL
Sbjct: 24 ESQVLRGTGHCKWFNVRMGFGFISMI-NREGSPLDIPVDVFVHQSKLFMEG----FRSLK 78
Query: 55 LGEIVDFNIGVGKKDIEAINVTGPNGIPVQGA 86
GE V+F K +E+I VTGP G P G+
Sbjct: 79 EGEPVEFTFKKSSKGLESIRVTGPGGSPCLGS 110
>gi|260904248|ref|ZP_05912570.1| cold-shock DNA-binding domain protein [Brevibacterium linens BL2]
Length = 67
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 48/68 (70%), Gaps = 4/68 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+G VK++++++G+GFIT N +D+FVH S+I +M+ +++L G+ V+F +G G+K
Sbjct: 2 AQGTVKWFNAEKGYGFITLEGNNQDVFVHWSAI-QMDG---YRALEEGQQVEFEVGEGQK 57
Query: 69 DIEAINVT 76
+A +VT
Sbjct: 58 GPQAESVT 65
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 48/68 (70%), Gaps = 4/68 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+G VK++++++G+GFIT N +D+FVH S+I +M+ +++L G+ V+F +G G+K
Sbjct: 2 AQGTVKWFNAEKGYGFITLEGNNQDVFVHWSAI-QMDG---YRALEEGQQVEFEVGEGQK 57
Query: 170 DIEAINVT 177
+A +VT
Sbjct: 58 GPQAESVT 65
>gi|13375938|ref|NP_078950.1| protein lin-28 homolog A [Homo sapiens]
gi|74752750|sp|Q9H9Z2.1|LN28A_HUMAN RecName: Full=Protein lin-28 homolog A; Short=Lin-28A; AltName:
Full=Zinc finger CCHC domain-containing protein 1
gi|21842304|gb|AAM77751.1|AF521099_1 RNA-binding protein LIN-28 [Homo sapiens]
gi|10433955|dbj|BAB14075.1| unnamed protein product [Homo sapiens]
gi|20306208|gb|AAH28566.1| LIN28 protein [Homo sapiens]
gi|119628219|gb|EAX07814.1| lin-28 homolog (C. elegans), isoform CRA_a [Homo sapiens]
gi|123993445|gb|ABM84324.1| lin-28 homolog (C. elegans) [synthetic construct]
gi|124000419|gb|ABM87718.1| lin-28 homolog (C. elegans) [synthetic construct]
gi|261860154|dbj|BAI46599.1| lin-28 homolog [synthetic construct]
Length = 209
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 11/87 (12%)
Query: 112 GIVKFYDSKRGFGFIT-------RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 164
GI K+++ + GFGF++ LD D+FVH+S + F+SL GE V+F
Sbjct: 42 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEG----FRSLKEGEAVEFTF 97
Query: 165 GVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP G+ G+ + P
Sbjct: 98 KKSAKGLESIRVTGPGGVFCIGSERRP 124
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 11/78 (14%)
Query: 11 GIVKFYDSKRGFGFIT-------RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
GI K+++ + GFGF++ LD D+FVH+S + F+SL GE V+F
Sbjct: 42 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEG----FRSLKEGEAVEFTF 97
Query: 64 GVGKKDIEAINVTGPNGI 81
K +E+I VTGP G+
Sbjct: 98 KKSAKGLESIRVTGPGGV 115
>gi|304396175|ref|ZP_07378057.1| cold-shock DNA-binding domain protein [Pantoea sp. aB]
gi|308187103|ref|YP_003931234.1| cold shock-like protein cspC [Pantoea vagans C9-1]
gi|372277328|ref|ZP_09513364.1| cold shock-like protein cspC [Pantoea sp. SL1_M5]
gi|381404303|ref|ZP_09928987.1| cold shock-like protein cspC [Pantoea sp. Sc1]
gi|390434813|ref|ZP_10223351.1| cold shock-like protein cspC [Pantoea agglomerans IG1]
gi|440759587|ref|ZP_20938720.1| Cold shock protein CspC [Pantoea agglomerans 299R]
gi|304356544|gb|EFM20909.1| cold-shock DNA-binding domain protein [Pantoea sp. aB]
gi|308057613|gb|ADO09785.1| Cold shock-like protein cspC [Pantoea vagans C9-1]
gi|380737502|gb|EIB98565.1| cold shock-like protein cspC [Pantoea sp. Sc1]
gi|436426656|gb|ELP24360.1| Cold shock protein CspC [Pantoea agglomerans 299R]
Length = 69
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 4/68 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
++G VK+++ +GFGFIT D +D+FVH S+I F++L G+ V+F I G+K
Sbjct: 4 IKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNG----FKTLAEGQSVEFEIQDGQK 59
Query: 69 DIEAINVT 76
A+NVT
Sbjct: 60 GPAAVNVT 67
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 4/68 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
++G VK+++ +GFGFIT D +D+FVH S+I F++L G+ V+F I G+K
Sbjct: 4 IKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNG----FKTLAEGQSVEFEIQDGQK 59
Query: 170 DIEAINVT 177
A+NVT
Sbjct: 60 GPAAVNVT 67
>gi|300796242|ref|NP_001179986.1| protein lin-28 homolog A [Bos taurus]
gi|296490058|tpg|DAA32171.1| TPA: lin-28 homolog [Bos taurus]
Length = 205
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 12/114 (10%)
Query: 85 GAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFIT-------RLDNKEDIFV 137
G K+ E R +H GI K+++ + GFGF++ LD D+FV
Sbjct: 12 GCAKAPEEAPEDAARAAEEPQLLHGA-GICKWFNVRMGFGFLSMTARAGVALDPPVDVFV 70
Query: 138 HKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGAPKVP 191
H+S + F+SL GE V+F K +E+I VTGP G+ G+ + P
Sbjct: 71 HQSKLHMEG----FRSLKEGEAVEFTFKKSAKGLESIRVTGPGGVFCIGSERRP 120
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 11/78 (14%)
Query: 11 GIVKFYDSKRGFGFIT-------RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
GI K+++ + GFGF++ LD D+FVH+S + F+SL GE V+F
Sbjct: 38 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEG----FRSLKEGEAVEFTF 93
Query: 64 GVGKKDIEAINVTGPNGI 81
K +E+I VTGP G+
Sbjct: 94 KKSAKGLESIRVTGPGGV 111
>gi|291045286|ref|NP_001166916.1| protein lin-28 homolog A [Felis catus]
gi|73950555|ref|XP_854985.1| PREDICTED: protein lin-28 homolog A [Canis lupus familiaris]
gi|264670123|gb|ACY72346.1| lin-28-like protein [Felis catus]
Length = 206
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 12/114 (10%)
Query: 85 GAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFIT-------RLDNKEDIFV 137
G K+ E R +H GI K+++ + GFGF++ LD D+FV
Sbjct: 12 GCAKAPEEAPEDAARAAEEPQLLHGA-GICKWFNVRMGFGFLSMTARAGVALDPPVDVFV 70
Query: 138 HKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGAPKVP 191
H+S + F+SL GE V+F K +E+I VTGP G+ G+ + P
Sbjct: 71 HQSKLHMEG----FRSLKEGEAVEFTFKKSAKGLESIRVTGPGGVFCIGSERRP 120
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 11/78 (14%)
Query: 11 GIVKFYDSKRGFGFIT-------RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
GI K+++ + GFGF++ LD D+FVH+S + F+SL GE V+F
Sbjct: 38 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEG----FRSLKEGEAVEFTF 93
Query: 64 GVGKKDIEAINVTGPNGI 81
K +E+I VTGP G+
Sbjct: 94 KKSAKGLESIRVTGPGGV 111
>gi|114608664|ref|XP_001143220.1| PREDICTED: protein lin-28 homolog B isoform 2 [Pan troglodytes]
gi|397507853|ref|XP_003824396.1| PREDICTED: protein lin-28 homolog B [Pan paniscus]
Length = 250
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 13/88 (14%)
Query: 112 GIVKFYDSKRGFGFITRLDNKE--------DIFVHKSSIVKMNPKKFFQSLGLGEIVDFN 163
G K+++ + GFGFI+ + N+E D+FVH+S + F+SL GE V+F
Sbjct: 32 GHCKWFNVRMGFGFISMI-NREGSPLDIPVDVFVHQSKLFMEG----FRSLKEGEPVEFT 86
Query: 164 IGVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP G P G+ + P
Sbjct: 87 FKKSSKGLESIRVTGPGGSPCLGSERRP 114
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 15/92 (16%)
Query: 5 EIHTVRGI--VKFYDSKRGFGFITRLDNKE--------DIFVHKSSIVKMNPKKFFQSLG 54
E +RG K+++ + GFGFI+ + N+E D+FVH+S + F+SL
Sbjct: 24 ESQVLRGTGHCKWFNVRMGFGFISMI-NREGSPLDIPVDVFVHQSKLFMEG----FRSLK 78
Query: 55 LGEIVDFNIGVGKKDIEAINVTGPNGIPVQGA 86
GE V+F K +E+I VTGP G P G+
Sbjct: 79 EGEPVEFTFKKSSKGLESIRVTGPGGSPCLGS 110
>gi|402853517|ref|XP_003891439.1| PREDICTED: protein lin-28 homolog A [Papio anubis]
Length = 209
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 11/87 (12%)
Query: 112 GIVKFYDSKRGFGFIT-------RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 164
GI K+++ + GFGF++ LD D+FVH+S + F+SL GE V+F
Sbjct: 42 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEG----FRSLKEGEAVEFTF 97
Query: 165 GVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP G+ G+ + P
Sbjct: 98 KKSAKGLESIRVTGPGGVFCIGSERRP 124
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 11/78 (14%)
Query: 11 GIVKFYDSKRGFGFIT-------RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
GI K+++ + GFGF++ LD D+FVH+S + F+SL GE V+F
Sbjct: 42 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEG----FRSLKEGEAVEFTF 97
Query: 64 GVGKKDIEAINVTGPNGI 81
K +E+I VTGP G+
Sbjct: 98 KKSAKGLESIRVTGPGGV 115
>gi|397466557|ref|XP_003805019.1| PREDICTED: protein lin-28 homolog A-like [Pan paniscus]
gi|426328492|ref|XP_004025286.1| PREDICTED: protein lin-28 homolog A [Gorilla gorilla gorilla]
Length = 209
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 11/87 (12%)
Query: 112 GIVKFYDSKRGFGFIT-------RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 164
GI K+++ + GFGF++ LD D+FVH+S + F+SL GE V+F
Sbjct: 42 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEG----FRSLKEGEAVEFTF 97
Query: 165 GVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP G+ G+ + P
Sbjct: 98 KKSAKGLESIRVTGPGGVFCIGSERRP 124
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 11/78 (14%)
Query: 11 GIVKFYDSKRGFGFIT-------RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
GI K+++ + GFGF++ LD D+FVH+S + F+SL GE V+F
Sbjct: 42 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEG----FRSLKEGEAVEFTF 97
Query: 64 GVGKKDIEAINVTGPNGI 81
K +E+I VTGP G+
Sbjct: 98 KKSAKGLESIRVTGPGGV 115
>gi|426354100|ref|XP_004044506.1| PREDICTED: protein lin-28 homolog B [Gorilla gorilla gorilla]
Length = 250
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 13/88 (14%)
Query: 112 GIVKFYDSKRGFGFITRLDNKE--------DIFVHKSSIVKMNPKKFFQSLGLGEIVDFN 163
G K+++ + GFGFI+ + N+E D+FVH+S + F+SL GE V+F
Sbjct: 32 GHCKWFNVRMGFGFISMI-NREGSPLDIPVDVFVHQSKLFMEG----FRSLKEGEPVEFT 86
Query: 164 IGVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP G P G+ + P
Sbjct: 87 FKKSSKGLESIRVTGPGGSPCLGSERRP 114
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 15/92 (16%)
Query: 5 EIHTVRGI--VKFYDSKRGFGFITRLDNKE--------DIFVHKSSIVKMNPKKFFQSLG 54
E +RG K+++ + GFGFI+ + N+E D+FVH+S + F+SL
Sbjct: 24 ESQVLRGTGHCKWFNVRMGFGFISMI-NREGSPLDIPVDVFVHQSKLFMEG----FRSLK 78
Query: 55 LGEIVDFNIGVGKKDIEAINVTGPNGIPVQGA 86
GE V+F K +E+I VTGP G P G+
Sbjct: 79 EGEPVEFTFKKSSKGLESIRVTGPGGSPCLGS 110
>gi|51972214|ref|NP_001004317.1| protein lin-28 homolog B [Homo sapiens]
gi|74758701|sp|Q6ZN17.1|LN28B_HUMAN RecName: Full=Protein lin-28 homolog B; Short=Lin-28B
gi|47077279|dbj|BAD18558.1| unnamed protein product [Homo sapiens]
gi|71724934|gb|AAZ38897.1| LIN28B [Homo sapiens]
gi|119568819|gb|EAW48434.1| lin-28 homolog B (C. elegans), isoform CRA_b [Homo sapiens]
gi|187953595|gb|AAI37527.1| Lin-28 homolog B (C. elegans) [Homo sapiens]
gi|223459806|gb|AAI37528.1| Lin-28 homolog B (C. elegans) [Homo sapiens]
Length = 250
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 13/88 (14%)
Query: 112 GIVKFYDSKRGFGFITRLDNKE--------DIFVHKSSIVKMNPKKFFQSLGLGEIVDFN 163
G K+++ + GFGFI+ + N+E D+FVH+S + F+SL GE V+F
Sbjct: 32 GHCKWFNVRMGFGFISMI-NREGSPLDIPVDVFVHQSKLFMEG----FRSLKEGEPVEFT 86
Query: 164 IGVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP G P G+ + P
Sbjct: 87 FKKSSKGLESIRVTGPGGSPCLGSERRP 114
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 15/92 (16%)
Query: 5 EIHTVRGI--VKFYDSKRGFGFITRLDNKE--------DIFVHKSSIVKMNPKKFFQSLG 54
E +RG K+++ + GFGFI+ + N+E D+FVH+S + F+SL
Sbjct: 24 ESQVLRGTGHCKWFNVRMGFGFISMI-NREGSPLDIPVDVFVHQSKLFMEG----FRSLK 78
Query: 55 LGEIVDFNIGVGKKDIEAINVTGPNGIPVQGA 86
GE V+F K +E+I VTGP G P G+
Sbjct: 79 EGEPVEFTFKKSSKGLESIRVTGPGGSPCLGS 110
>gi|296207133|ref|XP_002750510.1| PREDICTED: protein lin-28 homolog A-like [Callithrix jacchus]
Length = 209
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 11/87 (12%)
Query: 112 GIVKFYDSKRGFGFIT-------RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 164
GI K+++ + GFGF++ LD D+FVH+S + F+SL GE V+F
Sbjct: 42 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEG----FRSLKEGEAVEFTF 97
Query: 165 GVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP G+ G+ + P
Sbjct: 98 KKSAKGLESIRVTGPGGVFCIGSERRP 124
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 11/78 (14%)
Query: 11 GIVKFYDSKRGFGFIT-------RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
GI K+++ + GFGF++ LD D+FVH+S + F+SL GE V+F
Sbjct: 42 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEG----FRSLKEGEAVEFTF 97
Query: 64 GVGKKDIEAINVTGPNGI 81
K +E+I VTGP G+
Sbjct: 98 KKSAKGLESIRVTGPGGV 115
>gi|281352788|gb|EFB28372.1| hypothetical protein PANDA_005261 [Ailuropoda melanoleuca]
Length = 276
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 13/88 (14%)
Query: 112 GIVKFYDSKRGFGFITRLDNKE--------DIFVHKSSIVKMNPKKFFQSLGLGEIVDFN 163
G K+++ + GFGFI+ + N+E D+FVH+S + F+SL GE V+F
Sbjct: 58 GHCKWFNVRMGFGFISMI-NREGSPLDIPVDVFVHQSKLFMEG----FRSLKEGEPVEFT 112
Query: 164 IGVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP G P G+ + P
Sbjct: 113 FKKSSKGLESIRVTGPGGSPCLGSERRP 140
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 13/84 (15%)
Query: 11 GIVKFYDSKRGFGFITRLDNKE--------DIFVHKSSIVKMNPKKFFQSLGLGEIVDFN 62
G K+++ + GFGFI+ + N+E D+FVH+S + F+SL GE V+F
Sbjct: 58 GHCKWFNVRMGFGFISMI-NREGSPLDIPVDVFVHQSKLFMEG----FRSLKEGEPVEFT 112
Query: 63 IGVGKKDIEAINVTGPNGIPVQGA 86
K +E+I VTGP G P G+
Sbjct: 113 FKKSSKGLESIRVTGPGGSPCLGS 136
>gi|160880994|ref|YP_001559962.1| cold-shock DNA-binding domain-containing protein [Clostridium
phytofermentans ISDg]
gi|160429660|gb|ABX43223.1| cold-shock DNA-binding domain protein [Clostridium
phytofermentans ISDg]
Length = 67
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 43/67 (64%), Gaps = 4/67 (5%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 69
+G VK++++++GFGFIT + ED+FVH S I + F+SL G+ V F I G +
Sbjct: 3 KGTVKWFNAQKGFGFITNSETGEDVFVHFSGI----ASEGFKSLEEGQNVTFEITKGARG 58
Query: 70 IEAINVT 76
++A NV+
Sbjct: 59 MQATNVS 65
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 43/67 (64%), Gaps = 4/67 (5%)
Query: 111 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 170
+G VK++++++GFGFIT + ED+FVH S I + F+SL G+ V F I G +
Sbjct: 3 KGTVKWFNAQKGFGFITNSETGEDVFVHFSGI----ASEGFKSLEEGQNVTFEITKGARG 58
Query: 171 IEAINVT 177
++A NV+
Sbjct: 59 MQATNVS 65
>gi|226227592|ref|YP_002761698.1| cold shock protein [Gemmatimonas aurantiaca T-27]
gi|226090783|dbj|BAH39228.1| cold shock protein [Gemmatimonas aurantiaca T-27]
Length = 69
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 41/66 (62%), Gaps = 4/66 (6%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 70
G VK+++ +GFGFIT D ++D FVH S+I F+SL GE V+F+I G+K
Sbjct: 5 GTVKWFNDAKGFGFITPSDGQKDCFVHHSAIQGNG----FKSLTEGETVEFDIVQGQKGP 60
Query: 71 EAINVT 76
A NVT
Sbjct: 61 AAENVT 66
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 41/66 (62%), Gaps = 4/66 (6%)
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 171
G VK+++ +GFGFIT D ++D FVH S+I F+SL GE V+F+I G+K
Sbjct: 5 GTVKWFNDAKGFGFITPSDGQKDCFVHHSAIQGNG----FKSLTEGETVEFDIVQGQKGP 60
Query: 172 EAINVT 177
A NVT
Sbjct: 61 AAENVT 66
>gi|167467804|ref|ZP_02332508.1| major cold shock protein Cspa1 [Yersinia pestis FV-1]
Length = 70
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 47/69 (68%), Gaps = 4/69 (5%)
Query: 7 HTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVG 66
+T+ G+VK++D+ +GFGFI+ D +D+FVH S+I + +++L G+ V+F+I G
Sbjct: 3 NTMTGLVKWFDAGKGFGFISPADGSKDVFVHFSAIQGND----YKTLDEGQNVEFSIEQG 58
Query: 67 KKDIEAINV 75
+K A+NV
Sbjct: 59 QKGPSAVNV 67
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 47/69 (68%), Gaps = 4/69 (5%)
Query: 108 HTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVG 167
+T+ G+VK++D+ +GFGFI+ D +D+FVH S+I + +++L G+ V+F+I G
Sbjct: 3 NTMTGLVKWFDAGKGFGFISPADGSKDVFVHFSAIQGND----YKTLDEGQNVEFSIEQG 58
Query: 168 KKDIEAINV 176
+K A+NV
Sbjct: 59 QKGPSAVNV 67
>gi|145300857|ref|YP_001143698.1| major cold shock protein [Aeromonas salmonicida subsp.
salmonicida A449]
gi|330828121|ref|YP_004391073.1| cold shock-like protein CspI [Aeromonas veronii B565]
gi|406674624|ref|ZP_11081818.1| cold shock-like protein CspB [Aeromonas veronii AMC35]
gi|418361413|ref|ZP_12962068.1| Cold shock-like protein cspI [Aeromonas salmonicida subsp.
salmonicida 01-B526]
gi|423203402|ref|ZP_17189980.1| cold shock-like protein CspB [Aeromonas veronii AER39]
gi|423204194|ref|ZP_17190750.1| cold shock-like protein CspB [Aeromonas veronii AMC34]
gi|423211192|ref|ZP_17197745.1| cold shock-like protein CspB [Aeromonas veronii AER397]
gi|142853629|gb|ABO91950.1| major cold shock protein [Aeromonas salmonicida subsp.
salmonicida A449]
gi|328803257|gb|AEB48456.1| Cold shock-like protein cspI [Aeromonas veronii B565]
gi|356687443|gb|EHI52025.1| Cold shock-like protein cspI [Aeromonas salmonicida subsp.
salmonicida 01-B526]
gi|404613146|gb|EKB10182.1| cold shock-like protein CspB [Aeromonas veronii AER39]
gi|404613787|gb|EKB10800.1| cold shock-like protein CspB [Aeromonas veronii AER397]
gi|404627399|gb|EKB24200.1| cold shock-like protein CspB [Aeromonas veronii AMC34]
gi|404628627|gb|EKB25402.1| cold shock-like protein CspB [Aeromonas veronii AMC35]
Length = 70
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 44/69 (63%), Gaps = 4/69 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+ G VKF+++++GFGFI+ D +D+FVH S+I + F++L G+ V+F I G+K
Sbjct: 5 MTGTVKFFNAEKGFGFISPADGSKDVFVHFSAIQSTS----FKTLDEGQRVEFTIEQGQK 60
Query: 69 DIEAINVTG 77
A NV G
Sbjct: 61 GPAAANVVG 69
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 44/69 (63%), Gaps = 4/69 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+ G VKF+++++GFGFI+ D +D+FVH S+I + F++L G+ V+F I G+K
Sbjct: 5 MTGTVKFFNAEKGFGFISPADGSKDVFVHFSAIQSTS----FKTLDEGQRVEFTIEQGQK 60
Query: 170 DIEAINVTG 178
A NV G
Sbjct: 61 GPAAANVVG 69
>gi|90424288|ref|YP_532658.1| cold-shock DNA-binding domain-containing protein [Rhodopseudomonas
palustris BisB18]
gi|90106302|gb|ABD88339.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris
BisB18]
Length = 220
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 77/177 (43%), Gaps = 17/177 (9%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGL-GEIVDFNIGVGK 67
+ G++K++D+ +G+GFI + D+ +H + + + + ++ + E V G
Sbjct: 54 ISGVIKWFDASKGYGFIVPDNGSPDVLLHVTVLRRDGYQTAYEGARIICECV--QRAKGY 111
Query: 68 KDIEAINVTGPNGI-PVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFI 126
+ +++ I P Q P + +V+ P R VK+++ RGFGF+
Sbjct: 112 QAFRVVSMDESTAIHPAQMLPPRTHVSVT---------PTSGLERAQVKWFNRLRGFGFL 162
Query: 127 TRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIP 183
T + DIFVH ++ + L G+ V G G K + A + G P
Sbjct: 163 TCGEGTPDIFVHMETLRRFG----MTELRPGQYVLVRFGPGSKGMMAAEIQPEGGAP 215
>gi|363418471|gb|AEW23224.1| Lin28 [Bubalus bubalis]
Length = 205
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 11/87 (12%)
Query: 112 GIVKFYDSKRGFGFIT-------RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 164
GI K+++ + GFGF++ LD D+FVH+S + F+SL GE V+F
Sbjct: 38 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEG----FRSLKEGEAVEFTF 93
Query: 165 GVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP G+ G+ + P
Sbjct: 94 KKSAKGLESIRVTGPGGVFCIGSERRP 120
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 11/78 (14%)
Query: 11 GIVKFYDSKRGFGFIT-------RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
GI K+++ + GFGF++ LD D+FVH+S + F+SL GE V+F
Sbjct: 38 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEG----FRSLKEGEAVEFTF 93
Query: 64 GVGKKDIEAINVTGPNGI 81
K +E+I VTGP G+
Sbjct: 94 KKSAKGLESIRVTGPGGV 111
>gi|239809492|gb|ACS26216.1| unknown [uncultured bacterium]
Length = 69
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 42/68 (61%), Gaps = 5/68 (7%)
Query: 8 TVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGK 67
TV G VKF++ +GFGFI R +N D+FVH S+I F++L G+ V F +G G+
Sbjct: 4 TVTGTVKFFNEAKGFGFIQR-ENGPDVFVHFSAIQGAG----FKTLAEGQKVQFTVGQGQ 58
Query: 68 KDIEAINV 75
K +A NV
Sbjct: 59 KGPQAENV 66
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 42/68 (61%), Gaps = 5/68 (7%)
Query: 109 TVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGK 168
TV G VKF++ +GFGFI R +N D+FVH S+I F++L G+ V F +G G+
Sbjct: 4 TVTGTVKFFNEAKGFGFIQR-ENGPDVFVHFSAIQGAG----FKTLAEGQKVQFTVGQGQ 58
Query: 169 KDIEAINV 176
K +A NV
Sbjct: 59 KGPQAENV 66
>gi|399992859|ref|YP_006573099.1| cold shock protein [Phaeobacter gallaeciensis DSM 17395 = CIP
105210]
gi|400754536|ref|YP_006562904.1| cold shock protein [Phaeobacter gallaeciensis 2.10]
gi|398653689|gb|AFO87659.1| putative cold shock protein [Phaeobacter gallaeciensis 2.10]
gi|398657414|gb|AFO91380.1| putative cold shock protein [Phaeobacter gallaeciensis DSM 17395 =
CIP 105210]
Length = 178
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 77/173 (44%), Gaps = 16/173 (9%)
Query: 6 IHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGV 65
+ +RG+VK++D +GFGF+ + DI +H + + + E+V
Sbjct: 8 LQQIRGLVKWFDPTKGFGFVVSDEGGPDILLHVNVLRNFGQSSIADGAEV-ELVTHRTER 66
Query: 66 GKKDIEAINVTGP--NGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGF 123
G + +E +++T P + PV +E S ++ PA VK++D +GF
Sbjct: 67 GVQAVEVLSITPPARDDSPVL---SDFAEMDSDVLYSEPLVPAR------VKWFDKGKGF 117
Query: 124 GFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINV 176
GF ED+F+H V++ + L GE + + GK+ A+ V
Sbjct: 118 GFANVFGRDEDVFLH----VEVLRQSGLSELQPGEALGMRVIDGKRGRMAVEV 166
Score = 35.8 bits (81), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 104 FPAVHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFN 163
++ +RG+VK++D +GFGF+ + DI +H + + + E+V
Sbjct: 5 LSSLQQIRGLVKWFDPTKGFGFVVSDEGGPDILLHVNVLRNFGQSSIADGAEV-ELVTHR 63
Query: 164 IGVGKKDIEAINVTGP 179
G + +E +++T P
Sbjct: 64 TERGVQAVEVLSITPP 79
>gi|152997623|ref|YP_001342458.1| cold-shock DNA-binding domain-containing protein [Marinomonas sp.
MWYL1]
gi|150838547|gb|ABR72523.1| putative cold-shock DNA-binding domain protein [Marinomonas sp.
MWYL1]
Length = 69
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 5/68 (7%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VKF++ +GFGFIT+ D D+FVH S+I F++L G+ V+F + GKK
Sbjct: 5 VTGTVKFFNETKGFGFITQ-DQGPDVFVHFSAINTSG----FKTLAEGQKVEFQVAQGKK 59
Query: 69 DIEAINVT 76
EA NVT
Sbjct: 60 GPEAQNVT 67
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 5/68 (7%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VKF++ +GFGFIT+ D D+FVH S+I F++L G+ V+F + GKK
Sbjct: 5 VTGTVKFFNETKGFGFITQ-DQGPDVFVHFSAINTSG----FKTLAEGQKVEFQVAQGKK 59
Query: 170 DIEAINVT 177
EA NVT
Sbjct: 60 GPEAQNVT 67
>gi|297665898|ref|XP_002811262.1| PREDICTED: protein lin-28 homolog A [Pongo abelii]
gi|355557707|gb|EHH14487.1| hypothetical protein EGK_00420 [Macaca mulatta]
Length = 209
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 11/87 (12%)
Query: 112 GIVKFYDSKRGFGFIT-------RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 164
GI K+++ + GFGF++ LD D+FVH+S + F+SL GE V+F
Sbjct: 42 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEG----FRSLKEGEAVEFTF 97
Query: 165 GVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP G+ G+ + P
Sbjct: 98 KKSAKGLESIRVTGPGGVFCIGSERRP 124
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 11/78 (14%)
Query: 11 GIVKFYDSKRGFGFIT-------RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
GI K+++ + GFGF++ LD D+FVH+S + F+SL GE V+F
Sbjct: 42 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEG----FRSLKEGEAVEFTF 97
Query: 64 GVGKKDIEAINVTGPNGI 81
K +E+I VTGP G+
Sbjct: 98 KKSAKGLESIRVTGPGGV 115
>gi|119568818|gb|EAW48433.1| lin-28 homolog B (C. elegans), isoform CRA_a [Homo sapiens]
Length = 257
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 13/88 (14%)
Query: 112 GIVKFYDSKRGFGFITRLDNKE--------DIFVHKSSIVKMNPKKFFQSLGLGEIVDFN 163
G K+++ + GFGFI+ + N+E D+FVH+S + F+SL GE V+F
Sbjct: 39 GHCKWFNVRMGFGFISMI-NREGSPLDIPVDVFVHQSKLFMEG----FRSLKEGEPVEFT 93
Query: 164 IGVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP G P G+ + P
Sbjct: 94 FKKSSKGLESIRVTGPGGSPCLGSERRP 121
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 15/92 (16%)
Query: 5 EIHTVRGI--VKFYDSKRGFGFITRLDNKE--------DIFVHKSSIVKMNPKKFFQSLG 54
E +RG K+++ + GFGFI+ + N+E D+FVH+S + F+SL
Sbjct: 31 ESQVLRGTGHCKWFNVRMGFGFISMI-NREGSPLDIPVDVFVHQSKLFMEG----FRSLK 85
Query: 55 LGEIVDFNIGVGKKDIEAINVTGPNGIPVQGA 86
GE V+F K +E+I VTGP G P G+
Sbjct: 86 EGEPVEFTFKKSSKGLESIRVTGPGGSPCLGS 117
>gi|348560544|ref|XP_003466073.1| PREDICTED: protein lin-28 homolog B-like isoform 1 [Cavia
porcellus]
Length = 250
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 11/87 (12%)
Query: 112 GIVKFYDSKRGFGFIT-------RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 164
G K+++ + GFGFI+ LD D+FVH+S + F+SL GE V+F
Sbjct: 32 GHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEG----FRSLKEGEPVEFTF 87
Query: 165 GVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E++ VTGP G P G+ + P
Sbjct: 88 KKSSKGLESLRVTGPGGTPCLGSERRP 114
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 11/83 (13%)
Query: 11 GIVKFYDSKRGFGFIT-------RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
G K+++ + GFGFI+ LD D+FVH+S + F+SL GE V+F
Sbjct: 32 GHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEG----FRSLKEGEPVEFTF 87
Query: 64 GVGKKDIEAINVTGPNGIPVQGA 86
K +E++ VTGP G P G+
Sbjct: 88 KKSSKGLESLRVTGPGGTPCLGS 110
>gi|344287438|ref|XP_003415460.1| PREDICTED: protein lin-28 homolog A-like [Loxodonta africana]
Length = 205
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 11/87 (12%)
Query: 112 GIVKFYDSKRGFGFIT-------RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 164
GI K+++ + GFGF++ LD D+FVH+S + F+SL GE V+F
Sbjct: 38 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEG----FRSLKEGEAVEFTF 93
Query: 165 GVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP G+ G+ + P
Sbjct: 94 KKSAKGLESIRVTGPGGVFCIGSERRP 120
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 11/78 (14%)
Query: 11 GIVKFYDSKRGFGFIT-------RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
GI K+++ + GFGF++ LD D+FVH+S + F+SL GE V+F
Sbjct: 38 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEG----FRSLKEGEAVEFTF 93
Query: 64 GVGKKDIEAINVTGPNGI 81
K +E+I VTGP G+
Sbjct: 94 KKSAKGLESIRVTGPGGV 111
>gi|301755044|ref|XP_002913351.1| PREDICTED: protein lin-28 homolog A-like [Ailuropoda melanoleuca]
gi|281351598|gb|EFB27182.1| hypothetical protein PANDA_001150 [Ailuropoda melanoleuca]
Length = 206
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 11/87 (12%)
Query: 112 GIVKFYDSKRGFGFIT-------RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 164
GI K+++ + GFGF++ LD D+FVH+S + F+SL GE V+F
Sbjct: 38 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEG----FRSLKEGEAVEFTF 93
Query: 165 GVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP G+ G+ + P
Sbjct: 94 KKSAKGLESIRVTGPGGVFCIGSERRP 120
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 11/78 (14%)
Query: 11 GIVKFYDSKRGFGFIT-------RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
GI K+++ + GFGF++ LD D+FVH+S + F+SL GE V+F
Sbjct: 38 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEG----FRSLKEGEAVEFTF 93
Query: 64 GVGKKDIEAINVTGPNGI 81
K +E+I VTGP G+
Sbjct: 94 KKSAKGLESIRVTGPGGV 111
>gi|332245102|ref|XP_003271702.1| PREDICTED: protein lin-28 homolog A [Nomascus leucogenys]
Length = 209
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 11/87 (12%)
Query: 112 GIVKFYDSKRGFGFIT-------RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 164
GI K+++ + GFGF++ LD D+FVH+S + F+SL GE V+F
Sbjct: 42 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEG----FRSLKEGEAVEFTF 97
Query: 165 GVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP G+ G+ + P
Sbjct: 98 KKSAKGLESIRVTGPGGVFCIGSERRP 124
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 11/78 (14%)
Query: 11 GIVKFYDSKRGFGFIT-------RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
GI K+++ + GFGF++ LD D+FVH+S + F+SL GE V+F
Sbjct: 42 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEG----FRSLKEGEAVEFTF 97
Query: 64 GVGKKDIEAINVTGPNGI 81
K +E+I VTGP G+
Sbjct: 98 KKSAKGLESIRVTGPGGV 115
>gi|397476183|ref|XP_003809489.1| PREDICTED: protein lin-28 homolog A [Pan paniscus]
Length = 209
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 11/87 (12%)
Query: 112 GIVKFYDSKRGFGFIT-------RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 164
GI K+++ + GFGF++ LD D+FVH+S + F+SL GE V+F
Sbjct: 42 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEG----FRSLKEGEAVEFTF 97
Query: 165 GVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP G+ G+ + P
Sbjct: 98 KKSAKGLESIRVTGPGGVFCIGSERRP 124
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 11/78 (14%)
Query: 11 GIVKFYDSKRGFGFIT-------RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
GI K+++ + GFGF++ LD D+FVH+S + F+SL GE V+F
Sbjct: 42 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEG----FRSLKEGEAVEFTF 97
Query: 64 GVGKKDIEAINVTGPNGI 81
K +E+I VTGP G+
Sbjct: 98 KKSAKGLESIRVTGPGGV 115
>gi|354495321|ref|XP_003509779.1| PREDICTED: LOW QUALITY PROTEIN: protein lin-28 homolog A-like
[Cricetulus griseus]
Length = 202
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 11/87 (12%)
Query: 112 GIVKFYDSKRGFGFIT-------RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 164
GI K+++ + GFGF++ LD D+FVH+S + F+SL GE V+F
Sbjct: 35 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEG----FRSLKEGEAVEFTF 90
Query: 165 GVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP G+ G+ + P
Sbjct: 91 KKSAKGLESIRVTGPGGVFCIGSERRP 117
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 11/78 (14%)
Query: 11 GIVKFYDSKRGFGFIT-------RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
GI K+++ + GFGF++ LD D+FVH+S + F+SL GE V+F
Sbjct: 35 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEG----FRSLKEGEAVEFTF 90
Query: 64 GVGKKDIEAINVTGPNGI 81
K +E+I VTGP G+
Sbjct: 91 KKSAKGLESIRVTGPGGV 108
>gi|392550722|ref|ZP_10297859.1| cold shock protein [Pseudoalteromonas spongiae UST010723-006]
Length = 70
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 43/68 (63%), Gaps = 4/68 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G+VK++D +GFGFI++ D +D+FVH +I + F++L G+ V F + G+K
Sbjct: 5 VEGVVKWFDESKGFGFISQNDGGKDVFVHFRAI----QSEGFKTLAEGQAVSFEVEDGQK 60
Query: 69 DIEAINVT 76
++A NV
Sbjct: 61 GLQAANVV 68
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 43/68 (63%), Gaps = 4/68 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G+VK++D +GFGFI++ D +D+FVH +I + F++L G+ V F + G+K
Sbjct: 5 VEGVVKWFDESKGFGFISQNDGGKDVFVHFRAI----QSEGFKTLAEGQAVSFEVEDGQK 60
Query: 170 DIEAINVT 177
++A NV
Sbjct: 61 GLQAANVV 68
>gi|148270113|ref|YP_001244573.1| cold-shock DNA-binding domain-containing protein [Thermotoga
petrophila RKU-1]
gi|170288941|ref|YP_001739179.1| cold-shock DNA-binding domain-containing protein [Thermotoga sp.
RQ2]
gi|281412545|ref|YP_003346624.1| cold-shock DNA-binding domain protein [Thermotoga naphthophila
RKU-10]
gi|147735657|gb|ABQ46997.1| cold-shock DNA-binding protein family [Thermotoga petrophila
RKU-1]
gi|170176444|gb|ACB09496.1| cold-shock DNA-binding domain protein [Thermotoga sp. RQ2]
gi|281373648|gb|ADA67210.1| cold-shock DNA-binding domain protein [Thermotoga naphthophila
RKU-10]
Length = 66
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 46/67 (68%), Gaps = 5/67 (7%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+RG VK++D+K+G+GFIT+ D D+FVH S+I + F++L G++V+F I GKK
Sbjct: 1 MRGKVKWFDAKKGYGFITK-DEGGDVFVHWSAI----EMEGFKTLKEGQVVEFEIQEGKK 55
Query: 69 DIEAINV 75
+A +V
Sbjct: 56 GPQAAHV 62
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 46/67 (68%), Gaps = 5/67 (7%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+RG VK++D+K+G+GFIT+ D D+FVH S+I + F++L G++V+F I GKK
Sbjct: 1 MRGKVKWFDAKKGYGFITK-DEGGDVFVHWSAI----EMEGFKTLKEGQVVEFEIQEGKK 55
Query: 170 DIEAINV 176
+A +V
Sbjct: 56 GPQAAHV 62
>gi|355745051|gb|EHH49676.1| hypothetical protein EGM_00377 [Macaca fascicularis]
Length = 209
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 11/87 (12%)
Query: 112 GIVKFYDSKRGFGFIT-------RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 164
GI K+++ + GFGF++ LD D+FVH+S + F+SL GE V+F
Sbjct: 42 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEG----FRSLKEGEAVEFTF 97
Query: 165 GVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP G+ G+ + P
Sbjct: 98 KKSAKGLESIRVTGPGGVFCIGSERRP 124
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 11/78 (14%)
Query: 11 GIVKFYDSKRGFGFIT-------RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
GI K+++ + GFGF++ LD D+FVH+S + F+SL GE V+F
Sbjct: 42 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEG----FRSLKEGEAVEFTF 97
Query: 64 GVGKKDIEAINVTGPNGI 81
K +E+I VTGP G+
Sbjct: 98 KKSAKGLESIRVTGPGGV 115
>gi|226322941|ref|ZP_03798459.1| hypothetical protein COPCOM_00713 [Coprococcus comes ATCC 27758]
gi|225208727|gb|EEG91081.1| cold-shock DNA-binding domain protein [Coprococcus comes ATCC
27758]
Length = 67
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 44/67 (65%), Gaps = 4/67 (5%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 69
+G VK++++++G+GFIT ED+FVH S I + ++SL G+ V F+I G +
Sbjct: 3 KGTVKWFNAQKGYGFITNESTGEDVFVHFSGI----AGEGYKSLEEGQNVTFDITEGNRG 58
Query: 70 IEAINVT 76
++A+NVT
Sbjct: 59 LQAVNVT 65
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 44/67 (65%), Gaps = 4/67 (5%)
Query: 111 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 170
+G VK++++++G+GFIT ED+FVH S I + ++SL G+ V F+I G +
Sbjct: 3 KGTVKWFNAQKGYGFITNESTGEDVFVHFSGI----AGEGYKSLEEGQNVTFDITEGNRG 58
Query: 171 IEAINVT 177
++A+NVT
Sbjct: 59 LQAVNVT 65
>gi|347758992|ref|YP_004866554.1| Cold-shock' DNA-binding domain-containing protein [Micavibrio
aeruginosavorus ARL-13]
gi|347591510|gb|AEP10552.1| 'Cold-shock' DNA-binding domain protein [Micavibrio aeruginosavorus
ARL-13]
Length = 190
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 67/148 (45%), Gaps = 16/148 (10%)
Query: 6 IHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGV 65
+ VR +K+++ +GFGF+ D F+H +++ + + LG+ D +
Sbjct: 17 LPAVRAKLKWFNGPKGFGFVVPDGEDIDAFLHVTTLQRAG------ATALGDGADLMCRI 70
Query: 66 GKKDIEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVH---------TVRGIVKF 116
K+ VT I GA ++ S S P++ T+ G VK+
Sbjct: 71 -KRGPRGAMVTEVTEILDLGALPETAMPTSAPRMPQSGGPSISDHAGPEKGVTMDGTVKW 129
Query: 117 YDSKRGFGFITRLDNKEDIFVHKSSIVK 144
Y ++GFGFI D +D+F+HK+ + +
Sbjct: 130 YKPEKGFGFIIPEDQAKDVFIHKACLER 157
>gi|182678504|ref|YP_001832650.1| cold-shock DNA-binding domain-containing protein [Beijerinckia
indica subsp. indica ATCC 9039]
gi|182634387|gb|ACB95161.1| cold-shock DNA-binding domain protein [Beijerinckia indica subsp.
indica ATCC 9039]
Length = 224
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 77/174 (44%), Gaps = 16/174 (9%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V IVK++ +GFGF+ + D F+H ++ ++S+ G + N+G G K
Sbjct: 60 VDAIVKWFKGDKGFGFVELSNGAGDAFLHIGALQAAG----YESVPPGAKLKVNVGNGMK 115
Query: 69 DIEAINVTGPNGIPVQGAPKSSSETVS-----GTYRNDSFFPAVHTVRGIVKFYDSKRGF 123
+ V + GA + + + S R + +V G VK++D +GF
Sbjct: 116 GAQVTRVLE---VDTAGAAERAPQRPSFGDSPRPPRRAPDPSSAVSVTGTVKWFDDNKGF 172
Query: 124 GFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVT 177
GF+ D +D+FVH S + Q L G+ V + K EA++++
Sbjct: 173 GFVQSNDGGKDVFVHISILGSSG----VQHLAEGQAVTMRVVDTPKGREALSIS 222
Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 8 TVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGK 67
+V G VK++D +GFGF+ D +D+FVH S + Q L G+ V +
Sbjct: 158 SVTGTVKWFDDNKGFGFVQSNDGGKDVFVHISILGSSG----VQHLAEGQAVTMRVVDTP 213
Query: 68 KDIEAINVT 76
K EA++++
Sbjct: 214 KGREALSIS 222
>gi|414173346|ref|ZP_11428109.1| hypothetical protein HMPREF9695_01755 [Afipia broomeae ATCC 49717]
gi|410891998|gb|EKS39794.1| hypothetical protein HMPREF9695_01755 [Afipia broomeae ATCC 49717]
Length = 219
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 77/177 (43%), Gaps = 17/177 (9%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLG-EIVDFNIGVGK 67
+ G++K++D+ +G+GFI + D+ +H + + + + ++ L E V G
Sbjct: 53 ISGVIKWFDASKGYGFIVPDNGWPDVLLHVTILRRDGYQTAYEGARLVVECVQRQKGY-- 110
Query: 68 KDIEAINVTGPNGI-PVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFI 126
+ +++ I P Q P + +V+ P R VK+++ RGFGF+
Sbjct: 111 QAFRIVSMDESTAIHPAQMLPARTHVSVT---------PTSGLERAQVKWFNRLRGFGFL 161
Query: 127 TRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIP 183
T + DIFVH ++ + L G+ V G G K + A + G P
Sbjct: 162 TCGEGTPDIFVHMETLRRYG----MTELRPGQYVLVRFGPGSKGMMAAEIQPETGAP 214
>gi|398799385|ref|ZP_10558676.1| cold shock protein [Pantoea sp. GM01]
gi|398098801|gb|EJL89081.1| cold shock protein [Pantoea sp. GM01]
Length = 69
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 4/68 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
++G VK+++ +GFGFIT D +D+FVH S+I F++L G+ V+F I G+K
Sbjct: 4 IKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNG----FKTLAEGQNVEFEIQDGQK 59
Query: 69 DIEAINVT 76
A+NVT
Sbjct: 60 GPAAVNVT 67
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 4/68 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
++G VK+++ +GFGFIT D +D+FVH S+I F++L G+ V+F I G+K
Sbjct: 4 IKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNG----FKTLAEGQNVEFEIQDGQK 59
Query: 170 DIEAINVT 177
A+NVT
Sbjct: 60 GPAAVNVT 67
>gi|326202744|ref|ZP_08192612.1| cold-shock DNA-binding domain protein [Clostridium papyrosolvens
DSM 2782]
gi|325987328|gb|EGD48156.1| cold-shock DNA-binding domain protein [Clostridium papyrosolvens
DSM 2782]
Length = 66
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 46/65 (70%), Gaps = 5/65 (7%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 70
GIVK++++++GFGFIT +D ED+FVH SSI ++SL G+ V+F+I G++ +
Sbjct: 4 GIVKWFNAEKGFGFIT-VDGGEDVFVHFSSI----QSSGYKSLDEGQRVNFDIEKGQRGL 58
Query: 71 EAINV 75
+A NV
Sbjct: 59 QATNV 63
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 46/65 (70%), Gaps = 5/65 (7%)
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 171
GIVK++++++GFGFIT +D ED+FVH SSI ++SL G+ V+F+I G++ +
Sbjct: 4 GIVKWFNAEKGFGFIT-VDGGEDVFVHFSSI----QSSGYKSLDEGQRVNFDIEKGQRGL 58
Query: 172 EAINV 176
+A NV
Sbjct: 59 QATNV 63
>gi|22003878|ref|NP_665832.1| protein lin-28 homolog A [Mus musculus]
gi|81914711|sp|Q8K3Y3.1|LN28A_MOUSE RecName: Full=Protein lin-28 homolog A; Short=Lin-28A; AltName:
Full=Testis-expressed protein 17
gi|21842298|gb|AAM77749.1|AF521097_1 RNA-binding protein LIN-28 [Mus musculus]
gi|148698092|gb|EDL30039.1| lin-28 homolog (C. elegans) [Mus musculus]
Length = 209
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 11/87 (12%)
Query: 112 GIVKFYDSKRGFGFIT-------RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 164
GI K+++ + GFGF++ LD D+FVH+S + F+SL GE V+F
Sbjct: 42 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEG----FRSLKEGEAVEFTF 97
Query: 165 GVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP G+ G+ + P
Sbjct: 98 KKSAKGLESIRVTGPGGVFCIGSERRP 124
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 11/78 (14%)
Query: 11 GIVKFYDSKRGFGFIT-------RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
GI K+++ + GFGF++ LD D+FVH+S + F+SL GE V+F
Sbjct: 42 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEG----FRSLKEGEAVEFTF 97
Query: 64 GVGKKDIEAINVTGPNGI 81
K +E+I VTGP G+
Sbjct: 98 KKSAKGLESIRVTGPGGV 115
>gi|37526673|ref|NP_930017.1| cold shock protein [Photorhabdus luminescens subsp. laumondii
TTO1]
gi|36786105|emb|CAE15157.1| cold shock protein [Photorhabdus luminescens subsp. laumondii
TTO1]
Length = 69
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 4/70 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+ G VK+++ +GFGFIT D +D+FVH S+I + F++L G+ V+F I G+K
Sbjct: 4 ITGTVKWFNESKGFGFITPADGSKDVFVHFSAI----QSEGFKTLAEGQKVEFEIQDGQK 59
Query: 69 DIEAINVTGP 78
A NVT
Sbjct: 60 GPSAANVTAA 69
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 4/70 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+ G VK+++ +GFGFIT D +D+FVH S+I + F++L G+ V+F I G+K
Sbjct: 4 ITGTVKWFNESKGFGFITPADGSKDVFVHFSAI----QSEGFKTLAEGQKVEFEIQDGQK 59
Query: 170 DIEAINVTGP 179
A NVT
Sbjct: 60 GPSAANVTAA 69
>gi|291399525|ref|XP_002716148.1| PREDICTED: lin-28 homolog [Oryctolagus cuniculus]
gi|291409216|ref|XP_002720890.1| PREDICTED: lin-28 homolog [Oryctolagus cuniculus]
Length = 209
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 11/87 (12%)
Query: 112 GIVKFYDSKRGFGFIT-------RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 164
GI K+++ + GFGF++ LD D+FVH+S + F+SL GE V+F
Sbjct: 42 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEG----FRSLKEGEAVEFTF 97
Query: 165 GVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP G+ G+ + P
Sbjct: 98 KKSAKGLESIRVTGPGGVFCIGSERRP 124
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 11/78 (14%)
Query: 11 GIVKFYDSKRGFGFIT-------RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
GI K+++ + GFGF++ LD D+FVH+S + F+SL GE V+F
Sbjct: 42 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEG----FRSLKEGEAVEFTF 97
Query: 64 GVGKKDIEAINVTGPNGI 81
K +E+I VTGP G+
Sbjct: 98 KKSAKGLESIRVTGPGGV 115
>gi|114330329|ref|YP_746551.1| cold-shock DNA-binding domain-containing protein [Nitrosomonas
eutropha C91]
gi|114307343|gb|ABI58586.1| cold shock protein E (CspE) [Nitrosomonas eutropha C91]
Length = 67
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 43/68 (63%), Gaps = 4/68 (5%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 70
GIVK+++ +GFGFIT D ED+F H S+I MN F++L G+ V F++ G+K
Sbjct: 4 GIVKWFNDAKGFGFITPDDGSEDLFAHFSAI-SMNG---FKTLREGQRVSFDVTQGQKGK 59
Query: 71 EAINVTGP 78
+A N+ P
Sbjct: 60 QASNIQAP 67
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 43/68 (63%), Gaps = 4/68 (5%)
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 171
GIVK+++ +GFGFIT D ED+F H S+I MN F++L G+ V F++ G+K
Sbjct: 4 GIVKWFNDAKGFGFITPDDGSEDLFAHFSAI-SMNG---FKTLREGQRVSFDVTQGQKGK 59
Query: 172 EAINVTGP 179
+A N+ P
Sbjct: 60 QASNIQAP 67
>gi|433459486|ref|ZP_20417282.1| cold shock protein [Arthrobacter crystallopoietes BAB-32]
gi|432190324|gb|ELK47365.1| cold shock protein [Arthrobacter crystallopoietes BAB-32]
Length = 68
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 48/67 (71%), Gaps = 4/67 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+G VK++++++G+GFIT +N+ D+FVH S+I +M+ ++SL G+ V+F IG G+K
Sbjct: 2 AQGTVKWFNAEKGYGFITVDENESDVFVHWSAI-RMDG---YRSLEEGQRVEFEIGEGQK 57
Query: 69 DIEAINV 75
+A +V
Sbjct: 58 GPQAEDV 64
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 48/67 (71%), Gaps = 4/67 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+G VK++++++G+GFIT +N+ D+FVH S+I +M+ ++SL G+ V+F IG G+K
Sbjct: 2 AQGTVKWFNAEKGYGFITVDENESDVFVHWSAI-RMDG---YRSLEEGQRVEFEIGEGQK 57
Query: 170 DIEAINV 176
+A +V
Sbjct: 58 GPQAEDV 64
>gi|46329818|gb|AAH68304.1| Lin-28 homolog (C. elegans) [Mus musculus]
Length = 209
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 11/87 (12%)
Query: 112 GIVKFYDSKRGFGFIT-------RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 164
GI K+++ + GFGF++ LD D+FVH+S + F+SL GE V+F
Sbjct: 42 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEG----FRSLKEGEAVEFTF 97
Query: 165 GVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP G+ G+ + P
Sbjct: 98 KKSAKGLESIRVTGPGGVFCIGSERRP 124
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 11/78 (14%)
Query: 11 GIVKFYDSKRGFGFIT-------RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
GI K+++ + GFGF++ LD D+FVH+S + F+SL GE V+F
Sbjct: 42 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEG----FRSLKEGEAVEFTF 97
Query: 64 GVGKKDIEAINVTGPNGI 81
K +E+I VTGP G+
Sbjct: 98 KKSAKGLESIRVTGPGGV 115
>gi|393758709|ref|ZP_10347529.1| cold-shock protein [Alcaligenes faecalis subsp. faecalis NCIB 8687]
gi|424776028|ref|ZP_18203014.1| cold-shock protein [Alcaligenes sp. HPC1271]
gi|393163145|gb|EJC63199.1| cold-shock protein [Alcaligenes faecalis subsp. faecalis NCIB 8687]
gi|422888689|gb|EKU31074.1| cold-shock protein [Alcaligenes sp. HPC1271]
Length = 81
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 11/91 (12%)
Query: 89 SSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPK 148
S + T +GT N + G VK+++ +GFGFIT + ED+F H SSI +MN
Sbjct: 2 SETTTTAGTGDN-------QKLSGTVKWFNDAKGFGFITPDNGGEDLFAHFSSI-QMNG- 52
Query: 149 KFFQSLGLGEIVDFNIGVGKKDIEAINVTGP 179
F++L G+ V + + G K +A+N+T P
Sbjct: 53 --FKTLKEGQKVLYEVAQGPKGKQALNITSP 81
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 44/70 (62%), Gaps = 4/70 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+ G VK+++ +GFGFIT + ED+F H SSI +MN F++L G+ V + + G K
Sbjct: 16 LSGTVKWFNDAKGFGFITPDNGGEDLFAHFSSI-QMNG---FKTLKEGQKVLYEVAQGPK 71
Query: 69 DIEAINVTGP 78
+A+N+T P
Sbjct: 72 GKQALNITSP 81
>gi|357380709|pdb|3TRZ|A Chain A, Mouse Lin28a In Complex With Let-7d Microrna Pre-Element
gi|357380710|pdb|3TRZ|B Chain B, Mouse Lin28a In Complex With Let-7d Microrna Pre-Element
gi|357380711|pdb|3TRZ|C Chain C, Mouse Lin28a In Complex With Let-7d Microrna Pre-Element
gi|357380712|pdb|3TRZ|D Chain D, Mouse Lin28a In Complex With Let-7d Microrna Pre-Element
gi|357380713|pdb|3TRZ|E Chain E, Mouse Lin28a In Complex With Let-7d Microrna Pre-Element
gi|357380714|pdb|3TRZ|F Chain F, Mouse Lin28a In Complex With Let-7d Microrna Pre-Element
gi|357380725|pdb|3TS2|A Chain A, Mouse Lin28a In Complex With Let-7g Microrna Pre-Element
gi|357380726|pdb|3TS2|B Chain B, Mouse Lin28a In Complex With Let-7g Microrna Pre-Element
Length = 148
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 11/87 (12%)
Query: 112 GIVKFYDSKRGFGFIT-------RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 164
GI K+++ + GFGF++ LD D+FVH+S + F+SL GE V+F
Sbjct: 12 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEG----FRSLKEGEAVEFTF 67
Query: 165 GVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP G+ G+ + P
Sbjct: 68 KKSAKGLESIRVTGPGGVFCIGSERRP 94
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 11/78 (14%)
Query: 11 GIVKFYDSKRGFGFIT-------RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
GI K+++ + GFGF++ LD D+FVH+S + F+SL GE V+F
Sbjct: 12 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEG----FRSLKEGEAVEFTF 67
Query: 64 GVGKKDIEAINVTGPNGI 81
K +E+I VTGP G+
Sbjct: 68 KKSAKGLESIRVTGPGGV 85
>gi|351697858|gb|EHB00777.1| Lin-28-like protein A [Heterocephalus glaber]
Length = 209
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 11/87 (12%)
Query: 112 GIVKFYDSKRGFGFIT-------RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 164
GI K+++ + GFGF++ LD D+FVH+S + F+SL GE V+F
Sbjct: 42 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEG----FRSLKEGEAVEFTF 97
Query: 165 GVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP G+ G+ + P
Sbjct: 98 KKSAKGLESIRVTGPGGVFCIGSERRP 124
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 11/78 (14%)
Query: 11 GIVKFYDSKRGFGFIT-------RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
GI K+++ + GFGF++ LD D+FVH+S + F+SL GE V+F
Sbjct: 42 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEG----FRSLKEGEAVEFTF 97
Query: 64 GVGKKDIEAINVTGPNGI 81
K +E+I VTGP G+
Sbjct: 98 KKSAKGLESIRVTGPGGV 115
>gi|212710131|ref|ZP_03318259.1| hypothetical protein PROVALCAL_01185 [Providencia alcalifaciens DSM
30120]
gi|212687338|gb|EEB46866.1| hypothetical protein PROVALCAL_01185 [Providencia alcalifaciens DSM
30120]
Length = 81
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 96 GTYRNDSFFPAVHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLG 155
T +N F +T+ G+VK+++ +GFGFI+ D +D+FVH S+I F++L
Sbjct: 2 ATIKNSKEFNMSNTMTGLVKWFNESKGFGFISPADGSKDVFVHFSAI----QSDSFKTLN 57
Query: 156 LGEIVDFNIGVGKKDIEAINV 176
G+ V F++ G K A NV
Sbjct: 58 EGQKVSFSVENGAKGPAAANV 78
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 7 HTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVG 66
+T+ G+VK+++ +GFGFI+ D +D+FVH S+I F++L G+ V F++ G
Sbjct: 14 NTMTGLVKWFNESKGFGFISPADGSKDVFVHFSAI----QSDSFKTLNEGQKVSFSVENG 69
Query: 67 KKDIEAINV 75
K A NV
Sbjct: 70 AKGPAAANV 78
>gi|254461278|ref|ZP_05074694.1| cold shock DNA-binding domain protein [Rhodobacterales bacterium
HTCC2083]
gi|206677867|gb|EDZ42354.1| cold shock DNA-binding domain protein [Rhodobacteraceae bacterium
HTCC2083]
Length = 173
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 80/172 (46%), Gaps = 14/172 (8%)
Query: 8 TVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQ-SLGLGEIVDFNIGVG 66
TVRG VK++D +GFGF+ + DI +H + + + F Q S+ G +++
Sbjct: 9 TVRGAVKWFDPAKGFGFVVAEEGGADILLHANVL-----RNFGQNSVAEGAVIEILSQET 63
Query: 67 KKDIEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFI 126
+ ++A+ V + P++ + + + + + R VK++D +GFGF
Sbjct: 64 DRGLQAVEVLSID--PLRHTDRPALPDLEDFDLDQLDQVVLQPAR--VKWFDKGKGFGFA 119
Query: 127 TRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTG 178
+ DIFVH V++ + L GE + + GK+ + AI V+
Sbjct: 120 NVFGSDADIFVH----VEVLRRSGLADLAPGEALALRVIDGKRGLMAIEVSA 167
>gi|222054634|ref|YP_002536996.1| cold-shock protein [Geobacter daltonii FRC-32]
gi|221563923|gb|ACM19895.1| cold-shock DNA-binding domain protein [Geobacter daltonii FRC-32]
Length = 66
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 43/67 (64%), Gaps = 5/67 (7%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+G VK+++ +GFGFI + DN ED+FVH S+IV F+SL GE V F++ G K
Sbjct: 2 AQGKVKWFNDAKGFGFIEQ-DNGEDVFVHFSAIVGEG----FKSLAEGEAVSFDVTNGPK 56
Query: 69 DIEAINV 75
++A NV
Sbjct: 57 GLQAANV 63
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 43/67 (64%), Gaps = 5/67 (7%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+G VK+++ +GFGFI + DN ED+FVH S+IV F+SL GE V F++ G K
Sbjct: 2 AQGKVKWFNDAKGFGFIEQ-DNGEDVFVHFSAIVGEG----FKSLAEGEAVSFDVTNGPK 56
Query: 170 DIEAINV 176
++A NV
Sbjct: 57 GLQAANV 63
>gi|345328767|ref|XP_001506004.2| PREDICTED: protein lin-28 homolog B-like [Ornithorhynchus anatinus]
Length = 389
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 11/87 (12%)
Query: 112 GIVKFYDSKRGFGFIT-------RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 164
G K+++ + GFGFI+ LD D+FVH+S + F+SL GE ++F
Sbjct: 167 GHCKWFNVRMGFGFISMISREGSPLDPAVDVFVHQSKLHMEG----FRSLKEGEPLEFTF 222
Query: 165 GVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP G P G+ + P
Sbjct: 223 KKSSKGLESIRVTGPGGSPCLGSERRP 249
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 11/83 (13%)
Query: 11 GIVKFYDSKRGFGFIT-------RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
G K+++ + GFGFI+ LD D+FVH+S + F+SL GE ++F
Sbjct: 167 GHCKWFNVRMGFGFISMISREGSPLDPAVDVFVHQSKLHMEG----FRSLKEGEPLEFTF 222
Query: 64 GVGKKDIEAINVTGPNGIPVQGA 86
K +E+I VTGP G P G+
Sbjct: 223 KKSSKGLESIRVTGPGGSPCLGS 245
>gi|308270407|emb|CBX27019.1| Major cold shock protein [uncultured Desulfobacterium sp.]
Length = 66
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 44/68 (64%), Gaps = 5/68 (7%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
GIVK++ +K+G+GFI + +N ED+FVH S+I F++L GE V F+I G+K
Sbjct: 2 ANGIVKWFSNKKGYGFIEQ-ENGEDVFVHHSAINGAG----FKTLSEGEKVTFDIEQGEK 56
Query: 69 DIEAINVT 76
A+NVT
Sbjct: 57 GPAAVNVT 64
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 44/68 (64%), Gaps = 5/68 (7%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
GIVK++ +K+G+GFI + +N ED+FVH S+I F++L GE V F+I G+K
Sbjct: 2 ANGIVKWFSNKKGYGFIEQ-ENGEDVFVHHSAINGAG----FKTLSEGEKVTFDIEQGEK 56
Query: 170 DIEAINVT 177
A+NVT
Sbjct: 57 GPAAVNVT 64
>gi|198282878|ref|YP_002219199.1| cold-shock DNA-binding domain-containing protein
[Acidithiobacillus ferrooxidans ATCC 53993]
gi|218666777|ref|YP_002425079.1| cold-shock protein [Acidithiobacillus ferrooxidans ATCC 23270]
gi|344199146|ref|YP_004783472.1| cold-shock DNA-binding domain-containing protein
[Acidithiobacillus ferrivorans SS3]
gi|415979230|ref|ZP_11559114.1| cold-shock protein [Acidithiobacillus sp. GGI-221]
gi|198247399|gb|ACH82992.1| cold-shock DNA-binding domain protein [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|218518990|gb|ACK79576.1| cold-shock protein [Acidithiobacillus ferrooxidans ATCC 23270]
gi|339834238|gb|EGQ62015.1| cold-shock protein [Acidithiobacillus sp. GGI-221]
gi|343774590|gb|AEM47146.1| cold-shock DNA-binding domain protein [Acidithiobacillus
ferrivorans SS3]
Length = 67
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 40/65 (61%), Gaps = 4/65 (6%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 70
G VK+++ +GFGFIT D KED+FVH S+I F++L GE V+F + G K +
Sbjct: 4 GTVKWFNDSKGFGFITPEDGKEDVFVHHSAIEGTG----FKTLAEGERVNFEVTRGPKGL 59
Query: 71 EAINV 75
+A V
Sbjct: 60 QAEKV 64
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 40/65 (61%), Gaps = 4/65 (6%)
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 171
G VK+++ +GFGFIT D KED+FVH S+I F++L GE V+F + G K +
Sbjct: 4 GTVKWFNDSKGFGFITPEDGKEDVFVHHSAIEGTG----FKTLAEGERVNFEVTRGPKGL 59
Query: 172 EAINV 176
+A V
Sbjct: 60 QAEKV 64
>gi|126735666|ref|ZP_01751411.1| cold shock DNA-binding domain protein [Roseobacter sp. CCS2]
gi|126714853|gb|EBA11719.1| cold shock DNA-binding domain protein [Roseobacter sp. CCS2]
Length = 190
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 85/193 (44%), Gaps = 40/193 (20%)
Query: 3 KFEIH------TVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLG 56
K E H V G VK++D +GFGF+ + DI +H + ++ G G
Sbjct: 15 KMETHDAGTQRQVLGQVKWFDPTKGFGFVVSEEGGPDILLHAN---------VLRNYGQG 65
Query: 57 EIVD---FNIGV-----GKKDIEAINVTGPN---GIPVQGAPKSSSETVSGTYRNDSFFP 105
+VD +I V G + E +++T P +P++ + S E ++ + P
Sbjct: 66 SVVDGSAISIMVQDTQRGLQATEVLSITPPETEESLPLRDMVEFSPEDIA----SKPIEP 121
Query: 106 AVHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIG 165
A VK++D +GFGF N ED+FVH V++ + L GE + +
Sbjct: 122 AR------VKWFDKAKGFGFANVFGNNEDVFVH----VEVLRRSGLSDLQSGEAIGIRMV 171
Query: 166 VGKKDIEAINVTG 178
G++ AI V G
Sbjct: 172 DGERGRMAIEVIG 184
>gi|238919617|ref|YP_002933132.1| cold-shock DNA-binding domain protein [Edwardsiella ictaluri
93-146]
gi|269138905|ref|YP_003295606.1| cold shock protein [Edwardsiella tarda EIB202]
gi|294636002|ref|ZP_06714441.1| conserved domain protein [Edwardsiella tarda ATCC 23685]
gi|317492183|ref|ZP_07950613.1| cold-shock' DNA-binding domain-containing protein
[Enterobacteriaceae bacterium 9_2_54FAA]
gi|365837352|ref|ZP_09378721.1| cold shock-like protein CspE [Hafnia alvei ATCC 51873]
gi|387867578|ref|YP_005699047.1| Cold shock protein CspC [Edwardsiella tarda FL6-60]
gi|451964682|ref|ZP_21917945.1| cold shock-like protein CspC [Edwardsiella tarda NBRC 105688]
gi|238869186|gb|ACR68897.1| cold-shock DNA-binding domain protein [Edwardsiella ictaluri
93-146]
gi|267984566|gb|ACY84395.1| cold shock protein [Edwardsiella tarda EIB202]
gi|291090679|gb|EFE23240.1| conserved domain protein [Edwardsiella tarda ATCC 23685]
gi|304558891|gb|ADM41555.1| Cold shock protein CspC [Edwardsiella tarda FL6-60]
gi|316919888|gb|EFV41217.1| cold-shock' DNA-binding domain-containing protein
[Enterobacteriaceae bacterium 9_2_54FAA]
gi|364562084|gb|EHM39954.1| cold shock-like protein CspE [Hafnia alvei ATCC 51873]
gi|451316574|dbj|GAC63307.1| cold shock-like protein CspC [Edwardsiella tarda NBRC 105688]
Length = 69
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 4/68 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
++G VK+++ +GFGFIT D +D+FVH S+I F++L G+ V+F I G+K
Sbjct: 4 IKGQVKWFNEAKGFGFITPADGSKDVFVHFSAIQGNG----FKTLAEGQHVEFEIQDGQK 59
Query: 69 DIEAINVT 76
A+NVT
Sbjct: 60 GPSAVNVT 67
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 4/68 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
++G VK+++ +GFGFIT D +D+FVH S+I F++L G+ V+F I G+K
Sbjct: 4 IKGQVKWFNEAKGFGFITPADGSKDVFVHFSAIQGNG----FKTLAEGQHVEFEIQDGQK 59
Query: 170 DIEAINVT 177
A+NVT
Sbjct: 60 GPSAVNVT 67
>gi|238755702|ref|ZP_04617036.1| Cold shock-like protein cspI [Yersinia ruckeri ATCC 29473]
gi|238706069|gb|EEP98452.1| Cold shock-like protein cspI [Yersinia ruckeri ATCC 29473]
Length = 66
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 45/67 (67%), Gaps = 4/67 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+ G+VK++D+ +GFGFI+ D +D+FVH S+I + F++L G+ V+F+I G+K
Sbjct: 1 MTGLVKWFDAGKGFGFISPADGSKDVFVHFSAIQSSD----FKTLDEGQNVEFSIEQGQK 56
Query: 69 DIEAINV 75
A+NV
Sbjct: 57 GPSAVNV 63
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 45/67 (67%), Gaps = 4/67 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+ G+VK++D+ +GFGFI+ D +D+FVH S+I + F++L G+ V+F+I G+K
Sbjct: 1 MTGLVKWFDAGKGFGFISPADGSKDVFVHFSAIQSSD----FKTLDEGQNVEFSIEQGQK 56
Query: 170 DIEAINV 176
A+NV
Sbjct: 57 GPSAVNV 63
>gi|357380721|pdb|3TS0|A Chain A, Mouse Lin28a In Complex With Let-7f-1 Microrna Pre-Element
gi|357380722|pdb|3TS0|B Chain B, Mouse Lin28a In Complex With Let-7f-1 Microrna Pre-Element
Length = 146
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 11/87 (12%)
Query: 112 GIVKFYDSKRGFGFIT-------RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 164
GI K+++ + GFGF++ LD D+FVH+S + F+SL GE V+F
Sbjct: 10 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEG----FRSLKEGEAVEFTF 65
Query: 165 GVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP G+ G+ + P
Sbjct: 66 KKSAKGLESIRVTGPGGVFCIGSERRP 92
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 11/78 (14%)
Query: 11 GIVKFYDSKRGFGFIT-------RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
GI K+++ + GFGF++ LD D+FVH+S + F+SL GE V+F
Sbjct: 10 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEG----FRSLKEGEAVEFTF 65
Query: 64 GVGKKDIEAINVTGPNGI 81
K +E+I VTGP G+
Sbjct: 66 KKSAKGLESIRVTGPGGV 83
>gi|320109064|ref|YP_004184654.1| cold-shock DNA-binding domain-containing protein [Terriglobus
saanensis SP1PR4]
gi|319927585|gb|ADV84660.1| cold-shock DNA-binding domain protein [Terriglobus saanensis
SP1PR4]
Length = 67
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 44/66 (66%), Gaps = 5/66 (7%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 69
+G VK+++ +GFGF++R DN ED+FVH ++I + F+SL G+ V+FN+ G K
Sbjct: 3 QGTVKWFNDAKGFGFLSR-DNGEDVFVHHTAI----QAQGFRSLQEGQRVEFNVVKGPKG 57
Query: 70 IEAINV 75
+A NV
Sbjct: 58 WQAENV 63
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 44/66 (66%), Gaps = 5/66 (7%)
Query: 111 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 170
+G VK+++ +GFGF++R DN ED+FVH ++I + F+SL G+ V+FN+ G K
Sbjct: 3 QGTVKWFNDAKGFGFLSR-DNGEDVFVHHTAI----QAQGFRSLQEGQRVEFNVVKGPKG 57
Query: 171 IEAINV 176
+A NV
Sbjct: 58 WQAENV 63
>gi|392378485|ref|YP_004985645.1| putative cold shock protein [Azospirillum brasilense Sp245]
gi|356879967|emb|CCD00906.1| putative cold shock protein [Azospirillum brasilense Sp245]
Length = 192
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 77/178 (43%), Gaps = 18/178 (10%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+R VK++++ +GFGF+T D D F+H S++++ SL G + ++ G K
Sbjct: 20 IRATVKWFNATKGFGFVTPEDGSPDAFLH-STVLQFC---GHDSLPEGATITCDLSRGPK 75
Query: 69 DIEAINV-------TGPNGIPVQGAPKSSSETVSGTYRNDSFFPAV---HTVRGIVKFYD 118
+ + + P AP+S S + A TV G VK+++
Sbjct: 76 GPQVATIHDVDTSTASESPRPAARAPRSDSYGGGYGGGSSYGGGAGGAEETVDGTVKWFN 135
Query: 119 SKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINV 176
+GFGFI +DIFVH ++ + L GE V + G K EA V
Sbjct: 136 VSKGFGFIAPSTGGKDIFVH----IRALERSGLDVLADGEQVRVTVRQGVKGPEAQRV 189
Score = 35.8 bits (81), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 7 HTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVG 66
TV G VK+++ +GFGFI +DIFVH ++ + L GE V + G
Sbjct: 125 ETVDGTVKWFNVSKGFGFIAPSTGGKDIFVH----IRALERSGLDVLADGEQVRVTVRQG 180
Query: 67 KKDIEAINV 75
K EA V
Sbjct: 181 VKGPEAQRV 189
>gi|407715861|ref|YP_006837141.1| cold shock-like protein CspC2 [Cycloclasticus sp. P1]
gi|407256197|gb|AFT66638.1| Cold shock-like protein CspC2 [Cycloclasticus sp. P1]
Length = 66
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 42/66 (63%), Gaps = 4/66 (6%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 70
G VK+++ +GFGFIT D +D+FVH S+I F++L G+ V+F++ G K
Sbjct: 4 GTVKWFNESKGFGFITPEDGSKDVFVHFSAIASEG----FRTLNEGQQVNFDVENGPKGP 59
Query: 71 EAINVT 76
+A+NVT
Sbjct: 60 QAVNVT 65
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 42/66 (63%), Gaps = 4/66 (6%)
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 171
G VK+++ +GFGFIT D +D+FVH S+I F++L G+ V+F++ G K
Sbjct: 4 GTVKWFNESKGFGFITPEDGSKDVFVHFSAIASEG----FRTLNEGQQVNFDVENGPKGP 59
Query: 172 EAINVT 177
+A+NVT
Sbjct: 60 QAVNVT 65
>gi|45441309|ref|NP_992848.1| cold shock-like protein CspC [Yersinia pestis biovar Microtus
str. 91001]
gi|51595960|ref|YP_070151.1| cold shock-like protein CspC [Yersinia pseudotuberculosis IP
32953]
gi|108807116|ref|YP_651032.1| cold shock-like protein CspC [Yersinia pestis Antiqua]
gi|108812537|ref|YP_648304.1| cold shock-like protein CspC [Yersinia pestis Nepal516]
gi|123442059|ref|YP_001006042.1| cold shock-like protein CspC [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|145598663|ref|YP_001162739.1| cold shock-like protein CspC [Yersinia pestis Pestoides F]
gi|149366301|ref|ZP_01888336.1| cold shock protein [Yersinia pestis CA88-4125]
gi|157371062|ref|YP_001479051.1| cold shock-like protein CspC [Serratia proteamaculans 568]
gi|165927969|ref|ZP_02223801.1| conserved domain protein [Yersinia pestis biovar Orientalis str.
F1991016]
gi|166010855|ref|ZP_02231753.1| conserved domain protein [Yersinia pestis biovar Antiqua str.
E1979001]
gi|166211069|ref|ZP_02237104.1| conserved domain protein [Yersinia pestis biovar Antiqua str.
B42003004]
gi|167420033|ref|ZP_02311786.1| conserved domain protein [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|167427111|ref|ZP_02318864.1| conserved domain protein [Yersinia pestis biovar Mediaevalis str.
K1973002]
gi|170024699|ref|YP_001721204.1| cold shock-like protein CspC [Yersinia pseudotuberculosis YPIII]
gi|186895059|ref|YP_001872171.1| cold shock-like protein CspC [Yersinia pseudotuberculosis PB1/+]
gi|218928871|ref|YP_002346746.1| cold shock-like protein CspC [Yersinia pestis CO92]
gi|229894196|ref|ZP_04509379.1| stress protein, member of the CspA-family [Yersinia pestis
Pestoides A]
gi|229897121|ref|ZP_04512277.1| stress protein, member of the CspA-family [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229897848|ref|ZP_04512999.1| stress protein, member of the CspA-family [Yersinia pestis biovar
Orientalis str. India 195]
gi|229902921|ref|ZP_04518038.1| stress protein, member of the CspA-family [Yersinia pestis
Nepal516]
gi|257168081|ref|YP_003169746.1| cold shock-like protein CspC [Yersinia pestis KIM10+]
gi|270262270|ref|ZP_06190542.1| Cold shock-like protein CspC [Serratia odorifera 4Rx13]
gi|270486706|ref|ZP_06203780.1| transcriptional repressor activity CueR [Yersinia pestis KIM D27]
gi|284988616|ref|YP_003422337.1| cold shock protein [Yersinia pseudotuberculosis IP 31758]
gi|293395700|ref|ZP_06639982.1| MerR family copper efflux regulator [Serratia odorifera DSM 4582]
gi|322833600|ref|YP_004213627.1| cold-shock protein [Rahnella sp. Y9602]
gi|332162025|ref|YP_004298602.1| cold shock-like protein CspC [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|333927766|ref|YP_004501345.1| cold-shock DNA-binding domain-containing protein [Serratia sp.
AS12]
gi|333932720|ref|YP_004506298.1| cold-shock DNA-binding domain-containing protein [Serratia
plymuthica AS9]
gi|354597690|ref|ZP_09015707.1| cold-shock DNA-binding domain protein [Brenneria sp. EniD312]
gi|383190767|ref|YP_005200895.1| cold shock protein [Rahnella aquatilis CIP 78.65 = ATCC 33071]
gi|383813892|ref|ZP_09969315.1| cold shock-like protein CspC [Serratia sp. M24T3]
gi|384140364|ref|YP_005523066.1| cold shock-like protein CspC [Yersinia pestis A1122]
gi|384258777|ref|YP_005402711.1| cold shock-like protein CspC [Rahnella aquatilis HX2]
gi|384415017|ref|YP_005624379.1| stress protein, member of the CspA-family [Yersinia pestis biovar
Medievalis str. Harbin 35]
gi|386329589|ref|YP_006025759.1| cold-shock protein [Serratia sp. AS13]
gi|386825573|ref|ZP_10112695.1| cold shock-like protein CspC [Serratia plymuthica PRI-2C]
gi|418242437|ref|ZP_12868948.1| cold shock-like protein CspC [Yersinia enterocolitica subsp.
palearctica PhRBD_Ye1]
gi|420258835|ref|ZP_14761560.1| cold shock-like protein CspC [Yersinia enterocolitica subsp.
enterocolitica WA-314]
gi|420546516|ref|ZP_15044496.1| cold shock-like protein CspC [Yersinia pestis PY-01]
gi|420551848|ref|ZP_15049268.1| cold shock-like protein CspC [Yersinia pestis PY-02]
gi|420557404|ref|ZP_15054158.1| cold shock-like protein CspC [Yersinia pestis PY-03]
gi|420562900|ref|ZP_15059001.1| cold shock-like protein CspC [Yersinia pestis PY-04]
gi|420567947|ref|ZP_15063579.1| cold shock-like protein CspC [Yersinia pestis PY-05]
gi|420573628|ref|ZP_15068729.1| cold shock-like protein CspC [Yersinia pestis PY-06]
gi|420578925|ref|ZP_15073534.1| cold shock-like protein CspC [Yersinia pestis PY-07]
gi|420584249|ref|ZP_15078366.1| cold shock-like protein CspC [Yersinia pestis PY-08]
gi|420589453|ref|ZP_15083052.1| cold shock-like protein CspC [Yersinia pestis PY-09]
gi|420594756|ref|ZP_15087824.1| cold shock-like protein CspC [Yersinia pestis PY-10]
gi|420600467|ref|ZP_15092925.1| cold shock-like protein CspC [Yersinia pestis PY-11]
gi|420605872|ref|ZP_15097771.1| cold shock-like protein CspC [Yersinia pestis PY-12]
gi|420611238|ref|ZP_15102615.1| cold shock-like protein CspC [Yersinia pestis PY-13]
gi|420616609|ref|ZP_15107345.1| 'Cold-shock' DNA-binding domain protein [Yersinia pestis PY-14]
gi|420621927|ref|ZP_15112067.1| cold shock-like protein CspC [Yersinia pestis PY-15]
gi|420627018|ref|ZP_15116686.1| cold shock-like protein CspC [Yersinia pestis PY-16]
gi|420632220|ref|ZP_15121375.1| cold shock-like protein CspC [Yersinia pestis PY-19]
gi|420637334|ref|ZP_15125959.1| cold shock-like protein CspC [Yersinia pestis PY-25]
gi|420642876|ref|ZP_15130983.1| cold shock-like protein CspC [Yersinia pestis PY-29]
gi|420648070|ref|ZP_15135717.1| cold shock-like protein CspC [Yersinia pestis PY-32]
gi|420653724|ref|ZP_15140792.1| cold shock-like protein CspC [Yersinia pestis PY-34]
gi|420659203|ref|ZP_15145719.1| cold shock-like protein CspC [Yersinia pestis PY-36]
gi|420664522|ref|ZP_15150480.1| cold shock-like protein CspC [Yersinia pestis PY-42]
gi|420669427|ref|ZP_15154930.1| 'Cold-shock' DNA-binding domain protein [Yersinia pestis PY-45]
gi|420674765|ref|ZP_15159789.1| cold shock-like protein CspC [Yersinia pestis PY-46]
gi|420680361|ref|ZP_15164856.1| cold shock-like protein CspC [Yersinia pestis PY-47]
gi|420685643|ref|ZP_15169579.1| cold shock-like protein CspC [Yersinia pestis PY-48]
gi|420690812|ref|ZP_15174148.1| cold shock-like protein CspC [Yersinia pestis PY-52]
gi|420696622|ref|ZP_15179236.1| cold shock-like protein CspC [Yersinia pestis PY-53]
gi|420702139|ref|ZP_15183847.1| 'Cold-shock' DNA-binding domain protein [Yersinia pestis PY-54]
gi|420707906|ref|ZP_15188658.1| cold shock-like protein CspC [Yersinia pestis PY-55]
gi|420713315|ref|ZP_15193504.1| cold shock-like protein CspC [Yersinia pestis PY-56]
gi|420718739|ref|ZP_15198235.1| cold shock-like protein CspC [Yersinia pestis PY-58]
gi|420724302|ref|ZP_15203048.1| cold shock-like protein CspC [Yersinia pestis PY-59]
gi|420729887|ref|ZP_15208045.1| cold shock-like protein CspC [Yersinia pestis PY-60]
gi|420734947|ref|ZP_15212622.1| cold shock-like protein CspC [Yersinia pestis PY-61]
gi|420740414|ref|ZP_15217544.1| cold shock-like protein CspC [Yersinia pestis PY-63]
gi|420745900|ref|ZP_15222298.1| cold shock-like protein CspC [Yersinia pestis PY-64]
gi|420751559|ref|ZP_15227209.1| cold shock-like protein CspC [Yersinia pestis PY-65]
gi|420756999|ref|ZP_15231808.1| cold shock-like protein CspC [Yersinia pestis PY-66]
gi|420762701|ref|ZP_15236573.1| cold shock-like protein CspC [Yersinia pestis PY-71]
gi|420767956|ref|ZP_15241312.1| cold shock-like protein CspC [Yersinia pestis PY-72]
gi|420772928|ref|ZP_15245783.1| cold shock-like protein CspC [Yersinia pestis PY-76]
gi|420778375|ref|ZP_15250621.1| cold shock-like protein CspC [Yersinia pestis PY-88]
gi|420783930|ref|ZP_15255483.1| cold shock-like protein CspC [Yersinia pestis PY-89]
gi|420789193|ref|ZP_15260159.1| 'Cold-shock' DNA-binding domain protein [Yersinia pestis PY-90]
gi|420794678|ref|ZP_15265101.1| cold shock-like protein CspC [Yersinia pestis PY-91]
gi|420799727|ref|ZP_15269639.1| cold shock-like protein CspC [Yersinia pestis PY-92]
gi|420805131|ref|ZP_15274515.1| cold shock-like protein CspC [Yersinia pestis PY-93]
gi|420810423|ref|ZP_15279291.1| 'Cold-shock' DNA-binding domain protein [Yersinia pestis PY-94]
gi|420816090|ref|ZP_15284386.1| cold shock-like protein CspC [Yersinia pestis PY-95]
gi|420821282|ref|ZP_15289071.1| cold shock-like protein CspC [Yersinia pestis PY-96]
gi|420826373|ref|ZP_15293630.1| cold shock-like protein CspC [Yersinia pestis PY-98]
gi|420832148|ref|ZP_15298851.1| cold shock-like protein CspC [Yersinia pestis PY-99]
gi|420836965|ref|ZP_15303197.1| cold shock-like protein CspC [Yersinia pestis PY-100]
gi|420842123|ref|ZP_15307872.1| cold shock-like protein CspC [Yersinia pestis PY-101]
gi|420847766|ref|ZP_15312955.1| cold shock-like protein CspC [Yersinia pestis PY-102]
gi|420853232|ref|ZP_15317708.1| cold shock-like protein CspC [Yersinia pestis PY-103]
gi|420858694|ref|ZP_15322406.1| cold shock-like protein CspC [Yersinia pestis PY-113]
gi|421763221|ref|ZP_16200016.1| cold shock-like protein CspC [Yersinia pestis INS]
gi|421784008|ref|ZP_16220451.1| cold shock-like protein cspC [Serratia plymuthica A30]
gi|440231282|ref|YP_007345075.1| cold shock protein [Serratia marcescens FGI94]
gi|448242600|ref|YP_007406653.1| stress protein, member of the CspA-family [Serratia marcescens
WW4]
gi|45436169|gb|AAS61725.1| cold shock protein [Yersinia pestis biovar Microtus str. 91001]
gi|51589242|emb|CAH20863.1| cold shock protein [Yersinia pseudotuberculosis IP 32953]
gi|108776185|gb|ABG18704.1| cold-shock DNA-binding protein family [Yersinia pestis Nepal516]
gi|108779029|gb|ABG13087.1| cold-shock DNA-binding protein family [Yersinia pestis Antiqua]
gi|115347482|emb|CAL20388.1| cold shock protein [Yersinia pestis CO92]
gi|122089020|emb|CAL11834.1| cold shock-like protein cspC1 [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|145210359|gb|ABP39766.1| cold-shock DNA-binding protein family [Yersinia pestis Pestoides
F]
gi|149292714|gb|EDM42788.1| cold shock protein [Yersinia pestis CA88-4125]
gi|157322826|gb|ABV41923.1| cold-shock DNA-binding domain protein [Serratia proteamaculans
568]
gi|165920026|gb|EDR37327.1| conserved domain protein [Yersinia pestis biovar Orientalis str.
F1991016]
gi|165990199|gb|EDR42500.1| conserved domain protein [Yersinia pestis biovar Antiqua str.
E1979001]
gi|166208249|gb|EDR52729.1| conserved domain protein [Yersinia pestis biovar Antiqua str.
B42003004]
gi|166961728|gb|EDR57749.1| conserved domain protein [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|167053904|gb|EDR63736.1| conserved domain protein [Yersinia pestis biovar Mediaevalis str.
K1973002]
gi|169751233|gb|ACA68751.1| cold-shock DNA-binding domain protein [Yersinia
pseudotuberculosis YPIII]
gi|186698085|gb|ACC88714.1| cold-shock DNA-binding domain protein [Yersinia
pseudotuberculosis PB1/+]
gi|229680368|gb|EEO76467.1| stress protein, member of the CspA-family [Yersinia pestis
Nepal516]
gi|229688889|gb|EEO80954.1| stress protein, member of the CspA-family [Yersinia pestis biovar
Orientalis str. India 195]
gi|229693458|gb|EEO83507.1| stress protein, member of the CspA-family [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229703594|gb|EEO90610.1| stress protein, member of the CspA-family [Yersinia pestis
Pestoides A]
gi|270044146|gb|EFA17238.1| Cold shock-like protein CspC [Serratia odorifera 4Rx13]
gi|270335210|gb|EFA45987.1| transcriptional repressor activity CueR [Yersinia pestis KIM D27]
gi|291421637|gb|EFE94884.1| MerR family copper efflux regulator [Serratia odorifera DSM 4582]
gi|320015521|gb|ADV99092.1| stress protein, member of the CspA-family [Yersinia pestis biovar
Medievalis str. Harbin 35]
gi|321168801|gb|ADW74500.1| cold-shock DNA-binding domain protein [Rahnella sp. Y9602]
gi|325666255|gb|ADZ42899.1| cold shock-like protein CspC [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|330860843|emb|CBX71127.1| cold shock-like protein cspC [Yersinia enterocolitica W22703]
gi|333474327|gb|AEF46037.1| cold-shock DNA-binding domain protein [Serratia plymuthica AS9]
gi|333491826|gb|AEF50988.1| cold-shock DNA-binding domain protein [Serratia sp. AS12]
gi|333961922|gb|AEG28695.1| cold-shock DNA-binding domain protein [Serratia sp. AS13]
gi|342855493|gb|AEL74046.1| cold shock-like protein CspC [Yersinia pestis A1122]
gi|351778165|gb|EHB20335.1| cold shock-like protein CspC [Yersinia enterocolitica subsp.
palearctica PhRBD_Ye1]
gi|353675625|gb|EHD21658.1| cold-shock DNA-binding domain protein [Brenneria sp. EniD312]
gi|371589025|gb|AEX52755.1| cold shock protein [Rahnella aquatilis CIP 78.65 = ATCC 33071]
gi|380754753|gb|AFE59144.1| cold shock-like protein CspC [Rahnella aquatilis HX2]
gi|383297090|gb|EIC85401.1| cold shock-like protein CspC [Serratia sp. M24T3]
gi|386377576|gb|EIJ18391.1| cold shock-like protein CspC [Serratia plymuthica PRI-2C]
gi|391427611|gb|EIQ89681.1| cold shock-like protein CspC [Yersinia pestis PY-01]
gi|391429060|gb|EIQ90952.1| cold shock-like protein CspC [Yersinia pestis PY-02]
gi|391430363|gb|EIQ92090.1| cold shock-like protein CspC [Yersinia pestis PY-03]
gi|391443127|gb|EIR03474.1| cold shock-like protein CspC [Yersinia pestis PY-04]
gi|391444442|gb|EIR04664.1| cold shock-like protein CspC [Yersinia pestis PY-05]
gi|391447443|gb|EIR07355.1| cold shock-like protein CspC [Yersinia pestis PY-06]
gi|391459907|gb|EIR18650.1| cold shock-like protein CspC [Yersinia pestis PY-07]
gi|391461077|gb|EIR19717.1| cold shock-like protein CspC [Yersinia pestis PY-08]
gi|391462902|gb|EIR21357.1| cold shock-like protein CspC [Yersinia pestis PY-09]
gi|391476044|gb|EIR33196.1| cold shock-like protein CspC [Yersinia pestis PY-10]
gi|391477637|gb|EIR34636.1| cold shock-like protein CspC [Yersinia pestis PY-11]
gi|391478042|gb|EIR35006.1| cold shock-like protein CspC [Yersinia pestis PY-12]
gi|391492073|gb|EIR47575.1| cold shock-like protein CspC [Yersinia pestis PY-13]
gi|391492969|gb|EIR48362.1| cold shock-like protein CspC [Yersinia pestis PY-15]
gi|391494986|gb|EIR50145.1| 'Cold-shock' DNA-binding domain protein [Yersinia pestis PY-14]
gi|391507751|gb|EIR61551.1| cold shock-like protein CspC [Yersinia pestis PY-16]
gi|391508082|gb|EIR61860.1| cold shock-like protein CspC [Yersinia pestis PY-19]
gi|391512740|gb|EIR66033.1| cold shock-like protein CspC [Yersinia pestis PY-25]
gi|391523232|gb|EIR75559.1| cold shock-like protein CspC [Yersinia pestis PY-29]
gi|391525903|gb|EIR78001.1| cold shock-like protein CspC [Yersinia pestis PY-34]
gi|391526878|gb|EIR78863.1| cold shock-like protein CspC [Yersinia pestis PY-32]
gi|391538987|gb|EIR89742.1| cold shock-like protein CspC [Yersinia pestis PY-36]
gi|391541512|gb|EIR92045.1| cold shock-like protein CspC [Yersinia pestis PY-42]
gi|391543010|gb|EIR93387.1| 'Cold-shock' DNA-binding domain protein [Yersinia pestis PY-45]
gi|391556809|gb|EIS05865.1| cold shock-like protein CspC [Yersinia pestis PY-46]
gi|391557169|gb|EIS06190.1| cold shock-like protein CspC [Yersinia pestis PY-47]
gi|391558332|gb|EIS07223.1| cold shock-like protein CspC [Yersinia pestis PY-48]
gi|391572004|gb|EIS19289.1| cold shock-like protein CspC [Yersinia pestis PY-52]
gi|391572552|gb|EIS19768.1| cold shock-like protein CspC [Yersinia pestis PY-53]
gi|391581504|gb|EIS27380.1| 'Cold-shock' DNA-binding domain protein [Yersinia pestis PY-54]
gi|391584630|gb|EIS30135.1| cold shock-like protein CspC [Yersinia pestis PY-55]
gi|391587812|gb|EIS32936.1| cold shock-like protein CspC [Yersinia pestis PY-56]
gi|391600598|gb|EIS44114.1| cold shock-like protein CspC [Yersinia pestis PY-58]
gi|391601252|gb|EIS44691.1| cold shock-like protein CspC [Yersinia pestis PY-60]
gi|391602849|gb|EIS46097.1| cold shock-like protein CspC [Yersinia pestis PY-59]
gi|391615709|gb|EIS57445.1| cold shock-like protein CspC [Yersinia pestis PY-61]
gi|391616522|gb|EIS58172.1| cold shock-like protein CspC [Yersinia pestis PY-63]
gi|391622075|gb|EIS63043.1| cold shock-like protein CspC [Yersinia pestis PY-64]
gi|391627714|gb|EIS67891.1| cold shock-like protein CspC [Yersinia pestis PY-65]
gi|391638508|gb|EIS77305.1| cold shock-like protein CspC [Yersinia pestis PY-66]
gi|391638851|gb|EIS77607.1| cold shock-like protein CspC [Yersinia pestis PY-71]
gi|391641200|gb|EIS79650.1| cold shock-like protein CspC [Yersinia pestis PY-72]
gi|391650963|gb|EIS88195.1| cold shock-like protein CspC [Yersinia pestis PY-76]
gi|391656011|gb|EIS92688.1| cold shock-like protein CspC [Yersinia pestis PY-88]
gi|391660459|gb|EIS96615.1| cold shock-like protein CspC [Yersinia pestis PY-89]
gi|391664238|gb|EIS99990.1| 'Cold-shock' DNA-binding domain protein [Yersinia pestis PY-90]
gi|391671184|gb|EIT06155.1| cold shock-like protein CspC [Yersinia pestis PY-91]
gi|391681842|gb|EIT15768.1| cold shock-like protein CspC [Yersinia pestis PY-93]
gi|391683358|gb|EIT17142.1| cold shock-like protein CspC [Yersinia pestis PY-92]
gi|391684067|gb|EIT17788.1| 'Cold-shock' DNA-binding domain protein [Yersinia pestis PY-94]
gi|391695637|gb|EIT28191.1| cold shock-like protein CspC [Yersinia pestis PY-95]
gi|391699063|gb|EIT31291.1| cold shock-like protein CspC [Yersinia pestis PY-96]
gi|391700423|gb|EIT32520.1| cold shock-like protein CspC [Yersinia pestis PY-98]
gi|391709691|gb|EIT40843.1| cold shock-like protein CspC [Yersinia pestis PY-99]
gi|391716424|gb|EIT46876.1| cold shock-like protein CspC [Yersinia pestis PY-100]
gi|391717249|gb|EIT47634.1| cold shock-like protein CspC [Yersinia pestis PY-101]
gi|391728135|gb|EIT57277.1| cold shock-like protein CspC [Yersinia pestis PY-102]
gi|391730686|gb|EIT59484.1| cold shock-like protein CspC [Yersinia pestis PY-103]
gi|391735439|gb|EIT63580.1| cold shock-like protein CspC [Yersinia pestis PY-113]
gi|404513701|gb|EKA27511.1| cold shock-like protein CspC [Yersinia enterocolitica subsp.
enterocolitica WA-314]
gi|407753871|gb|EKF64011.1| cold shock-like protein cspC [Serratia plymuthica A30]
gi|411176122|gb|EKS46142.1| cold shock-like protein CspC [Yersinia pestis INS]
gi|440052987|gb|AGB82890.1| cold shock protein [Serratia marcescens FGI94]
gi|445212964|gb|AGE18634.1| stress protein, member of the CspA-family [Serratia marcescens
WW4]
gi|453066938|gb|EMF07856.1| cold shock-like protein CspC [Serratia marcescens VGH107]
Length = 69
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 4/68 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
++G VK+++ +GFGFIT D +D+FVH S+I F++L G+ V+F I G+K
Sbjct: 4 IKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNG----FKTLAEGQNVEFEIQDGQK 59
Query: 69 DIEAINVT 76
A+NVT
Sbjct: 60 GPSAVNVT 67
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 4/68 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
++G VK+++ +GFGFIT D +D+FVH S+I F++L G+ V+F I G+K
Sbjct: 4 IKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNG----FKTLAEGQNVEFEIQDGQK 59
Query: 170 DIEAINVT 177
A+NVT
Sbjct: 60 GPSAVNVT 67
>gi|50121319|ref|YP_050486.1| cold shock-like protein CspC [Pectobacterium atrosepticum
SCRI1043]
gi|85059298|ref|YP_455000.1| cold shock-like protein CspC [Sodalis glossinidius str.
'morsitans']
gi|227111514|ref|ZP_03825170.1| cold shock-like protein CspC [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
gi|227327800|ref|ZP_03831824.1| cold shock-like protein CspC [Pectobacterium carotovorum subsp.
carotovorum WPP14]
gi|253688307|ref|YP_003017497.1| cold-shock DNA-binding domain-containing protein [Pectobacterium
carotovorum subsp. carotovorum PC1]
gi|261821484|ref|YP_003259590.1| cold shock-like protein CspC [Pectobacterium wasabiae WPP163]
gi|403058417|ref|YP_006646634.1| cold shock-like protein CspC [Pectobacterium carotovorum subsp.
carotovorum PCC21]
gi|421079660|ref|ZP_15540598.1| Cold shock-like protein CspC [Pectobacterium wasabiae CFBP 3304]
gi|49611845|emb|CAG75294.1| cold shock protein [Pectobacterium atrosepticum SCRI1043]
gi|84779818|dbj|BAE74595.1| cold shock protein [Sodalis glossinidius str. 'morsitans']
gi|251754885|gb|ACT12961.1| cold-shock DNA-binding domain protein [Pectobacterium carotovorum
subsp. carotovorum PC1]
gi|261605497|gb|ACX87983.1| cold-shock DNA-binding domain protein [Pectobacterium wasabiae
WPP163]
gi|385871724|gb|AFI90244.1| Cold shock-like protein cspE [Pectobacterium sp. SCC3193]
gi|401705746|gb|EJS95931.1| Cold shock-like protein CspC [Pectobacterium wasabiae CFBP 3304]
gi|402805743|gb|AFR03381.1| cold shock-like protein CspC [Pectobacterium carotovorum subsp.
carotovorum PCC21]
Length = 69
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 4/68 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
++G VK+++ +GFGFIT D +D+FVH S+I F++L G+ V+F I G+K
Sbjct: 4 IKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNG----FKTLAEGQNVEFEIQDGQK 59
Query: 69 DIEAINVT 76
A+NVT
Sbjct: 60 GPSAVNVT 67
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 4/68 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
++G VK+++ +GFGFIT D +D+FVH S+I F++L G+ V+F I G+K
Sbjct: 4 IKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNG----FKTLAEGQNVEFEIQDGQK 59
Query: 170 DIEAINVT 177
A+NVT
Sbjct: 60 GPSAVNVT 67
>gi|297624311|ref|YP_003705745.1| cold-shock DNA-binding domain-containing protein [Truepera
radiovictrix DSM 17093]
gi|297165491|gb|ADI15202.1| cold-shock DNA-binding domain protein [Truepera radiovictrix DSM
17093]
Length = 79
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 4/73 (5%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 70
G VK++ +++GFGFI + D D+F H S+I ++SL G+ V+F + G+K +
Sbjct: 4 GRVKWFSNEKGFGFIEQDDGGADVFCHFSAITGSG----YRSLNEGDEVEFEVEQGQKGL 59
Query: 71 EAINVTGPNGIPV 83
+A NVT N P
Sbjct: 60 QAKNVTVTNAAPA 72
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 4/73 (5%)
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 171
G VK++ +++GFGFI + D D+F H S+I ++SL G+ V+F + G+K +
Sbjct: 4 GRVKWFSNEKGFGFIEQDDGGADVFCHFSAITGSG----YRSLNEGDEVEFEVEQGQKGL 59
Query: 172 EAINVTGPNGIPV 184
+A NVT N P
Sbjct: 60 QAKNVTVTNAAPA 72
>gi|86157700|ref|YP_464485.1| cold-shock DNA-binding protein family protein [Anaeromyxobacter
dehalogenans 2CP-C]
gi|197122991|ref|YP_002134942.1| cold-shock DNA-binding domain-containing protein
[Anaeromyxobacter sp. K]
gi|220917780|ref|YP_002493084.1| cold-shock DNA-binding domain-containing protein
[Anaeromyxobacter dehalogenans 2CP-1]
gi|85774211|gb|ABC81048.1| cold-shock DNA-binding protein family [Anaeromyxobacter
dehalogenans 2CP-C]
gi|196172840|gb|ACG73813.1| cold-shock DNA-binding domain protein [Anaeromyxobacter sp. K]
gi|219955634|gb|ACL66018.1| cold-shock DNA-binding domain protein [Anaeromyxobacter
dehalogenans 2CP-1]
Length = 67
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 70
G VK+++ +GFGFI++ ED+FVH ++IV F+SL G+ V+F + G K +
Sbjct: 4 GTVKWFNDAKGFGFISQDGGGEDVFVHHTAIVAEG----FRSLQEGQRVEFEVKKGPKGL 59
Query: 71 EAINVTGP 78
+A NV G
Sbjct: 60 QAANVRGA 67
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 171
G VK+++ +GFGFI++ ED+FVH ++IV F+SL G+ V+F + G K +
Sbjct: 4 GTVKWFNDAKGFGFISQDGGGEDVFVHHTAIVAEG----FRSLQEGQRVEFEVKKGPKGL 59
Query: 172 EAINVTGP 179
+A NV G
Sbjct: 60 QAANVRGA 67
>gi|188996315|ref|YP_001930566.1| cold-shock DNA-binding domain-containing protein
[Sulfurihydrogenibium sp. YO3AOP1]
gi|225848260|ref|YP_002728423.1| hypothetical protein SULAZ_0431 [Sulfurihydrogenibium azorense
Az-Fu1]
gi|188931382|gb|ACD66012.1| cold-shock DNA-binding domain protein [Sulfurihydrogenibium sp.
YO3AOP1]
gi|225643394|gb|ACN98444.1| conserved domain protein [Sulfurihydrogenibium azorense Az-Fu1]
Length = 68
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 44/67 (65%), Gaps = 4/67 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+ G VK+++SK+GFGFITR D + D+FVH S+I + F++L G+ V+F I +K
Sbjct: 3 ITGTVKWFNSKKGFGFITRDDGQGDVFVHFSAI----QSRGFKTLEEGQKVEFEIAQDEK 58
Query: 69 DIEAINV 75
+A NV
Sbjct: 59 GPKAANV 65
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 44/67 (65%), Gaps = 4/67 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+ G VK+++SK+GFGFITR D + D+FVH S+I + F++L G+ V+F I +K
Sbjct: 3 ITGTVKWFNSKKGFGFITRDDGQGDVFVHFSAI----QSRGFKTLEEGQKVEFEIAQDEK 58
Query: 170 DIEAINV 176
+A NV
Sbjct: 59 GPKAANV 65
>gi|220933692|ref|YP_002512591.1| cold-shock DNA-binding domain-containing protein
[Thioalkalivibrio sulfidophilus HL-EbGr7]
gi|219995002|gb|ACL71604.1| cold-shock DNA-binding domain protein [Thioalkalivibrio
sulfidophilus HL-EbGr7]
Length = 67
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 41/66 (62%), Gaps = 4/66 (6%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 70
GIVK+++ +GFGFI + D+FVH S+I + F++L G+ V F + G K +
Sbjct: 4 GIVKWFNESKGFGFIAPEEGGADVFVHYSAI----QAEGFKTLAEGQRVSFQVQQGPKGL 59
Query: 71 EAINVT 76
+A+NVT
Sbjct: 60 QAVNVT 65
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 41/66 (62%), Gaps = 4/66 (6%)
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 171
GIVK+++ +GFGFI + D+FVH S+I + F++L G+ V F + G K +
Sbjct: 4 GIVKWFNESKGFGFIAPEEGGADVFVHYSAI----QAEGFKTLAEGQRVSFQVQQGPKGL 59
Query: 172 EAINVT 177
+A+NVT
Sbjct: 60 QAVNVT 65
>gi|400406444|ref|YP_006589192.1| cold shock protein [secondary endosymbiont of Heteropsylla
cubana]
gi|400364697|gb|AFP85764.1| cold shock protein [secondary endosymbiont of Heteropsylla
cubana]
Length = 69
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 4/68 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
++G VK+++ +GFGFIT D +D+FVH S+I F++L G+ V+F I G+K
Sbjct: 4 IKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNG----FKTLAEGQNVEFEIQDGQK 59
Query: 69 DIEAINVT 76
A+NVT
Sbjct: 60 GPSAVNVT 67
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 4/68 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
++G VK+++ +GFGFIT D +D+FVH S+I F++L G+ V+F I G+K
Sbjct: 4 IKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNG----FKTLAEGQNVEFEIQDGQK 59
Query: 170 DIEAINVT 177
A+NVT
Sbjct: 60 GPSAVNVT 67
>gi|421494244|ref|ZP_15941594.1| CSPA [Morganella morganii subsp. morganii KT]
gi|400191411|gb|EJO24557.1| CSPA [Morganella morganii subsp. morganii KT]
Length = 83
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 42/74 (56%), Gaps = 7/74 (9%)
Query: 5 EIH---TVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDF 61
EIH T+ G VK+++ +GFGFIT D +D+FVH S+I F+SL G+ V F
Sbjct: 11 EIHMSATITGTVKWFNDDKGFGFITPADGSKDVFVHFSAI----QSDSFKSLAEGQQVSF 66
Query: 62 NIGVGKKDIEAINV 75
I G K A NV
Sbjct: 67 TIENGMKGPAAANV 80
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 109 TVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGK 168
T+ G VK+++ +GFGFIT D +D+FVH S+I F+SL G+ V F I G
Sbjct: 17 TITGTVKWFNDDKGFGFITPADGSKDVFVHFSAI----QSDSFKSLAEGQQVSFTIENGM 72
Query: 169 KDIEAINV 176
K A NV
Sbjct: 73 KGPAAANV 80
>gi|333027864|ref|ZP_08455928.1| putative cold shock protein [Streptomyces sp. Tu6071]
gi|332747716|gb|EGJ78157.1| putative cold shock protein [Streptomyces sp. Tu6071]
Length = 86
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 50/89 (56%), Gaps = 6/89 (6%)
Query: 94 VSGTYRNDSFFPA-VHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQ 152
GTYR+ P + G VK+++S++GFGFI + D+F H S+I F+
Sbjct: 3 AQGTYRSHLSTPQEIDMATGTVKWFNSEKGFGFIEQDGGGPDVFAHYSNIASSG----FR 58
Query: 153 SLGLGEIVDFNIGVGKKDIEAINVTGPNG 181
L G+ V+F++ G+K ++A N+T P G
Sbjct: 59 ELIEGQKVEFDVTQGQKGLQAENIT-PKG 86
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 5/79 (6%)
Query: 2 TKFEIHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDF 61
T EI G VK+++S++GFGFI + D+F H S+I F+ L G+ V+F
Sbjct: 13 TPQEIDMATGTVKWFNSEKGFGFIEQDGGGPDVFAHYSNIASSG----FRELIEGQKVEF 68
Query: 62 NIGVGKKDIEAINVTGPNG 80
++ G+K ++A N+T P G
Sbjct: 69 DVTQGQKGLQAENIT-PKG 86
>gi|325295337|ref|YP_004281851.1| cold-shock protein [Desulfurobacterium thermolithotrophum DSM
11699]
gi|325065785|gb|ADY73792.1| cold-shock DNA-binding domain protein [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 68
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 42/65 (64%), Gaps = 5/65 (7%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 70
G VK++DSK+G+GFIT DN +D+FVH + I F++L GE V FNI K +
Sbjct: 6 GTVKWFDSKKGYGFIT-ADNGQDVFVHYTGIAGTG----FRTLEEGERVSFNITESNKGL 60
Query: 71 EAINV 75
+A++V
Sbjct: 61 KAVDV 65
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 42/65 (64%), Gaps = 5/65 (7%)
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 171
G VK++DSK+G+GFIT DN +D+FVH + I F++L GE V FNI K +
Sbjct: 6 GTVKWFDSKKGYGFIT-ADNGQDVFVHYTGIAGTG----FRTLEEGERVSFNITESNKGL 60
Query: 172 EAINV 176
+A++V
Sbjct: 61 KAVDV 65
>gi|294677870|ref|YP_003578485.1| cold-shock DNA-binding domain-containing protein [Rhodobacter
capsulatus SB 1003]
gi|294476690|gb|ADE86078.1| cold-shock DNA-binding domain protein [Rhodobacter capsulatus SB
1003]
Length = 177
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 76/175 (43%), Gaps = 19/175 (10%)
Query: 7 HTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVG 66
V G VK++D+ +GFGFI + DI +H + + + G+ +V G
Sbjct: 9 REVAGRVKWFDAGKGFGFILDGEGGPDILLHANVLRNFGQSSVADNAGIRVLVQATP-RG 67
Query: 67 KKDIEAINVTGPNG----IPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRG 122
+ +E + ++ P P++ ++ E ++ A+ VK++D +G
Sbjct: 68 AQAVEVLEISPPETDNRLAPIEDLGETDPEVIA----------ALPLEPARVKWFDKGKG 117
Query: 123 FGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVT 177
FGF ED+F+H V++ + F L GE V + G++ A +T
Sbjct: 118 FGFANVFGRPEDVFIH----VEVLRRSGFADLAPGEAVCLRVIEGRRGRMAAQIT 168
>gi|390360707|ref|XP_003729754.1| PREDICTED: uncharacterized protein LOC100893638 [Strongylocentrotus
purpuratus]
Length = 685
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 82/177 (46%), Gaps = 26/177 (14%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 70
G+V Y+ KR FGFI D +F H S + + N + +G+ V F++ VG K
Sbjct: 95 GVVNQYNDKRSFGFIRVNDTYNKVFFHISDVPEKN-------IEVGDEVRFDLFVGPKGY 147
Query: 71 EAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHT-VRGIVKFYDSKRGFGFITRL 129
A I V + + ++S +H V G+VK Y+ KR FGFI
Sbjct: 148 YA------ESIEVLNDVDNDEDNDDNDSESESDEAPIHEEVAGVVKQYNDKRRFGFIWVN 201
Query: 130 DNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK-----DIEAINVTGPNG 181
D +F H S++ P+K+ + +G+ V F++ VG K IE +N+ G +
Sbjct: 202 DTYNKVFFHISAV----PEKYIE---VGDEVRFDLFVGPKGYYAESIEVLNLDGEDS 251
Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 84/184 (45%), Gaps = 38/184 (20%)
Query: 6 IHT-VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIG 64
IH V G+VK Y+ KR FGFI D +F H S++ P+K+ + +G+ V F++
Sbjct: 178 IHEEVAGVVKQYNDKRRFGFIWVNDTYNKVFFHISAV----PEKYIE---VGDEVRFDLF 230
Query: 65 VGKK-----DIEAINVTGP--NGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFY 117
VG K IE +N+ G + P + + + + T G+V Y
Sbjct: 231 VGPKGYYAESIEVLNLDGEDSDSEPDEAVNQEALLNCNAT--------------GVVTRY 276
Query: 118 DSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI--EAIN 175
++R FGFI + +F H S + F+ + + + V+F++ VG K + IN
Sbjct: 277 LNRRRFGFIKVNETYSKVFFHVSEVS-------FKPVAVQDQVEFHLYVGPKGYFAKCIN 329
Query: 176 VTGP 179
P
Sbjct: 330 FVSP 333
Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 69/164 (42%), Gaps = 32/164 (19%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G V + K GFGFIT D K +F H S + + S+ +G+ V F++ +G K
Sbjct: 11 VTGEVVHFKKKGGFGFITYDDAK--VFFHISEVS-------YSSVEVGDEVTFDLYMGSK 61
Query: 69 DIEAINV---TGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGF 125
A +V T + + G Y G+V Y+ KR FGF
Sbjct: 62 GYIAKSVQFSTWDDDNNESESESGEELIQQGEY-------------GVVNQYNDKRSFGF 108
Query: 126 ITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
I D +F H S + + N + +G+ V F++ VG K
Sbjct: 109 IRVNDTYNKVFFHISDVPEKN-------IEVGDEVRFDLFVGPK 145
>gi|238794630|ref|ZP_04638236.1| Cold shock-like protein cspI [Yersinia intermedia ATCC 29909]
gi|238797908|ref|ZP_04641399.1| Cold shock-like protein cspI [Yersinia mollaretii ATCC 43969]
gi|238718213|gb|EEQ10038.1| Cold shock-like protein cspI [Yersinia mollaretii ATCC 43969]
gi|238726019|gb|EEQ17567.1| Cold shock-like protein cspI [Yersinia intermedia ATCC 29909]
Length = 66
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 44/67 (65%), Gaps = 4/67 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+ G+VK++D+ +GFGFIT D +D+FVH S+I + F++L G+ V+F+I G K
Sbjct: 1 MTGLVKWFDAGKGFGFITPADGSKDVFVHFSAIQSND----FKTLDEGQKVEFSIENGAK 56
Query: 69 DIEAINV 75
A+NV
Sbjct: 57 GPSAVNV 63
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 44/67 (65%), Gaps = 4/67 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+ G+VK++D+ +GFGFIT D +D+FVH S+I + F++L G+ V+F+I G K
Sbjct: 1 MTGLVKWFDAGKGFGFITPADGSKDVFVHFSAIQSND----FKTLDEGQKVEFSIENGAK 56
Query: 170 DIEAINV 176
A+NV
Sbjct: 57 GPSAVNV 63
>gi|15802236|ref|NP_288259.1| cold shock-like protein CspC [Escherichia coli O157:H7 str.
EDL933]
gi|15831787|ref|NP_310560.1| cold shock-like protein CspC [Escherichia coli O157:H7 str.
Sakai]
gi|16129777|ref|NP_416337.1| stress protein, member of the CspA-family [Escherichia coli str.
K-12 substr. MG1655]
gi|16760726|ref|NP_456343.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Typhi str. CT18]
gi|16765178|ref|NP_460793.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|26248085|ref|NP_754125.1| cold shock-like protein CspC [Escherichia coli CFT073]
gi|29141516|ref|NP_804858.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|30062921|ref|NP_837092.1| cold shock-like protein CspC [Shigella flexneri 2a str. 2457T]
gi|56413244|ref|YP_150319.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|62180401|ref|YP_216818.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|74311864|ref|YP_310283.1| cold shock-like protein CspC [Shigella sonnei Ss046]
gi|82777211|ref|YP_403560.1| cold shock-like protein CspC [Shigella dysenteriae Sd197]
gi|91211042|ref|YP_541028.1| cold shock-like protein CspC [Escherichia coli UTI89]
gi|110641940|ref|YP_669670.1| cold shock-like protein CspC [Escherichia coli 536]
gi|110805383|ref|YP_688903.1| cold shock-like protein CspC [Shigella flexneri 5 str. 8401]
gi|146312039|ref|YP_001177113.1| cold shock-like protein CspC [Enterobacter sp. 638]
gi|152970887|ref|YP_001335996.1| cold shock-like protein CspC [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|157145410|ref|YP_001452730.1| cold shock-like protein CspC [Citrobacter koseri ATCC BAA-895]
gi|157157347|ref|YP_001463124.1| cold shock-like protein CspC [Escherichia coli E24377A]
gi|157161289|ref|YP_001458607.1| cold shock-like protein CspC [Escherichia coli HS]
gi|161503039|ref|YP_001570151.1| cold shock-like protein CspC [Salmonella enterica subsp. arizonae
serovar 62:z4,z23:- str. RSK2980]
gi|161613652|ref|YP_001587617.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Paratyphi B str. SPB7]
gi|167553480|ref|ZP_02347229.1| cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|167993785|ref|ZP_02574878.1| cold shock protein CspC [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|168234267|ref|ZP_02659325.1| cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
gi|168241432|ref|ZP_02666364.1| cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|168259923|ref|ZP_02681896.1| cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|168462668|ref|ZP_02696599.1| cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|168820589|ref|ZP_02832589.1| cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|170081478|ref|YP_001730798.1| cold shock-like protein CspC [Escherichia coli str. K-12 substr.
DH10B]
gi|170682897|ref|YP_001743423.1| cold shock-like protein CspC [Escherichia coli SMS-3-5]
gi|170769370|ref|ZP_02903823.1| cold shock protein CspC [Escherichia albertii TW07627]
gi|170770188|ref|ZP_02904641.1| cold shock protein CspC [Escherichia albertii TW07627]
gi|187733001|ref|YP_001880620.1| cold shock-like protein CspC [Shigella boydii CDC 3083-94]
gi|188492990|ref|ZP_03000260.1| cold shock DNA-binding protein [Escherichia coli 53638]
gi|188533664|ref|YP_001907461.1| cold shock-like protein CspC [Erwinia tasmaniensis Et1/99]
gi|189403500|ref|ZP_02795809.2| cold shock protein CspC [Escherichia coli O157:H7 str. EC4486]
gi|189404552|ref|ZP_02790213.2| cold shock protein CspC [Escherichia coli O157:H7 str. EC4501]
gi|189405077|ref|ZP_02813248.2| cold shock protein CspC [Escherichia coli O157:H7 str. EC869]
gi|191171767|ref|ZP_03033314.1| cold shock protein CspC [Escherichia coli F11]
gi|194430509|ref|ZP_03062983.1| cold shock protein CspC [Escherichia coli B171]
gi|194434939|ref|ZP_03067183.1| cold shock protein CspC [Shigella dysenteriae 1012]
gi|194446619|ref|YP_002041093.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|194447468|ref|YP_002045883.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|194471139|ref|ZP_03077123.1| cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|194735301|ref|YP_002114871.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|195940304|ref|ZP_03085686.1| cold shock-like protein CspC [Escherichia coli O157:H7 str.
EC4024]
gi|197247963|ref|YP_002146187.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|197265795|ref|ZP_03165869.1| cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|197362170|ref|YP_002141807.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|198245948|ref|YP_002215303.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|200391118|ref|ZP_03217729.1| cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|205352499|ref|YP_002226300.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|206580814|ref|YP_002237792.1| cold-shock protein [Klebsiella pneumoniae 342]
gi|207856657|ref|YP_002243308.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|208810722|ref|ZP_03252598.1| cold shock protein CspC [Escherichia coli O157:H7 str. EC4206]
gi|208816517|ref|ZP_03257637.1| cold shock protein CspC [Escherichia coli O157:H7 str. EC4045]
gi|208819312|ref|ZP_03259632.1| cold shock protein CspC [Escherichia coli O157:H7 str. EC4042]
gi|209397128|ref|YP_002270903.1| cold shock-like protein CspC [Escherichia coli O157:H7 str.
EC4115]
gi|209919188|ref|YP_002293272.1| cold shock-like protein CspC [Escherichia coli SE11]
gi|213028972|ref|ZP_03343419.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Typhi str. 404ty]
gi|213162944|ref|ZP_03348654.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Typhi str. E00-7866]
gi|213420305|ref|ZP_03353371.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Typhi str. E01-6750]
gi|213424204|ref|ZP_03357069.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Typhi str. E02-1180]
gi|213581262|ref|ZP_03363088.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Typhi str. E98-0664]
gi|213620853|ref|ZP_03373636.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Typhi str. E98-2068]
gi|213649656|ref|ZP_03379709.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Typhi str. J185]
gi|213855888|ref|ZP_03384128.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Typhi str. M223]
gi|215487035|ref|YP_002329466.1| cold shock-like protein CspC [Escherichia coli O127:H6 str.
E2348/69]
gi|217328839|ref|ZP_03444920.1| cold shock protein CspC [Escherichia coli O157:H7 str. TW14588]
gi|218548618|ref|YP_002382409.1| cold shock-like protein CspC [Escherichia fergusonii ATCC 35469]
gi|218554396|ref|YP_002387309.1| cold shock-like protein CspC [Escherichia coli IAI1]
gi|218558685|ref|YP_002391598.1| cold shock-like protein CspC [Escherichia coli S88]
gi|218689759|ref|YP_002397971.1| cold shock-like protein CspC [Escherichia coli ED1a]
gi|218695386|ref|YP_002403053.1| cold shock-like protein CspC [Escherichia coli 55989]
gi|218699608|ref|YP_002407237.1| cold shock-like protein CspC [Escherichia coli IAI39]
gi|218705322|ref|YP_002412841.1| cold shock-like protein CspC [Escherichia coli UMN026]
gi|222156565|ref|YP_002556704.1| Cold shock-like protein cspC [Escherichia coli LF82]
gi|224583673|ref|YP_002637471.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|227885751|ref|ZP_04003556.1| cold shock family protein CspC [Escherichia coli 83972]
gi|237705773|ref|ZP_04536254.1| cold shock protein [Escherichia sp. 3_2_53FAA]
gi|237731860|ref|ZP_04562341.1| cold shock-like protein cspC [Citrobacter sp. 30_2]
gi|238895399|ref|YP_002920134.1| cold shock-like protein CspC [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gi|238901037|ref|YP_002926833.1| cold shock-like protein CspC [Escherichia coli BW2952]
gi|238912099|ref|ZP_04655936.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Tennessee str. CDC07-0191]
gi|251785270|ref|YP_002999574.1| stress protein, member of the CspA family; predicted DNA-binding
transcriptional regulator [Escherichia coli BL21(DE3)]
gi|253773223|ref|YP_003036054.1| cold shock-like protein CspC [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254161882|ref|YP_003044990.1| cold shock-like protein CspC [Escherichia coli B str. REL606]
gi|254288670|ref|YP_003054418.1| stress protein, member of the CspA-family [Escherichia coli
BL21(DE3)]
gi|254793446|ref|YP_003078283.1| cold shock-like protein CspC [Escherichia coli O157:H7 str.
TW14359]
gi|259908254|ref|YP_002648610.1| cold shock-like protein CspC [Erwinia pyrifoliae Ep1/96]
gi|260844168|ref|YP_003221946.1| stress protein CspC [Escherichia coli O103:H2 str. 12009]
gi|260855683|ref|YP_003229574.1| cold shock CspC [Escherichia coli O26:H11 str. 11368]
gi|260868343|ref|YP_003234745.1| stress protein CspC [Escherichia coli O111:H- str. 11128]
gi|261227680|ref|ZP_05941961.1| stress protein, member of the CspA-family [Escherichia coli
O157:H7 str. FRIK2000]
gi|261258154|ref|ZP_05950687.1| Cold shock-like protein cspC [Escherichia coli O157:H7 str.
FRIK966]
gi|261340207|ref|ZP_05968065.1| conserved domain protein [Enterobacter cancerogenus ATCC 35316]
gi|262041935|ref|ZP_06015118.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|283832781|ref|ZP_06352522.1| conserved domain protein [Citrobacter youngae ATCC 29220]
gi|288934716|ref|YP_003438775.1| cold-shock DNA-binding domain-containing protein [Klebsiella
variicola At-22]
gi|289804519|ref|ZP_06535148.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Typhi str. AG3]
gi|289825969|ref|ZP_06545128.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Typhi str. E98-3139]
gi|290508848|ref|ZP_06548219.1| cold shock protein CspG [Klebsiella sp. 1_1_55]
gi|291283004|ref|YP_003499822.1| hypothetical protein G2583_2272 [Escherichia coli O55:H7 str.
CB9615]
gi|292488490|ref|YP_003531374.1| cold shock-like protein CspC [Erwinia amylovora CFBP1430]
gi|292899677|ref|YP_003539046.1| cold shock-like protein [Erwinia amylovora ATCC 49946]
gi|293405319|ref|ZP_06649311.1| cold shock protein CspG [Escherichia coli FVEC1412]
gi|293410131|ref|ZP_06653707.1| cold shock protein cspC [Escherichia coli B354]
gi|293415138|ref|ZP_06657781.1| cold shock protein CspG [Escherichia coli B185]
gi|293446195|ref|ZP_06662617.1| cold shock protein CspG [Escherichia coli B088]
gi|296101843|ref|YP_003611989.1| cold-shock protein [Enterobacter cloacae subsp. cloacae ATCC
13047]
gi|298380961|ref|ZP_06990560.1| cold shock-like protein cspC [Escherichia coli FVEC1302]
gi|300717038|ref|YP_003741841.1| cold shock protein [Erwinia billingiae Eb661]
gi|300816289|ref|ZP_07096511.1| cold shock protein CspE [Escherichia coli MS 107-1]
gi|300825532|ref|ZP_07105593.1| cold shock protein CspE [Escherichia coli MS 119-7]
gi|300899064|ref|ZP_07117350.1| cold shock protein CspE [Escherichia coli MS 198-1]
gi|300904686|ref|ZP_07122520.1| cold shock protein CspE [Escherichia coli MS 84-1]
gi|300917606|ref|ZP_07134258.1| cold shock protein CspE [Escherichia coli MS 115-1]
gi|300924891|ref|ZP_07140823.1| cold shock protein CspE [Escherichia coli MS 182-1]
gi|300928850|ref|ZP_07144356.1| cold shock protein CspE [Escherichia coli MS 187-1]
gi|300938827|ref|ZP_07153537.1| cold shock protein CspE [Escherichia coli MS 21-1]
gi|300951435|ref|ZP_07165274.1| cold shock protein CspE [Escherichia coli MS 116-1]
gi|300956672|ref|ZP_07168948.1| cold shock protein CspE [Escherichia coli MS 175-1]
gi|300981990|ref|ZP_07175834.1| cold shock protein CspE [Escherichia coli MS 200-1]
gi|300994227|ref|ZP_07180784.1| cold shock protein CspE [Escherichia coli MS 45-1]
gi|301020113|ref|ZP_07184242.1| cold shock protein CspE [Escherichia coli MS 196-1]
gi|301026567|ref|ZP_07189993.1| cold shock protein CspE [Escherichia coli MS 69-1]
gi|301050830|ref|ZP_07197684.1| cold shock protein CspE [Escherichia coli MS 185-1]
gi|301305922|ref|ZP_07212005.1| cold shock protein CspE [Escherichia coli MS 124-1]
gi|301327584|ref|ZP_07220801.1| cold shock protein CspE [Escherichia coli MS 78-1]
gi|301645665|ref|ZP_07245593.1| cold shock protein CspE [Escherichia coli MS 146-1]
gi|306814930|ref|ZP_07449086.1| Cold shock-like protein cspC [Escherichia coli NC101]
gi|307314098|ref|ZP_07593710.1| cold-shock DNA-binding domain protein [Escherichia coli W]
gi|309788269|ref|ZP_07682873.1| cold shock-like protein cspI [Shigella dysenteriae 1617]
gi|309794201|ref|ZP_07688625.1| cold shock protein CspE [Escherichia coli MS 145-7]
gi|311279278|ref|YP_003941509.1| cold-shock DNA-binding domain-containing protein [Enterobacter
cloacae SCF1]
gi|312967022|ref|ZP_07781240.1| cold shock-like protein cspI [Escherichia coli 2362-75]
gi|312969860|ref|ZP_07784043.1| cold shock-like protein cspI [Escherichia coli 1827-70]
gi|317048459|ref|YP_004116107.1| cold-shock DNA-binding domain-containing protein [Pantoea sp.
At-9b]
gi|330002884|ref|ZP_08304436.1| cold shock-like protein CspE [Klebsiella sp. MS 92-3]
gi|331642433|ref|ZP_08343568.1| conserved domain protein [Escherichia coli H736]
gi|331647319|ref|ZP_08348413.1| conserved domain protein [Escherichia coli M605]
gi|331653228|ref|ZP_08354233.1| conserved domain protein [Escherichia coli M718]
gi|331657867|ref|ZP_08358829.1| conserved domain protein [Escherichia coli TA206]
gi|331663313|ref|ZP_08364223.1| conserved domain protein [Escherichia coli TA143]
gi|331668514|ref|ZP_08369362.1| conserved domain protein [Escherichia coli TA271]
gi|331673355|ref|ZP_08374123.1| conserved domain protein [Escherichia coli TA280]
gi|331677700|ref|ZP_08378375.1| conserved domain protein [Escherichia coli H591]
gi|331683325|ref|ZP_08383926.1| conserved domain protein [Escherichia coli H299]
gi|332279025|ref|ZP_08391438.1| cold shock protein [Shigella sp. D9]
gi|334124501|ref|ZP_08498506.1| CspA family transcriptional regulator [Enterobacter hormaechei
ATCC 49162]
gi|336250996|ref|YP_004594706.1| cold-shock protein [Enterobacter aerogenes KCTC 2190]
gi|339999664|ref|YP_004730547.1| cold shock-like protein CspC [Salmonella bongori NCTC 12419]
gi|345299688|ref|YP_004829046.1| cold-shock DNA-binding domain-containing protein [Enterobacter
asburiae LF7a]
gi|354724154|ref|ZP_09038369.1| Cold shock-like protein cspC [Enterobacter mori LMG 25706]
gi|365107538|ref|ZP_09335865.1| cold shock-like protein CspC [Citrobacter freundii 4_7_47CFAA]
gi|365137643|ref|ZP_09344357.1| cold shock-like protein CspC [Klebsiella sp. 4_1_44FAA]
gi|365849190|ref|ZP_09389661.1| cold shock-like protein CspE [Yokenella regensburgei ATCC 43003]
gi|366157832|ref|ZP_09457694.1| Cold shock-like protein cspC [Escherichia sp. TW09308]
gi|374980850|ref|ZP_09722180.1| Cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Typhimurium str. TN061786]
gi|375001022|ref|ZP_09725362.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Infantis str. SARB27]
gi|375114730|ref|ZP_09759900.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SCSA50]
gi|375123307|ref|ZP_09768471.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Gallinarum str. SG9]
gi|375261523|ref|YP_005020693.1| cold-shock protein [Klebsiella oxytoca KCTC 1686]
gi|377576158|ref|ZP_09805142.1| cold shock-like protein CspC [Escherichia hermannii NBRC 105704]
gi|378445243|ref|YP_005232875.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|378450420|ref|YP_005237779.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Typhimurium str. 14028S]
gi|378579887|ref|ZP_09828548.1| stress protein, member of the CspA-family [Pantoea stewartii
subsp. stewartii DC283]
gi|378699713|ref|YP_005181670.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|378712737|ref|YP_005277630.1| cold-shock protein [Escherichia coli KO11FL]
gi|378766986|ref|YP_005195451.1| cold shock-like protein CspC [Pantoea ananatis LMG 5342]
gi|378955343|ref|YP_005212830.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Gallinarum/pullorum str. RKS5078]
gi|378959198|ref|YP_005216684.1| cold-shock protein [Salmonella enterica subsp. enterica serovar
Typhi str. P-stx-12]
gi|378979513|ref|YP_005227654.1| cold-shock protein [Klebsiella pneumoniae subsp. pneumoniae
HS11286]
gi|378984398|ref|YP_005247553.1| cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|378989177|ref|YP_005252341.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Typhimurium str. UK-1]
gi|379701013|ref|YP_005242741.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Typhimurium str. ST4/74]
gi|383178001|ref|YP_005456006.1| cold-shock protein [Shigella sonnei 53G]
gi|383496525|ref|YP_005397214.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Typhimurium str. 798]
gi|384543037|ref|YP_005727099.1| cold-shock protein [Shigella flexneri 2002017]
gi|385788557|ref|YP_005819666.1| cold-shock protein [Erwinia sp. Ejp617]
gi|386035476|ref|YP_005955389.1| cold-shock protein [Klebsiella pneumoniae KCTC 2242]
gi|386079155|ref|YP_005992680.1| cold-shock protein [Pantoea ananatis PA13]
gi|386280884|ref|ZP_10058548.1| cold shock-like protein CspC [Escherichia sp. 4_1_40B]
gi|386591666|ref|YP_006088066.1| Cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Heidelberg str. B182]
gi|386595367|ref|YP_006091767.1| cold-shock protein [Escherichia coli DH1]
gi|386599619|ref|YP_006101125.1| cold shock protein CspC [Escherichia coli IHE3034]
gi|386604214|ref|YP_006110514.1| cold-shock protein [Escherichia coli UM146]
gi|386609209|ref|YP_006124695.1| stress protein, member of the CspA-family [Escherichia coli W]
gi|386614379|ref|YP_006134045.1| cold shock-like protein CspI [Escherichia coli UMNK88]
gi|386619390|ref|YP_006138970.1| Cold shock protein [Escherichia coli NA114]
gi|386624449|ref|YP_006144177.1| stress protein, member of the CspA-family [Escherichia coli O7:K1
str. CE10]
gi|386629521|ref|YP_006149241.1| cold shock-like protein CspC [Escherichia coli str. 'clone D i2']
gi|386634441|ref|YP_006154160.1| cold shock-like protein CspC [Escherichia coli str. 'clone D
i14']
gi|386639349|ref|YP_006106147.1| cold shock-like protein CspC [Escherichia coli ABU 83972]
gi|386701208|ref|YP_006165045.1| cold shock-like protein cspc [Escherichia coli KO11FL]
gi|386709682|ref|YP_006173403.1| cold shock-like protein cspc [Escherichia coli W]
gi|387507069|ref|YP_006159325.1| cold-shock protein [Escherichia coli O55:H7 str. RM12579]
gi|387607442|ref|YP_006096298.1| cold shock-like protein CspC [Escherichia coli 042]
gi|387617158|ref|YP_006120180.1| cold shock-like protein CspC [Escherichia coli O83:H1 str. NRG
857C]
gi|387621542|ref|YP_006129169.1| cold shock-like protein cspC [Escherichia coli DH1]
gi|387829732|ref|YP_003349669.1| cold shock protein [Escherichia coli SE15]
gi|387871099|ref|YP_005802472.1| cold shock-like protein cspC (CSP-C) [Erwinia pyrifoliae DSM
12163]
gi|387882930|ref|YP_006313232.1| cold shock-like protein CspC [Escherichia coli Xuzhou21]
gi|387889058|ref|YP_006319356.1| cold shock protein [Escherichia blattae DSM 4481]
gi|388477896|ref|YP_490084.1| stress protein, member of the CspA-family [Escherichia coli str.
K-12 substr. W3110]
gi|392979590|ref|YP_006478178.1| cold-shock protein [Enterobacter cloacae subsp. dissolvens SDM]
gi|395229782|ref|ZP_10408093.1| cold shock-like protein CspC [Citrobacter sp. A1]
gi|395232355|ref|ZP_10410606.1| Cold shock-like protein cspC [Enterobacter sp. Ag1]
gi|397165214|ref|ZP_10488667.1| cold shock-like protein CspC [Enterobacter radicincitans DSM
16656]
gi|397658628|ref|YP_006499330.1| Cold shock protein CspC [Klebsiella oxytoca E718]
gi|401675935|ref|ZP_10807922.1| CspC Protein [Enterobacter sp. SST3]
gi|401764165|ref|YP_006579172.1| cold-shock protein [Enterobacter cloacae subsp. cloacae ENHKU01]
gi|402780150|ref|YP_006635696.1| cold shock protein CspC [Klebsiella pneumoniae subsp. pneumoniae
1084]
gi|402840524|ref|ZP_10888988.1| cold shock-like protein CspI [Klebsiella sp. OBRC7]
gi|404375184|ref|ZP_10980372.1| cold shock-like protein CspC [Escherichia sp. 1_1_43]
gi|407469623|ref|YP_006783934.1| cold-shock protein [Escherichia coli O104:H4 str. 2009EL-2071]
gi|407481713|ref|YP_006778862.1| cold-shock protein [Escherichia coli O104:H4 str. 2011C-3493]
gi|409249828|ref|YP_006885643.1| Cold shock-like protein cspE CSP-E [Salmonella enterica subsp.
enterica serovar Weltevreden str. 2007-60-3289-1]
gi|410482262|ref|YP_006769808.1| cold-shock protein [Escherichia coli O104:H4 str. 2009EL-2050]
gi|414575624|ref|ZP_11432824.1| cold shock-like protein CspC [Shigella sonnei 3233-85]
gi|414595721|ref|ZP_11445335.1| cold shock-like protein CspC [Escherichia blattae NBRC 105725]
gi|415791606|ref|ZP_11495378.1| cold shock-like protein cspI [Escherichia coli EPECa14]
gi|415809130|ref|ZP_11501931.1| cold shock-like protein cspI [Escherichia coli LT-68]
gi|415817979|ref|ZP_11507895.1| cold shock-like protein cspI [Escherichia coli OK1180]
gi|415825924|ref|ZP_11513280.1| cold shock-like protein cspI [Escherichia coli OK1357]
gi|415842414|ref|ZP_11523088.1| cold shock-like protein cspI [Escherichia coli RN587/1]
gi|415856310|ref|ZP_11531296.1| cold shock-like protein cspI [Shigella flexneri 2a str. 2457T]
gi|415861263|ref|ZP_11534929.1| cold shock protein CspE [Escherichia coli MS 85-1]
gi|415873613|ref|ZP_11540833.1| hypothetical protein HMPREF9439_00538 [Escherichia coli MS 79-10]
gi|416275489|ref|ZP_11643963.1| Cold shock protein CspC [Shigella dysenteriae CDC 74-1112]
gi|416281607|ref|ZP_11645915.1| Cold shock protein CspC [Shigella boydii ATCC 9905]
gi|416299278|ref|ZP_11652296.1| Cold shock protein CspC [Shigella flexneri CDC 796-83]
gi|416312334|ref|ZP_11657535.1| Cold shock protein CspC [Escherichia coli O157:H7 str. 1044]
gi|416323049|ref|ZP_11664658.1| Cold shock protein CspC [Escherichia coli O157:H7 str. EC1212]
gi|416327304|ref|ZP_11667311.1| Cold shock protein CspC [Escherichia coli O157:H7 str. 1125]
gi|416337572|ref|ZP_11673935.1| Cold shock protein CspC [Escherichia coli WV_060327]
gi|416346845|ref|ZP_11679936.1| Cold shock protein CspC [Escherichia coli EC4100B]
gi|416421594|ref|ZP_11689592.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. 315996572]
gi|416433669|ref|ZP_11697092.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-1]
gi|416436490|ref|ZP_11698292.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-3]
gi|416448950|ref|ZP_11706601.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-4]
gi|416451118|ref|ZP_11708011.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-1]
gi|416456440|ref|ZP_11711444.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-2]
gi|416468948|ref|ZP_11718242.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. 531954]
gi|416481659|ref|ZP_11723393.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. NC_MB110209-0054]
gi|416491763|ref|ZP_11727274.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. OH_2009072675]
gi|416498103|ref|ZP_11730029.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. CASC_09SCPH15965]
gi|416504743|ref|ZP_11733325.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB31]
gi|416512089|ref|ZP_11737633.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. ATCC BAA710]
gi|416528071|ref|ZP_11743670.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. LQC 10]
gi|416535213|ref|ZP_11747577.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB30]
gi|416541692|ref|ZP_11751124.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. 19N]
gi|416550321|ref|ZP_11755904.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. 29N]
gi|416562541|ref|ZP_11762241.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. 42N]
gi|416570790|ref|ZP_11766285.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. 4441 H]
gi|416579239|ref|ZP_11771097.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. 81038-01]
gi|416585109|ref|ZP_11774662.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. MD_MDA09249507]
gi|416590003|ref|ZP_11777519.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. 414877]
gi|416601168|ref|ZP_11784832.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. 366867]
gi|416604421|ref|ZP_11786181.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. 413180]
gi|416612096|ref|ZP_11791275.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. 446600]
gi|416619436|ref|ZP_11795098.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. 609458-1]
gi|416629413|ref|ZP_11800077.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. 556150-1]
gi|416640128|ref|ZP_11804890.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. 609460]
gi|416651652|ref|ZP_11811169.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. 507440-20]
gi|416654838|ref|ZP_11812342.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. 556152]
gi|416666361|ref|ZP_11817435.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. MB101509-0077]
gi|416673467|ref|ZP_11820896.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. MB102109-0047]
gi|416698512|ref|ZP_11828443.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. MB110209-0055]
gi|416704950|ref|ZP_11830562.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. MB111609-0052]
gi|416710936|ref|ZP_11834894.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009083312]
gi|416716803|ref|ZP_11839095.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009085258]
gi|416721939|ref|ZP_11842998.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. 315731156]
gi|416733520|ref|ZP_11850518.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2009159199]
gi|416737327|ref|ZP_11852559.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008282]
gi|416745150|ref|ZP_11857098.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008283]
gi|416759962|ref|ZP_11864715.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008284]
gi|416762238|ref|ZP_11866234.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008285]
gi|416771606|ref|ZP_11872841.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008287]
gi|416773908|ref|ZP_11873902.1| cold shock-like protein cspc [Escherichia coli O157:H7 str.
G5101]
gi|416785910|ref|ZP_11878806.1| cold shock-like protein cspc [Escherichia coli O157:H- str.
493-89]
gi|416796889|ref|ZP_11883723.1| cold shock-like protein cspc [Escherichia coli O157:H- str. H
2687]
gi|416808334|ref|ZP_11888379.1| cold shock-like protein cspc [Escherichia coli O55:H7 str.
3256-97]
gi|416827588|ref|ZP_11897604.1| cold shock-like protein cspc [Escherichia coli O55:H7 str. USDA
5905]
gi|416828968|ref|ZP_11898262.1| cold shock-like protein cspc [Escherichia coli O157:H7 str.
LSU-61]
gi|416897742|ref|ZP_11927390.1| cold shock-like protein cspI [Escherichia coli STEC_7v]
gi|417084761|ref|ZP_11952400.1| cold shock-like protein cspc [Escherichia coli cloneA_i1]
gi|417115692|ref|ZP_11966828.1| cold shock-like protein CspE [Escherichia coli 1.2741]
gi|417121302|ref|ZP_11970730.1| cold shock-like protein CspE [Escherichia coli 97.0246]
gi|417134311|ref|ZP_11979096.1| cold shock-like protein CspE [Escherichia coli 5.0588]
gi|417138187|ref|ZP_11981920.1| cold shock-like protein CspE [Escherichia coli 97.0259]
gi|417149967|ref|ZP_11989885.1| cold shock-like protein CspE [Escherichia coli 1.2264]
gi|417154561|ref|ZP_11992690.1| cold shock-like protein CspE [Escherichia coli 96.0497]
gi|417168009|ref|ZP_12000631.1| cold shock-like protein CspE [Escherichia coli 99.0741]
gi|417172719|ref|ZP_12002752.1| cold shock-like protein CspE [Escherichia coli 3.2608]
gi|417187738|ref|ZP_12012404.1| cold shock-like protein CspE [Escherichia coli 93.0624]
gi|417195497|ref|ZP_12015911.1| cold shock-like protein CspE [Escherichia coli 4.0522]
gi|417213114|ref|ZP_12022476.1| cold shock-like protein CspE [Escherichia coli JB1-95]
gi|417220964|ref|ZP_12024404.1| cold shock-like protein CspE [Escherichia coli 96.154]
gi|417231287|ref|ZP_12032685.1| cold shock-like protein CspE [Escherichia coli 5.0959]
gi|417247687|ref|ZP_12040443.1| cold shock-like protein CspE [Escherichia coli 9.0111]
gi|417252097|ref|ZP_12043860.1| cold shock-like protein CspE [Escherichia coli 4.0967]
gi|417261653|ref|ZP_12049141.1| cold shock-like protein CspE [Escherichia coli 2.3916]
gi|417266147|ref|ZP_12053516.1| cold shock-like protein CspE [Escherichia coli 3.3884]
gi|417272713|ref|ZP_12060062.1| cold shock-like protein CspE [Escherichia coli 2.4168]
gi|417276761|ref|ZP_12064087.1| cold shock-like protein CspE [Escherichia coli 3.2303]
gi|417283886|ref|ZP_12071183.1| cold shock-like protein CspE [Escherichia coli 3003]
gi|417291458|ref|ZP_12078739.1| cold shock-like protein CspE [Escherichia coli B41]
gi|417298656|ref|ZP_12085894.1| cold shock-like protein CspE [Escherichia coli 900105 (10e)]
gi|417308287|ref|ZP_12095140.1| Cold shock-like protein CspC [Escherichia coli PCN033]
gi|417325889|ref|ZP_12111733.1| Cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Adelaide str. A4-669]
gi|417333264|ref|ZP_12116879.1| Cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Alachua str. R6-377]
gi|417341318|ref|ZP_12122413.1| Cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Baildon str. R6-199]
gi|417348628|ref|ZP_12127532.1| Cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Gaminara str. A4-567]
gi|417357601|ref|ZP_12132702.1| Cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Give str. S5-487]
gi|417365291|ref|ZP_12137981.1| Cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Hvittingfoss str. A4-620]
gi|417372872|ref|ZP_12143058.1| Cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Inverness str. R8-3668]
gi|417378959|ref|ZP_12147460.1| Cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Johannesburg str. S5-703]
gi|417390475|ref|ZP_12153958.1| Cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Minnesota str. A4-603]
gi|417415119|ref|ZP_12158867.1| Cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Mississippi str. A4-633]
gi|417458027|ref|ZP_12163934.1| Cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Montevideo str. S5-403]
gi|417474656|ref|ZP_12169690.1| Cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Rubislaw str. A4-653]
gi|417510266|ref|ZP_12175224.1| Cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Senftenberg str. A4-543]
gi|417517908|ref|ZP_12180387.1| Cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Uganda str. R8-3404]
gi|417530129|ref|ZP_12185541.1| Cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Urbana str. R8-2977]
gi|417538808|ref|ZP_12191287.1| Cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Wandsworth str. A4-580]
gi|417581299|ref|ZP_12232104.1| cold shock-like protein cspI [Escherichia coli STEC_B2F1]
gi|417586699|ref|ZP_12237471.1| cold shock-like protein cspI [Escherichia coli STEC_C165-02]
gi|417596951|ref|ZP_12247599.1| cold shock-like protein cspI [Escherichia coli 3030-1]
gi|417602414|ref|ZP_12252984.1| cold shock-like protein cspI [Escherichia coli STEC_94C]
gi|417608390|ref|ZP_12258896.1| cold shock-like protein cspI [Escherichia coli STEC_DG131-3]
gi|417613243|ref|ZP_12263704.1| cold shock-like protein cspI [Escherichia coli STEC_EH250]
gi|417618381|ref|ZP_12268801.1| cold shock-like protein cspI [Escherichia coli G58-1]
gi|417623555|ref|ZP_12273860.1| cold shock-like protein cspI [Escherichia coli STEC_H.1.8]
gi|417628995|ref|ZP_12279235.1| cold shock-like protein cspI [Escherichia coli STEC_MHI813]
gi|417634738|ref|ZP_12284952.1| cold shock-like protein cspI [Escherichia coli STEC_S1191]
gi|417639358|ref|ZP_12289508.1| cold shock-like protein cspI [Escherichia coli TX1999]
gi|417662412|ref|ZP_12311993.1| cold shock protein CspC [Escherichia coli AA86]
gi|417667210|ref|ZP_12316758.1| cold shock-like protein cspI [Escherichia coli STEC_O31]
gi|417672308|ref|ZP_12321779.1| cold shock-like protein cspI [Shigella dysenteriae 155-74]
gi|417681619|ref|ZP_12330993.1| cold shock-like protein cspI [Shigella boydii 3594-74]
gi|417689806|ref|ZP_12339034.1| cold shock-like protein cspI [Shigella boydii 5216-82]
gi|417702046|ref|ZP_12351167.1| cold shock-like protein cspI [Shigella flexneri K-218]
gi|417707482|ref|ZP_12356527.1| cold shock-like protein cspI [Shigella flexneri VA-6]
gi|417712323|ref|ZP_12361312.1| cold shock-like protein cspI [Shigella flexneri K-272]
gi|417717007|ref|ZP_12365925.1| cold shock-like protein cspI [Shigella flexneri K-227]
gi|417722927|ref|ZP_12371745.1| cold shock-like protein cspI [Shigella flexneri K-304]
gi|417727336|ref|ZP_12376075.1| cold shock-like protein cspI [Shigella flexneri K-671]
gi|417732480|ref|ZP_12381149.1| cold shock-like protein cspI [Shigella flexneri 2747-71]
gi|417736703|ref|ZP_12385317.1| cold shock-like protein cspI [Shigella flexneri 4343-70]
gi|417743050|ref|ZP_12391591.1| cold shock protein [Shigella flexneri 2930-71]
gi|417755866|ref|ZP_12403950.1| cold shock-like protein CspC [Escherichia coli DEC2B]
gi|417805336|ref|ZP_12452292.1| Cold shock-like protein cspC [Escherichia coli O104:H4 str.
LB226692]
gi|417827718|ref|ZP_12474281.1| cold shock protein [Shigella flexneri J1713]
gi|417833060|ref|ZP_12479508.1| Cold shock-like protein cspC [Escherichia coli O104:H4 str.
01-09591]
gi|417865300|ref|ZP_12510344.1| cspC [Escherichia coli O104:H4 str. C227-11]
gi|417943496|ref|ZP_12586744.1| Cold shock-like protein cspC [Escherichia coli XH140A]
gi|417974918|ref|ZP_12615719.1| Cold shock-like protein cspC [Escherichia coli XH001]
gi|418255628|ref|ZP_12879909.1| cold shock protein CspC [Shigella flexneri 6603-63]
gi|418264606|ref|ZP_12884921.1| cold shock protein CspC [Shigella sonnei str. Moseley]
gi|418303091|ref|ZP_12914885.1| cold shock-like protein cspI (CPS-I) [Escherichia coli UMNF18]
gi|418484143|ref|ZP_13053147.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. 80959-06]
gi|418486657|ref|ZP_13055607.1| cold shock-like protein cspc [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035278]
gi|418493675|ref|ZP_13060137.1| cold shock-like protein cspc [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035318]
gi|418497662|ref|ZP_13064079.1| cold shock-like protein cspc [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035320]
gi|418502394|ref|ZP_13068766.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035321]
gi|418509447|ref|ZP_13075741.1| cold shock-like protein cspc [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035327]
gi|418513389|ref|ZP_13079620.1| cold shock-like protein cspc [Salmonella enterica subsp. enterica
serovar Pomona str. ATCC 10729]
gi|418527665|ref|ZP_13093621.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008286]
gi|418762937|ref|ZP_13319062.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35185]
gi|418765805|ref|ZP_13321886.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35199]
gi|418772514|ref|ZP_13328518.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21539]
gi|418777442|ref|ZP_13333371.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Newport str. CVM 33953]
gi|418778965|ref|ZP_13334872.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35188]
gi|418785912|ref|ZP_13341738.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21559]
gi|418789140|ref|ZP_13344928.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19447]
gi|418794641|ref|ZP_13350359.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19449]
gi|418797026|ref|ZP_13352717.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19567]
gi|418802227|ref|ZP_13357855.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35202]
gi|418809372|ref|ZP_13364924.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21550]
gi|418813527|ref|ZP_13369048.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22513]
gi|418817839|ref|ZP_13373323.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21538]
gi|418820749|ref|ZP_13376181.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22425]
gi|418828576|ref|ZP_13383604.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22462]
gi|418833534|ref|ZP_13388457.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Newport str. CVM N18486]
gi|418836750|ref|ZP_13391634.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Newport str. CVM N1543]
gi|418840475|ref|ZP_13395304.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21554]
gi|418845075|ref|ZP_13399861.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19443]
gi|418850511|ref|ZP_13405227.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Newport str. CVM 37978]
gi|418852369|ref|ZP_13407071.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19593]
gi|418859968|ref|ZP_13414555.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19470]
gi|418863404|ref|ZP_13417942.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19536]
gi|418867020|ref|ZP_13421481.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Newport str. CVM 4176]
gi|418941086|ref|ZP_13494425.1| Cold shock-like protein cspC [Escherichia coli O157:H43 str. T22]
gi|418957812|ref|ZP_13509735.1| Cold shock-like protein cspC [Escherichia coli J53]
gi|418996736|ref|ZP_13544336.1| cold shock protein CspC [Escherichia coli DEC1A]
gi|419002217|ref|ZP_13549754.1| cold shock protein CspC [Escherichia coli DEC1B]
gi|419007873|ref|ZP_13555313.1| cold shock protein CspC [Escherichia coli DEC1C]
gi|419013655|ref|ZP_13561010.1| cold shock-like protein CspC [Escherichia coli DEC1D]
gi|419018482|ref|ZP_13565793.1| cold shock protein CspC [Escherichia coli DEC1E]
gi|419024126|ref|ZP_13571357.1| cold shock-like protein CspC [Escherichia coli DEC2A]
gi|419029174|ref|ZP_13576346.1| cold shock protein CspC [Escherichia coli DEC2C]
gi|419034665|ref|ZP_13581756.1| cold shock protein CspC [Escherichia coli DEC2D]
gi|419039770|ref|ZP_13586811.1| cold shock protein CspC [Escherichia coli DEC2E]
gi|419045386|ref|ZP_13592332.1| cold shock protein CspC [Escherichia coli DEC3A]
gi|419051359|ref|ZP_13598240.1| cold shock protein CspC [Escherichia coli DEC3B]
gi|419057359|ref|ZP_13604174.1| cold shock protein CspC [Escherichia coli DEC3C]
gi|419062738|ref|ZP_13609477.1| cold shock protein CspC [Escherichia coli DEC3D]
gi|419069641|ref|ZP_13615277.1| cold shock protein CspC [Escherichia coli DEC3E]
gi|419075511|ref|ZP_13621043.1| cold shock protein CspC [Escherichia coli DEC3F]
gi|419080875|ref|ZP_13626332.1| cold shock protein CspC [Escherichia coli DEC4A]
gi|419086509|ref|ZP_13631879.1| cold shock protein CspC [Escherichia coli DEC4B]
gi|419092674|ref|ZP_13637967.1| cold shock protein CspC [Escherichia coli DEC4C]
gi|419098194|ref|ZP_13643407.1| cold shock protein CspC [Escherichia coli DEC4D]
gi|419104133|ref|ZP_13649274.1| cold shock protein CspC [Escherichia coli DEC4E]
gi|419109685|ref|ZP_13654752.1| cold shock protein CspC [Escherichia coli DEC4F]
gi|419114964|ref|ZP_13659986.1| cold shock protein CspC [Escherichia coli DEC5A]
gi|419120640|ref|ZP_13665606.1| cold shock protein CspC [Escherichia coli DEC5B]
gi|419131758|ref|ZP_13676599.1| cold shock protein CspC [Escherichia coli DEC5D]
gi|419136584|ref|ZP_13681385.1| cold shock-like protein CspC [Escherichia coli DEC5E]
gi|419142523|ref|ZP_13687270.1| cold shock-like protein CspC [Escherichia coli DEC6A]
gi|419148447|ref|ZP_13693120.1| cold shock protein CspC [Escherichia coli DEC6B]
gi|419154014|ref|ZP_13698582.1| cold shock-like protein CspC [Escherichia coli DEC6C]
gi|419159322|ref|ZP_13703831.1| cold shock-like protein CspC [Escherichia coli DEC6D]
gi|419164543|ref|ZP_13709000.1| cold shock protein CspC [Escherichia coli DEC6E]
gi|419170381|ref|ZP_13714271.1| cold shock-like protein CspC [Escherichia coli DEC7A]
gi|419175332|ref|ZP_13719177.1| cold shock protein CspC [Escherichia coli DEC7B]
gi|419181030|ref|ZP_13724647.1| cold shock protein CspC [Escherichia coli DEC7C]
gi|419186466|ref|ZP_13729983.1| cold shock protein CspC [Escherichia coli DEC7D]
gi|419191751|ref|ZP_13735211.1| cold shock-like protein CspC [Escherichia coli DEC7E]
gi|419197207|ref|ZP_13740600.1| cold shock-like protein CspC [Escherichia coli DEC8A]
gi|419203343|ref|ZP_13746542.1| cold shock protein CspC [Escherichia coli DEC8B]
gi|419209686|ref|ZP_13752776.1| cold shock protein CspC [Escherichia coli DEC8C]
gi|419215719|ref|ZP_13758726.1| cold shock protein CspC [Escherichia coli DEC8D]
gi|419221568|ref|ZP_13764499.1| cold shock protein CspC [Escherichia coli DEC8E]
gi|419226898|ref|ZP_13769763.1| cold shock protein CspC [Escherichia coli DEC9A]
gi|419232509|ref|ZP_13775290.1| cold shock protein CspC [Escherichia coli DEC9B]
gi|419238021|ref|ZP_13780746.1| cold shock protein CspC [Escherichia coli DEC9C]
gi|419243459|ref|ZP_13786100.1| cold shock protein CspC [Escherichia coli DEC9D]
gi|419249282|ref|ZP_13791871.1| cold shock protein CspC [Escherichia coli DEC9E]
gi|419255036|ref|ZP_13797559.1| cold shock protein CspC [Escherichia coli DEC10A]
gi|419261242|ref|ZP_13803670.1| cold shock protein CspC [Escherichia coli DEC10B]
gi|419267101|ref|ZP_13809462.1| cold shock protein CspC [Escherichia coli DEC10C]
gi|419272751|ref|ZP_13815053.1| cold shock protein CspC [Escherichia coli DEC10D]
gi|419278199|ref|ZP_13820453.1| cold shock protein CspC [Escherichia coli DEC10E]
gi|419284173|ref|ZP_13826357.1| cold shock protein CspC [Escherichia coli DEC10F]
gi|419289716|ref|ZP_13831811.1| cold shock protein CspC [Escherichia coli DEC11A]
gi|419295050|ref|ZP_13837096.1| cold shock protein CspC [Escherichia coli DEC11B]
gi|419300369|ref|ZP_13842370.1| cold shock-like protein CspC [Escherichia coli DEC11C]
gi|419306465|ref|ZP_13848369.1| cold shock-like protein CspC [Escherichia coli DEC11D]
gi|419311490|ref|ZP_13853357.1| cold shock-like protein CspC [Escherichia coli DEC11E]
gi|419316847|ref|ZP_13858659.1| cold shock-like protein CspC [Escherichia coli DEC12A]
gi|419322976|ref|ZP_13864682.1| cold shock protein CspC [Escherichia coli DEC12B]
gi|419328967|ref|ZP_13870582.1| cold shock-like protein CspC [Escherichia coli DEC12C]
gi|419334516|ref|ZP_13876060.1| cold shock protein CspC [Escherichia coli DEC12D]
gi|419340082|ref|ZP_13881557.1| cold shock protein CspC [Escherichia coli DEC12E]
gi|419345439|ref|ZP_13886817.1| cold shock protein CspC [Escherichia coli DEC13A]
gi|419349858|ref|ZP_13891202.1| cold shock protein CspC [Escherichia coli DEC13B]
gi|419355255|ref|ZP_13896517.1| cold shock protein CspC [Escherichia coli DEC13C]
gi|419360280|ref|ZP_13901501.1| cold shock protein CspC [Escherichia coli DEC13D]
gi|419365389|ref|ZP_13906555.1| cold shock protein CspC [Escherichia coli DEC13E]
gi|419370226|ref|ZP_13911347.1| cold shock-like protein CspC [Escherichia coli DEC14A]
gi|419375696|ref|ZP_13916725.1| cold shock protein CspC [Escherichia coli DEC14B]
gi|419381012|ref|ZP_13921968.1| cold shock protein CspC [Escherichia coli DEC14C]
gi|419386285|ref|ZP_13927166.1| cold shock protein CspC [Escherichia coli DEC14D]
gi|419391739|ref|ZP_13932554.1| cold shock protein CspC [Escherichia coli DEC15A]
gi|419396808|ref|ZP_13937578.1| cold shock protein CspC [Escherichia coli DEC15B]
gi|419402143|ref|ZP_13942868.1| cold shock protein CspC [Escherichia coli DEC15C]
gi|419407286|ref|ZP_13947977.1| cold shock protein CspC [Escherichia coli DEC15D]
gi|419412822|ref|ZP_13953478.1| cold shock protein CspC [Escherichia coli DEC15E]
gi|419700614|ref|ZP_14228220.1| Cold shock-like protein cspC [Escherichia coli SCI-07]
gi|419730507|ref|ZP_14257453.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41579]
gi|419732193|ref|ZP_14259099.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41563]
gi|419739086|ref|ZP_14265840.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41573]
gi|419743826|ref|ZP_14270489.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41566]
gi|419750201|ref|ZP_14276667.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41565]
gi|419788314|ref|ZP_14314005.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Newport str. Levine 1]
gi|419793700|ref|ZP_14319318.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Newport str. Levine 15]
gi|419806911|ref|ZP_14331997.1| Cold shock-like protein cspC [Escherichia coli AI27]
gi|419808915|ref|ZP_14333801.1| Cold shock-like protein cspC [Escherichia coli O32:H37 str. P4]
gi|419865530|ref|ZP_14387912.1| Cold shock-like protein cspC [Escherichia coli O103:H25 str.
CVM9340]
gi|419869458|ref|ZP_14391662.1| Cold shock-like protein cspC [Escherichia coli O103:H2 str.
CVM9450]
gi|419878055|ref|ZP_14399534.1| Cold shock-like protein cspC [Escherichia coli O111:H11 str.
CVM9534]
gi|419884294|ref|ZP_14405270.1| Cold shock-like protein cspC [Escherichia coli O111:H11 str.
CVM9545]
gi|419887821|ref|ZP_14408373.1| Cold shock-like protein cspC [Escherichia coli O111:H8 str.
CVM9570]
gi|419897155|ref|ZP_14416748.1| Cold shock-like protein cspC [Escherichia coli O111:H8 str.
CVM9574]
gi|419903136|ref|ZP_14422251.1| Cold shock-like protein cspC [Escherichia coli O26:H11 str.
CVM9942]
gi|419909243|ref|ZP_14427855.1| Cold shock-like protein cspC [Escherichia coli O26:H11 str.
CVM10026]
gi|419914034|ref|ZP_14432441.1| Cold shock-like protein cspC [Escherichia coli KD1]
gi|419916453|ref|ZP_14434760.1| Cold shock-like protein cspC [Escherichia coli KD2]
gi|419923606|ref|ZP_14441543.1| Cold shock-like protein cspC [Escherichia coli 541-15]
gi|419930524|ref|ZP_14448123.1| Cold shock-like protein cspC [Escherichia coli 541-1]
gi|419932377|ref|ZP_14449693.1| Cold shock-like protein cspC [Escherichia coli 576-1]
gi|419941916|ref|ZP_14458568.1| Cold shock-like protein cspC [Escherichia coli 75]
gi|419946647|ref|ZP_14463039.1| Cold shock-like protein cspC [Escherichia coli HM605]
gi|419950106|ref|ZP_14466327.1| Cold shock-like protein cspC [Escherichia coli CUMT8]
gi|419958514|ref|ZP_14474578.1| Cold shock-like protein cspC [Enterobacter cloacae subsp. cloacae
GS1]
gi|419973879|ref|ZP_14489301.1| Cold shock-like protein cspC [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|419979271|ref|ZP_14494563.1| Cold shock-like protein cspC [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|419985175|ref|ZP_14500317.1| Cold shock-like protein cspC [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|419990501|ref|ZP_14505472.1| Cold shock-like protein cspC [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|419998868|ref|ZP_14513650.1| Cold shock-like protein cspC [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|420002737|ref|ZP_14517387.1| Cold shock-like protein cspC [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|420009299|ref|ZP_14523783.1| Cold shock-like protein cspC [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|420014835|ref|ZP_14529139.1| Cold shock-like protein cspC [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|420020028|ref|ZP_14534218.1| Cold shock-like protein cspC [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|420025687|ref|ZP_14539694.1| Cold shock-like protein cspC [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|420030408|ref|ZP_14544234.1| Cold shock-like protein cspC [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
gi|420036430|ref|ZP_14550090.1| Cold shock-like protein cspC [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|420043034|ref|ZP_14556524.1| Cold shock-like protein cspC [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|420048969|ref|ZP_14562280.1| Cold shock-like protein cspC [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|420053828|ref|ZP_14567004.1| Cold shock-like protein cspC [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|420059362|ref|ZP_14572370.1| Cold shock-like protein cspC [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|420065925|ref|ZP_14578728.1| Cold shock-like protein cspC [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|420072836|ref|ZP_14585470.1| Cold shock-like protein cspC [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|420076492|ref|ZP_14588963.1| Cold shock-like protein cspC [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|420082058|ref|ZP_14594360.1| Cold shock-like protein cspC [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|420091419|ref|ZP_14603166.1| Cold shock-like protein cspC [Escherichia coli O111:H8 str.
CVM9602]
gi|420093798|ref|ZP_14605433.1| Cold shock-like protein cspC [Escherichia coli O111:H8 str.
CVM9634]
gi|420104224|ref|ZP_14614960.1| Cold shock-like protein cspC [Escherichia coli O111:H11 str.
CVM9455]
gi|420109082|ref|ZP_14619270.1| Cold shock-like protein cspC [Escherichia coli O111:H11 str.
CVM9553]
gi|420117127|ref|ZP_14626494.1| Cold shock-like protein cspC [Escherichia coli O26:H11 str.
CVM10021]
gi|420121905|ref|ZP_14630948.1| Cold shock-like protein cspC [Escherichia coli O26:H11 str.
CVM10030]
gi|420129132|ref|ZP_14637672.1| Cold shock-like protein cspC [Escherichia coli O26:H11 str.
CVM10224]
gi|420134095|ref|ZP_14642242.1| Cold shock-like protein cspC [Escherichia coli O26:H11 str.
CVM9952]
gi|420269577|ref|ZP_14771950.1| cold shock-like protein cspC [Escherichia coli PA22]
gi|420275585|ref|ZP_14777886.1| cold shock-like protein cspC [Escherichia coli PA40]
gi|420280808|ref|ZP_14783055.1| cold shock-like protein cspC [Escherichia coli TW06591]
gi|420286779|ref|ZP_14788976.1| cold shock-like protein cspC [Escherichia coli TW10246]
gi|420292567|ref|ZP_14794699.1| cold shock-like protein cspC [Escherichia coli TW11039]
gi|420298353|ref|ZP_14800416.1| cold shock-like protein cspC [Escherichia coli TW09109]
gi|420304399|ref|ZP_14806406.1| cold shock-like protein cspC [Escherichia coli TW10119]
gi|420309960|ref|ZP_14811904.1| cold shock-like protein cspC [Escherichia coli EC1738]
gi|420315056|ref|ZP_14816939.1| cold shock-like protein cspC [Escherichia coli EC1734]
gi|420320082|ref|ZP_14821920.1| cold shock-like protein CspC [Shigella flexneri 2850-71]
gi|420325215|ref|ZP_14826983.1| cold shock-like protein CspC [Shigella flexneri CCH060]
gi|420330966|ref|ZP_14832642.1| cold shock-like protein CspC [Shigella flexneri K-1770]
gi|420335832|ref|ZP_14837432.1| cold shock-like protein CspC [Shigella flexneri K-315]
gi|420341484|ref|ZP_14842985.1| cold shock-like protein CspC [Shigella flexneri K-404]
gi|420347065|ref|ZP_14848471.1| cold shock-like protein CspC [Shigella boydii 965-58]
gi|420352858|ref|ZP_14853987.1| cold shock-like protein CspC [Shigella boydii 4444-74]
gi|420358148|ref|ZP_14859141.1| cold shock-like protein CspC [Shigella sonnei 3226-85]
gi|420363188|ref|ZP_14864090.1| cold shock protein CspC [Shigella sonnei 4822-66]
gi|420366530|ref|ZP_14867370.1| cold shock-like protein CspC [Shigella flexneri 1235-66]
gi|420372031|ref|ZP_14872370.1| cold shock-like protein CspC [Shigella flexneri 1235-66]
gi|420380435|ref|ZP_14879901.1| cold shock-like protein CspC [Shigella dysenteriae 225-75]
gi|420385816|ref|ZP_14885175.1| cold shock-like protein CspC [Escherichia coli EPECa12]
gi|420391503|ref|ZP_14890760.1| cold shock protein CspC [Escherichia coli EPEC C342-62]
gi|421358718|ref|ZP_15809015.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 622731-39]
gi|421362688|ref|ZP_15812940.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639016-6]
gi|421367888|ref|ZP_15818081.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 640631]
gi|421370445|ref|ZP_15820610.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-0424]
gi|421377933|ref|ZP_15828022.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-6]
gi|421382541|ref|ZP_15832587.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 485549-17]
gi|421387731|ref|ZP_15837730.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-22]
gi|421391834|ref|ZP_15841800.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-70]
gi|421394962|ref|ZP_15844901.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-26]
gi|421401226|ref|ZP_15851102.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-37]
gi|421403172|ref|ZP_15853026.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-46]
gi|421410539|ref|ZP_15860320.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-50]
gi|421412804|ref|ZP_15862558.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-1427]
gi|421416797|ref|ZP_15866516.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-2659]
gi|421421792|ref|ZP_15871460.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 78-1757]
gi|421425934|ref|ZP_15875568.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22510-1]
gi|421431388|ref|ZP_15880973.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 8b-1]
gi|421436683|ref|ZP_15886210.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648905 5-18]
gi|421441255|ref|ZP_15890725.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 6-18]
gi|421446807|ref|ZP_15896219.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 50-3079]
gi|421447917|ref|ZP_15897313.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 58-6482]
gi|421570564|ref|ZP_16016252.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00322]
gi|421574777|ref|ZP_16020398.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00325]
gi|421579615|ref|ZP_16025177.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00326]
gi|421583015|ref|ZP_16028544.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00328]
gi|421682221|ref|ZP_16122035.1| cold shock protein CspC [Shigella flexneri 1485-80]
gi|421725832|ref|ZP_16165015.1| Cold shock-like protein cspC [Klebsiella oxytoca M5al]
gi|421774182|ref|ZP_16210795.1| Cold shock-like protein cspC [Escherichia coli AD30]
gi|421812503|ref|ZP_16248250.1| cold shock-like protein cspC [Escherichia coli 8.0416]
gi|421818537|ref|ZP_16254049.1| cold shock-like protein CspC [Escherichia coli 10.0821]
gi|421824158|ref|ZP_16259552.1| cold shock-like protein cspC [Escherichia coli FRIK920]
gi|421831045|ref|ZP_16266343.1| cold shock-like protein cspC [Escherichia coli PA7]
gi|421847645|ref|ZP_16280780.1| Cold shock-like protein cspC [Citrobacter freundii ATCC 8090 =
MTCC 1658]
gi|421885188|ref|ZP_16316389.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Senftenberg str. SS209]
gi|421913486|ref|ZP_16343167.1| Cold shock protein CspC [Klebsiella pneumoniae subsp. pneumoniae
ST258-K26BO]
gi|421919013|ref|ZP_16348523.1| Cold shock protein CspC [Klebsiella pneumoniae subsp. pneumoniae
ST258-K28BO]
gi|422031053|ref|ZP_16377234.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm2]
gi|422335256|ref|ZP_16416257.1| cold shock-like protein CspC [Escherichia coli 4_1_47FAA]
gi|422353968|ref|ZP_16434715.1| cold shock protein CspE [Escherichia coli MS 117-3]
gi|422359661|ref|ZP_16440298.1| cold shock protein CspE [Escherichia coli MS 110-3]
gi|422366932|ref|ZP_16447389.1| cold shock protein CspE [Escherichia coli MS 153-1]
gi|422368332|ref|ZP_16448744.1| cold shock protein CspE [Escherichia coli MS 16-3]
gi|422377113|ref|ZP_16457356.1| cold shock protein CspE [Escherichia coli MS 60-1]
gi|422381601|ref|ZP_16461765.1| cold shock protein CspE [Escherichia coli MS 57-2]
gi|422749048|ref|ZP_16802960.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli H252]
gi|422755158|ref|ZP_16808983.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli H263]
gi|422761069|ref|ZP_16814828.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli E1167]
gi|422766389|ref|ZP_16820116.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli E1520]
gi|422772302|ref|ZP_16825990.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli E482]
gi|422774277|ref|ZP_16827933.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli H120]
gi|422781276|ref|ZP_16834061.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli TW10509]
gi|422786412|ref|ZP_16839151.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli H489]
gi|422790931|ref|ZP_16843635.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli TA007]
gi|422799108|ref|ZP_16847607.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli M863]
gi|422805834|ref|ZP_16854266.1| cold-shock DNA-binding domain-containing protein [Escherichia
fergusonii B253]
gi|422816896|ref|ZP_16865110.1| cold shock-like protein CspC [Escherichia coli M919]
gi|422828870|ref|ZP_16877039.1| cold shock-like protein cspC [Escherichia coli B093]
gi|422835783|ref|ZP_16883835.1| cold shock-like protein cspC [Escherichia coli E101]
gi|422838260|ref|ZP_16886233.1| cold shock-like protein cspC [Escherichia coli H397]
gi|422956815|ref|ZP_16969289.1| cold shock-like protein CspC [Escherichia coli H494]
gi|422973394|ref|ZP_16975778.1| cold shock-like protein CspC [Escherichia coli TA124]
gi|422987875|ref|ZP_16978651.1| cold shock-like protein CspC [Escherichia coli O104:H4 str.
C227-11]
gi|422994756|ref|ZP_16985520.1| cold shock-like protein CspC [Escherichia coli O104:H4 str.
C236-11]
gi|422999896|ref|ZP_16990650.1| cold shock-like protein CspC [Escherichia coli O104:H4 str.
09-7901]
gi|423003507|ref|ZP_16994253.1| cold shock-like protein CspC [Escherichia coli O104:H4 str.
04-8351]
gi|423010072|ref|ZP_17000810.1| cold shock-like protein CspC [Escherichia coli O104:H4 str.
11-3677]
gi|423019299|ref|ZP_17010008.1| cold shock-like protein CspC [Escherichia coli O104:H4 str.
11-4404]
gi|423024465|ref|ZP_17015162.1| cold shock-like protein CspC [Escherichia coli O104:H4 str.
11-4522]
gi|423030282|ref|ZP_17020970.1| cold shock-like protein CspC [Escherichia coli O104:H4 str.
11-4623]
gi|423038114|ref|ZP_17028788.1| cold shock-like protein CspC [Escherichia coli O104:H4 str.
11-4632 C1]
gi|423043234|ref|ZP_17033901.1| cold shock-like protein CspC [Escherichia coli O104:H4 str.
11-4632 C2]
gi|423044976|ref|ZP_17035637.1| cold shock-like protein CspC [Escherichia coli O104:H4 str.
11-4632 C3]
gi|423053509|ref|ZP_17042317.1| cold shock-like protein CspC [Escherichia coli O104:H4 str.
11-4632 C4]
gi|423060473|ref|ZP_17049269.1| cold shock-like protein CspC [Escherichia coli O104:H4 str.
11-4632 C5]
gi|423103629|ref|ZP_17091331.1| cold shock-like protein CspC [Klebsiella oxytoca 10-5242]
gi|423109021|ref|ZP_17096716.1| cold shock-like protein CspC [Klebsiella oxytoca 10-5243]
gi|423114981|ref|ZP_17102672.1| cold shock-like protein CspC [Klebsiella oxytoca 10-5245]
gi|423120907|ref|ZP_17108591.1| cold shock-like protein CspC [Klebsiella oxytoca 10-5246]
gi|423124483|ref|ZP_17112162.1| cold shock-like protein CspC [Klebsiella oxytoca 10-5250]
gi|423140337|ref|ZP_17127975.1| cold shock protein CspE [Salmonella enterica subsp. houtenae str.
ATCC BAA-1581]
gi|423704711|ref|ZP_17679134.1| cold shock-like protein CspC [Escherichia coli H730]
gi|423705808|ref|ZP_17680191.1| cold shock-like protein CspC [Escherichia coli B799]
gi|423711506|ref|ZP_17685815.1| cold shock-like protein cspC [Escherichia coli PA31]
gi|424077661|ref|ZP_17814715.1| cold shock-like protein cspC [Escherichia coli FDA505]
gi|424084037|ref|ZP_17820598.1| cold shock-like protein cspC [Escherichia coli FDA517]
gi|424090458|ref|ZP_17826486.1| cold shock-like protein cspC [Escherichia coli FRIK1996]
gi|424096983|ref|ZP_17832403.1| cold shock-like protein cspC [Escherichia coli FRIK1985]
gi|424103321|ref|ZP_17838197.1| cold shock-like protein cspC [Escherichia coli FRIK1990]
gi|424110044|ref|ZP_17844363.1| cold shock-like protein cspC [Escherichia coli 93-001]
gi|424115750|ref|ZP_17849681.1| cold shock-like protein cspC [Escherichia coli PA3]
gi|424122119|ref|ZP_17855532.1| cold shock-like protein cspC [Escherichia coli PA5]
gi|424128245|ref|ZP_17861221.1| cold shock-like protein cspC [Escherichia coli PA9]
gi|424134436|ref|ZP_17866982.1| cold shock-like protein cspC [Escherichia coli PA10]
gi|424141075|ref|ZP_17873053.1| cold shock-like protein cspC [Escherichia coli PA14]
gi|424147502|ref|ZP_17878963.1| cold shock-like protein cspC [Escherichia coli PA15]
gi|424153435|ref|ZP_17884450.1| cold shock-like protein cspC [Escherichia coli PA24]
gi|424235928|ref|ZP_17889901.1| cold shock-like protein cspC [Escherichia coli PA25]
gi|424313515|ref|ZP_17895808.1| cold shock-like protein cspC [Escherichia coli PA28]
gi|424449858|ref|ZP_17901632.1| cold shock-like protein cspC [Escherichia coli PA32]
gi|424456027|ref|ZP_17907255.1| cold shock-like protein cspC [Escherichia coli PA33]
gi|424462332|ref|ZP_17912904.1| cold shock-like protein cspC [Escherichia coli PA39]
gi|424468731|ref|ZP_17918645.1| cold shock-like protein cspC [Escherichia coli PA41]
gi|424475316|ref|ZP_17924725.1| cold shock-like protein cspC [Escherichia coli PA42]
gi|424481058|ref|ZP_17930100.1| cold shock-like protein cspC [Escherichia coli TW07945]
gi|424487237|ref|ZP_17935864.1| cold shock-like protein cspC [Escherichia coli TW09098]
gi|424493642|ref|ZP_17941550.1| cold shock-like protein cspC [Escherichia coli TW09195]
gi|424500501|ref|ZP_17947501.1| cold shock-like protein cspC [Escherichia coli EC4203]
gi|424506656|ref|ZP_17953169.1| cold shock-like protein cspC [Escherichia coli EC4196]
gi|424514142|ref|ZP_17958921.1| cold shock-like protein cspC [Escherichia coli TW14313]
gi|424520433|ref|ZP_17964627.1| cold shock-like protein cspC [Escherichia coli TW14301]
gi|424526342|ref|ZP_17970126.1| cold shock-like protein cspC [Escherichia coli EC4421]
gi|424532506|ref|ZP_17975911.1| cold shock-like protein cspC [Escherichia coli EC4422]
gi|424538509|ref|ZP_17981526.1| cold shock-like protein cspC [Escherichia coli EC4013]
gi|424544475|ref|ZP_17986999.1| cold shock-like protein cspC [Escherichia coli EC4402]
gi|424550741|ref|ZP_17992688.1| cold shock-like protein cspC [Escherichia coli EC4439]
gi|424556987|ref|ZP_17998464.1| cold shock-like protein cspC [Escherichia coli EC4436]
gi|424563335|ref|ZP_18004393.1| cold shock-like protein cspC [Escherichia coli EC4437]
gi|424569407|ref|ZP_18010058.1| cold shock-like protein cspC [Escherichia coli EC4448]
gi|424575533|ref|ZP_18015706.1| cold shock-like protein cspC [Escherichia coli EC1845]
gi|424581392|ref|ZP_18021114.1| cold shock-like protein cspC [Escherichia coli EC1863]
gi|424729888|ref|ZP_18158488.1| hypothetical protein B397_1469 [Citrobacter sp. L17]
gi|424752041|ref|ZP_18180047.1| Cold shock-like protein cspC [Escherichia coli O26:H11 str.
CFSAN001629]
gi|424756027|ref|ZP_18183864.1| Cold shock-like protein cspC [Escherichia coli O111:H11 str.
CFSAN001630]
gi|424770334|ref|ZP_18197539.1| Cold shock-like protein cspC [Escherichia coli O111:H8 str.
CFSAN001632]
gi|424816011|ref|ZP_18241162.1| cold shock-like protein CspC [Escherichia fergusonii ECD227]
gi|424831268|ref|ZP_18255996.1| cold shock protein CspC [Klebsiella pneumoniae subsp. pneumoniae
Ecl8]
gi|424837817|ref|ZP_18262454.1| cold shock-like protein CspC [Shigella flexneri 5a str. M90T]
gi|424932796|ref|ZP_18351168.1| Cold shock-like protein cspC [Klebsiella pneumoniae subsp.
pneumoniae KpQ3]
gi|425076088|ref|ZP_18479191.1| cold shock-like protein CspC [Klebsiella pneumoniae subsp.
pneumoniae WGLW1]
gi|425082171|ref|ZP_18485268.1| cold shock-like protein CspC [Klebsiella pneumoniae subsp.
pneumoniae WGLW2]
gi|425086721|ref|ZP_18489814.1| cold shock-like protein CspC [Klebsiella pneumoniae subsp.
pneumoniae WGLW3]
gi|425092214|ref|ZP_18495299.1| cold shock-like protein CspC [Klebsiella pneumoniae subsp.
pneumoniae WGLW5]
gi|425098240|ref|ZP_18501034.1| cold shock-like protein CspC [Escherichia coli 3.4870]
gi|425104420|ref|ZP_18506785.1| cold shock-like protein CspC [Escherichia coli 5.2239]
gi|425110249|ref|ZP_18512246.1| cold shock-like protein cspC [Escherichia coli 6.0172]
gi|425115205|ref|ZP_18517013.1| cold shock-like protein cspC [Escherichia coli 8.0566]
gi|425119924|ref|ZP_18521630.1| cold shock-like protein CspC [Escherichia coli 8.0569]
gi|425126039|ref|ZP_18527303.1| cold shock-like protein CspC [Escherichia coli 8.0586]
gi|425131895|ref|ZP_18532798.1| cold shock-like protein CspC [Escherichia coli 8.2524]
gi|425138263|ref|ZP_18538732.1| cold shock-like protein cspC [Escherichia coli 10.0833]
gi|425144221|ref|ZP_18544282.1| cold shock-like protein CspC [Escherichia coli 10.0869]
gi|425150289|ref|ZP_18549970.1| cold shock-like protein CspC [Escherichia coli 88.0221]
gi|425156134|ref|ZP_18555461.1| cold shock-like protein cspC [Escherichia coli PA34]
gi|425162645|ref|ZP_18561584.1| cold shock-like protein cspC [Escherichia coli FDA506]
gi|425168319|ref|ZP_18566865.1| cold shock-like protein cspC [Escherichia coli FDA507]
gi|425174409|ref|ZP_18572580.1| cold shock-like protein cspC [Escherichia coli FDA504]
gi|425180350|ref|ZP_18578130.1| cold shock-like protein cspC [Escherichia coli FRIK1999]
gi|425186586|ref|ZP_18583945.1| cold shock-like protein cspC [Escherichia coli FRIK1997]
gi|425193455|ref|ZP_18590304.1| cold shock-like protein cspC [Escherichia coli NE1487]
gi|425199845|ref|ZP_18596163.1| cold shock-like protein cspC [Escherichia coli NE037]
gi|425206293|ref|ZP_18602173.1| cold shock-like protein cspC [Escherichia coli FRIK2001]
gi|425212030|ref|ZP_18607516.1| cold shock-like protein cspC [Escherichia coli PA4]
gi|425218159|ref|ZP_18613205.1| cold shock-like protein cspC [Escherichia coli PA23]
gi|425224675|ref|ZP_18619238.1| cold shock-like protein cspC [Escherichia coli PA49]
gi|425230909|ref|ZP_18625037.1| cold shock-like protein cspC [Escherichia coli PA45]
gi|425237059|ref|ZP_18630818.1| cold shock-like protein cspC [Escherichia coli TT12B]
gi|425243121|ref|ZP_18636501.1| cold shock-like protein cspC [Escherichia coli MA6]
gi|425249280|ref|ZP_18642276.1| cold shock-like protein cspC [Escherichia coli 5905]
gi|425255051|ref|ZP_18647644.1| cold shock-like protein cspC [Escherichia coli CB7326]
gi|425261345|ref|ZP_18653432.1| cold shock-like protein cspC [Escherichia coli EC96038]
gi|425267384|ref|ZP_18659068.1| cold shock-like protein cspC [Escherichia coli 5412]
gi|425272933|ref|ZP_18664366.1| cold shock-like protein cspC [Escherichia coli TW15901]
gi|425278065|ref|ZP_18669329.1| cold shock-like protein cspC [Escherichia coli ARS4.2123]
gi|425283415|ref|ZP_18674475.1| cold shock-like protein cspC [Escherichia coli TW00353]
gi|425288698|ref|ZP_18679566.1| cold shock-like protein cspC [Escherichia coli 3006]
gi|425294838|ref|ZP_18685122.1| cold shock-like protein cspC [Escherichia coli PA38]
gi|425300589|ref|ZP_18690533.1| cold shock-like protein cspC [Escherichia coli 07798]
gi|425305371|ref|ZP_18695113.1| cold shock-like protein cspC [Escherichia coli N1]
gi|425311524|ref|ZP_18700769.1| cold shock-like protein cspC [Escherichia coli EC1735]
gi|425317451|ref|ZP_18706304.1| cold shock-like protein cspC [Escherichia coli EC1736]
gi|425323556|ref|ZP_18711989.1| cold shock-like protein cspC [Escherichia coli EC1737]
gi|425329719|ref|ZP_18717686.1| cold shock-like protein cspC [Escherichia coli EC1846]
gi|425335886|ref|ZP_18723376.1| cold shock-like protein cspC [Escherichia coli EC1847]
gi|425342312|ref|ZP_18729292.1| cold shock-like protein cspC [Escherichia coli EC1848]
gi|425348123|ref|ZP_18734695.1| cold shock-like protein cspC [Escherichia coli EC1849]
gi|425354424|ref|ZP_18740569.1| cold shock-like protein cspC [Escherichia coli EC1850]
gi|425360396|ref|ZP_18746129.1| cold shock-like protein cspC [Escherichia coli EC1856]
gi|425366521|ref|ZP_18751808.1| cold shock-like protein cspC [Escherichia coli EC1862]
gi|425372943|ref|ZP_18757678.1| cold shock-like protein cspC [Escherichia coli EC1864]
gi|425379580|ref|ZP_18763692.1| cold shock-like protein cspC [Escherichia coli EC1865]
gi|425385768|ref|ZP_18769416.1| cold shock-like protein cspC [Escherichia coli EC1866]
gi|425392457|ref|ZP_18775656.1| cold shock-like protein cspC [Escherichia coli EC1868]
gi|425398612|ref|ZP_18781401.1| cold shock-like protein cspC [Escherichia coli EC1869]
gi|425404644|ref|ZP_18786975.1| cold shock-like protein cspC [Escherichia coli EC1870]
gi|425411221|ref|ZP_18793064.1| cold shock-like protein cspC [Escherichia coli NE098]
gi|425417528|ref|ZP_18798873.1| cold shock-like protein cspC [Escherichia coli FRIK523]
gi|425422520|ref|ZP_18803700.1| cold shock-like protein cspC [Escherichia coli 0.1288]
gi|425428783|ref|ZP_18809477.1| cold shock-like protein cspC [Escherichia coli 0.1304]
gi|427550186|ref|ZP_18927741.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm8]
gi|427633601|ref|ZP_18947006.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm6]
gi|427656067|ref|ZP_18951771.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm10]
gi|427668434|ref|ZP_18961482.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm12]
gi|427766572|ref|ZP_18966649.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm5]
gi|427804953|ref|ZP_18972020.1| cold shock protein [Escherichia coli chi7122]
gi|428148301|ref|ZP_18996187.1| Cold shock protein CspC [Klebsiella pneumoniae subsp. pneumoniae
ST512-K30BO]
gi|428785434|ref|ZP_19002925.1| Cold shock-like protein cspC (CSP-C) [Erwinia amylovora ACW56400]
gi|428931380|ref|ZP_19004977.1| Cold shock-like protein cspC [Klebsiella pneumoniae JHCK1]
gi|428937911|ref|ZP_19011045.1| Cold shock-like protein cspC [Klebsiella pneumoniae VA360]
gi|428947142|ref|ZP_19019529.1| cold shock-like protein CspC [Escherichia coli 88.1467]
gi|428953379|ref|ZP_19025228.1| cold shock-like protein CspC [Escherichia coli 88.1042]
gi|428959300|ref|ZP_19030680.1| cold shock-like protein CspC [Escherichia coli 89.0511]
gi|428965753|ref|ZP_19036610.1| cold shock-like protein CspC [Escherichia coli 90.0091]
gi|428971670|ref|ZP_19042089.1| cold shock-like protein CspC [Escherichia coli 90.0039]
gi|428978216|ref|ZP_19048105.1| cold shock-like protein CspC [Escherichia coli 90.2281]
gi|428983955|ref|ZP_19053410.1| cold shock-like protein CspC [Escherichia coli 93.0055]
gi|428990125|ref|ZP_19059172.1| cold shock-like protein CspC [Escherichia coli 93.0056]
gi|428995898|ref|ZP_19064579.1| cold shock-like protein CspC [Escherichia coli 94.0618]
gi|429002020|ref|ZP_19070260.1| cold shock-like protein CspC [Escherichia coli 95.0183]
gi|429008269|ref|ZP_19075872.1| cold shock-like protein CspC [Escherichia coli 95.1288]
gi|429014755|ref|ZP_19081724.1| cold shock-like protein CspC [Escherichia coli 95.0943]
gi|429020628|ref|ZP_19087203.1| cold shock-like protein CspC [Escherichia coli 96.0428]
gi|429026669|ref|ZP_19092764.1| cold shock-like protein CspC [Escherichia coli 96.0427]
gi|429032746|ref|ZP_19098352.1| cold shock-like protein CspC [Escherichia coli 96.0939]
gi|429038890|ref|ZP_19104080.1| cold shock-like protein CspC [Escherichia coli 96.0932]
gi|429044833|ref|ZP_19109600.1| cold shock-like protein CspC [Escherichia coli 96.0107]
gi|429050339|ref|ZP_19114942.1| cold shock-like protein CspC [Escherichia coli 97.0003]
gi|429061255|ref|ZP_19125322.1| cold shock-like protein CspC [Escherichia coli 97.0007]
gi|429067347|ref|ZP_19130893.1| cold shock-like protein CspC [Escherichia coli 99.0672]
gi|429073352|ref|ZP_19136643.1| cold shock-like protein cspC [Escherichia coli 99.0678]
gi|429078677|ref|ZP_19141841.1| cold shock-like protein CspC [Escherichia coli 99.0713]
gi|429719331|ref|ZP_19254270.1| cold shock-like protein CspC [Escherichia coli O104:H4 str.
Ec11-9450]
gi|429724674|ref|ZP_19259541.1| cold shock-like protein CspC [Escherichia coli O104:H4 str.
Ec11-9990]
gi|429776379|ref|ZP_19308361.1| cold shock-like protein CspC [Escherichia coli O104:H4 str.
11-02030]
gi|429781154|ref|ZP_19313086.1| cold shock-like protein CspC [Escherichia coli O104:H4 str.
11-02033-1]
gi|429783413|ref|ZP_19315329.1| cold shock-like protein CspC [Escherichia coli O104:H4 str.
11-02092]
gi|429790785|ref|ZP_19322643.1| cold shock-like protein CspC [Escherichia coli O104:H4 str.
11-02093]
gi|429796517|ref|ZP_19328336.1| cold shock-like protein CspC [Escherichia coli O104:H4 str.
11-02281]
gi|429798210|ref|ZP_19330012.1| cold shock-like protein CspC [Escherichia coli O104:H4 str.
11-02318]
gi|429806723|ref|ZP_19338451.1| cold shock-like protein CspC [Escherichia coli O104:H4 str.
11-02913]
gi|429811071|ref|ZP_19342772.1| cold shock-like protein CspC [Escherichia coli O104:H4 str.
11-03439]
gi|429817143|ref|ZP_19348785.1| cold shock-like protein CspC [Escherichia coli O104:H4 str.
11-04080]
gi|429822354|ref|ZP_19353953.1| cold shock-like protein CspC [Escherichia coli O104:H4 str.
11-03943]
gi|429826596|ref|ZP_19357732.1| cold shock-like protein CspC [Escherichia coli 96.0109]
gi|429832869|ref|ZP_19363349.1| cold shock-like protein CspC [Escherichia coli 97.0010]
gi|429912871|ref|ZP_19378827.1| cold shock-like protein CspC [Escherichia coli O104:H4 str.
Ec11-9941]
gi|429913743|ref|ZP_19379691.1| cold shock-like protein CspC [Escherichia coli O104:H4 str.
Ec11-4984]
gi|429918785|ref|ZP_19384718.1| cold shock-like protein CspC [Escherichia coli O104:H4 str.
Ec11-5604]
gi|429924592|ref|ZP_19390506.1| cold shock-like protein CspC [Escherichia coli O104:H4 str.
Ec11-4986]
gi|429928530|ref|ZP_19394432.1| cold shock-like protein CspC [Escherichia coli O104:H4 str.
Ec11-4987]
gi|429935082|ref|ZP_19400969.1| cold shock-like protein CspC [Escherichia coli O104:H4 str.
Ec11-4988]
gi|429940753|ref|ZP_19406627.1| cold shock-like protein CspC [Escherichia coli O104:H4 str.
Ec11-5603]
gi|429948386|ref|ZP_19414241.1| cold shock-like protein CspC [Escherichia coli O104:H4 str.
Ec11-6006]
gi|429951031|ref|ZP_19416879.1| cold shock-like protein CspC [Escherichia coli O104:H4 str.
Ec12-0465]
gi|429954327|ref|ZP_19420163.1| cold shock-like protein CspC [Escherichia coli O104:H4 str.
Ec12-0466]
gi|432353734|ref|ZP_19597008.1| cold shock-like protein CspC [Escherichia coli KTE2]
gi|432358154|ref|ZP_19601383.1| cold shock-like protein CspC [Escherichia coli KTE4]
gi|432362780|ref|ZP_19605951.1| cold shock-like protein CspC [Escherichia coli KTE5]
gi|432369947|ref|ZP_19613036.1| cold shock-like protein CspC [Escherichia coli KTE10]
gi|432371984|ref|ZP_19615034.1| cold shock-like protein CspC [Escherichia coli KTE11]
gi|432376972|ref|ZP_19619969.1| cold shock-like protein CspC [Escherichia coli KTE12]
gi|432381488|ref|ZP_19624433.1| cold shock-like protein CspC [Escherichia coli KTE15]
gi|432387241|ref|ZP_19630132.1| cold shock-like protein CspC [Escherichia coli KTE16]
gi|432392230|ref|ZP_19635070.1| cold shock-like protein CspC [Escherichia coli KTE21]
gi|432397616|ref|ZP_19640397.1| cold shock-like protein CspC [Escherichia coli KTE25]
gi|432402085|ref|ZP_19644838.1| cold shock-like protein CspC [Escherichia coli KTE26]
gi|432406832|ref|ZP_19649541.1| cold shock-like protein CspC [Escherichia coli KTE28]
gi|432412037|ref|ZP_19654703.1| cold shock-like protein CspC [Escherichia coli KTE39]
gi|432417047|ref|ZP_19659658.1| cold shock-like protein CspC [Escherichia coli KTE44]
gi|432422082|ref|ZP_19664630.1| cold shock-like protein CspC [Escherichia coli KTE178]
gi|432426258|ref|ZP_19668763.1| cold shock-like protein CspC [Escherichia coli KTE181]
gi|432431972|ref|ZP_19674404.1| cold shock-like protein CspC [Escherichia coli KTE187]
gi|432436011|ref|ZP_19678404.1| cold shock-like protein CspC [Escherichia coli KTE188]
gi|432441233|ref|ZP_19683574.1| cold shock-like protein CspC [Escherichia coli KTE189]
gi|432449837|ref|ZP_19692109.1| cold shock-like protein CspC [Escherichia coli KTE193]
gi|432456848|ref|ZP_19699035.1| cold shock-like protein CspC [Escherichia coli KTE201]
gi|432460877|ref|ZP_19703028.1| cold shock-like protein CspC [Escherichia coli KTE204]
gi|432465809|ref|ZP_19707900.1| cold shock-like protein CspC [Escherichia coli KTE205]
gi|432471120|ref|ZP_19713167.1| cold shock-like protein CspC [Escherichia coli KTE206]
gi|432476000|ref|ZP_19718000.1| cold shock-like protein CspC [Escherichia coli KTE208]
gi|432481163|ref|ZP_19723121.1| cold shock-like protein CspC [Escherichia coli KTE210]
gi|432485578|ref|ZP_19727494.1| cold shock-like protein CspC [Escherichia coli KTE212]
gi|432489431|ref|ZP_19731312.1| cold shock-like protein CspC [Escherichia coli KTE213]
gi|432495882|ref|ZP_19737681.1| cold shock-like protein CspC [Escherichia coli KTE214]
gi|432500175|ref|ZP_19741935.1| cold shock-like protein CspC [Escherichia coli KTE216]
gi|432504548|ref|ZP_19746278.1| cold shock-like protein CspC [Escherichia coli KTE220]
gi|432514055|ref|ZP_19751281.1| cold shock-like protein CspC [Escherichia coli KTE224]
gi|432517887|ref|ZP_19755079.1| cold shock-like protein CspC [Escherichia coli KTE228]
gi|432523923|ref|ZP_19761055.1| cold shock-like protein CspC [Escherichia coli KTE230]
gi|432531199|ref|ZP_19768228.1| cold shock-like protein CspC [Escherichia coli KTE233]
gi|432534068|ref|ZP_19771046.1| cold shock-like protein CspC [Escherichia coli KTE234]
gi|432537986|ref|ZP_19774889.1| cold shock-like protein CspC [Escherichia coli KTE235]
gi|432543335|ref|ZP_19780184.1| cold shock-like protein CspC [Escherichia coli KTE236]
gi|432548825|ref|ZP_19785599.1| cold shock-like protein CspC [Escherichia coli KTE237]
gi|432553781|ref|ZP_19790508.1| cold shock-like protein CspC [Escherichia coli KTE47]
gi|432558902|ref|ZP_19795580.1| cold shock-like protein CspC [Escherichia coli KTE49]
gi|432564021|ref|ZP_19800611.1| cold shock-like protein CspC [Escherichia coli KTE51]
gi|432568815|ref|ZP_19805333.1| cold shock-like protein CspC [Escherichia coli KTE53]
gi|432573851|ref|ZP_19810333.1| cold shock-like protein CspC [Escherichia coli KTE55]
gi|432580569|ref|ZP_19816995.1| cold shock-like protein CspC [Escherichia coli KTE56]
gi|432583963|ref|ZP_19820362.1| cold shock-like protein CspC [Escherichia coli KTE57]
gi|432588079|ref|ZP_19824435.1| cold shock-like protein CspC [Escherichia coli KTE58]
gi|432593038|ref|ZP_19829356.1| cold shock-like protein CspC [Escherichia coli KTE60]
gi|432597801|ref|ZP_19834077.1| cold shock-like protein CspC [Escherichia coli KTE62]
gi|432602343|ref|ZP_19838587.1| cold shock-like protein CspC [Escherichia coli KTE66]
gi|432607645|ref|ZP_19843834.1| cold shock-like protein CspC [Escherichia coli KTE67]
gi|432611557|ref|ZP_19847720.1| cold shock-like protein CspC [Escherichia coli KTE72]
gi|432616788|ref|ZP_19852909.1| cold shock-like protein CspC [Escherichia coli KTE75]
gi|432622022|ref|ZP_19858056.1| cold shock-like protein CspC [Escherichia coli KTE76]
gi|432627408|ref|ZP_19863388.1| cold shock-like protein CspC [Escherichia coli KTE77]
gi|432631558|ref|ZP_19867487.1| cold shock-like protein CspC [Escherichia coli KTE80]
gi|432637050|ref|ZP_19872926.1| cold shock-like protein CspC [Escherichia coli KTE81]
gi|432641203|ref|ZP_19877040.1| cold shock-like protein CspC [Escherichia coli KTE83]
gi|432646321|ref|ZP_19882111.1| cold shock-like protein CspC [Escherichia coli KTE86]
gi|432651256|ref|ZP_19887013.1| cold shock-like protein CspC [Escherichia coli KTE87]
gi|432655899|ref|ZP_19891605.1| cold shock-like protein CspC [Escherichia coli KTE93]
gi|432661056|ref|ZP_19896702.1| cold shock-like protein CspC [Escherichia coli KTE111]
gi|432666190|ref|ZP_19901772.1| cold shock-like protein CspC [Escherichia coli KTE116]
gi|432670903|ref|ZP_19906434.1| cold shock-like protein CspC [Escherichia coli KTE119]
gi|432674861|ref|ZP_19910334.1| cold shock-like protein CspC [Escherichia coli KTE142]
gi|432680403|ref|ZP_19915780.1| cold shock-like protein CspC [Escherichia coli KTE143]
gi|432685610|ref|ZP_19920912.1| cold shock-like protein CspC [Escherichia coli KTE156]
gi|432691762|ref|ZP_19926993.1| cold shock-like protein CspC [Escherichia coli KTE161]
gi|432694566|ref|ZP_19929773.1| cold shock-like protein CspC [Escherichia coli KTE162]
gi|432699175|ref|ZP_19934333.1| cold shock-like protein CspC [Escherichia coli KTE169]
gi|432704579|ref|ZP_19939683.1| cold shock-like protein CspC [Escherichia coli KTE171]
gi|432710728|ref|ZP_19945790.1| cold shock-like protein CspC [Escherichia coli KTE6]
gi|432713531|ref|ZP_19948572.1| cold shock-like protein CspC [Escherichia coli KTE8]
gi|432718940|ref|ZP_19953909.1| cold shock-like protein CspC [Escherichia coli KTE9]
gi|432723240|ref|ZP_19958160.1| cold shock-like protein CspC [Escherichia coli KTE17]
gi|432727827|ref|ZP_19962706.1| cold shock-like protein CspC [Escherichia coli KTE18]
gi|432732510|ref|ZP_19967343.1| cold shock-like protein CspC [Escherichia coli KTE45]
gi|432737312|ref|ZP_19972078.1| cold shock-like protein CspC [Escherichia coli KTE42]
gi|432741518|ref|ZP_19976237.1| cold shock-like protein CspC [Escherichia coli KTE23]
gi|432745799|ref|ZP_19980468.1| cold shock-like protein CspC [Escherichia coli KTE43]
gi|432750275|ref|ZP_19984882.1| cold shock-like protein CspC [Escherichia coli KTE29]
gi|432754562|ref|ZP_19989113.1| cold shock-like protein CspC [Escherichia coli KTE22]
gi|432759594|ref|ZP_19994089.1| cold shock-like protein CspC [Escherichia coli KTE46]
gi|432765178|ref|ZP_19999617.1| cold shock-like protein CspC [Escherichia coli KTE48]
gi|432770788|ref|ZP_20005132.1| cold shock-like protein CspC [Escherichia coli KTE50]
gi|432774910|ref|ZP_20009192.1| cold shock-like protein CspC [Escherichia coli KTE54]
gi|432778692|ref|ZP_20012935.1| cold shock-like protein CspC [Escherichia coli KTE59]
gi|432783700|ref|ZP_20017881.1| cold shock-like protein CspC [Escherichia coli KTE63]
gi|432787638|ref|ZP_20021770.1| cold shock-like protein CspC [Escherichia coli KTE65]
gi|432793027|ref|ZP_20027112.1| cold shock-like protein CspC [Escherichia coli KTE78]
gi|432798984|ref|ZP_20033007.1| cold shock-like protein CspC [Escherichia coli KTE79]
gi|432801973|ref|ZP_20035954.1| cold shock-like protein CspC [Escherichia coli KTE84]
gi|432805872|ref|ZP_20039810.1| cold shock-like protein CspC [Escherichia coli KTE91]
gi|432809465|ref|ZP_20043358.1| cold shock-like protein CspC [Escherichia coli KTE101]
gi|432815518|ref|ZP_20049303.1| cold shock-like protein CspC [Escherichia coli KTE115]
gi|432821074|ref|ZP_20054766.1| cold shock-like protein CspC [Escherichia coli KTE118]
gi|432827218|ref|ZP_20060870.1| cold shock-like protein CspC [Escherichia coli KTE123]
gi|432831803|ref|ZP_20065377.1| cold shock-like protein CspC [Escherichia coli KTE135]
gi|432834814|ref|ZP_20068353.1| cold shock-like protein CspC [Escherichia coli KTE136]
gi|432839446|ref|ZP_20072933.1| cold shock-like protein CspC [Escherichia coli KTE140]
gi|432844637|ref|ZP_20077536.1| cold shock-like protein CspC [Escherichia coli KTE141]
gi|432850807|ref|ZP_20081502.1| cold shock-like protein CspC [Escherichia coli KTE144]
gi|432861952|ref|ZP_20086712.1| cold shock-like protein CspC [Escherichia coli KTE146]
gi|432869022|ref|ZP_20089817.1| cold shock-like protein CspC [Escherichia coli KTE147]
gi|432882061|ref|ZP_20098141.1| cold shock-like protein CspC [Escherichia coli KTE154]
gi|432886763|ref|ZP_20100852.1| cold shock-like protein CspC [Escherichia coli KTE158]
gi|432894639|ref|ZP_20106460.1| cold shock-like protein CspC [Escherichia coli KTE165]
gi|432898795|ref|ZP_20109487.1| cold shock-like protein CspC [Escherichia coli KTE192]
gi|432904987|ref|ZP_20113893.1| cold shock-like protein CspC [Escherichia coli KTE194]
gi|432912861|ref|ZP_20118671.1| cold shock-like protein CspC [Escherichia coli KTE190]
gi|432919242|ref|ZP_20123373.1| cold shock-like protein CspC [Escherichia coli KTE173]
gi|432927049|ref|ZP_20128589.1| cold shock-like protein CspC [Escherichia coli KTE175]
gi|432934466|ref|ZP_20133975.1| cold shock-like protein CspC [Escherichia coli KTE184]
gi|432938003|ref|ZP_20136380.1| cold shock-like protein CspC [Escherichia coli KTE183]
gi|432947691|ref|ZP_20142847.1| cold shock-like protein CspC [Escherichia coli KTE196]
gi|432955256|ref|ZP_20147196.1| cold shock-like protein CspC [Escherichia coli KTE197]
gi|432961842|ref|ZP_20151632.1| cold shock-like protein CspC [Escherichia coli KTE202]
gi|432967945|ref|ZP_20156860.1| cold shock-like protein CspC [Escherichia coli KTE203]
gi|432971978|ref|ZP_20160846.1| cold shock-like protein CspC [Escherichia coli KTE207]
gi|432978423|ref|ZP_20167245.1| cold shock-like protein CspC [Escherichia coli KTE209]
gi|432981226|ref|ZP_20170002.1| cold shock-like protein CspC [Escherichia coli KTE211]
gi|432985507|ref|ZP_20174231.1| cold shock-like protein CspC [Escherichia coli KTE215]
gi|432990828|ref|ZP_20179492.1| cold shock-like protein CspC [Escherichia coli KTE217]
gi|432995482|ref|ZP_20184093.1| cold shock-like protein CspC [Escherichia coli KTE218]
gi|433000058|ref|ZP_20188588.1| cold shock-like protein CspC [Escherichia coli KTE223]
gi|433005271|ref|ZP_20193701.1| cold shock-like protein CspC [Escherichia coli KTE227]
gi|433007769|ref|ZP_20196187.1| cold shock-like protein CspC [Escherichia coli KTE229]
gi|433013958|ref|ZP_20202320.1| cold shock-like protein CspC [Escherichia coli KTE104]
gi|433018780|ref|ZP_20207026.1| cold shock-like protein CspC [Escherichia coli KTE105]
gi|433023587|ref|ZP_20211588.1| cold shock-like protein CspC [Escherichia coli KTE106]
gi|433028749|ref|ZP_20216611.1| cold shock-like protein CspC [Escherichia coli KTE109]
gi|433033562|ref|ZP_20221294.1| cold shock-like protein CspC [Escherichia coli KTE112]
gi|433038743|ref|ZP_20226347.1| cold shock-like protein CspC [Escherichia coli KTE113]
gi|433043414|ref|ZP_20230915.1| cold shock-like protein CspC [Escherichia coli KTE117]
gi|433048102|ref|ZP_20235471.1| cold shock-like protein CspC [Escherichia coli KTE120]
gi|433053326|ref|ZP_20240521.1| cold shock-like protein CspC [Escherichia coli KTE122]
gi|433058206|ref|ZP_20245265.1| cold shock-like protein CspC [Escherichia coli KTE124]
gi|433063216|ref|ZP_20250149.1| cold shock-like protein CspC [Escherichia coli KTE125]
gi|433068105|ref|ZP_20254906.1| cold shock-like protein CspC [Escherichia coli KTE128]
gi|433072931|ref|ZP_20259596.1| cold shock-like protein CspC [Escherichia coli KTE129]
gi|433077901|ref|ZP_20264452.1| cold shock-like protein CspC [Escherichia coli KTE131]
gi|433082687|ref|ZP_20269152.1| cold shock-like protein CspC [Escherichia coli KTE133]
gi|433087353|ref|ZP_20273737.1| cold shock-like protein CspC [Escherichia coli KTE137]
gi|433092232|ref|ZP_20278506.1| cold shock-like protein CspC [Escherichia coli KTE138]
gi|433096641|ref|ZP_20282838.1| cold shock-like protein CspC [Escherichia coli KTE139]
gi|433101278|ref|ZP_20287375.1| cold shock-like protein CspC [Escherichia coli KTE145]
gi|433106005|ref|ZP_20291996.1| cold shock-like protein CspC [Escherichia coli KTE148]
gi|433111039|ref|ZP_20296904.1| cold shock-like protein CspC [Escherichia coli KTE150]
gi|433115671|ref|ZP_20301475.1| cold shock-like protein CspC [Escherichia coli KTE153]
gi|433120361|ref|ZP_20306039.1| cold shock-like protein CspC [Escherichia coli KTE157]
gi|433125308|ref|ZP_20310883.1| cold shock-like protein CspC [Escherichia coli KTE160]
gi|433130350|ref|ZP_20315795.1| cold shock-like protein CspC [Escherichia coli KTE163]
gi|433135052|ref|ZP_20320406.1| cold shock-like protein CspC [Escherichia coli KTE166]
gi|433139371|ref|ZP_20324642.1| cold shock-like protein CspC [Escherichia coli KTE167]
gi|433144352|ref|ZP_20329504.1| cold shock-like protein CspC [Escherichia coli KTE168]
gi|433149319|ref|ZP_20334355.1| cold shock-like protein CspC [Escherichia coli KTE174]
gi|433153889|ref|ZP_20338844.1| cold shock-like protein CspC [Escherichia coli KTE176]
gi|433158852|ref|ZP_20343700.1| cold shock-like protein CspC [Escherichia coli KTE177]
gi|433163599|ref|ZP_20348344.1| cold shock-like protein CspC [Escherichia coli KTE179]
gi|433168720|ref|ZP_20353353.1| cold shock-like protein CspC [Escherichia coli KTE180]
gi|433173686|ref|ZP_20358220.1| cold shock-like protein CspC [Escherichia coli KTE232]
gi|433178465|ref|ZP_20362877.1| cold shock-like protein CspC [Escherichia coli KTE82]
gi|433183380|ref|ZP_20367645.1| cold shock-like protein CspC [Escherichia coli KTE85]
gi|433188553|ref|ZP_20372656.1| cold shock-like protein CspC [Escherichia coli KTE88]
gi|433193792|ref|ZP_20377791.1| cold shock-like protein CspC [Escherichia coli KTE90]
gi|433198384|ref|ZP_20382296.1| cold shock-like protein CspC [Escherichia coli KTE94]
gi|433203399|ref|ZP_20387180.1| cold shock-like protein CspC [Escherichia coli KTE95]
gi|433207919|ref|ZP_20391601.1| cold shock-like protein CspC [Escherichia coli KTE97]
gi|433212623|ref|ZP_20396226.1| cold shock-like protein CspC [Escherichia coli KTE99]
gi|433323056|ref|ZP_20400426.1| Cold shock-like protein cspC [Escherichia coli J96]
gi|436637299|ref|ZP_20515996.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22704]
gi|436799077|ref|ZP_20523631.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS44]
gi|436811327|ref|ZP_20530207.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1882]
gi|436815699|ref|ZP_20533250.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1884]
gi|436847029|ref|ZP_20539661.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1594]
gi|436851291|ref|ZP_20541890.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1566]
gi|436858056|ref|ZP_20546576.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1580]
gi|436865231|ref|ZP_20551198.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1543]
gi|436875596|ref|ZP_20557503.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1441]
gi|436883281|ref|ZP_20561710.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1810]
gi|436887858|ref|ZP_20564187.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1558]
gi|436896352|ref|ZP_20569108.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1018]
gi|436906331|ref|ZP_20575177.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1010]
gi|436911721|ref|ZP_20577550.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1729]
gi|436920114|ref|ZP_20582853.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0895]
gi|436930421|ref|ZP_20588646.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0899]
gi|436935673|ref|ZP_20591113.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1457]
gi|436942862|ref|ZP_20595808.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1747]
gi|436951644|ref|ZP_20600699.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0968]
gi|436964647|ref|ZP_20606283.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1444]
gi|436971378|ref|ZP_20609771.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1445]
gi|436985447|ref|ZP_20614967.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1559]
gi|436991585|ref|ZP_20617596.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1565]
gi|437012200|ref|ZP_20624713.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1808]
gi|437020829|ref|ZP_20627640.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1811]
gi|437029880|ref|ZP_20631062.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0956]
gi|437042482|ref|ZP_20636073.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1455]
gi|437052354|ref|ZP_20641777.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1575]
gi|437058193|ref|ZP_20645040.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1725]
gi|437069173|ref|ZP_20651128.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1745]
gi|437075884|ref|ZP_20654247.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1791]
gi|437086554|ref|ZP_20660563.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1795]
gi|437095471|ref|ZP_20664575.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 576709]
gi|437116290|ref|ZP_20669638.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 635290-58]
gi|437125904|ref|ZP_20674173.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-16]
gi|437134606|ref|ZP_20679030.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-19]
gi|437139849|ref|ZP_20682113.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-2]
gi|437147011|ref|ZP_20686563.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-9]
gi|437155303|ref|ZP_20691522.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629163]
gi|437163110|ref|ZP_20696464.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE15-1]
gi|437167293|ref|ZP_20698611.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_N202]
gi|437177246|ref|ZP_20703726.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_56-3991]
gi|437186361|ref|ZP_20709590.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_76-3618]
gi|437214329|ref|ZP_20712832.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13183-1]
gi|437261249|ref|ZP_20718319.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_81-2490]
gi|437265848|ref|ZP_20720663.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL909]
gi|437282077|ref|ZP_20729078.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL913]
gi|437286487|ref|ZP_20730141.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_69-4941]
gi|437308335|ref|ZP_20735376.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 638970-15]
gi|437321151|ref|ZP_20738500.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 17927]
gi|437335933|ref|ZP_20742850.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS4]
gi|437360680|ref|ZP_20748299.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22558]
gi|437430188|ref|ZP_20755690.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 22-17]
gi|437447442|ref|ZP_20758951.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 40-18]
gi|437462500|ref|ZP_20762651.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 1-1]
gi|437478430|ref|ZP_20767443.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 4-1]
gi|437497838|ref|ZP_20773572.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642046 4-7]
gi|437500902|ref|ZP_20774204.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648898 4-5]
gi|437529771|ref|ZP_20780430.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648899 3-17]
gi|437553236|ref|ZP_20783878.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648900 1-16]
gi|437575121|ref|ZP_20789917.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 1-17]
gi|437591942|ref|ZP_20794920.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 39-2]
gi|437601387|ref|ZP_20797631.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648902 6-8]
gi|437614212|ref|ZP_20801839.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648903 1-6]
gi|437654352|ref|ZP_20810380.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648904 3-6]
gi|437657869|ref|ZP_20811304.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 653049 13-19]
gi|437674715|ref|ZP_20816637.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 8-1]
gi|437695459|ref|ZP_20822100.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 9-7]
gi|437711993|ref|ZP_20826985.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 42-20]
gi|437723716|ref|ZP_20829397.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 16-16]
gi|437767192|ref|ZP_20835197.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 76-2651]
gi|437813429|ref|ZP_20841831.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 33944]
gi|437838820|ref|ZP_20846077.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. SARB17]
gi|437849308|ref|ZP_20847250.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 6.0562-1]
gi|437979936|ref|ZP_20853232.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 50-5646]
gi|438090169|ref|ZP_20860471.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 81-2625]
gi|438101100|ref|ZP_20864051.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 62-1976]
gi|438112361|ref|ZP_20868958.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 53-407]
gi|438139834|ref|ZP_20874859.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Pullorum str. ATCC 9120]
gi|440287234|ref|YP_007339999.1| cold shock protein [Enterobacteriaceae bacterium strain FGI 57]
gi|440764772|ref|ZP_20943796.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Agona str. SH11G1113]
gi|440768191|ref|ZP_20947164.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Agona str. SH08SF124]
gi|440774640|ref|ZP_20953527.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Agona str. SH10GFN094]
gi|442590273|ref|ZP_21009055.1| Cold shock protein CspC [Escherichia coli O10:K5(L):H4 str. ATCC
23506]
gi|442598234|ref|ZP_21016007.1| Cold shock protein CspC [Escherichia coli O5:K4(L):H4 str. ATCC
23502]
gi|442604488|ref|ZP_21019333.1| Cold shock protein CspC [Escherichia coli Nissle 1917]
gi|443617900|ref|YP_007381756.1| Cold shock-like protein cspC [Escherichia coli APEC O78]
gi|444350871|ref|YP_007387015.1| Cold shock protein CspC [Enterobacter aerogenes EA1509E]
gi|444925036|ref|ZP_21244442.1| cold shock-like protein CspC [Escherichia coli 09BKT078844]
gi|444930887|ref|ZP_21249973.1| cold shock-like protein CspC [Escherichia coli 99.0814]
gi|444936179|ref|ZP_21255017.1| cold shock-like protein CspC [Escherichia coli 99.0815]
gi|444941813|ref|ZP_21260387.1| cold shock-like protein CspC [Escherichia coli 99.0816]
gi|444947444|ref|ZP_21265799.1| cold shock-like protein CspC [Escherichia coli 99.0839]
gi|444953006|ref|ZP_21271147.1| cold shock-like protein CspC [Escherichia coli 99.0848]
gi|444958511|ref|ZP_21276412.1| cold shock-like protein CspC [Escherichia coli 99.1753]
gi|444963771|ref|ZP_21281430.1| cold shock-like protein CspC [Escherichia coli 99.1775]
gi|444969560|ref|ZP_21286967.1| cold shock-like protein CspC [Escherichia coli 99.1793]
gi|444974901|ref|ZP_21292083.1| cold shock-like protein CspC [Escherichia coli 99.1805]
gi|444980396|ref|ZP_21297339.1| cold shock-like protein CspC [Escherichia coli ATCC 700728]
gi|444985718|ref|ZP_21302533.1| cold shock-like protein CspC [Escherichia coli PA11]
gi|444991003|ref|ZP_21307685.1| cold shock-like protein CspC [Escherichia coli PA19]
gi|444996204|ref|ZP_21312743.1| cold shock-like protein CspC [Escherichia coli PA13]
gi|445001838|ref|ZP_21318256.1| cold shock-like protein CspC [Escherichia coli PA2]
gi|445007301|ref|ZP_21323584.1| cold shock-like protein CspC [Escherichia coli PA47]
gi|445012416|ref|ZP_21328557.1| cold shock-like protein CspC [Escherichia coli PA48]
gi|445018155|ref|ZP_21334150.1| cold shock-like protein CspC [Escherichia coli PA8]
gi|445023806|ref|ZP_21339664.1| cold shock-like protein CspC [Escherichia coli 7.1982]
gi|445029047|ref|ZP_21344759.1| cold shock-like protein CspC [Escherichia coli 99.1781]
gi|445034490|ref|ZP_21350052.1| cold shock-like protein CspC [Escherichia coli 99.1762]
gi|445040207|ref|ZP_21355613.1| cold shock-like protein CspC [Escherichia coli PA35]
gi|445045327|ref|ZP_21360619.1| cold shock-like protein CspC [Escherichia coli 3.4880]
gi|445050925|ref|ZP_21366019.1| cold shock-like protein CspC [Escherichia coli 95.0083]
gi|445056735|ref|ZP_21371624.1| cold shock-like protein CspC [Escherichia coli 99.0670]
gi|445129024|ref|ZP_21380572.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Gallinarum str. 9184]
gi|445141350|ref|ZP_21385372.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Dublin str. SL1438]
gi|445157639|ref|ZP_21392947.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Dublin str. HWS51]
gi|445209016|ref|ZP_21401452.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 20037]
gi|445221403|ref|ZP_21403094.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE10]
gi|445267716|ref|ZP_21410169.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 436]
gi|445330948|ref|ZP_21413997.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 18569]
gi|445349281|ref|ZP_21420060.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13-1]
gi|445364795|ref|ZP_21425035.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. PT23]
gi|449061438|ref|ZP_21738861.1| Cold shock-like protein cspC [Klebsiella pneumoniae hvKP1]
gi|450189375|ref|ZP_21890531.1| Cold shock-like protein cspC [Escherichia coli SEPT362]
gi|450215314|ref|ZP_21895534.1| Cold shock-like protein cspC [Escherichia coli O08]
gi|450244479|ref|ZP_21900330.1| Cold shock-like protein cspC [Escherichia coli S17]
gi|452119973|ref|YP_007470221.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Javiana str. CFSAN001992]
gi|452968426|ref|ZP_21966653.1| RNA chaperone/anti-terminator [Escherichia coli O157:H7 str.
EC4009]
gi|76364245|sp|P0A9Y6.2|CSPC_ECOLI RecName: Full=Cold shock-like protein CspC; Short=CSP-C
gi|76364246|sp|P0A9Y9.2|CSPC_SALTY RecName: Full=Cold shock-like protein CspC; Short=CSP-C
gi|85687551|sp|P0A9Y8.2|CSPC_ECO57 RecName: Full=Cold shock-like protein CspC; Short=CSP-C
gi|85687552|sp|P0A9Y7.2|CSPC_ECOL6 RecName: Full=Cold shock-like protein CspC; Short=CSP-C
gi|85687553|sp|P0A9Z0.2|CSPC_SALTI RecName: Full=Cold shock-like protein CspC; Short=CSP-C
gi|334305781|sp|E0J500.1|CSPC_ECOLW RecName: Full=Cold shock-like protein CspC; Short=CSP-C
gi|25296121|pir||AE0727 cold shock-like protein CspC [imported] - Salmonella enterica
subsp. enterica serovar Typhi (strain CT18)
gi|12515869|gb|AAG56812.1|AE005405_3 cold shock protein [Escherichia coli O157:H7 str. EDL933]
gi|26108488|gb|AAN80690.1|AE016761_265 Cold shock-like protein cspC [Escherichia coli CFT073]
gi|460698|dbj|BAA05854.1| CspC (MsmB) [Escherichia coli]
gi|479005|gb|AAA23619.1| cold-shock protein [Escherichia coli]
gi|1736467|dbj|BAA15634.1| stress protein, member of the CspA-family [Escherichia coli str.
K12 substr. W3110]
gi|1788126|gb|AAC74893.1| stress protein, member of the CspA-family [Escherichia coli str.
K-12 substr. MG1655]
gi|13362000|dbj|BAB35956.1| cold shock protein [Escherichia coli O157:H7 str. Sakai]
gi|16420370|gb|AAL20752.1| cold shock protein [Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2]
gi|16503023|emb|CAD05519.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Typhi]
gi|29137143|gb|AAO68707.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|30041170|gb|AAP16899.1| cold shock protein [Shigella flexneri 2a str. 2457T]
gi|56127501|gb|AAV77007.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|62128034|gb|AAX65737.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|73855341|gb|AAZ88048.1| cold shock protein [Shigella sonnei Ss046]
gi|81241359|gb|ABB62069.1| cold shock protein [Shigella dysenteriae Sd197]
gi|91072616|gb|ABE07497.1| cold shock protein CspC [Escherichia coli UTI89]
gi|110343532|gb|ABG69769.1| cold shock-like protein CspC [Escherichia coli 536]
gi|110614931|gb|ABF03598.1| cold shock protein [Shigella flexneri 5 str. 8401]
gi|145318915|gb|ABP61062.1| cold-shock DNA-binding protein family [Enterobacter sp. 638]
gi|150955736|gb|ABR77766.1| cold shock protein [Klebsiella pneumoniae subsp. pneumoniae MGH
78578]
gi|157066969|gb|ABV06224.1| cold shock protein CspC [Escherichia coli HS]
gi|157079377|gb|ABV19085.1| cold shock protein CspC [Escherichia coli E24377A]
gi|157082615|gb|ABV12293.1| hypothetical protein CKO_01152 [Citrobacter koseri ATCC BAA-895]
gi|160864386|gb|ABX21009.1| hypothetical protein SARI_01103 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-]
gi|161363016|gb|ABX66784.1| hypothetical protein SPAB_01376 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|169889313|gb|ACB03020.1| stress protein, member of the CspA-family [Escherichia coli str.
K-12 substr. DH10B]
gi|170120949|gb|EDS89880.1| cold shock protein CspC [Escherichia albertii TW07627]
gi|170121694|gb|EDS90625.1| cold shock protein CspC [Escherichia albertii TW07627]
gi|170520615|gb|ACB18793.1| cold shock protein CspC [Escherichia coli SMS-3-5]
gi|187429993|gb|ACD09267.1| cold shock protein CspC [Shigella boydii CDC 3083-94]
gi|188028706|emb|CAO96568.1| Cold shock protein [Erwinia tasmaniensis Et1/99]
gi|188488189|gb|EDU63292.1| cold shock DNA-binding protein [Escherichia coli 53638]
gi|189360403|gb|EDU78822.1| cold shock protein CspC [Escherichia coli O157:H7 str. EC4486]
gi|189364970|gb|EDU83386.1| cold shock protein CspC [Escherichia coli O157:H7 str. EC4501]
gi|189371934|gb|EDU90350.1| cold shock protein CspC [Escherichia coli O157:H7 str. EC869]
gi|190908097|gb|EDV67689.1| cold shock protein CspC [Escherichia coli F11]
gi|194405282|gb|ACF65504.1| cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|194405772|gb|ACF65991.1| cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|194411450|gb|EDX27798.1| cold shock protein CspC [Escherichia coli B171]
gi|194416827|gb|EDX32952.1| cold shock protein CspC [Shigella dysenteriae 1012]
gi|194457503|gb|EDX46342.1| cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|194710803|gb|ACF90024.1| cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|195634080|gb|EDX52432.1| cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|197093647|emb|CAR59117.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|197211666|gb|ACH49063.1| cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|197244050|gb|EDY26670.1| cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|197940464|gb|ACH77797.1| cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|199603563|gb|EDZ02109.1| cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|205272280|emb|CAR37158.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|205322083|gb|EDZ09922.1| cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|205328182|gb|EDZ14946.1| cold shock protein CspC [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|205331766|gb|EDZ18530.1| cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
gi|205339519|gb|EDZ26283.1| cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|205342665|gb|EDZ29429.1| cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|205350669|gb|EDZ37300.1| cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|206569872|gb|ACI11648.1| cold shock protein CspC [Klebsiella pneumoniae 342]
gi|206708460|emb|CAR32781.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|208725238|gb|EDZ74945.1| cold shock protein CspC [Escherichia coli O157:H7 str. EC4206]
gi|208730860|gb|EDZ79549.1| cold shock protein CspC [Escherichia coli O157:H7 str. EC4045]
gi|208739435|gb|EDZ87117.1| cold shock protein CspC [Escherichia coli O157:H7 str. EC4042]
gi|209158528|gb|ACI35961.1| cold shock protein CspC [Escherichia coli O157:H7 str. EC4115]
gi|209767848|gb|ACI82236.1| cold shock protein [Escherichia coli]
gi|209767850|gb|ACI82237.1| cold shock protein [Escherichia coli]
gi|209767852|gb|ACI82238.1| cold shock protein [Escherichia coli]
gi|209767854|gb|ACI82239.1| cold shock protein [Escherichia coli]
gi|209767856|gb|ACI82240.1| cold shock protein [Escherichia coli]
gi|209912447|dbj|BAG77521.1| cold shock protein [Escherichia coli SE11]
gi|215265107|emb|CAS09495.1| stress protein, member of the CspA-family [Escherichia coli
O127:H6 str. E2348/69]
gi|217318186|gb|EEC26613.1| cold shock protein CspC [Escherichia coli O157:H7 str. TW14588]
gi|218352118|emb|CAU97855.1| stress protein, member of the CspA-family [Escherichia coli
55989]
gi|218356159|emb|CAQ88776.1| stress protein, member of the CspA-family [Escherichia fergusonii
ATCC 35469]
gi|218361164|emb|CAQ98747.1| stress protein, member of the CspA-family [Escherichia coli IAI1]
gi|218365454|emb|CAR03181.1| stress protein, member of the CspA-family [Escherichia coli S88]
gi|218369594|emb|CAR17363.1| stress protein, member of the CspA-family [Escherichia coli
IAI39]
gi|218427323|emb|CAR08218.2| stress protein, member of the CspA-family [Escherichia coli ED1a]
gi|218432419|emb|CAR13310.1| stress protein, member of the CspA-family [Escherichia coli
UMN026]
gi|222033570|emb|CAP76311.1| Cold shock-like protein cspC [Escherichia coli LF82]
gi|224468200|gb|ACN46030.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|224963876|emb|CAX55379.1| Cold shock-like protein CspC [Erwinia pyrifoliae Ep1/96]
gi|226900530|gb|EEH86789.1| cold shock protein [Escherichia sp. 3_2_53FAA]
gi|226907399|gb|EEH93317.1| cold shock-like protein cspC [Citrobacter sp. 30_2]
gi|227837324|gb|EEJ47790.1| cold shock family protein CspC [Escherichia coli 83972]
gi|238547716|dbj|BAH64067.1| cold shock-like protein [Klebsiella pneumoniae subsp. pneumoniae
NTUH-K2044]
gi|238863580|gb|ACR65578.1| stress protein, member of the CspA-family [Escherichia coli
BW2952]
gi|242377543|emb|CAQ32298.1| stress protein, member of the CspA family; predicted DNA-binding
transcriptional regulator [Escherichia coli BL21(DE3)]
gi|253324267|gb|ACT28869.1| cold-shock DNA-binding domain protein [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253973783|gb|ACT39454.1| stress protein, member of the CspA-family [Escherichia coli B
str. REL606]
gi|253977977|gb|ACT43647.1| stress protein, member of the CspA-family [Escherichia coli
BL21(DE3)]
gi|254592846|gb|ACT72207.1| stress protein, member of the CspA-family [Escherichia coli
O157:H7 str. TW14359]
gi|257754332|dbj|BAI25834.1| stress protein CspC [Escherichia coli O26:H11 str. 11368]
gi|257759315|dbj|BAI30812.1| stress protein CspC [Escherichia coli O103:H2 str. 12009]
gi|257764699|dbj|BAI36194.1| stress protein CspC [Escherichia coli O111:H- str. 11128]
gi|259040741|gb|EEW41829.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|260449056|gb|ACX39478.1| cold-shock DNA-binding domain protein [Escherichia coli DH1]
gi|261247022|emb|CBG24839.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|267993798|gb|ACY88683.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Typhimurium str. 14028S]
gi|281178889|dbj|BAI55219.1| cold shock protein [Escherichia coli SE15]
gi|281600822|gb|ADA73806.1| Cold shock-like protein cspC [Shigella flexneri 2002017]
gi|283478185|emb|CAY74101.1| Cold shock-like protein cspC (CSP-C) [Erwinia pyrifoliae DSM
12163]
gi|284921742|emb|CBG34814.1| cold shock-like protein CspC [Escherichia coli 042]
gi|288317723|gb|EFC56661.1| conserved domain protein [Enterobacter cancerogenus ATCC 35316]
gi|288889425|gb|ADC57743.1| cold-shock DNA-binding domain protein [Klebsiella variicola
At-22]
gi|289152142|gb|ADC84001.1| cold shock-like protein [Escherichia coli]
gi|289152144|gb|ADC84002.1| cold shock-like protein [Escherichia coli]
gi|289152146|gb|ADC84003.1| cold shock-like protein [Escherichia coli]
gi|289152148|gb|ADC84004.1| cold shock-like protein [Escherichia coli]
gi|289152150|gb|ADC84005.1| cold shock-like protein [Escherichia coli]
gi|289152152|gb|ADC84006.1| cold shock-like protein [Escherichia coli]
gi|289152154|gb|ADC84007.1| cold shock-like protein [Escherichia coli]
gi|289152156|gb|ADC84008.1| cold shock-like protein [Escherichia coli]
gi|289152160|gb|ADC84010.1| cold shock-like protein [Escherichia coli]
gi|289152162|gb|ADC84011.1| cold shock-like protein [Escherichia coli]
gi|289152164|gb|ADC84012.1| cold shock-like protein [Escherichia coli]
gi|289152166|gb|ADC84013.1| cold shock-like protein [Escherichia coli]
gi|289152168|gb|ADC84014.1| cold shock-like protein [Escherichia coli]
gi|289152170|gb|ADC84015.1| cold shock-like protein [Escherichia coli]
gi|289152172|gb|ADC84016.1| cold shock-like protein [Escherichia coli]
gi|289152174|gb|ADC84017.1| cold shock-like protein [Escherichia coli]
gi|289152176|gb|ADC84018.1| cold shock-like protein [Escherichia coli]
gi|289152178|gb|ADC84019.1| cold shock-like protein [Escherichia coli]
gi|289152180|gb|ADC84020.1| cold shock-like protein [Escherichia coli]
gi|289152182|gb|ADC84021.1| cold shock-like protein [Escherichia coli]
gi|289152184|gb|ADC84022.1| cold shock-like protein [Escherichia coli]
gi|289152186|gb|ADC84023.1| cold shock-like protein [Escherichia coli]
gi|289152188|gb|ADC84024.1| cold shock-like protein [Escherichia coli]
gi|289152190|gb|ADC84025.1| cold shock-like protein [Escherichia coli]
gi|289152192|gb|ADC84026.1| cold shock-like protein [Escherichia coli]
gi|289152194|gb|ADC84027.1| cold shock-like protein [Escherichia coli]
gi|289152196|gb|ADC84028.1| cold shock-like protein [Escherichia coli]
gi|289152198|gb|ADC84029.1| cold shock-like protein [Escherichia coli]
gi|289152200|gb|ADC84030.1| cold shock-like protein [Escherichia coli]
gi|289152202|gb|ADC84031.1| cold shock-like protein [Escherichia coli]
gi|289778242|gb|EFD86239.1| cold shock protein CspG [Klebsiella sp. 1_1_55]
gi|290762877|gb|ADD56838.1| hypothetical protein G2583_2272 [Escherichia coli O55:H7 str.
CB9615]
gi|291072468|gb|EFE10577.1| conserved domain protein [Citrobacter youngae ATCC 29220]
gi|291199525|emb|CBJ46642.1| cold shock-like protein [Erwinia amylovora ATCC 49946]
gi|291323025|gb|EFE62453.1| cold shock protein CspG [Escherichia coli B088]
gi|291427527|gb|EFF00554.1| cold shock protein CspG [Escherichia coli FVEC1412]
gi|291432786|gb|EFF05765.1| cold shock protein CspG [Escherichia coli B185]
gi|291470599|gb|EFF13083.1| cold shock protein cspC [Escherichia coli B354]
gi|291553921|emb|CBA20966.1| Cold shock-like protein cspC (CSP-C) [Erwinia amylovora CFBP1430]
gi|294492772|gb|ADE91528.1| cold shock protein CspC [Escherichia coli IHE3034]
gi|295056302|gb|ADF61040.1| Cold shock-like protein cspC [Enterobacter cloacae subsp. cloacae
ATCC 13047]
gi|295095573|emb|CBK84663.1| Cold shock proteins [Enterobacter cloacae subsp. cloacae NCTC
9394]
gi|298278403|gb|EFI19917.1| cold shock-like protein cspC [Escherichia coli FVEC1302]
gi|299062874|emb|CAX59994.1| cold shock protein [Erwinia billingiae Eb661]
gi|299881920|gb|EFI90131.1| cold shock protein CspE [Escherichia coli MS 196-1]
gi|300297519|gb|EFJ53904.1| cold shock protein CspE [Escherichia coli MS 185-1]
gi|300307364|gb|EFJ61884.1| cold shock protein CspE [Escherichia coli MS 200-1]
gi|300316550|gb|EFJ66334.1| cold shock protein CspE [Escherichia coli MS 175-1]
gi|300357308|gb|EFJ73178.1| cold shock protein CspE [Escherichia coli MS 198-1]
gi|300395440|gb|EFJ78978.1| cold shock protein CspE [Escherichia coli MS 69-1]
gi|300403385|gb|EFJ86923.1| cold shock protein CspE [Escherichia coli MS 84-1]
gi|300406355|gb|EFJ89893.1| cold shock protein CspE [Escherichia coli MS 45-1]
gi|300415174|gb|EFJ98484.1| cold shock protein CspE [Escherichia coli MS 115-1]
gi|300418941|gb|EFK02252.1| cold shock protein CspE [Escherichia coli MS 182-1]
gi|300449309|gb|EFK12929.1| cold shock protein CspE [Escherichia coli MS 116-1]
gi|300456260|gb|EFK19753.1| cold shock protein CspE [Escherichia coli MS 21-1]
gi|300463140|gb|EFK26633.1| cold shock protein CspE [Escherichia coli MS 187-1]
gi|300522015|gb|EFK43084.1| cold shock protein CspE [Escherichia coli MS 119-7]
gi|300530979|gb|EFK52041.1| cold shock protein CspE [Escherichia coli MS 107-1]
gi|300838848|gb|EFK66608.1| cold shock protein CspE [Escherichia coli MS 124-1]
gi|300845833|gb|EFK73593.1| cold shock protein CspE [Escherichia coli MS 78-1]
gi|301076094|gb|EFK90900.1| cold shock protein CspE [Escherichia coli MS 146-1]
gi|301158361|emb|CBW17860.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|305851578|gb|EFM52031.1| Cold shock-like protein cspC [Escherichia coli NC101]
gi|306906236|gb|EFN36753.1| cold-shock DNA-binding domain protein [Escherichia coli W]
gi|307553841|gb|ADN46616.1| cold shock-like protein CspC [Escherichia coli ABU 83972]
gi|307626698|gb|ADN71002.1| Cold shock-like protein cspC [Escherichia coli UM146]
gi|308122106|gb|EFO59368.1| cold shock protein CspE [Escherichia coli MS 145-7]
gi|308748473|gb|ADO48225.1| cold-shock DNA-binding domain protein [Enterobacter cloacae SCF1]
gi|308923651|gb|EFP69154.1| cold shock-like protein cspI [Shigella dysenteriae 1617]
gi|310338145|gb|EFQ03234.1| cold shock-like protein cspI [Escherichia coli 1827-70]
gi|310767829|gb|ADP12779.1| Cold shock-like protein cspC [Erwinia sp. Ejp617]
gi|312172634|emb|CBX80890.1| Cold shock-like protein cspC (CSP-C) [Erwinia amylovora ATCC
BAA-2158]
gi|312288486|gb|EFR16388.1| cold shock-like protein cspI [Escherichia coli 2362-75]
gi|312912826|dbj|BAJ36800.1| cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|312946419|gb|ADR27246.1| cold shock-like protein CspC [Escherichia coli O83:H1 str. NRG
857C]
gi|313649142|gb|EFS13576.1| cold shock-like protein cspI [Shigella flexneri 2a str. 2457T]
gi|315061126|gb|ADT75453.1| stress protein, member of the CspA-family [Escherichia coli W]
gi|315136465|dbj|BAJ43624.1| cold shock-like protein cspC [Escherichia coli DH1]
gi|315257366|gb|EFU37334.1| cold shock protein CspE [Escherichia coli MS 85-1]
gi|315286527|gb|EFU45962.1| cold shock protein CspE [Escherichia coli MS 110-3]
gi|315290383|gb|EFU49759.1| cold shock protein CspE [Escherichia coli MS 153-1]
gi|315299954|gb|EFU59192.1| cold shock protein CspE [Escherichia coli MS 16-3]
gi|316950076|gb|ADU69551.1| cold-shock DNA-binding domain protein [Pantoea sp. At-9b]
gi|320085656|emb|CBY95434.1| Cold shock-like protein cspE CSP-E [Salmonella enterica subsp.
enterica serovar Weltevreden str. 2007-60-3289-1]
gi|320173186|gb|EFW48398.1| Cold shock protein CspC [Shigella dysenteriae CDC 74-1112]
gi|320181137|gb|EFW56056.1| Cold shock protein CspC [Shigella boydii ATCC 9905]
gi|320185016|gb|EFW59797.1| Cold shock protein CspC [Shigella flexneri CDC 796-83]
gi|320188522|gb|EFW63184.1| Cold shock protein CspC [Escherichia coli O157:H7 str. EC1212]
gi|320194464|gb|EFW69095.1| Cold shock protein CspC [Escherichia coli WV_060327]
gi|320198003|gb|EFW72611.1| Cold shock protein CspC [Escherichia coli EC4100B]
gi|320641674|gb|EFX11062.1| cold shock-like protein cspc [Escherichia coli O157:H7 str.
G5101]
gi|320647033|gb|EFX15866.1| cold shock-like protein cspc [Escherichia coli O157:H- str.
493-89]
gi|320652316|gb|EFX20614.1| cold shock-like protein cspc [Escherichia coli O157:H- str. H
2687]
gi|320657918|gb|EFX25680.1| cold shock-like protein cspc [Escherichia coli O55:H7 str.
3256-97 TW 07815]
gi|320658491|gb|EFX26185.1| cold shock-like protein cspc [Escherichia coli O55:H7 str. USDA
5905]
gi|320668389|gb|EFX35216.1| cold shock-like protein cspc [Escherichia coli O157:H7 str.
LSU-61]
gi|321224470|gb|EFX49533.1| Cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Typhimurium str. TN061786]
gi|322616832|gb|EFY13740.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. 315996572]
gi|322618071|gb|EFY14963.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-1]
gi|322625742|gb|EFY22561.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-3]
gi|322626192|gb|EFY23002.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-4]
gi|322633798|gb|EFY30538.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-1]
gi|322638952|gb|EFY35645.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-2]
gi|322640770|gb|EFY37420.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. 531954]
gi|322644157|gb|EFY40702.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. NC_MB110209-0054]
gi|322649229|gb|EFY45667.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. OH_2009072675]
gi|322655388|gb|EFY51696.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. CASC_09SCPH15965]
gi|322660856|gb|EFY57087.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. 19N]
gi|322662847|gb|EFY59054.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. 81038-01]
gi|322668031|gb|EFY64190.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. MD_MDA09249507]
gi|322674207|gb|EFY70301.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. 414877]
gi|322675438|gb|EFY71512.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. 366867]
gi|322683147|gb|EFY79163.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. 413180]
gi|322686841|gb|EFY82819.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. 446600]
gi|322714876|gb|EFZ06447.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SCSA50]
gi|323130112|gb|ADX17542.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Typhimurium str. ST4/74]
gi|323152935|gb|EFZ39204.1| cold shock-like protein cspI [Escherichia coli EPECa14]
gi|323175099|gb|EFZ60713.1| cold shock-like protein cspI [Escherichia coli LT-68]
gi|323180603|gb|EFZ66148.1| cold shock-like protein cspI [Escherichia coli OK1180]
gi|323186429|gb|EFZ71777.1| cold shock-like protein cspI [Escherichia coli OK1357]
gi|323186827|gb|EFZ72146.1| cold shock-like protein cspI [Escherichia coli RN587/1]
gi|323195267|gb|EFZ80447.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. 609458-1]
gi|323199160|gb|EFZ84255.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. 556150-1]
gi|323203311|gb|EFZ88338.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. 609460]
gi|323213768|gb|EFZ98550.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. 556152]
gi|323217399|gb|EGA02118.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. MB101509-0077]
gi|323223230|gb|EGA07571.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. MB102109-0047]
gi|323224674|gb|EGA08947.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. MB110209-0055]
gi|323231422|gb|EGA15535.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. MB111609-0052]
gi|323235862|gb|EGA19941.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009083312]
gi|323240431|gb|EGA24474.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009085258]
gi|323245324|gb|EGA29324.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. 315731156]
gi|323246691|gb|EGA30663.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2009159199]
gi|323253546|gb|EGA37374.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008282]
gi|323258076|gb|EGA41754.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008283]
gi|323259373|gb|EGA43012.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008284]
gi|323266797|gb|EGA50283.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008285]
gi|323269003|gb|EGA52459.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008287]
gi|323378298|gb|ADX50566.1| cold-shock DNA-binding domain protein [Escherichia coli KO11FL]
gi|323937081|gb|EGB33361.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli E1520]
gi|323940511|gb|EGB36702.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli E482]
gi|323948292|gb|EGB44280.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli H120]
gi|323952324|gb|EGB48197.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli H252]
gi|323956452|gb|EGB52194.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli H263]
gi|323961877|gb|EGB57476.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli H489]
gi|323968590|gb|EGB63996.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli M863]
gi|323972670|gb|EGB67873.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli TA007]
gi|323977994|gb|EGB73080.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli TW10509]
gi|324007189|gb|EGB76408.1| cold shock protein CspE [Escherichia coli MS 57-2]
gi|324011600|gb|EGB80819.1| cold shock protein CspE [Escherichia coli MS 60-1]
gi|324018044|gb|EGB87263.1| cold shock protein CspE [Escherichia coli MS 117-3]
gi|324113559|gb|EGC07534.1| cold-shock DNA-binding domain-containing protein [Escherichia
fergusonii B253]
gi|324118883|gb|EGC12772.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli E1167]
gi|325497031|gb|EGC94890.1| cold shock-like protein CspC [Escherichia fergusonii ECD227]
gi|326342201|gb|EGD65982.1| Cold shock protein CspC [Escherichia coli O157:H7 str. 1044]
gi|326343751|gb|EGD67513.1| Cold shock protein CspC [Escherichia coli O157:H7 str. 1125]
gi|326627557|gb|EGE33900.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Gallinarum str. SG9]
gi|327252944|gb|EGE64598.1| cold shock-like protein cspI [Escherichia coli STEC_7v]
gi|328537175|gb|EGF63445.1| cold shock-like protein CspE [Klebsiella sp. MS 92-3]
gi|330911630|gb|EGH40140.1| cold shock protein CspC [Escherichia coli AA86]
gi|331039231|gb|EGI11451.1| conserved domain protein [Escherichia coli H736]
gi|331044102|gb|EGI16238.1| conserved domain protein [Escherichia coli M605]
gi|331049326|gb|EGI21398.1| conserved domain protein [Escherichia coli M718]
gi|331056115|gb|EGI28124.1| conserved domain protein [Escherichia coli TA206]
gi|331059112|gb|EGI31089.1| conserved domain protein [Escherichia coli TA143]
gi|331063708|gb|EGI35619.1| conserved domain protein [Escherichia coli TA271]
gi|331069553|gb|EGI40940.1| conserved domain protein [Escherichia coli TA280]
gi|331074160|gb|EGI45480.1| conserved domain protein [Escherichia coli H591]
gi|331079540|gb|EGI50737.1| conserved domain protein [Escherichia coli H299]
gi|332089944|gb|EGI95044.1| cold shock-like protein cspI [Shigella boydii 5216-82]
gi|332093283|gb|EGI98342.1| cold shock-like protein cspI [Shigella dysenteriae 155-74]
gi|332096604|gb|EGJ01598.1| cold shock-like protein cspI [Shigella boydii 3594-74]
gi|332101377|gb|EGJ04723.1| cold shock protein [Shigella sp. D9]
gi|332343548|gb|AEE56882.1| cold shock-like protein CspI [Escherichia coli UMNK88]
gi|332760591|gb|EGJ90880.1| cold shock-like protein cspI [Shigella flexneri 2747-71]
gi|332762433|gb|EGJ92698.1| cold shock-like protein cspI [Shigella flexneri 4343-70]
gi|332762911|gb|EGJ93165.1| cold shock-like protein cspI [Shigella flexneri K-671]
gi|332767108|gb|EGJ97303.1| cold shock protein [Shigella flexneri 2930-71]
gi|332988724|gb|AEF07707.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Typhimurium str. UK-1]
gi|333003646|gb|EGK23182.1| cold shock-like protein cspI [Shigella flexneri VA-6]
gi|333004280|gb|EGK23811.1| cold shock-like protein cspI [Shigella flexneri K-218]
gi|333006745|gb|EGK26242.1| cold shock-like protein cspI [Shigella flexneri K-272]
gi|333018379|gb|EGK37678.1| cold shock-like protein cspI [Shigella flexneri K-304]
gi|333018661|gb|EGK37954.1| cold shock-like protein cspI [Shigella flexneri K-227]
gi|333388734|gb|EGK59907.1| CspA family transcriptional regulator [Enterobacter hormaechei
ATCC 49162]
gi|333969891|gb|AEG36696.1| Cold shock protein [Escherichia coli NA114]
gi|334737052|gb|AEG99427.1| Cold shock-like protein cspC [Enterobacter aerogenes KCTC 2190]
gi|335575551|gb|EGM61828.1| cold shock protein [Shigella flexneri J1713]
gi|338770137|gb|EGP24904.1| Cold shock-like protein CspC [Escherichia coli PCN033]
gi|339415189|gb|AEJ56861.1| cold shock-like protein cspI (CPS-I) [Escherichia coli UMNF18]
gi|339513025|emb|CCC30769.1| cold shock-like protein CspC [Salmonella bongori NCTC 12419]
gi|339762604|gb|AEJ98824.1| Cold shock-like protein cspC [Klebsiella pneumoniae KCTC 2242]
gi|340733942|gb|EGR63072.1| Cold shock-like protein cspC [Escherichia coli O104:H4 str.
01-09591]
gi|340740239|gb|EGR74464.1| Cold shock-like protein cspC [Escherichia coli O104:H4 str.
LB226692]
gi|341918589|gb|EGT68202.1| cspC [Escherichia coli O104:H4 str. C227-11]
gi|342364822|gb|EGU28921.1| Cold shock-like protein cspC [Escherichia coli XH140A]
gi|342930820|gb|EGU99542.1| hypothetical protein HMPREF9439_00538 [Escherichia coli MS 79-10]
gi|344195527|gb|EGV49596.1| Cold shock-like protein cspC [Escherichia coli XH001]
gi|345093625|gb|AEN65261.1| cold-shock DNA-binding domain protein [Enterobacter asburiae
LF7a]
gi|345338202|gb|EGW70633.1| cold shock-like protein cspI [Escherichia coli STEC_C165-02]
gi|345339922|gb|EGW72347.1| cold shock-like protein cspI [Escherichia coli STEC_B2F1]
gi|345350080|gb|EGW82355.1| cold shock-like protein cspI [Escherichia coli STEC_94C]
gi|345355263|gb|EGW87474.1| cold shock-like protein cspI [Escherichia coli 3030-1]
gi|345358980|gb|EGW91159.1| cold shock-like protein cspI [Escherichia coli STEC_DG131-3]
gi|345362754|gb|EGW94899.1| cold shock-like protein cspI [Escherichia coli STEC_EH250]
gi|345374209|gb|EGX06162.1| cold shock-like protein cspI [Escherichia coli STEC_MHI813]
gi|345376754|gb|EGX08687.1| cold shock-like protein cspI [Escherichia coli G58-1]
gi|345379467|gb|EGX11379.1| cold shock-like protein cspI [Escherichia coli STEC_H.1.8]
gi|345388229|gb|EGX18040.1| cold shock-like protein cspI [Escherichia coli STEC_S1191]
gi|345393756|gb|EGX23525.1| cold shock-like protein cspI [Escherichia coli TX1999]
gi|349738187|gb|AEQ12893.1| stress protein, member of the CspA-family [Escherichia coli O7:K1
str. CE10]
gi|353075710|gb|EHB41470.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Infantis str. SARB27]
gi|353574782|gb|EHC37713.1| Cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Adelaide str. A4-669]
gi|353575130|gb|EHC37955.1| Cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Gaminara str. A4-567]
gi|353579135|gb|EHC40768.1| Cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Alachua str. R6-377]
gi|353593632|gb|EHC51343.1| Cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Give str. S5-487]
gi|353594884|gb|EHC52265.1| Cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Hvittingfoss str. A4-620]
gi|353604139|gb|EHC59014.1| Cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Inverness str. R8-3668]
gi|353618702|gb|EHC69309.1| Cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Minnesota str. A4-603]
gi|353618886|gb|EHC69447.1| Cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Johannesburg str. S5-703]
gi|353623629|gb|EHC72863.1| Cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Mississippi str. A4-633]
gi|353633490|gb|EHC80282.1| Cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Montevideo str. S5-403]
gi|353646735|gb|EHC90065.1| Cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Rubislaw str. A4-653]
gi|353646865|gb|EHC90153.1| Cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Senftenberg str. A4-543]
gi|353650502|gb|EHC92847.1| Cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Uganda str. R8-3404]
gi|353665742|gb|EHD03769.1| Cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Wandsworth str. A4-580]
gi|353666624|gb|EHD04375.1| Cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Urbana str. R8-2977]
gi|354861591|gb|EHF22029.1| cold shock-like protein CspC [Escherichia coli O104:H4 str.
C236-11]
gi|354868944|gb|EHF29356.1| cold shock-like protein CspC [Escherichia coli O104:H4 str.
C227-11]
gi|354871040|gb|EHF31440.1| cold shock-like protein CspC [Escherichia coli O104:H4 str.
04-8351]
gi|354872867|gb|EHF33244.1| cold shock-like protein CspC [Escherichia coli O104:H4 str.
09-7901]
gi|354881440|gb|EHF41770.1| cold shock-like protein CspC [Escherichia coli O104:H4 str.
11-3677]
gi|354891158|gb|EHF51393.1| cold shock-like protein CspC [Escherichia coli O104:H4 str.
11-4404]
gi|354893991|gb|EHF54188.1| cold shock-like protein CspC [Escherichia coli O104:H4 str.
11-4522]
gi|354896138|gb|EHF56314.1| cold shock-like protein CspC [Escherichia coli O104:H4 str.
11-4632 C1]
gi|354899113|gb|EHF59263.1| cold shock-like protein CspC [Escherichia coli O104:H4 str.
11-4623]
gi|354900848|gb|EHF60980.1| cold shock-like protein CspC [Escherichia coli O104:H4 str.
11-4632 C2]
gi|354913877|gb|EHF73865.1| cold shock-like protein CspC [Escherichia coli O104:H4 str.
11-4632 C5]
gi|354917606|gb|EHF77569.1| cold shock-like protein CspC [Escherichia coli O104:H4 str.
11-4632 C3]
gi|354919547|gb|EHF79490.1| cold shock-like protein CspC [Escherichia coli O104:H4 str.
11-4632 C4]
gi|354988336|gb|AER32460.1| Cold shock-like protein cspC [Pantoea ananatis PA13]
gi|355351936|gb|EHG01123.1| cold shock-like protein cspc [Escherichia coli cloneA_i1]
gi|355420420|gb|AER84617.1| cold shock-like protein CspC [Escherichia coli str. 'clone D i2']
gi|355425340|gb|AER89536.1| cold shock-like protein CspC [Escherichia coli str. 'clone D
i14']
gi|357205954|gb|AET54000.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Gallinarum/pullorum str. RKS5078]
gi|357958052|gb|EHJ82830.1| Cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Baildon str. R6-199]
gi|359332300|dbj|BAL38747.1| stress protein, member of the CspA-family [Escherichia coli str.
K-12 substr. MDS42]
gi|363554176|gb|EHL38413.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. LQC 10]
gi|363557191|gb|EHL41398.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB31]
gi|363566355|gb|EHL50372.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB30]
gi|363568754|gb|EHL52730.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. 29N]
gi|363570023|gb|EHL53962.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. ATCC BAA710]
gi|363572872|gb|EHL56760.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. 42N]
gi|363575243|gb|EHL59101.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. 4441 H]
gi|363641237|gb|EHL80637.1| cold shock-like protein CspC [Citrobacter freundii 4_7_47CFAA]
gi|363655954|gb|EHL94741.1| cold shock-like protein CspC [Klebsiella sp. 4_1_44FAA]
gi|364518924|gb|AEW62052.1| Cold shock-like protein cspC [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|364569834|gb|EHM47456.1| cold shock-like protein CspE [Yokenella regensburgei ATCC 43003]
gi|365186464|emb|CCF09414.1| cold shock-like protein CspC [Pantoea ananatis LMG 5342]
gi|365911001|gb|AEX06454.1| Cold shock-like protein cspC [Klebsiella oxytoca KCTC 1686]
gi|366059928|gb|EHN24195.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. 80959-06]
gi|366063820|gb|EHN28031.1| cold shock-like protein cspc [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035318]
gi|366073103|gb|EHN37180.1| cold shock-like protein cspc [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035278]
gi|366075419|gb|EHN39476.1| cold shock-like protein cspc [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035320]
gi|366075750|gb|EHN39802.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035321]
gi|366078154|gb|EHN42159.1| cold shock-like protein cspc [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035327]
gi|366082286|gb|EHN46223.1| cold shock-like protein cspc [Salmonella enterica subsp. enterica
serovar Pomona str. ATCC 10729]
gi|366827399|gb|EHN54305.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. 507440-20]
gi|371597147|gb|EHN85972.1| cold shock-like protein CspC [Escherichia coli TA124]
gi|371599116|gb|EHN87906.1| cold shock-like protein CspC [Escherichia coli H494]
gi|371611556|gb|EHO00078.1| cold shock-like protein cspC [Escherichia coli E101]
gi|371611971|gb|EHO00489.1| cold shock-like protein cspC [Escherichia coli B093]
gi|371614184|gb|EHO02669.1| cold shock-like protein cspC [Escherichia coli H397]
gi|372204293|gb|EHP17821.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008286]
gi|373243741|gb|EHP63240.1| cold shock-like protein CspC [Escherichia coli 4_1_47FAA]
gi|374353070|gb|AEZ44831.1| Cold shock-like protein cspE [Salmonella enterica subsp. enterica
serovar Typhi str. P-stx-12]
gi|374359063|gb|AEZ40770.1| Cold shock-like protein cspC [Escherichia coli O55:H7 str.
RM12579]
gi|375323576|gb|EHS69282.1| Cold shock-like protein cspC [Escherichia coli O157:H43 str. T22]
gi|376383215|gb|EHS95943.1| cold shock-like protein CspC [Klebsiella oxytoca 10-5243]
gi|376383856|gb|EHS96583.1| cold shock-like protein CspC [Klebsiella oxytoca 10-5245]
gi|376385271|gb|EHS97992.1| cold shock-like protein CspC [Klebsiella oxytoca 10-5242]
gi|376395537|gb|EHT08183.1| cold shock-like protein CspC [Klebsiella oxytoca 10-5246]
gi|376399928|gb|EHT12541.1| cold shock-like protein CspC [Klebsiella oxytoca 10-5250]
gi|377542190|dbj|GAB50307.1| cold shock-like protein CspC [Escherichia hermannii NBRC 105704]
gi|377817532|gb|EHU00627.1| stress protein, member of the CspA-family [Pantoea stewartii
subsp. stewartii DC283]
gi|377845353|gb|EHU10375.1| cold shock protein CspC [Escherichia coli DEC1A]
gi|377846382|gb|EHU11394.1| cold shock protein CspC [Escherichia coli DEC1C]
gi|377850148|gb|EHU15116.1| cold shock protein CspC [Escherichia coli DEC1B]
gi|377858639|gb|EHU23478.1| cold shock-like protein CspC [Escherichia coli DEC1D]
gi|377862212|gb|EHU27025.1| cold shock protein CspC [Escherichia coli DEC1E]
gi|377865607|gb|EHU30398.1| cold shock-like protein CspC [Escherichia coli DEC2A]
gi|377876117|gb|EHU40725.1| cold shock-like protein CspC [Escherichia coli DEC2B]
gi|377880212|gb|EHU44783.1| cold shock protein CspC [Escherichia coli DEC2C]
gi|377881735|gb|EHU46292.1| cold shock protein CspC [Escherichia coli DEC2D]
gi|377894021|gb|EHU58446.1| cold shock protein CspC [Escherichia coli DEC2E]
gi|377894983|gb|EHU59396.1| cold shock protein CspC [Escherichia coli DEC3A]
gi|377895683|gb|EHU60094.1| cold shock protein CspC [Escherichia coli DEC3B]
gi|377906640|gb|EHU70882.1| cold shock protein CspC [Escherichia coli DEC3C]
gi|377911975|gb|EHU76140.1| cold shock protein CspC [Escherichia coli DEC3D]
gi|377914699|gb|EHU78821.1| cold shock protein CspC [Escherichia coli DEC3E]
gi|377923782|gb|EHU87743.1| cold shock protein CspC [Escherichia coli DEC3F]
gi|377928357|gb|EHU92268.1| cold shock protein CspC [Escherichia coli DEC4A]
gi|377932929|gb|EHU96775.1| cold shock protein CspC [Escherichia coli DEC4B]
gi|377943963|gb|EHV07672.1| cold shock protein CspC [Escherichia coli DEC4C]
gi|377944510|gb|EHV08212.1| cold shock protein CspC [Escherichia coli DEC4D]
gi|377949946|gb|EHV13577.1| cold shock protein CspC [Escherichia coli DEC4E]
gi|377958892|gb|EHV22404.1| cold shock protein CspC [Escherichia coli DEC4F]
gi|377962169|gb|EHV25632.1| cold shock protein CspC [Escherichia coli DEC5A]
gi|377968847|gb|EHV32238.1| cold shock protein CspC [Escherichia coli DEC5B]
gi|377977161|gb|EHV40462.1| cold shock protein CspC [Escherichia coli DEC5D]
gi|377985772|gb|EHV48984.1| cold shock-like protein CspC [Escherichia coli DEC5E]
gi|377994973|gb|EHV58094.1| cold shock protein CspC [Escherichia coli DEC6B]
gi|377996832|gb|EHV59940.1| cold shock-like protein CspC [Escherichia coli DEC6A]
gi|377998381|gb|EHV61473.1| cold shock-like protein CspC [Escherichia coli DEC6C]
gi|378009366|gb|EHV72322.1| cold shock-like protein CspC [Escherichia coli DEC6D]
gi|378010625|gb|EHV73570.1| cold shock protein CspC [Escherichia coli DEC6E]
gi|378016612|gb|EHV79492.1| cold shock-like protein CspC [Escherichia coli DEC7A]
gi|378024398|gb|EHV87052.1| cold shock protein CspC [Escherichia coli DEC7C]
gi|378030170|gb|EHV92774.1| cold shock protein CspC [Escherichia coli DEC7D]
gi|378034863|gb|EHV97427.1| cold shock protein CspC [Escherichia coli DEC7B]
gi|378039694|gb|EHW02182.1| cold shock-like protein CspC [Escherichia coli DEC7E]
gi|378048519|gb|EHW10873.1| cold shock-like protein CspC [Escherichia coli DEC8A]
gi|378051325|gb|EHW13642.1| cold shock protein CspC [Escherichia coli DEC8B]
gi|378055551|gb|EHW17813.1| cold shock protein CspC [Escherichia coli DEC8C]
gi|378063578|gb|EHW25746.1| cold shock protein CspC [Escherichia coli DEC8D]
gi|378067463|gb|EHW29585.1| cold shock protein CspC [Escherichia coli DEC8E]
gi|378075989|gb|EHW38002.1| cold shock protein CspC [Escherichia coli DEC9A]
gi|378079002|gb|EHW40981.1| cold shock protein CspC [Escherichia coli DEC9B]
gi|378084571|gb|EHW46473.1| cold shock protein CspC [Escherichia coli DEC9C]
gi|378092067|gb|EHW53894.1| cold shock protein CspC [Escherichia coli DEC9D]
gi|378096655|gb|EHW58425.1| cold shock protein CspC [Escherichia coli DEC9E]
gi|378102078|gb|EHW63762.1| cold shock protein CspC [Escherichia coli DEC10A]
gi|378108573|gb|EHW70186.1| cold shock protein CspC [Escherichia coli DEC10B]
gi|378112973|gb|EHW74546.1| cold shock protein CspC [Escherichia coli DEC10C]
gi|378118127|gb|EHW79636.1| cold shock protein CspC [Escherichia coli DEC10D]
gi|378129198|gb|EHW90570.1| cold shock protein CspC [Escherichia coli DEC10E]
gi|378131647|gb|EHW93004.1| cold shock protein CspC [Escherichia coli DEC11A]
gi|378134042|gb|EHW95372.1| cold shock protein CspC [Escherichia coli DEC10F]
gi|378142137|gb|EHX03339.1| cold shock protein CspC [Escherichia coli DEC11B]
gi|378149900|gb|EHX11020.1| cold shock-like protein CspC [Escherichia coli DEC11D]
gi|378151748|gb|EHX12855.1| cold shock-like protein CspC [Escherichia coli DEC11C]
gi|378158591|gb|EHX19609.1| cold shock-like protein CspC [Escherichia coli DEC11E]
gi|378167339|gb|EHX28252.1| cold shock protein CspC [Escherichia coli DEC12B]
gi|378170832|gb|EHX31707.1| cold shock-like protein CspC [Escherichia coli DEC12A]
gi|378172240|gb|EHX33097.1| cold shock-like protein CspC [Escherichia coli DEC12C]
gi|378186729|gb|EHX47352.1| cold shock protein CspC [Escherichia coli DEC12D]
gi|378187357|gb|EHX47969.1| cold shock protein CspC [Escherichia coli DEC13A]
gi|378190004|gb|EHX50590.1| cold shock protein CspC [Escherichia coli DEC12E]
gi|378201980|gb|EHX62420.1| cold shock protein CspC [Escherichia coli DEC13C]
gi|378202219|gb|EHX62658.1| cold shock protein CspC [Escherichia coli DEC13B]
gi|378205210|gb|EHX65625.1| cold shock protein CspC [Escherichia coli DEC13D]
gi|378214053|gb|EHX74362.1| cold shock protein CspC [Escherichia coli DEC13E]
gi|378218613|gb|EHX78884.1| cold shock-like protein CspC [Escherichia coli DEC14A]
gi|378220620|gb|EHX80872.1| cold shock protein CspC [Escherichia coli DEC14B]
gi|378229001|gb|EHX89151.1| cold shock protein CspC [Escherichia coli DEC14C]
gi|378232108|gb|EHX92210.1| cold shock protein CspC [Escherichia coli DEC14D]
gi|378238463|gb|EHX98464.1| cold shock protein CspC [Escherichia coli DEC15A]
gi|378245159|gb|EHY05097.1| cold shock protein CspC [Escherichia coli DEC15B]
gi|378248002|gb|EHY07917.1| cold shock protein CspC [Escherichia coli DEC15C]
gi|378255536|gb|EHY15394.1| cold shock protein CspC [Escherichia coli DEC15D]
gi|378259687|gb|EHY19499.1| cold shock protein CspC [Escherichia coli DEC15E]
gi|379052891|gb|EHY70782.1| cold shock protein CspE [Salmonella enterica subsp. houtenae str.
ATCC BAA-1581]
gi|379985250|emb|CCF88662.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Senftenberg str. SS209]
gi|380348390|gb|EIA36672.1| Cold shock-like protein cspC [Escherichia coli SCI-07]
gi|380463346|gb|AFD58749.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Typhimurium str. 798]
gi|381294515|gb|EIC35654.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41579]
gi|381300420|gb|EIC41482.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41573]
gi|381303042|gb|EIC44071.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41563]
gi|381307499|gb|EIC48353.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41565]
gi|381311391|gb|EIC52210.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41566]
gi|383392735|gb|AFH17693.1| cold shock-like protein cspc [Escherichia coli KO11FL]
gi|383405374|gb|AFH11617.1| cold shock-like protein cspc [Escherichia coli W]
gi|383466869|gb|EID61890.1| cold shock-like protein CspC [Shigella flexneri 5a str. M90T]
gi|383798710|gb|AFH45792.1| Cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Heidelberg str. B182]
gi|384379421|gb|EIE37289.1| Cold shock-like protein cspC [Escherichia coli J53]
gi|384470083|gb|EIE54208.1| Cold shock-like protein cspC [Escherichia coli AI27]
gi|385157845|gb|EIF19835.1| Cold shock-like protein cspC [Escherichia coli O32:H37 str. P4]
gi|385539567|gb|EIF86399.1| cold shock-like protein CspC [Escherichia coli M919]
gi|385705354|gb|EIG42419.1| cold shock-like protein CspC [Escherichia coli H730]
gi|385713200|gb|EIG50136.1| cold shock-like protein CspC [Escherichia coli B799]
gi|386122067|gb|EIG70680.1| cold shock-like protein CspC [Escherichia sp. 4_1_40B]
gi|386141111|gb|EIG82263.1| cold shock-like protein CspE [Escherichia coli 1.2741]
gi|386148154|gb|EIG94591.1| cold shock-like protein CspE [Escherichia coli 97.0246]
gi|386152165|gb|EIH03454.1| cold shock-like protein CspE [Escherichia coli 5.0588]
gi|386158172|gb|EIH14509.1| cold shock-like protein CspE [Escherichia coli 97.0259]
gi|386160979|gb|EIH22784.1| cold shock-like protein CspE [Escherichia coli 1.2264]
gi|386167650|gb|EIH34166.1| cold shock-like protein CspE [Escherichia coli 96.0497]
gi|386171035|gb|EIH43083.1| cold shock-like protein CspE [Escherichia coli 99.0741]
gi|386180417|gb|EIH57891.1| cold shock-like protein CspE [Escherichia coli 3.2608]
gi|386181395|gb|EIH64158.1| cold shock-like protein CspE [Escherichia coli 93.0624]
gi|386189539|gb|EIH78305.1| cold shock-like protein CspE [Escherichia coli 4.0522]
gi|386194502|gb|EIH88753.1| cold shock-like protein CspE [Escherichia coli JB1-95]
gi|386200766|gb|EIH99756.1| cold shock-like protein CspE [Escherichia coli 96.154]
gi|386204286|gb|EII08797.1| cold shock-like protein CspE [Escherichia coli 5.0959]
gi|386209054|gb|EII19545.1| cold shock-like protein CspE [Escherichia coli 9.0111]
gi|386217672|gb|EII34157.1| cold shock-like protein CspE [Escherichia coli 4.0967]
gi|386224780|gb|EII47115.1| cold shock-like protein CspE [Escherichia coli 2.3916]
gi|386232140|gb|EII59487.1| cold shock-like protein CspE [Escherichia coli 3.3884]
gi|386236413|gb|EII68389.1| cold shock-like protein CspE [Escherichia coli 2.4168]
gi|386240250|gb|EII77174.1| cold shock-like protein CspE [Escherichia coli 3.2303]
gi|386243829|gb|EII85562.1| cold shock-like protein CspE [Escherichia coli 3003]
gi|386253780|gb|EIJ03470.1| cold shock-like protein CspE [Escherichia coli B41]
gi|386257695|gb|EIJ13178.1| cold shock-like protein CspE [Escherichia coli 900105 (10e)]
gi|386796388|gb|AFJ29422.1| cold shock-like protein CspC [Escherichia coli Xuzhou21]
gi|386923891|gb|AFJ46845.1| cold shock protein [Escherichia blattae DSM 4481]
gi|388336386|gb|EIL02930.1| Cold shock-like protein cspC [Escherichia coli O111:H11 str.
CVM9534]
gi|388337296|gb|EIL03798.1| Cold shock-like protein cspC [Escherichia coli O103:H25 str.
CVM9340]
gi|388342663|gb|EIL08697.1| Cold shock-like protein cspC [Escherichia coli O103:H2 str.
CVM9450]
gi|388355473|gb|EIL20304.1| Cold shock-like protein cspC [Escherichia coli O111:H11 str.
CVM9545]
gi|388355733|gb|EIL20555.1| Cold shock-like protein cspC [Escherichia coli O111:H8 str.
CVM9574]
gi|388361738|gb|EIL25815.1| Cold shock-like protein cspC [Escherichia coli O111:H8 str.
CVM9570]
gi|388372534|gb|EIL35955.1| Cold shock-like protein cspC [Escherichia coli O26:H11 str.
CVM9942]
gi|388373532|gb|EIL36801.1| Cold shock-like protein cspC [Escherichia coli O26:H11 str.
CVM10026]
gi|388387749|gb|EIL49358.1| Cold shock-like protein cspC [Escherichia coli KD1]
gi|388393399|gb|EIL54781.1| Cold shock-like protein cspC [Escherichia coli 541-15]
gi|388395904|gb|EIL57039.1| Cold shock-like protein cspC [Escherichia coli KD2]
gi|388399331|gb|EIL60132.1| Cold shock-like protein cspC [Escherichia coli 75]
gi|388400018|gb|EIL60788.1| Cold shock-like protein cspC [Escherichia coli 541-1]
gi|388412393|gb|EIL72473.1| Cold shock-like protein cspC [Escherichia coli HM605]
gi|388417573|gb|EIL77414.1| Cold shock-like protein cspC [Escherichia coli 576-1]
gi|388417587|gb|EIL77427.1| Cold shock-like protein cspC [Escherichia coli CUMT8]
gi|388606772|gb|EIM35978.1| Cold shock-like protein cspC [Enterobacter cloacae subsp. cloacae
GS1]
gi|390645064|gb|EIN24248.1| cold shock-like protein cspC [Escherichia coli FDA517]
gi|390645205|gb|EIN24388.1| cold shock-like protein cspC [Escherichia coli FRIK1996]
gi|390645938|gb|EIN25076.1| cold shock-like protein cspC [Escherichia coli FDA505]
gi|390663528|gb|EIN41024.1| cold shock-like protein cspC [Escherichia coli 93-001]
gi|390664901|gb|EIN42229.1| cold shock-like protein cspC [Escherichia coli FRIK1985]
gi|390665959|gb|EIN43165.1| cold shock-like protein cspC [Escherichia coli FRIK1990]
gi|390681519|gb|EIN57312.1| cold shock-like protein cspC [Escherichia coli PA3]
gi|390684562|gb|EIN60173.1| cold shock-like protein cspC [Escherichia coli PA5]
gi|390685542|gb|EIN61012.1| cold shock-like protein cspC [Escherichia coli PA9]
gi|390701391|gb|EIN75615.1| cold shock-like protein cspC [Escherichia coli PA10]
gi|390702957|gb|EIN77008.1| cold shock-like protein cspC [Escherichia coli PA15]
gi|390703740|gb|EIN77735.1| cold shock-like protein cspC [Escherichia coli PA14]
gi|390715779|gb|EIN88615.1| cold shock-like protein cspC [Escherichia coli PA22]
gi|390726926|gb|EIN99354.1| cold shock-like protein cspC [Escherichia coli PA25]
gi|390727356|gb|EIN99773.1| cold shock-like protein cspC [Escherichia coli PA24]
gi|390729628|gb|EIO01788.1| cold shock-like protein cspC [Escherichia coli PA28]
gi|390745169|gb|EIO15989.1| cold shock-like protein cspC [Escherichia coli PA32]
gi|390745941|gb|EIO16716.1| cold shock-like protein cspC [Escherichia coli PA31]
gi|390747486|gb|EIO18039.1| cold shock-like protein cspC [Escherichia coli PA33]
gi|390759366|gb|EIO28764.1| cold shock-like protein cspC [Escherichia coli PA40]
gi|390769849|gb|EIO38745.1| cold shock-like protein cspC [Escherichia coli PA41]
gi|390771464|gb|EIO40142.1| cold shock-like protein cspC [Escherichia coli PA39]
gi|390771804|gb|EIO40459.1| cold shock-like protein cspC [Escherichia coli PA42]
gi|390782749|gb|EIO50383.1| cold shock-like protein cspC [Escherichia coli TW06591]
gi|390790959|gb|EIO58354.1| cold shock-like protein cspC [Escherichia coli TW10246]
gi|390796711|gb|EIO63977.1| cold shock-like protein cspC [Escherichia coli TW07945]
gi|390798366|gb|EIO65562.1| cold shock-like protein cspC [Escherichia coli TW11039]
gi|390808543|gb|EIO75382.1| cold shock-like protein cspC [Escherichia coli TW09109]
gi|390809703|gb|EIO76485.1| cold shock-like protein cspC [Escherichia coli TW09098]
gi|390817085|gb|EIO83545.1| cold shock-like protein cspC [Escherichia coli TW10119]
gi|390829153|gb|EIO94761.1| cold shock-like protein cspC [Escherichia coli EC4203]
gi|390832396|gb|EIO97650.1| cold shock-like protein cspC [Escherichia coli TW09195]
gi|390833973|gb|EIO98949.1| cold shock-like protein cspC [Escherichia coli EC4196]
gi|390849015|gb|EIP12463.1| cold shock-like protein cspC [Escherichia coli TW14301]
gi|390850676|gb|EIP14033.1| cold shock-like protein cspC [Escherichia coli TW14313]
gi|390852153|gb|EIP15322.1| cold shock-like protein cspC [Escherichia coli EC4421]
gi|390863595|gb|EIP25727.1| cold shock-like protein cspC [Escherichia coli EC4422]
gi|390867956|gb|EIP29722.1| cold shock-like protein cspC [Escherichia coli EC4013]
gi|390873676|gb|EIP34857.1| cold shock-like protein cspC [Escherichia coli EC4402]
gi|390880617|gb|EIP41293.1| cold shock-like protein cspC [Escherichia coli EC4439]
gi|390885149|gb|EIP45398.1| cold shock-like protein cspC [Escherichia coli EC4436]
gi|390896499|gb|EIP55885.1| cold shock-like protein cspC [Escherichia coli EC4437]
gi|390900510|gb|EIP59729.1| cold shock-like protein cspC [Escherichia coli EC4448]
gi|390901407|gb|EIP60591.1| cold shock-like protein cspC [Escherichia coli EC1738]
gi|390908757|gb|EIP67558.1| cold shock-like protein cspC [Escherichia coli EC1734]
gi|390921203|gb|EIP79426.1| cold shock-like protein cspC [Escherichia coli EC1863]
gi|390922093|gb|EIP80201.1| cold shock-like protein cspC [Escherichia coli EC1845]
gi|391251122|gb|EIQ10338.1| cold shock-like protein CspC [Shigella flexneri 2850-71]
gi|391253650|gb|EIQ12821.1| cold shock-like protein CspC [Shigella flexneri CCH060]
gi|391254841|gb|EIQ13999.1| cold shock-like protein CspC [Shigella flexneri K-1770]
gi|391264438|gb|EIQ23430.1| cold shock-like protein CspC [Shigella flexneri K-315]
gi|391269836|gb|EIQ28734.1| cold shock-like protein CspC [Shigella flexneri K-404]
gi|391272157|gb|EIQ31014.1| cold shock-like protein CspC [Shigella boydii 965-58]
gi|391280738|gb|EIQ39402.1| cold shock-like protein CspC [Shigella boydii 4444-74]
gi|391285282|gb|EIQ43862.1| cold shock-like protein CspC [Shigella sonnei 3226-85]
gi|391286855|gb|EIQ45389.1| cold shock-like protein CspC [Shigella sonnei 3233-85]
gi|391295305|gb|EIQ53474.1| cold shock protein CspC [Shigella sonnei 4822-66]
gi|391302396|gb|EIQ60258.1| cold shock-like protein CspC [Shigella dysenteriae 225-75]
gi|391306062|gb|EIQ63827.1| cold shock-like protein CspC [Escherichia coli EPECa12]
gi|391313268|gb|EIQ70861.1| cold shock protein CspC [Escherichia coli EPEC C342-62]
gi|391318661|gb|EIQ75770.1| cold shock-like protein CspC [Shigella flexneri 1235-66]
gi|391324185|gb|EIQ80793.1| cold shock-like protein CspC [Shigella flexneri 1235-66]
gi|392325523|gb|AFM60476.1| Cold shock-like protein cspC [Enterobacter cloacae subsp.
dissolvens SDM]
gi|392616626|gb|EIW99058.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Newport str. Levine 15]
gi|392617828|gb|EIX00243.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Newport str. Levine 1]
gi|392732628|gb|EIZ89839.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21539]
gi|392735271|gb|EIZ92448.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35185]
gi|392739558|gb|EIZ96691.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35199]
gi|392743901|gb|EJA00963.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Newport str. CVM 33953]
gi|392750784|gb|EJA07744.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21559]
gi|392754415|gb|EJA11332.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35188]
gi|392760855|gb|EJA17686.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19449]
gi|392761100|gb|EJA17930.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19447]
gi|392770399|gb|EJA27127.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19567]
gi|392773457|gb|EJA30153.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21550]
gi|392774753|gb|EJA31448.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22513]
gi|392778069|gb|EJA34750.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35202]
gi|392787378|gb|EJA43920.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21538]
gi|392789621|gb|EJA46125.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22462]
gi|392792309|gb|EJA48773.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22425]
gi|392795368|gb|EJA51740.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Newport str. CVM N18486]
gi|392801111|gb|EJA57341.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Newport str. CVM N1543]
gi|392810965|gb|EJA66977.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21554]
gi|392813884|gb|EJA69848.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19443]
gi|392818361|gb|EJA74245.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Newport str. CVM 37978]
gi|392828334|gb|EJA84029.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19470]
gi|392829585|gb|EJA85255.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19593]
gi|392833272|gb|EJA88887.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19536]
gi|392840132|gb|EJA95670.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Newport str. CVM 4176]
gi|394346901|gb|AFN33022.1| Cold shock protein CspC [Klebsiella oxytoca E718]
gi|394383004|gb|EJE60612.1| Cold shock-like protein cspC [Escherichia coli O111:H8 str.
CVM9602]
gi|394383631|gb|EJE61224.1| Cold shock-like protein cspC [Escherichia coli O26:H11 str.
CVM10224]
gi|394398311|gb|EJE74498.1| Cold shock-like protein cspC [Escherichia coli O111:H8 str.
CVM9634]
gi|394402481|gb|EJE78200.1| Cold shock-like protein cspC [Escherichia coli O26:H11 str.
CVM10021]
gi|394404960|gb|EJE80266.1| Cold shock-like protein cspC [Escherichia coli O111:H11 str.
CVM9455]
gi|394407997|gb|EJE82730.1| Cold shock-like protein cspC [Escherichia coli O111:H11 str.
CVM9553]
gi|394422989|gb|EJE96288.1| Cold shock-like protein cspC [Escherichia coli O26:H11 str.
CVM9952]
gi|394424472|gb|EJE97602.1| Cold shock-like protein cspC [Escherichia coli O26:H11 str.
CVM10030]
gi|394716997|gb|EJF22727.1| cold shock-like protein CspC [Citrobacter sp. A1]
gi|394733341|gb|EJF32969.1| Cold shock-like protein cspC [Enterobacter sp. Ag1]
gi|395986408|gb|EJH95572.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 640631]
gi|395987158|gb|EJH96321.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 622731-39]
gi|395990512|gb|EJH99643.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639016-6]
gi|395997238|gb|EJI06279.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-6]
gi|395997649|gb|EJI06689.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 485549-17]
gi|396006528|gb|EJI15491.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-0424]
gi|396008556|gb|EJI17490.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-22]
gi|396010797|gb|EJI19709.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-70]
gi|396013699|gb|EJI22586.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-26]
gi|396021291|gb|EJI30117.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-37]
gi|396022672|gb|EJI31485.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-50]
gi|396030203|gb|EJI38938.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-46]
gi|396039892|gb|EJI48516.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-1427]
gi|396041107|gb|EJI49730.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 78-1757]
gi|396044974|gb|EJI53569.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-2659]
gi|396053025|gb|EJI61530.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648905 5-18]
gi|396053335|gb|EJI61832.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 8b-1]
gi|396055787|gb|EJI64264.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22510-1]
gi|396062389|gb|EJI70802.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 50-3079]
gi|396064858|gb|EJI73241.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 6-18]
gi|396074214|gb|EJI82505.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 58-6482]
gi|396093321|gb|EJI90878.1| cold shock-like protein CspC [Enterobacter radicincitans DSM
16656]
gi|397347126|gb|EJJ40235.1| Cold shock-like protein cspC [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|397349219|gb|EJJ42314.1| Cold shock-like protein cspC [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|397352223|gb|EJJ45303.1| Cold shock-like protein cspC [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|397359201|gb|EJJ51901.1| Cold shock-like protein cspC [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|397366514|gb|EJJ59130.1| Cold shock-like protein cspC [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|397370761|gb|EJJ63325.1| Cold shock-like protein cspC [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|397377355|gb|EJJ69589.1| Cold shock-like protein cspC [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|397381752|gb|EJJ73920.1| Cold shock-like protein cspC [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|397388418|gb|EJJ80396.1| Cold shock-like protein cspC [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|397396624|gb|EJJ88311.1| Cold shock-like protein cspC [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|397401664|gb|EJJ93283.1| Cold shock-like protein cspC [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
gi|397406752|gb|EJJ98163.1| Cold shock-like protein cspC [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|397414381|gb|EJK05581.1| Cold shock-like protein cspC [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|397414848|gb|EJK06040.1| Cold shock-like protein cspC [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|397423565|gb|EJK14489.1| Cold shock-like protein cspC [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|397430732|gb|EJK21420.1| Cold shock-like protein cspC [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|397435779|gb|EJK26387.1| Cold shock-like protein cspC [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|397438694|gb|EJK29180.1| Cold shock-like protein cspC [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|397447198|gb|EJK37398.1| Cold shock-like protein cspC [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|397452586|gb|EJK42654.1| Cold shock-like protein cspC [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|397785457|gb|EJK96307.1| cold shock-like protein cspI [Escherichia coli STEC_O31]
gi|397898470|gb|EJL14853.1| cold shock protein CspC [Shigella flexneri 6603-63]
gi|397901758|gb|EJL18098.1| cold shock protein CspC [Shigella sonnei str. Moseley]
gi|400175699|gb|AFP70548.1| Cold shock-like protein cspC [Enterobacter cloacae subsp. cloacae
ENHKU01]
gi|400216979|gb|EJO47878.1| CspC Protein [Enterobacter sp. SST3]
gi|402285741|gb|EJU34222.1| cold shock-like protein CspI [Klebsiella sp. OBRC7]
gi|402521090|gb|EJW28428.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00326]
gi|402523866|gb|EJW31174.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00322]
gi|402524977|gb|EJW32274.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00325]
gi|402532481|gb|EJW39673.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00328]
gi|402541059|gb|AFQ65208.1| Cold shock protein CspC [Klebsiella pneumoniae subsp. pneumoniae
1084]
gi|403193346|dbj|GAB82987.1| cold shock-like protein CspC [Escherichia blattae NBRC 105725]
gi|404291245|gb|EJZ48135.1| cold shock-like protein CspC [Escherichia sp. 1_1_43]
gi|404340693|gb|EJZ67111.1| cold shock protein CspC [Shigella flexneri 1485-80]
gi|405593592|gb|EKB67033.1| cold shock-like protein CspC [Klebsiella pneumoniae subsp.
pneumoniae WGLW1]
gi|405600423|gb|EKB73588.1| cold shock-like protein CspC [Klebsiella pneumoniae subsp.
pneumoniae WGLW2]
gi|405603445|gb|EKB76566.1| cold shock-like protein CspC [Klebsiella pneumoniae subsp.
pneumoniae WGLW3]
gi|405612189|gb|EKB84947.1| cold shock-like protein CspC [Klebsiella pneumoniae subsp.
pneumoniae WGLW5]
gi|406777424|gb|AFS56848.1| Cold shock-like protein cspC [Escherichia coli O104:H4 str.
2009EL-2050]
gi|407054010|gb|AFS74061.1| Cold shock-like protein cspC [Escherichia coli O104:H4 str.
2011C-3493]
gi|407065658|gb|AFS86705.1| Cold shock-like protein cspC [Escherichia coli O104:H4 str.
2009EL-2071]
gi|407806983|gb|EKF78234.1| Cold shock-like protein cspC [Klebsiella pneumoniae subsp.
pneumoniae KpQ3]
gi|408067087|gb|EKH01530.1| cold shock-like protein cspC [Escherichia coli PA7]
gi|408070868|gb|EKH05224.1| cold shock-like protein cspC [Escherichia coli FRIK920]
gi|408076197|gb|EKH10425.1| cold shock-like protein cspC [Escherichia coli PA34]
gi|408081970|gb|EKH15962.1| cold shock-like protein cspC [Escherichia coli FDA506]
gi|408084441|gb|EKH18213.1| cold shock-like protein cspC [Escherichia coli FDA507]
gi|408093207|gb|EKH26306.1| cold shock-like protein cspC [Escherichia coli FDA504]
gi|408099077|gb|EKH31731.1| cold shock-like protein cspC [Escherichia coli FRIK1999]
gi|408106891|gb|EKH38982.1| cold shock-like protein cspC [Escherichia coli FRIK1997]
gi|408110631|gb|EKH42418.1| cold shock-like protein cspC [Escherichia coli NE1487]
gi|408118063|gb|EKH49237.1| cold shock-like protein cspC [Escherichia coli NE037]
gi|408123561|gb|EKH54300.1| cold shock-like protein cspC [Escherichia coli FRIK2001]
gi|408129682|gb|EKH59901.1| cold shock-like protein cspC [Escherichia coli PA4]
gi|408141004|gb|EKH70484.1| cold shock-like protein cspC [Escherichia coli PA23]
gi|408142679|gb|EKH72028.1| cold shock-like protein cspC [Escherichia coli PA49]
gi|408147812|gb|EKH76721.1| cold shock-like protein cspC [Escherichia coli PA45]
gi|408156157|gb|EKH84364.1| cold shock-like protein cspC [Escherichia coli TT12B]
gi|408163280|gb|EKH91147.1| cold shock-like protein cspC [Escherichia coli MA6]
gi|408165701|gb|EKH93378.1| cold shock-like protein cspC [Escherichia coli 5905]
gi|408176829|gb|EKI03662.1| cold shock-like protein cspC [Escherichia coli CB7326]
gi|408183575|gb|EKI10000.1| cold shock-like protein cspC [Escherichia coli EC96038]
gi|408184405|gb|EKI10728.1| cold shock-like protein cspC [Escherichia coli 5412]
gi|408194192|gb|EKI19680.1| cold shock-like protein cspC [Escherichia coli TW15901]
gi|408202703|gb|EKI27765.1| cold shock-like protein cspC [Escherichia coli TW00353]
gi|408203013|gb|EKI28071.1| cold shock-like protein cspC [Escherichia coli ARS4.2123]
gi|408214866|gb|EKI39274.1| cold shock-like protein cspC [Escherichia coli 3006]
gi|408216736|gb|EKI41050.1| cold shock-like protein cspC [Escherichia coli 07798]
gi|408220357|gb|EKI44413.1| cold shock-like protein cspC [Escherichia coli PA38]
gi|408229353|gb|EKI52785.1| cold shock-like protein cspC [Escherichia coli N1]
gi|408229620|gb|EKI53047.1| cold shock-like protein cspC [Escherichia coli EC1735]
gi|408241107|gb|EKI63757.1| cold shock-like protein cspC [Escherichia coli EC1736]
gi|408245132|gb|EKI67525.1| cold shock-like protein cspC [Escherichia coli EC1737]
gi|408249511|gb|EKI71441.1| cold shock-like protein cspC [Escherichia coli EC1846]
gi|408259997|gb|EKI81132.1| cold shock-like protein cspC [Escherichia coli EC1847]
gi|408261980|gb|EKI82933.1| cold shock-like protein cspC [Escherichia coli EC1848]
gi|408267630|gb|EKI88077.1| cold shock-like protein cspC [Escherichia coli EC1849]
gi|408277552|gb|EKI97339.1| cold shock-like protein cspC [Escherichia coli EC1850]
gi|408279870|gb|EKI99453.1| cold shock-like protein cspC [Escherichia coli EC1856]
gi|408291642|gb|EKJ10235.1| cold shock-like protein cspC [Escherichia coli EC1862]
gi|408293859|gb|EKJ12280.1| cold shock-like protein cspC [Escherichia coli EC1864]
gi|408298372|gb|EKJ16315.1| cold shock-like protein cspC [Escherichia coli EC1865]
gi|408310732|gb|EKJ27773.1| cold shock-like protein cspC [Escherichia coli EC1868]
gi|408311333|gb|EKJ28343.1| cold shock-like protein cspC [Escherichia coli EC1866]
gi|408323572|gb|EKJ39534.1| cold shock-like protein cspC [Escherichia coli EC1869]
gi|408328188|gb|EKJ43805.1| cold shock-like protein cspC [Escherichia coli NE098]
gi|408328951|gb|EKJ44490.1| cold shock-like protein cspC [Escherichia coli EC1870]
gi|408338910|gb|EKJ53530.1| cold shock-like protein cspC [Escherichia coli FRIK523]
gi|408344758|gb|EKJ59107.1| cold shock-like protein cspC [Escherichia coli 0.1288]
gi|408348726|gb|EKJ62807.1| cold shock-like protein cspC [Escherichia coli 0.1304]
gi|408460812|gb|EKJ84590.1| Cold shock-like protein cspC [Escherichia coli AD30]
gi|408551714|gb|EKK28952.1| cold shock-like protein CspC [Escherichia coli 5.2239]
gi|408552543|gb|EKK29715.1| cold shock-like protein CspC [Escherichia coli 3.4870]
gi|408553112|gb|EKK30243.1| cold shock-like protein cspC [Escherichia coli 6.0172]
gi|408569623|gb|EKK45610.1| cold shock-like protein cspC [Escherichia coli 8.0566]
gi|408570865|gb|EKK46821.1| cold shock-like protein CspC [Escherichia coli 8.0569]
gi|408574318|gb|EKK50095.1| cold shock-like protein CspC [Escherichia coli 8.0586]
gi|408582435|gb|EKK57650.1| cold shock-like protein cspC [Escherichia coli 10.0833]
gi|408583101|gb|EKK58279.1| cold shock-like protein CspC [Escherichia coli 8.2524]
gi|408594682|gb|EKK68963.1| cold shock-like protein CspC [Escherichia coli 10.0869]
gi|408598247|gb|EKK72206.1| cold shock-like protein CspC [Escherichia coli 88.0221]
gi|408602283|gb|EKK76004.1| cold shock-like protein cspC [Escherichia coli 8.0416]
gi|408613637|gb|EKK86924.1| cold shock-like protein CspC [Escherichia coli 10.0821]
gi|410112571|emb|CCM85792.1| Cold shock protein CspC [Klebsiella pneumoniae subsp. pneumoniae
ST258-K26BO]
gi|410118652|emb|CCM91148.1| Cold shock protein CspC [Klebsiella pneumoniae subsp. pneumoniae
ST258-K28BO]
gi|410373415|gb|EKP28113.1| Cold shock-like protein cspC [Klebsiella oxytoca M5al]
gi|411771052|gb|EKS54775.1| Cold shock-like protein cspC [Citrobacter freundii ATCC 8090 =
MTCC 1658]
gi|412963135|emb|CCK47053.1| cold shock protein [Escherichia coli chi7122]
gi|414019234|gb|EKT02853.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm8]
gi|414021224|gb|EKT04780.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm2]
gi|414047731|gb|EKT29999.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm10]
gi|414049223|gb|EKT31442.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm6]
gi|414059815|gb|EKT41361.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm12]
gi|414065311|gb|EKT46077.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm5]
gi|414708702|emb|CCN30406.1| cold shock protein CspC [Klebsiella pneumoniae subsp. pneumoniae
Ecl8]
gi|421938330|gb|EKT95904.1| Cold shock-like protein cspC [Escherichia coli O26:H11 str.
CFSAN001629]
gi|421942532|gb|EKT99859.1| Cold shock-like protein cspC [Escherichia coli O111:H8 str.
CFSAN001632]
gi|421949837|gb|EKU06747.1| Cold shock-like protein cspC [Escherichia coli O111:H11 str.
CFSAN001630]
gi|422895843|gb|EKU35630.1| hypothetical protein B397_1469 [Citrobacter sp. L17]
gi|426276996|gb|EKV54723.1| Cold shock-like protein cspC (CSP-C) [Erwinia amylovora ACW56400]
gi|426306605|gb|EKV68705.1| Cold shock-like protein cspC [Klebsiella pneumoniae VA360]
gi|426308138|gb|EKV70207.1| Cold shock-like protein cspC [Klebsiella pneumoniae JHCK1]
gi|427207675|gb|EKV77843.1| cold shock-like protein CspC [Escherichia coli 88.1042]
gi|427209336|gb|EKV79375.1| cold shock-like protein CspC [Escherichia coli 89.0511]
gi|427210609|gb|EKV80464.1| cold shock-like protein CspC [Escherichia coli 88.1467]
gi|427226398|gb|EKV94988.1| cold shock-like protein CspC [Escherichia coli 90.2281]
gi|427226642|gb|EKV95231.1| cold shock-like protein CspC [Escherichia coli 90.0091]
gi|427229637|gb|EKV97951.1| cold shock-like protein CspC [Escherichia coli 90.0039]
gi|427244806|gb|EKW12115.1| cold shock-like protein CspC [Escherichia coli 93.0056]
gi|427245419|gb|EKW12703.1| cold shock-like protein CspC [Escherichia coli 93.0055]
gi|427247663|gb|EKW14715.1| cold shock-like protein CspC [Escherichia coli 94.0618]
gi|427263483|gb|EKW29241.1| cold shock-like protein CspC [Escherichia coli 95.0943]
gi|427264366|gb|EKW30053.1| cold shock-like protein CspC [Escherichia coli 95.0183]
gi|427266391|gb|EKW31837.1| cold shock-like protein CspC [Escherichia coli 95.1288]
gi|427278612|gb|EKW43068.1| cold shock-like protein CspC [Escherichia coli 96.0428]
gi|427282528|gb|EKW46773.1| cold shock-like protein CspC [Escherichia coli 96.0427]
gi|427285108|gb|EKW49111.1| cold shock-like protein CspC [Escherichia coli 96.0939]
gi|427294344|gb|EKW57529.1| cold shock-like protein CspC [Escherichia coli 96.0932]
gi|427301412|gb|EKW64274.1| cold shock-like protein CspC [Escherichia coli 96.0107]
gi|427302244|gb|EKW65080.1| cold shock-like protein CspC [Escherichia coli 97.0003]
gi|427317798|gb|EKW79689.1| cold shock-like protein CspC [Escherichia coli 97.0007]
gi|427322405|gb|EKW84038.1| cold shock-like protein CspC [Escherichia coli 99.0672]
gi|427330138|gb|EKW91416.1| cold shock-like protein cspC [Escherichia coli 99.0678]
gi|427330534|gb|EKW91804.1| cold shock-like protein CspC [Escherichia coli 99.0713]
gi|427541824|emb|CCM92325.1| Cold shock protein CspC [Klebsiella pneumoniae subsp. pneumoniae
ST512-K30BO]
gi|429255213|gb|EKY39548.1| cold shock-like protein CspC [Escherichia coli 96.0109]
gi|429256985|gb|EKY41088.1| cold shock-like protein CspC [Escherichia coli 97.0010]
gi|429346258|gb|EKY83038.1| cold shock-like protein CspC [Escherichia coli O104:H4 str.
11-02030]
gi|429348099|gb|EKY84870.1| cold shock-like protein CspC [Escherichia coli O104:H4 str.
11-02033-1]
gi|429354800|gb|EKY91496.1| cold shock-like protein CspC [Escherichia coli O104:H4 str.
11-02092]
gi|429363000|gb|EKY99644.1| cold shock-like protein CspC [Escherichia coli O104:H4 str.
11-02093]
gi|429364899|gb|EKZ01517.1| cold shock-like protein CspC [Escherichia coli O104:H4 str.
11-02281]
gi|429366623|gb|EKZ03225.1| cold shock-like protein CspC [Escherichia coli O104:H4 str.
11-02318]
gi|429377087|gb|EKZ13612.1| cold shock-like protein CspC [Escherichia coli O104:H4 str.
11-02913]
gi|429381598|gb|EKZ18083.1| cold shock-like protein CspC [Escherichia coli O104:H4 str.
11-03943]
gi|429384624|gb|EKZ21081.1| cold shock-like protein CspC [Escherichia coli O104:H4 str.
11-03439]
gi|429393297|gb|EKZ29693.1| cold shock-like protein CspC [Escherichia coli O104:H4 str.
11-04080]
gi|429393988|gb|EKZ30374.1| cold shock-like protein CspC [Escherichia coli O104:H4 str.
Ec11-9450]
gi|429407507|gb|EKZ43760.1| cold shock-like protein CspC [Escherichia coli O104:H4 str.
Ec11-4984]
gi|429408364|gb|EKZ44602.1| cold shock-like protein CspC [Escherichia coli O104:H4 str.
Ec11-9990]
gi|429409810|gb|EKZ46036.1| cold shock-like protein CspC [Escherichia coli O104:H4 str.
Ec11-4986]
gi|429426498|gb|EKZ62587.1| cold shock-like protein CspC [Escherichia coli O104:H4 str.
Ec11-5603]
gi|429426904|gb|EKZ62991.1| cold shock-like protein CspC [Escherichia coli O104:H4 str.
Ec11-4987]
gi|429431468|gb|EKZ67517.1| cold shock-like protein CspC [Escherichia coli O104:H4 str.
Ec11-5604]
gi|429433869|gb|EKZ69899.1| cold shock-like protein CspC [Escherichia coli O104:H4 str.
Ec11-4988]
gi|429440830|gb|EKZ76807.1| cold shock-like protein CspC [Escherichia coli O104:H4 str.
Ec11-6006]
gi|429444408|gb|EKZ80354.1| cold shock-like protein CspC [Escherichia coli O104:H4 str.
Ec12-0466]
gi|429450037|gb|EKZ85935.1| cold shock-like protein CspC [Escherichia coli O104:H4 str.
Ec12-0465]
gi|429453898|gb|EKZ89766.1| cold shock-like protein CspC [Escherichia coli O104:H4 str.
Ec11-9941]
gi|430875975|gb|ELB99496.1| cold shock-like protein CspC [Escherichia coli KTE2]
gi|430878138|gb|ELC01570.1| cold shock-like protein CspC [Escherichia coli KTE4]
gi|430885574|gb|ELC08445.1| cold shock-like protein CspC [Escherichia coli KTE10]
gi|430887319|gb|ELC10146.1| cold shock-like protein CspC [Escherichia coli KTE5]
gi|430898313|gb|ELC20448.1| cold shock-like protein CspC [Escherichia coli KTE11]
gi|430899264|gb|ELC21369.1| cold shock-like protein CspC [Escherichia coli KTE12]
gi|430907223|gb|ELC28722.1| cold shock-like protein CspC [Escherichia coli KTE16]
gi|430908491|gb|ELC29884.1| cold shock-like protein CspC [Escherichia coli KTE15]
gi|430915720|gb|ELC36798.1| cold shock-like protein CspC [Escherichia coli KTE25]
gi|430920047|gb|ELC40967.1| cold shock-like protein CspC [Escherichia coli KTE21]
gi|430926915|gb|ELC47502.1| cold shock-like protein CspC [Escherichia coli KTE26]
gi|430929591|gb|ELC50100.1| cold shock-like protein CspC [Escherichia coli KTE28]
gi|430935263|gb|ELC55585.1| cold shock-like protein CspC [Escherichia coli KTE39]
gi|430940409|gb|ELC60592.1| cold shock-like protein CspC [Escherichia coli KTE44]
gi|430944841|gb|ELC64930.1| cold shock-like protein CspC [Escherichia coli KTE178]
gi|430953521|gb|ELC72419.1| cold shock-like protein CspC [Escherichia coli KTE187]
gi|430956598|gb|ELC75272.1| cold shock-like protein CspC [Escherichia coli KTE181]
gi|430964433|gb|ELC81880.1| cold shock-like protein CspC [Escherichia coli KTE188]
gi|430967074|gb|ELC84436.1| cold shock-like protein CspC [Escherichia coli KTE189]
gi|430981413|gb|ELC98141.1| cold shock-like protein CspC [Escherichia coli KTE193]
gi|430982730|gb|ELC99419.1| cold shock-like protein CspC [Escherichia coli KTE201]
gi|430989590|gb|ELD06044.1| cold shock-like protein CspC [Escherichia coli KTE204]
gi|430994290|gb|ELD10621.1| cold shock-like protein CspC [Escherichia coli KTE205]
gi|430998338|gb|ELD14579.1| cold shock-like protein CspC [Escherichia coli KTE206]
gi|431005941|gb|ELD20948.1| cold shock-like protein CspC [Escherichia coli KTE208]
gi|431007820|gb|ELD22631.1| cold shock-like protein CspC [Escherichia coli KTE210]
gi|431015975|gb|ELD29522.1| cold shock-like protein CspC [Escherichia coli KTE212]
gi|431021467|gb|ELD34790.1| cold shock-like protein CspC [Escherichia coli KTE213]
gi|431024425|gb|ELD37590.1| cold shock-like protein CspC [Escherichia coli KTE214]
gi|431029045|gb|ELD42077.1| cold shock-like protein CspC [Escherichia coli KTE216]
gi|431039531|gb|ELD50351.1| cold shock-like protein CspC [Escherichia coli KTE220]
gi|431042653|gb|ELD53141.1| cold shock-like protein CspC [Escherichia coli KTE224]
gi|431051935|gb|ELD61597.1| cold shock-like protein CspC [Escherichia coli KTE228]
gi|431053025|gb|ELD62661.1| cold shock-like protein CspC [Escherichia coli KTE230]
gi|431054427|gb|ELD63997.1| cold shock-like protein CspC [Escherichia coli KTE233]
gi|431061218|gb|ELD70537.1| cold shock-like protein CspC [Escherichia coli KTE234]
gi|431069900|gb|ELD78220.1| cold shock-like protein CspC [Escherichia coli KTE235]
gi|431074934|gb|ELD82471.1| cold shock-like protein CspC [Escherichia coli KTE236]
gi|431080645|gb|ELD87440.1| cold shock-like protein CspC [Escherichia coli KTE237]
gi|431085081|gb|ELD91204.1| cold shock-like protein CspC [Escherichia coli KTE47]
gi|431091953|gb|ELD97661.1| cold shock-like protein CspC [Escherichia coli KTE49]
gi|431094613|gb|ELE00244.1| cold shock-like protein CspC [Escherichia coli KTE51]
gi|431100666|gb|ELE05636.1| cold shock-like protein CspC [Escherichia coli KTE53]
gi|431105400|gb|ELE09735.1| cold shock-like protein CspC [Escherichia coli KTE56]
gi|431108562|gb|ELE12534.1| cold shock-like protein CspC [Escherichia coli KTE55]
gi|431116282|gb|ELE19730.1| cold shock-like protein CspC [Escherichia coli KTE57]
gi|431120412|gb|ELE23410.1| cold shock-like protein CspC [Escherichia coli KTE58]
gi|431128016|gb|ELE30308.1| cold shock-like protein CspC [Escherichia coli KTE60]
gi|431130668|gb|ELE32751.1| cold shock-like protein CspC [Escherichia coli KTE62]
gi|431138743|gb|ELE40555.1| cold shock-like protein CspC [Escherichia coli KTE67]
gi|431140917|gb|ELE42682.1| cold shock-like protein CspC [Escherichia coli KTE66]
gi|431148981|gb|ELE50254.1| cold shock-like protein CspC [Escherichia coli KTE72]
gi|431155028|gb|ELE55789.1| cold shock-like protein CspC [Escherichia coli KTE75]
gi|431159721|gb|ELE60265.1| cold shock-like protein CspC [Escherichia coli KTE76]
gi|431164101|gb|ELE64502.1| cold shock-like protein CspC [Escherichia coli KTE77]
gi|431171026|gb|ELE71207.1| cold shock-like protein CspC [Escherichia coli KTE80]
gi|431172039|gb|ELE72190.1| cold shock-like protein CspC [Escherichia coli KTE81]
gi|431180358|gb|ELE80245.1| cold shock-like protein CspC [Escherichia coli KTE86]
gi|431183468|gb|ELE83284.1| cold shock-like protein CspC [Escherichia coli KTE83]
gi|431191125|gb|ELE90510.1| cold shock-like protein CspC [Escherichia coli KTE87]
gi|431191957|gb|ELE91331.1| cold shock-like protein CspC [Escherichia coli KTE93]
gi|431200172|gb|ELE98898.1| cold shock-like protein CspC [Escherichia coli KTE111]
gi|431201565|gb|ELF00262.1| cold shock-like protein CspC [Escherichia coli KTE116]
gi|431210977|gb|ELF08960.1| cold shock-like protein CspC [Escherichia coli KTE119]
gi|431215362|gb|ELF13058.1| cold shock-like protein CspC [Escherichia coli KTE142]
gi|431221333|gb|ELF18654.1| cold shock-like protein CspC [Escherichia coli KTE143]
gi|431222645|gb|ELF19921.1| cold shock-like protein CspC [Escherichia coli KTE156]
gi|431227237|gb|ELF24374.1| cold shock-like protein CspC [Escherichia coli KTE161]
gi|431234765|gb|ELF30159.1| cold shock-like protein CspC [Escherichia coli KTE162]
gi|431243885|gb|ELF38213.1| cold shock-like protein CspC [Escherichia coli KTE171]
gi|431244424|gb|ELF38732.1| cold shock-like protein CspC [Escherichia coli KTE169]
gi|431249520|gb|ELF43675.1| cold shock-like protein CspC [Escherichia coli KTE6]
gi|431257334|gb|ELF50258.1| cold shock-like protein CspC [Escherichia coli KTE8]
gi|431262752|gb|ELF54741.1| cold shock-like protein CspC [Escherichia coli KTE9]
gi|431265794|gb|ELF57356.1| cold shock-like protein CspC [Escherichia coli KTE17]
gi|431273516|gb|ELF64590.1| cold shock-like protein CspC [Escherichia coli KTE18]
gi|431275697|gb|ELF66724.1| cold shock-like protein CspC [Escherichia coli KTE45]
gi|431283209|gb|ELF74068.1| cold shock-like protein CspC [Escherichia coli KTE23]
gi|431284412|gb|ELF75270.1| cold shock-like protein CspC [Escherichia coli KTE42]
gi|431291936|gb|ELF82432.1| cold shock-like protein CspC [Escherichia coli KTE43]
gi|431297192|gb|ELF86850.1| cold shock-like protein CspC [Escherichia coli KTE29]
gi|431302763|gb|ELF91942.1| cold shock-like protein CspC [Escherichia coli KTE22]
gi|431308767|gb|ELF97046.1| cold shock-like protein CspC [Escherichia coli KTE46]
gi|431310939|gb|ELF99119.1| cold shock-like protein CspC [Escherichia coli KTE48]
gi|431315988|gb|ELG03887.1| cold shock-like protein CspC [Escherichia coli KTE50]
gi|431318625|gb|ELG06320.1| cold shock-like protein CspC [Escherichia coli KTE54]
gi|431326845|gb|ELG14190.1| cold shock-like protein CspC [Escherichia coli KTE59]
gi|431329568|gb|ELG16854.1| cold shock-like protein CspC [Escherichia coli KTE63]
gi|431337355|gb|ELG24443.1| cold shock-like protein CspC [Escherichia coli KTE65]
gi|431339771|gb|ELG26825.1| cold shock-like protein CspC [Escherichia coli KTE78]
gi|431343851|gb|ELG30807.1| cold shock-like protein CspC [Escherichia coli KTE79]
gi|431348950|gb|ELG35792.1| cold shock-like protein CspC [Escherichia coli KTE84]
gi|431354993|gb|ELG41707.1| cold shock-like protein CspC [Escherichia coli KTE91]
gi|431362233|gb|ELG48811.1| cold shock-like protein CspC [Escherichia coli KTE101]
gi|431364574|gb|ELG51105.1| cold shock-like protein CspC [Escherichia coli KTE115]
gi|431367921|gb|ELG54389.1| cold shock-like protein CspC [Escherichia coli KTE118]
gi|431372467|gb|ELG58129.1| cold shock-like protein CspC [Escherichia coli KTE123]
gi|431375773|gb|ELG61096.1| cold shock-like protein CspC [Escherichia coli KTE135]
gi|431385174|gb|ELG69161.1| cold shock-like protein CspC [Escherichia coli KTE136]
gi|431389598|gb|ELG73309.1| cold shock-like protein CspC [Escherichia coli KTE140]
gi|431394964|gb|ELG78477.1| cold shock-like protein CspC [Escherichia coli KTE141]
gi|431400129|gb|ELG83511.1| cold shock-like protein CspC [Escherichia coli KTE144]
gi|431405699|gb|ELG88932.1| cold shock-like protein CspC [Escherichia coli KTE146]
gi|431410938|gb|ELG94081.1| cold shock-like protein CspC [Escherichia coli KTE147]
gi|431411567|gb|ELG94678.1| cold shock-like protein CspC [Escherichia coli KTE154]
gi|431416808|gb|ELG99279.1| cold shock-like protein CspC [Escherichia coli KTE158]
gi|431422552|gb|ELH04744.1| cold shock-like protein CspC [Escherichia coli KTE165]
gi|431426447|gb|ELH08491.1| cold shock-like protein CspC [Escherichia coli KTE192]
gi|431433287|gb|ELH14959.1| cold shock-like protein CspC [Escherichia coli KTE194]
gi|431440290|gb|ELH21619.1| cold shock-like protein CspC [Escherichia coli KTE190]
gi|431444556|gb|ELH25578.1| cold shock-like protein CspC [Escherichia coli KTE173]
gi|431445276|gb|ELH26203.1| cold shock-like protein CspC [Escherichia coli KTE175]
gi|431453447|gb|ELH33854.1| cold shock-like protein CspC [Escherichia coli KTE184]
gi|431457669|gb|ELH38006.1| cold shock-like protein CspC [Escherichia coli KTE196]
gi|431464087|gb|ELH44209.1| cold shock-like protein CspC [Escherichia coli KTE183]
gi|431467927|gb|ELH47933.1| cold shock-like protein CspC [Escherichia coli KTE197]
gi|431471062|gb|ELH50955.1| cold shock-like protein CspC [Escherichia coli KTE203]
gi|431474798|gb|ELH54604.1| cold shock-like protein CspC [Escherichia coli KTE202]
gi|431480595|gb|ELH60314.1| cold shock-like protein CspC [Escherichia coli KTE209]
gi|431482679|gb|ELH62381.1| cold shock-like protein CspC [Escherichia coli KTE207]
gi|431491981|gb|ELH71584.1| cold shock-like protein CspC [Escherichia coli KTE211]
gi|431494910|gb|ELH74496.1| cold shock-like protein CspC [Escherichia coli KTE217]
gi|431500944|gb|ELH79930.1| cold shock-like protein CspC [Escherichia coli KTE215]
gi|431507195|gb|ELH85481.1| cold shock-like protein CspC [Escherichia coli KTE218]
gi|431510075|gb|ELH88322.1| cold shock-like protein CspC [Escherichia coli KTE223]
gi|431515176|gb|ELH93003.1| cold shock-like protein CspC [Escherichia coli KTE227]
gi|431524302|gb|ELI01249.1| cold shock-like protein CspC [Escherichia coli KTE229]
gi|431531944|gb|ELI08599.1| cold shock-like protein CspC [Escherichia coli KTE104]
gi|431533718|gb|ELI10217.1| cold shock-like protein CspC [Escherichia coli KTE105]
gi|431537238|gb|ELI13386.1| cold shock-like protein CspC [Escherichia coli KTE106]
gi|431543858|gb|ELI18824.1| cold shock-like protein CspC [Escherichia coli KTE109]
gi|431552203|gb|ELI26165.1| cold shock-like protein CspC [Escherichia coli KTE113]
gi|431553552|gb|ELI27478.1| cold shock-like protein CspC [Escherichia coli KTE112]
gi|431556745|gb|ELI30520.1| cold shock-like protein CspC [Escherichia coli KTE117]
gi|431566208|gb|ELI39247.1| cold shock-like protein CspC [Escherichia coli KTE120]
gi|431570849|gb|ELI43757.1| cold shock-like protein CspC [Escherichia coli KTE124]
gi|431571722|gb|ELI44592.1| cold shock-like protein CspC [Escherichia coli KTE122]
gi|431583050|gb|ELI55060.1| cold shock-like protein CspC [Escherichia coli KTE125]
gi|431585797|gb|ELI57744.1| cold shock-like protein CspC [Escherichia coli KTE128]
gi|431589052|gb|ELI60271.1| cold shock-like protein CspC [Escherichia coli KTE129]
gi|431597572|gb|ELI67478.1| cold shock-like protein CspC [Escherichia coli KTE131]
gi|431603014|gb|ELI72441.1| cold shock-like protein CspC [Escherichia coli KTE133]
gi|431607073|gb|ELI76444.1| cold shock-like protein CspC [Escherichia coli KTE137]
gi|431610778|gb|ELI80062.1| cold shock-like protein CspC [Escherichia coli KTE138]
gi|431616902|gb|ELI85925.1| cold shock-like protein CspC [Escherichia coli KTE139]
gi|431620408|gb|ELI89285.1| cold shock-like protein CspC [Escherichia coli KTE145]
gi|431628343|gb|ELI96719.1| cold shock-like protein CspC [Escherichia coli KTE150]
gi|431629229|gb|ELI97595.1| cold shock-like protein CspC [Escherichia coli KTE148]
gi|431635197|gb|ELJ03412.1| cold shock-like protein CspC [Escherichia coli KTE153]
gi|431643456|gb|ELJ11148.1| cold shock-like protein CspC [Escherichia coli KTE157]
gi|431646693|gb|ELJ14185.1| cold shock-like protein CspC [Escherichia coli KTE160]
gi|431647398|gb|ELJ14882.1| cold shock-like protein CspC [Escherichia coli KTE163]
gi|431657915|gb|ELJ24877.1| cold shock-like protein CspC [Escherichia coli KTE166]
gi|431661749|gb|ELJ28561.1| cold shock-like protein CspC [Escherichia coli KTE167]
gi|431662898|gb|ELJ29666.1| cold shock-like protein CspC [Escherichia coli KTE168]
gi|431671983|gb|ELJ38256.1| cold shock-like protein CspC [Escherichia coli KTE174]
gi|431675346|gb|ELJ41491.1| cold shock-like protein CspC [Escherichia coli KTE176]
gi|431679540|gb|ELJ45452.1| cold shock-like protein CspC [Escherichia coli KTE177]
gi|431688686|gb|ELJ54204.1| cold shock-like protein CspC [Escherichia coli KTE179]
gi|431689044|gb|ELJ54561.1| cold shock-like protein CspC [Escherichia coli KTE180]
gi|431693576|gb|ELJ58988.1| cold shock-like protein CspC [Escherichia coli KTE232]
gi|431704829|gb|ELJ69454.1| cold shock-like protein CspC [Escherichia coli KTE82]
gi|431706596|gb|ELJ71166.1| cold shock-like protein CspC [Escherichia coli KTE88]
gi|431707852|gb|ELJ72381.1| cold shock-like protein CspC [Escherichia coli KTE85]
gi|431717094|gb|ELJ81196.1| cold shock-like protein CspC [Escherichia coli KTE90]
gi|431722467|gb|ELJ86433.1| cold shock-like protein CspC [Escherichia coli KTE95]
gi|431723050|gb|ELJ87012.1| cold shock-like protein CspC [Escherichia coli KTE94]
gi|431730686|gb|ELJ94248.1| cold shock-like protein CspC [Escherichia coli KTE97]
gi|431734905|gb|ELJ98281.1| cold shock-like protein CspC [Escherichia coli KTE99]
gi|432348224|gb|ELL42675.1| Cold shock-like protein cspC [Escherichia coli J96]
gi|434940033|gb|ELL46743.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Pullorum str. ATCC 9120]
gi|434957654|gb|ELL51282.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22704]
gi|434960137|gb|ELL53544.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS44]
gi|434963958|gb|ELL56980.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1882]
gi|434973815|gb|ELL66203.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1884]
gi|434977193|gb|ELL69342.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1594]
gi|434986593|gb|ELL78244.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1566]
gi|434990208|gb|ELL81758.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1580]
gi|434995187|gb|ELL86504.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1441]
gi|434996266|gb|ELL87582.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1543]
gi|435001726|gb|ELL92815.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1810]
gi|435009568|gb|ELM00354.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1558]
gi|435014908|gb|ELM05465.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1010]
gi|435016241|gb|ELM06767.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1018]
gi|435025966|gb|ELM16097.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1729]
gi|435028179|gb|ELM18259.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0895]
gi|435032076|gb|ELM22020.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0899]
gi|435038511|gb|ELM28292.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1457]
gi|435043061|gb|ELM32778.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1747]
gi|435048504|gb|ELM38069.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1444]
gi|435052111|gb|ELM41613.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0968]
gi|435057667|gb|ELM47036.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1445]
gi|435062287|gb|ELM51469.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1559]
gi|435063520|gb|ELM52668.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1808]
gi|435068162|gb|ELM57191.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1565]
gi|435079457|gb|ELM68168.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1811]
gi|435082914|gb|ELM71525.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0956]
gi|435084407|gb|ELM72993.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1455]
gi|435090954|gb|ELM79355.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1575]
gi|435092591|gb|ELM80946.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1745]
gi|435094006|gb|ELM82345.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1725]
gi|435102700|gb|ELM90803.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1795]
gi|435105181|gb|ELM93218.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1791]
gi|435109848|gb|ELM97794.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 576709]
gi|435114121|gb|ELN01939.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 635290-58]
gi|435116985|gb|ELN04697.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-16]
gi|435120085|gb|ELN07687.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-19]
gi|435131254|gb|ELN18481.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-2]
gi|435134641|gb|ELN21767.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-9]
gi|435138171|gb|ELN25198.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629163]
gi|435142360|gb|ELN29271.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE15-1]
gi|435151915|gb|ELN38554.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_N202]
gi|435154926|gb|ELN41484.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_56-3991]
gi|435158736|gb|ELN45115.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_76-3618]
gi|435163705|gb|ELN49841.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_81-2490]
gi|435168695|gb|ELN54527.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL913]
gi|435177212|gb|ELN62544.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL909]
gi|435184384|gb|ELN69313.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_69-4941]
gi|435185930|gb|ELN70786.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 638970-15]
gi|435196749|gb|ELN81073.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 17927]
gi|435197898|gb|ELN82147.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS4]
gi|435199328|gb|ELN83436.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 22-17]
gi|435202898|gb|ELN86696.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13183-1]
gi|435209473|gb|ELN92793.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 40-18]
gi|435210516|gb|ELN93770.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22558]
gi|435219166|gb|ELO01529.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 1-1]
gi|435221249|gb|ELO03522.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 4-1]
gi|435224923|gb|ELO06862.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642046 4-7]
gi|435239181|gb|ELO19788.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648898 4-5]
gi|435244883|gb|ELO24990.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648900 1-16]
gi|435245086|gb|ELO25173.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 1-17]
gi|435245499|gb|ELO25584.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648899 3-17]
gi|435253552|gb|ELO33022.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 39-2]
gi|435261157|gb|ELO40318.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648902 6-8]
gi|435263868|gb|ELO42901.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648903 1-6]
gi|435264464|gb|ELO43380.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648904 3-6]
gi|435271065|gb|ELO49545.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 653049 13-19]
gi|435277735|gb|ELO55667.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 9-7]
gi|435277958|gb|ELO55836.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 8-1]
gi|435287888|gb|ELO64993.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 42-20]
gi|435293483|gb|ELO70176.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 16-16]
gi|435296659|gb|ELO73022.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 33944]
gi|435298190|gb|ELO74432.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. SARB17]
gi|435307487|gb|ELO82625.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 76-2651]
gi|435316740|gb|ELO89853.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 81-2625]
gi|435324672|gb|ELO96600.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 62-1976]
gi|435330439|gb|ELP01705.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 53-407]
gi|435338315|gb|ELP07637.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 50-5646]
gi|435338494|gb|ELP07746.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 6.0562-1]
gi|436412863|gb|ELP10801.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Agona str. SH10GFN094]
gi|436415455|gb|ELP13374.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Agona str. SH11G1113]
gi|436418071|gb|ELP15957.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Agona str. SH08SF124]
gi|440046756|gb|AGB77814.1| cold shock protein [Enterobacteriaceae bacterium strain FGI 57]
gi|441609554|emb|CCP94968.1| Cold shock protein CspC [Escherichia coli O10:K5(L):H4 str. ATCC
23506]
gi|441653247|emb|CCQ01710.1| Cold shock protein CspC [Escherichia coli O5:K4(L):H4 str. ATCC
23502]
gi|441714745|emb|CCQ05310.1| Cold shock protein CspC [Escherichia coli Nissle 1917]
gi|443422408|gb|AGC87312.1| Cold shock-like protein cspC [Escherichia coli APEC O78]
gi|443901701|emb|CCG29475.1| Cold shock protein CspC [Enterobacter aerogenes EA1509E]
gi|444539981|gb|ELV19688.1| cold shock-like protein CspC [Escherichia coli 99.0814]
gi|444542784|gb|ELV22120.1| cold shock-like protein CspC [Escherichia coli 09BKT078844]
gi|444548770|gb|ELV27126.1| cold shock-like protein CspC [Escherichia coli 99.0815]
gi|444559836|gb|ELV37037.1| cold shock-like protein CspC [Escherichia coli 99.0839]
gi|444561774|gb|ELV38877.1| cold shock-like protein CspC [Escherichia coli 99.0816]
gi|444565873|gb|ELV42716.1| cold shock-like protein CspC [Escherichia coli 99.0848]
gi|444575573|gb|ELV51809.1| cold shock-like protein CspC [Escherichia coli 99.1753]
gi|444579602|gb|ELV55588.1| cold shock-like protein CspC [Escherichia coli 99.1775]
gi|444581700|gb|ELV57538.1| cold shock-like protein CspC [Escherichia coli 99.1793]
gi|444595298|gb|ELV70402.1| cold shock-like protein CspC [Escherichia coli PA11]
gi|444595478|gb|ELV70580.1| cold shock-like protein CspC [Escherichia coli ATCC 700728]
gi|444598205|gb|ELV73141.1| cold shock-like protein CspC [Escherichia coli 99.1805]
gi|444609124|gb|ELV83583.1| cold shock-like protein CspC [Escherichia coli PA19]
gi|444609495|gb|ELV83953.1| cold shock-like protein CspC [Escherichia coli PA13]
gi|444617397|gb|ELV91513.1| cold shock-like protein CspC [Escherichia coli PA2]
gi|444626306|gb|ELW00102.1| cold shock-like protein CspC [Escherichia coli PA47]
gi|444626687|gb|ELW00479.1| cold shock-like protein CspC [Escherichia coli PA48]
gi|444631867|gb|ELW05450.1| cold shock-like protein CspC [Escherichia coli PA8]
gi|444641158|gb|ELW14397.1| cold shock-like protein CspC [Escherichia coli 7.1982]
gi|444644093|gb|ELW17217.1| cold shock-like protein CspC [Escherichia coli 99.1781]
gi|444647366|gb|ELW20340.1| cold shock-like protein CspC [Escherichia coli 99.1762]
gi|444655978|gb|ELW28514.1| cold shock-like protein CspC [Escherichia coli PA35]
gi|444662793|gb|ELW35045.1| cold shock-like protein CspC [Escherichia coli 3.4880]
gi|444667602|gb|ELW39636.1| cold shock-like protein CspC [Escherichia coli 95.0083]
gi|444670988|gb|ELW42827.1| cold shock-like protein CspC [Escherichia coli 99.0670]
gi|444846434|gb|ELX71610.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Dublin str. HWS51]
gi|444851052|gb|ELX76147.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Dublin str. SL1438]
gi|444854334|gb|ELX79398.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Gallinarum str. 9184]
gi|444860663|gb|ELX85572.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 20037]
gi|444870199|gb|ELX94725.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE10]
gi|444875779|gb|ELX99976.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13-1]
gi|444877672|gb|ELY01811.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 18569]
gi|444883140|gb|ELY07045.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. PT23]
gi|444888176|gb|ELY11789.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. 436]
gi|448873037|gb|EMB08156.1| Cold shock-like protein cspC [Klebsiella pneumoniae hvKP1]
gi|449318963|gb|EMD09020.1| Cold shock-like protein cspC [Escherichia coli O08]
gi|449321164|gb|EMD11179.1| Cold shock-like protein cspC [Escherichia coli S17]
gi|449321891|gb|EMD11898.1| Cold shock-like protein cspC [Escherichia coli SEPT362]
gi|449327970|gb|AGE94271.1| cold shock protein CspC [Citrobacter amalonaticus Y19]
gi|451908977|gb|AGF80783.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Javiana str. CFSAN001992]
gi|455645843|gb|EMF24886.1| Cold shock-like protein cspC [Citrobacter freundii GTC 09479]
Length = 69
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 4/68 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
++G VK+++ +GFGFIT D +D+FVH S+I F++L G+ V+F I G+K
Sbjct: 4 IKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNG----FKTLAEGQNVEFEIQDGQK 59
Query: 69 DIEAINVT 76
A+NVT
Sbjct: 60 GPAAVNVT 67
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 4/68 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
++G VK+++ +GFGFIT D +D+FVH S+I F++L G+ V+F I G+K
Sbjct: 4 IKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNG----FKTLAEGQNVEFEIQDGQK 59
Query: 170 DIEAINVT 177
A+NVT
Sbjct: 60 GPAAVNVT 67
>gi|149046920|gb|EDL99668.1| rCG58531, isoform CRA_b [Rattus norvegicus]
Length = 316
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 11/87 (12%)
Query: 112 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 164
G K+++ + GFGFI+ LD D+FVH+S + + F+SL GE V+F
Sbjct: 75 GHCKWFNVRMGFGFISMISREGNPLDIPVDVFVHQSKLFM----EGFRSLKEGEPVEFTF 130
Query: 165 GVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP G P G+ + P
Sbjct: 131 KKSPKGLESIRVTGPGGNPCLGSERRP 157
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 13/95 (13%)
Query: 1 MTKFEIHTVRGI--VKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQ 51
+ + E +RG K+++ + GFGFI+ LD D+FVH+S + + F+
Sbjct: 63 LAEDESQVLRGTGHCKWFNVRMGFGFISMISREGNPLDIPVDVFVHQSKLFM----EGFR 118
Query: 52 SLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGA 86
SL GE V+F K +E+I VTGP G P G+
Sbjct: 119 SLKEGEPVEFTFKKSPKGLESIRVTGPGGNPCLGS 153
>gi|238782953|ref|ZP_04626981.1| Cold shock-like protein cspI [Yersinia bercovieri ATCC 43970]
gi|332163162|ref|YP_004299739.1| cold shock-like protein cspG [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|386310172|ref|YP_006006228.1| cold shock protein CspG [Yersinia enterocolitica subsp.
palearctica Y11]
gi|418242201|ref|ZP_12868716.1| cold shock-like protein cspG [Yersinia enterocolitica subsp.
palearctica PhRBD_Ye1]
gi|433550741|ref|ZP_20506784.1| major cold shock protein CspA1 [Yersinia enterocolitica IP 10393]
gi|6073870|gb|AAB40923.2| major cold shock protein CSPA1 [Yersinia enterocolitica]
gi|238716156|gb|EEQ08140.1| Cold shock-like protein cspI [Yersinia bercovieri ATCC 43970]
gi|318603954|emb|CBY25452.1| cold shock protein CspG [Yersinia enterocolitica subsp.
palearctica Y11]
gi|325667392|gb|ADZ44036.1| cold shock-like protein cspG [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|330862837|emb|CBX72978.1| cold shock-like protein cspB [Yersinia enterocolitica W22703]
gi|351778338|gb|EHB20497.1| cold shock-like protein cspG [Yersinia enterocolitica subsp.
palearctica PhRBD_Ye1]
gi|431787840|emb|CCO69824.1| major cold shock protein CspA1 [Yersinia enterocolitica IP 10393]
Length = 70
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 44/67 (65%), Gaps = 4/67 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+ G+VK++D+ +GFGFIT D +D+FVH S+I + F++L G+ V+F+I G K
Sbjct: 5 MTGLVKWFDAGKGFGFITPADGSKDVFVHFSAIQSND----FKTLDEGQKVEFSIENGAK 60
Query: 69 DIEAINV 75
A+NV
Sbjct: 61 GPSAVNV 67
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 44/67 (65%), Gaps = 4/67 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+ G+VK++D+ +GFGFIT D +D+FVH S+I + F++L G+ V+F+I G K
Sbjct: 5 MTGLVKWFDAGKGFGFITPADGSKDVFVHFSAIQSND----FKTLDEGQKVEFSIENGAK 60
Query: 170 DIEAINV 176
A+NV
Sbjct: 61 GPSAVNV 67
>gi|420260192|ref|ZP_14762879.1| major cold shock protein Cspa1 [Yersinia enterocolitica subsp.
enterocolitica WA-314]
gi|404512406|gb|EKA26254.1| major cold shock protein Cspa1 [Yersinia enterocolitica subsp.
enterocolitica WA-314]
Length = 70
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 44/67 (65%), Gaps = 4/67 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+ G+VK++D+ +GFGFIT D +D+FVH S+I + F++L G+ V+F+I G K
Sbjct: 5 MTGLVKWFDAGKGFGFITPADGSKDVFVHFSAIQSND----FKTLDEGQKVEFSIENGAK 60
Query: 69 DIEAINV 75
A+NV
Sbjct: 61 GPSAVNV 67
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 44/67 (65%), Gaps = 4/67 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+ G+VK++D+ +GFGFIT D +D+FVH S+I + F++L G+ V+F+I G K
Sbjct: 5 MTGLVKWFDAGKGFGFITPADGSKDVFVHFSAIQSND----FKTLDEGQKVEFSIENGAK 60
Query: 170 DIEAINV 176
A+NV
Sbjct: 61 GPSAVNV 67
>gi|383784454|ref|YP_005469024.1| cold shock protein [Leptospirillum ferrooxidans C2-3]
gi|383083367|dbj|BAM06894.1| cold shock protein [Leptospirillum ferrooxidans C2-3]
Length = 68
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 46/71 (64%), Gaps = 5/71 (7%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
RG VK++++ +G+GFI++ +N EDIFVH ++I F++L G++V+F I G K
Sbjct: 2 ARGHVKWFNANKGYGFISQ-ENGEDIFVHYTAI----GGSGFKTLEEGQLVEFEIQSGSK 56
Query: 69 DIEAINVTGPN 79
+A NVT N
Sbjct: 57 GPQAANVTKVN 67
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 46/71 (64%), Gaps = 5/71 (7%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
RG VK++++ +G+GFI++ +N EDIFVH ++I F++L G++V+F I G K
Sbjct: 2 ARGHVKWFNANKGYGFISQ-ENGEDIFVHYTAI----GGSGFKTLEEGQLVEFEIQSGSK 56
Query: 170 DIEAINVTGPN 180
+A NVT N
Sbjct: 57 GPQAANVTKVN 67
>gi|424780626|ref|ZP_18207499.1| putative cold-shock DNA-binding domain-containing protein
[Catellicoccus marimammalium M35/04/3]
gi|422843028|gb|EKU27475.1| putative cold-shock DNA-binding domain-containing protein
[Catellicoccus marimammalium M35/04/3]
Length = 67
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 43/67 (64%), Gaps = 5/67 (7%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 69
+GIVK++++++GFGFIT+ D EDIFVH ++I ++SL GE V F I G+
Sbjct: 3 QGIVKWFNNRKGFGFITKEDG-EDIFVHYTAICDNG----YRSLARGEHVTFEIAEGEHG 57
Query: 70 IEAINVT 76
+A VT
Sbjct: 58 PQAYQVT 64
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 43/67 (64%), Gaps = 5/67 (7%)
Query: 111 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 170
+GIVK++++++GFGFIT+ D EDIFVH ++I ++SL GE V F I G+
Sbjct: 3 QGIVKWFNNRKGFGFITKEDG-EDIFVHYTAICDNG----YRSLARGEHVTFEIAEGEHG 57
Query: 171 IEAINVT 177
+A VT
Sbjct: 58 PQAYQVT 64
>gi|407279941|ref|ZP_11108411.1| cold shock protein [Rhodococcus sp. P14]
Length = 67
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 4/66 (6%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 69
G+VK++D ++GFGFI + DIFVH S I F+SL G+ V+F +G+G K
Sbjct: 3 EGVVKWFDEEKGFGFIAQDGGGPDIFVHYSEIAGTG----FRSLTEGQRVEFEVGLGVKG 58
Query: 70 IEAINV 75
+A NV
Sbjct: 59 PQAENV 64
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 4/66 (6%)
Query: 111 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 170
G+VK++D ++GFGFI + DIFVH S I F+SL G+ V+F +G+G K
Sbjct: 3 EGVVKWFDEEKGFGFIAQDGGGPDIFVHYSEIAGTG----FRSLTEGQRVEFEVGLGVKG 58
Query: 171 IEAINV 176
+A NV
Sbjct: 59 PQAENV 64
>gi|260598298|ref|YP_003210869.1| Cold shock-like protein cspC [Cronobacter turicensis z3032]
gi|260217475|emb|CBA31616.1| Cold shock-like protein cspC [Cronobacter turicensis z3032]
Length = 106
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 4/73 (5%)
Query: 5 EIHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIG 64
E+ ++G VK+++ +GFGFIT D +D+FVH S+I F++L G+ V+F I
Sbjct: 37 EMAKIKGQVKWFNESKGFGFITPADGSKDVFVHFSAI----QGNGFKTLAEGQNVEFEIQ 92
Query: 65 VGKKDIEAINVTG 77
G+K A+NV
Sbjct: 93 DGQKGPAAVNVVA 105
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
++G VK+++ +GFGFIT D +D+FVH S+I F++L G+ V+F I G+K
Sbjct: 41 IKGQVKWFNESKGFGFITPADGSKDVFVHFSAI----QGNGFKTLAEGQNVEFEIQDGQK 96
Query: 170 DIEAINVTG 178
A+NV
Sbjct: 97 GPAAVNVVA 105
>gi|156933606|ref|YP_001437522.1| hypothetical protein ESA_01428 [Cronobacter sakazakii ATCC
BAA-894]
gi|156531860|gb|ABU76686.1| hypothetical protein ESA_01428 [Cronobacter sakazakii ATCC
BAA-894]
Length = 90
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 5 EIHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIG 64
E+ ++G VK+++ +GFGFIT D +D+FVH S+I F++L G+ V+F I
Sbjct: 21 EMAKIKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNG----FKTLAEGQNVEFEIQ 76
Query: 65 VGKKDIEAINV 75
G+K A+NV
Sbjct: 77 DGQKGPAAVNV 87
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 4/67 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
++G VK+++ +GFGFIT D +D+FVH S+I F++L G+ V+F I G+K
Sbjct: 25 IKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNG----FKTLAEGQNVEFEIQDGQK 80
Query: 170 DIEAINV 176
A+NV
Sbjct: 81 GPAAVNV 87
>gi|154248732|ref|YP_001409557.1| cold-shock DNA-binding domain-containing protein
[Fervidobacterium nodosum Rt17-B1]
gi|154152668|gb|ABS59900.1| putative cold-shock DNA-binding domain protein [Fervidobacterium
nodosum Rt17-B1]
Length = 66
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 46/67 (68%), Gaps = 5/67 (7%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
++G VK++D+K+G+GFIT+ D EDIFVH S+I + +++L G+ V+F + G+K
Sbjct: 1 MKGTVKWFDAKKGYGFITKEDG-EDIFVHYSAI----QAEGYKTLKEGDKVEFEVQNGQK 55
Query: 69 DIEAINV 75
+A NV
Sbjct: 56 GPQAANV 62
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 46/67 (68%), Gaps = 5/67 (7%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
++G VK++D+K+G+GFIT+ D EDIFVH S+I + +++L G+ V+F + G+K
Sbjct: 1 MKGTVKWFDAKKGYGFITKEDG-EDIFVHYSAI----QAEGYKTLKEGDKVEFEVQNGQK 55
Query: 170 DIEAINV 176
+A NV
Sbjct: 56 GPQAANV 62
>gi|323452553|gb|EGB08427.1| hypothetical protein AURANDRAFT_16921, partial [Aureococcus
anophagefferens]
Length = 70
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 5/74 (6%)
Query: 16 YDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIE-AIN 74
+++ +G+GFIT + D+FVH++ I + F+SL GE V+F I + + E A++
Sbjct: 1 FNTVKGYGFITPDNGGGDVFVHQTQIY----ARGFRSLAEGENVEFEIEMDQNGRERAVS 56
Query: 75 VTGPNGIPVQGAPK 88
VTGP G VQGAP+
Sbjct: 57 VTGPEGDYVQGAPR 70
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 5/74 (6%)
Query: 117 YDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIE-AIN 175
+++ +G+GFIT + D+FVH++ I + F+SL GE V+F I + + E A++
Sbjct: 1 FNTVKGYGFITPDNGGGDVFVHQTQIY----ARGFRSLAEGENVEFEIEMDQNGRERAVS 56
Query: 176 VTGPNGIPVQGAPK 189
VTGP G VQGAP+
Sbjct: 57 VTGPEGDYVQGAPR 70
>gi|22124144|ref|NP_667567.1| cold shock-like protein [Yersinia pestis KIM10+]
gi|45443633|ref|NP_995172.1| cold shock-like protein [Yersinia pestis biovar Microtus str.
91001]
gi|21956899|gb|AAM83818.1|AE013622_7 cold shock-like protein [Yersinia pestis KIM10+]
gi|45438503|gb|AAS64049.1| cold shock-like protein [Yersinia pestis biovar Microtus str.
91001]
Length = 95
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 44/67 (65%), Gaps = 4/67 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+ G+VK++D+ +GFGFIT D +D+FVH S+I + F++L G+ V+F+I G K
Sbjct: 30 MTGLVKWFDAGKGFGFITPADGSKDVFVHFSAIQSND----FKTLDEGQNVEFSIENGAK 85
Query: 69 DIEAINV 75
A+NV
Sbjct: 86 GPAAVNV 92
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 44/67 (65%), Gaps = 4/67 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+ G+VK++D+ +GFGFIT D +D+FVH S+I + F++L G+ V+F+I G K
Sbjct: 30 MTGLVKWFDAGKGFGFITPADGSKDVFVHFSAIQSND----FKTLDEGQNVEFSIENGAK 85
Query: 170 DIEAINV 176
A+NV
Sbjct: 86 GPAAVNV 92
>gi|375092169|ref|ZP_09738454.1| hypothetical protein HMPREF9709_01316 [Helcococcus kunzii ATCC
51366]
gi|374561935|gb|EHR33272.1| hypothetical protein HMPREF9709_01316 [Helcococcus kunzii ATCC
51366]
Length = 66
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 46/66 (69%), Gaps = 5/66 (7%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 69
+G VK++++++GFGFIT DNK D+FVH+SSI + F+SL GE V ++I ++
Sbjct: 3 KGTVKWFNNEKGFGFITGEDNK-DLFVHQSSI----QAEGFRSLEEGESVSYDIERDQRG 57
Query: 70 IEAINV 75
+A+NV
Sbjct: 58 AKAVNV 63
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 46/66 (69%), Gaps = 5/66 (7%)
Query: 111 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 170
+G VK++++++GFGFIT DNK D+FVH+SSI + F+SL GE V ++I ++
Sbjct: 3 KGTVKWFNNEKGFGFITGEDNK-DLFVHQSSI----QAEGFRSLEEGESVSYDIERDQRG 57
Query: 171 IEAINV 176
+A+NV
Sbjct: 58 AKAVNV 63
>gi|340781242|ref|YP_004747849.1| cold-shock DNA-binding domain-containing protein
[Acidithiobacillus caldus SM-1]
gi|340555395|gb|AEK57149.1| cold-shock DNA-binding domain protein [Acidithiobacillus caldus
SM-1]
Length = 67
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 4/65 (6%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 70
G VK+++ +GFGFIT D KED+FVH S+I F++L GE V F + G K +
Sbjct: 4 GTVKWFNDSKGFGFITPEDGKEDVFVHHSAIEGTG----FKTLAEGERVSFEVTRGPKGL 59
Query: 71 EAINV 75
+A V
Sbjct: 60 QAEKV 64
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 4/65 (6%)
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 171
G VK+++ +GFGFIT D KED+FVH S+I F++L GE V F + G K +
Sbjct: 4 GTVKWFNDSKGFGFITPEDGKEDVFVHHSAIEGTG----FKTLAEGERVSFEVTRGPKGL 59
Query: 172 EAINV 176
+A V
Sbjct: 60 QAEKV 64
>gi|293345049|ref|XP_002725925.1| PREDICTED: protein lin-28 homolog B isoform 1 [Rattus norvegicus]
gi|293356922|ref|XP_001069344.2| PREDICTED: protein lin-28 homolog B isoform 1 [Rattus norvegicus]
Length = 271
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 11/87 (12%)
Query: 112 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 164
G K+++ + GFGFI+ LD D+FVH+S + + F+SL GE V+F
Sbjct: 30 GHCKWFNVRMGFGFISMISREGNPLDIPVDVFVHQSKLFM----EGFRSLKEGEPVEFTF 85
Query: 165 GVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP G P G+ + P
Sbjct: 86 KKSPKGLESIRVTGPGGNPCLGSERRP 112
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 13/95 (13%)
Query: 1 MTKFEIHTVRGI--VKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQ 51
+ + E +RG K+++ + GFGFI+ LD D+FVH+S + + F+
Sbjct: 18 LAEDESQVLRGTGHCKWFNVRMGFGFISMISREGNPLDIPVDVFVHQSKLFM----EGFR 73
Query: 52 SLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGA 86
SL GE V+F K +E+I VTGP G P G+
Sbjct: 74 SLKEGEPVEFTFKKSPKGLESIRVTGPGGNPCLGS 108
>gi|378578530|ref|ZP_09827205.1| CspG family cold shock protein [Pantoea stewartii subsp.
stewartii DC283]
gi|377818810|gb|EHU01891.1| CspG family cold shock protein [Pantoea stewartii subsp.
stewartii DC283]
Length = 70
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 44/69 (63%), Gaps = 4/69 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+RG VK++++++GFGFI+ D +D+FVH S+I + F++L G+ V+F + G K
Sbjct: 5 IRGTVKWFNAEKGFGFISPQDGSKDVFVHFSAIQGTD----FRTLDEGQQVEFTVENGAK 60
Query: 69 DIEAINVTG 77
A NV G
Sbjct: 61 GPAAANVVG 69
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 44/69 (63%), Gaps = 4/69 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+RG VK++++++GFGFI+ D +D+FVH S+I + F++L G+ V+F + G K
Sbjct: 5 IRGTVKWFNAEKGFGFISPQDGSKDVFVHFSAIQGTD----FRTLDEGQQVEFTVENGAK 60
Query: 170 DIEAINVTG 178
A NV G
Sbjct: 61 GPAAANVVG 69
>gi|120554260|ref|YP_958611.1| cold-shock DNA-binding domain-containing protein [Marinobacter
aquaeolei VT8]
gi|387814471|ref|YP_005429956.1| cold-shock protein [Marinobacter hydrocarbonoclasticus ATCC
49840]
gi|120324109|gb|ABM18424.1| cold-shock DNA-binding protein family [Marinobacter aquaeolei
VT8]
gi|381339486|emb|CCG95533.1| DNA-binding transcriptional repressor, Cold shock-like protein
[Marinobacter hydrocarbonoclasticus ATCC 49840]
Length = 68
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 5/72 (6%)
Query: 6 IHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGV 65
+ TV G VKF++ +GFGFITR + D+FVH S+I F++L G+ V+F +
Sbjct: 1 MSTVTGTVKFFNESKGFGFITR-EGGPDVFVHYSAIQGGG----FKTLAEGQQVEFTVTQ 55
Query: 66 GKKDIEAINVTG 77
G+K +A NV G
Sbjct: 56 GQKGPQAENVVG 67
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 5/72 (6%)
Query: 107 VHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGV 166
+ TV G VKF++ +GFGFITR + D+FVH S+I F++L G+ V+F +
Sbjct: 1 MSTVTGTVKFFNESKGFGFITR-EGGPDVFVHYSAIQGGG----FKTLAEGQQVEFTVTQ 55
Query: 167 GKKDIEAINVTG 178
G+K +A NV G
Sbjct: 56 GQKGPQAENVVG 67
>gi|45443632|ref|NP_995171.1| cold-shock protein CspA [Yersinia pestis biovar Microtus str.
91001]
gi|145597567|ref|YP_001161643.1| major cold shock protein Cspa1 [Yersinia pestis Pestoides F]
gi|153997418|ref|ZP_02022518.1| major cold shock protein Cspa1 [Yersinia pestis CA88-4125]
gi|162420218|ref|YP_001605761.1| cold shock DNA-binding domain-containing protein [Yersinia pestis
Angola]
gi|165927555|ref|ZP_02223387.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165937557|ref|ZP_02226120.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Orientalis str. IP275]
gi|166012240|ref|ZP_02233138.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166214174|ref|ZP_02240209.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Antiqua str. B42003004]
gi|167401977|ref|ZP_02307460.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167420574|ref|ZP_02312327.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167425550|ref|ZP_02317303.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|170022695|ref|YP_001719200.1| cold-shock DNA-binding domain-containing protein [Yersinia
pseudotuberculosis YPIII]
gi|218930654|ref|YP_002348529.1| cold-shock protein CspA [Yersinia pestis CO92]
gi|229836787|ref|ZP_04456952.1| major cold shock protein Cspa1 [Yersinia pestis Pestoides A]
gi|229839313|ref|ZP_04459472.1| major cold shock protein Cspa1 [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229899877|ref|ZP_04515018.1| major cold shock protein Cspa1 [Yersinia pestis biovar Orientalis
str. India 195]
gi|229904188|ref|ZP_04519299.1| major cold shock protein Cspa1 [Yersinia pestis Nepal516]
gi|270488627|ref|ZP_06205701.1| transcriptional repressor activity CueR [Yersinia pestis KIM D27]
gi|384138501|ref|YP_005521203.1| major cold shock protein Cspa1 [Yersinia pestis A1122]
gi|384416689|ref|YP_005626051.1| major cold shock protein Cspa1 [Yersinia pestis biovar Medievalis
str. Harbin 35]
gi|420548804|ref|ZP_15046575.1| cold shock-like protein CspG [Yersinia pestis PY-01]
gi|420554158|ref|ZP_15051351.1| cold shock-like protein CspG [Yersinia pestis PY-02]
gi|420559770|ref|ZP_15056226.1| cold shock-like protein CspG [Yersinia pestis PY-03]
gi|420565152|ref|ZP_15061064.1| cold shock-like protein CspG [Yersinia pestis PY-04]
gi|420570190|ref|ZP_15065641.1| cold shock-like protein CspG [Yersinia pestis PY-05]
gi|420575861|ref|ZP_15070771.1| cold shock-like protein CspG [Yersinia pestis PY-06]
gi|420581162|ref|ZP_15075593.1| cold shock-like protein CspG [Yersinia pestis PY-07]
gi|420586537|ref|ZP_15080455.1| cold shock-like protein CspG [Yersinia pestis PY-08]
gi|420591637|ref|ZP_15085045.1| cold shock-like protein CspG [Yersinia pestis PY-09]
gi|420597016|ref|ZP_15089880.1| cold shock-like protein CspG [Yersinia pestis PY-10]
gi|420602717|ref|ZP_15094942.1| cold shock-like protein CspG [Yersinia pestis PY-11]
gi|420608078|ref|ZP_15099810.1| cold shock-like protein CspG [Yersinia pestis PY-12]
gi|420613504|ref|ZP_15104668.1| cold shock-like protein CspG [Yersinia pestis PY-13]
gi|420618868|ref|ZP_15109345.1| 'Cold-shock' DNA-binding domain protein [Yersinia pestis PY-14]
gi|420624177|ref|ZP_15114127.1| cold shock-like protein CspG [Yersinia pestis PY-15]
gi|420625898|ref|ZP_15115700.1| cold shock-like protein CspG [Yersinia pestis PY-16]
gi|420631079|ref|ZP_15120388.1| cold shock-like protein CspG [Yersinia pestis PY-19]
gi|420639594|ref|ZP_15128021.1| cold shock-like protein CspG [Yersinia pestis PY-25]
gi|420645044|ref|ZP_15133005.1| cold shock-like protein CspG [Yersinia pestis PY-29]
gi|420650354|ref|ZP_15137789.1| cold shock-like protein CspG [Yersinia pestis PY-32]
gi|420655992|ref|ZP_15142864.1| cold shock-like protein CspG [Yersinia pestis PY-34]
gi|420661425|ref|ZP_15147713.1| cold shock-like protein CspG [Yersinia pestis PY-36]
gi|420666780|ref|ZP_15152542.1| cold shock-like protein CspG [Yersinia pestis PY-42]
gi|420671638|ref|ZP_15156973.1| 'Cold-shock' DNA-binding domain protein [Yersinia pestis PY-45]
gi|420676973|ref|ZP_15161825.1| cold shock-like protein CspG [Yersinia pestis PY-46]
gi|420682538|ref|ZP_15166844.1| cold shock-like protein CspG [Yersinia pestis PY-47]
gi|420687943|ref|ZP_15171652.1| cold shock-like protein CspG [Yersinia pestis PY-48]
gi|420689638|ref|ZP_15173155.1| cold shock-like protein CspG [Yersinia pestis PY-52]
gi|420698946|ref|ZP_15181317.1| cold shock-like protein CspG [Yersinia pestis PY-53]
gi|420704806|ref|ZP_15185952.1| 'Cold-shock' DNA-binding domain protein [Yersinia pestis PY-54]
gi|420710098|ref|ZP_15190686.1| cold shock-like protein CspG [Yersinia pestis PY-55]
gi|420715601|ref|ZP_15195564.1| cold shock-like protein CspG [Yersinia pestis PY-56]
gi|420721122|ref|ZP_15200290.1| cold shock-like protein CspG [Yersinia pestis PY-58]
gi|420726576|ref|ZP_15205102.1| cold shock-like protein CspG [Yersinia pestis PY-59]
gi|420732101|ref|ZP_15210071.1| cold shock-like protein CspG [Yersinia pestis PY-60]
gi|420737068|ref|ZP_15214559.1| cold shock-like protein CspG [Yersinia pestis PY-61]
gi|420742547|ref|ZP_15219483.1| cold shock-like protein CspG [Yersinia pestis PY-63]
gi|420748422|ref|ZP_15224424.1| cold shock-like protein CspG [Yersinia pestis PY-64]
gi|420753695|ref|ZP_15229160.1| cold shock-like protein CspG [Yersinia pestis PY-65]
gi|420759645|ref|ZP_15233928.1| cold shock-like protein CspG [Yersinia pestis PY-66]
gi|420764853|ref|ZP_15238536.1| cold shock-like protein CspG [Yersinia pestis PY-71]
gi|420766802|ref|ZP_15240303.1| cold shock-like protein CspG [Yersinia pestis PY-72]
gi|420775063|ref|ZP_15247739.1| cold shock-like protein CspG [Yersinia pestis PY-76]
gi|420776892|ref|ZP_15249363.1| cold shock-like protein CspG [Yersinia pestis PY-88]
gi|420786292|ref|ZP_15257579.1| cold shock-like protein CspG [Yersinia pestis PY-89]
gi|420791343|ref|ZP_15262120.1| 'Cold-shock' DNA-binding domain protein [Yersinia pestis PY-90]
gi|420796912|ref|ZP_15267133.1| cold shock-like protein CspG [Yersinia pestis PY-91]
gi|420802009|ref|ZP_15271708.1| cold shock-like protein CspG [Yersinia pestis PY-92]
gi|420807350|ref|ZP_15276554.1| cold shock-like protein CspG [Yersinia pestis PY-93]
gi|420812734|ref|ZP_15281376.1| 'Cold-shock' DNA-binding domain protein [Yersinia pestis PY-94]
gi|420818227|ref|ZP_15286357.1| cold shock-like protein CspG [Yersinia pestis PY-95]
gi|420823559|ref|ZP_15291124.1| cold shock-like protein CspG [Yersinia pestis PY-96]
gi|420828624|ref|ZP_15295687.1| cold shock-like protein CspG [Yersinia pestis PY-98]
gi|420834221|ref|ZP_15300739.1| cold shock-like protein CspG [Yersinia pestis PY-99]
gi|420835859|ref|ZP_15302223.1| cold shock-like protein CspG [Yersinia pestis PY-100]
gi|420841006|ref|ZP_15306884.1| cold shock-like protein CspG [Yersinia pestis PY-101]
gi|420846624|ref|ZP_15311961.1| cold shock-like protein CspG [Yersinia pestis PY-102]
gi|420855720|ref|ZP_15319815.1| cold shock-like protein CspG [Yersinia pestis PY-103]
gi|420860818|ref|ZP_15324311.1| cold shock-like protein CspG [Yersinia pestis PY-113]
gi|421765158|ref|ZP_16201945.1| major cold shock protein Cspa1 [Yersinia pestis INS]
gi|45438502|gb|AAS64048.1| major cold shock protein Cspa1 [Yersinia pestis biovar Microtus
str. 91001]
gi|115349265|emb|CAL22232.1| major cold shock protein Cspa1 [Yersinia pestis CO92]
gi|145209263|gb|ABP38670.1| cold-shock DNA-binding protein family [Yersinia pestis Pestoides
F]
gi|149289055|gb|EDM39135.1| major cold shock protein Cspa1 [Yersinia pestis CA88-4125]
gi|162353033|gb|ABX86981.1| cold shock DNA-binding domain protein [Yersinia pestis Angola]
gi|165914662|gb|EDR33276.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Orientalis str. IP275]
gi|165920449|gb|EDR37726.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165988859|gb|EDR41160.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166204661|gb|EDR49141.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Antiqua str. B42003004]
gi|166961380|gb|EDR57401.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167048563|gb|EDR59971.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167055564|gb|EDR65357.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|169749229|gb|ACA66747.1| cold-shock DNA-binding domain protein [Yersinia
pseudotuberculosis YPIII]
gi|229678306|gb|EEO74411.1| major cold shock protein Cspa1 [Yersinia pestis Nepal516]
gi|229687369|gb|EEO79444.1| major cold shock protein Cspa1 [Yersinia pestis biovar Orientalis
str. India 195]
gi|229695679|gb|EEO85726.1| major cold shock protein Cspa1 [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229705730|gb|EEO91739.1| major cold shock protein Cspa1 [Yersinia pestis Pestoides A]
gi|270337131|gb|EFA47908.1| transcriptional repressor activity CueR [Yersinia pestis KIM D27]
gi|320017193|gb|ADW00765.1| major cold shock protein Cspa1 [Yersinia pestis biovar Medievalis
str. Harbin 35]
gi|342853630|gb|AEL72183.1| major cold shock protein Cspa1 [Yersinia pestis A1122]
gi|391421757|gb|EIQ84417.1| cold shock-like protein CspG [Yersinia pestis PY-01]
gi|391421940|gb|EIQ84579.1| cold shock-like protein CspG [Yersinia pestis PY-02]
gi|391422076|gb|EIQ84695.1| cold shock-like protein CspG [Yersinia pestis PY-03]
gi|391436852|gb|EIQ97771.1| cold shock-like protein CspG [Yersinia pestis PY-04]
gi|391438005|gb|EIQ98806.1| cold shock-like protein CspG [Yersinia pestis PY-05]
gi|391441718|gb|EIR02185.1| cold shock-like protein CspG [Yersinia pestis PY-06]
gi|391453887|gb|EIR13150.1| cold shock-like protein CspG [Yersinia pestis PY-07]
gi|391454204|gb|EIR13437.1| cold shock-like protein CspG [Yersinia pestis PY-08]
gi|391456279|gb|EIR15321.1| cold shock-like protein CspG [Yersinia pestis PY-09]
gi|391469826|gb|EIR27561.1| cold shock-like protein CspG [Yersinia pestis PY-10]
gi|391470528|gb|EIR28187.1| cold shock-like protein CspG [Yersinia pestis PY-11]
gi|391472006|gb|EIR29511.1| cold shock-like protein CspG [Yersinia pestis PY-12]
gi|391485509|gb|EIR41642.1| cold shock-like protein CspG [Yersinia pestis PY-13]
gi|391487163|gb|EIR43126.1| cold shock-like protein CspG [Yersinia pestis PY-15]
gi|391487183|gb|EIR43144.1| 'Cold-shock' DNA-binding domain protein [Yersinia pestis PY-14]
gi|391506693|gb|EIR60591.1| cold shock-like protein CspG [Yersinia pestis PY-25]
gi|391511356|gb|EIR64779.1| cold shock-like protein CspG [Yersinia pestis PY-16]
gi|391512605|gb|EIR65906.1| cold shock-like protein CspG [Yersinia pestis PY-19]
gi|391517639|gb|EIR70421.1| cold shock-like protein CspG [Yersinia pestis PY-29]
gi|391518836|gb|EIR71522.1| cold shock-like protein CspG [Yersinia pestis PY-34]
gi|391519688|gb|EIR72307.1| cold shock-like protein CspG [Yersinia pestis PY-32]
gi|391532142|gb|EIR83568.1| cold shock-like protein CspG [Yersinia pestis PY-36]
gi|391534982|gb|EIR86103.1| cold shock-like protein CspG [Yersinia pestis PY-42]
gi|391537451|gb|EIR88347.1| 'Cold-shock' DNA-binding domain protein [Yersinia pestis PY-45]
gi|391550550|gb|EIS00155.1| cold shock-like protein CspG [Yersinia pestis PY-46]
gi|391550754|gb|EIS00335.1| cold shock-like protein CspG [Yersinia pestis PY-47]
gi|391551044|gb|EIS00594.1| cold shock-like protein CspG [Yersinia pestis PY-48]
gi|391566641|gb|EIS14609.1| cold shock-like protein CspG [Yersinia pestis PY-53]
gi|391570474|gb|EIS17933.1| 'Cold-shock' DNA-binding domain protein [Yersinia pestis PY-54]
gi|391575195|gb|EIS21955.1| cold shock-like protein CspG [Yersinia pestis PY-52]
gi|391580120|gb|EIS26151.1| cold shock-like protein CspG [Yersinia pestis PY-55]
gi|391581835|gb|EIS27677.1| cold shock-like protein CspG [Yersinia pestis PY-56]
gi|391592301|gb|EIS36739.1| cold shock-like protein CspG [Yersinia pestis PY-58]
gi|391595715|gb|EIS39727.1| cold shock-like protein CspG [Yersinia pestis PY-60]
gi|391596525|gb|EIS40452.1| cold shock-like protein CspG [Yersinia pestis PY-59]
gi|391610263|gb|EIS52569.1| cold shock-like protein CspG [Yersinia pestis PY-61]
gi|391610577|gb|EIS52840.1| cold shock-like protein CspG [Yersinia pestis PY-63]
gi|391612304|gb|EIS54389.1| cold shock-like protein CspG [Yersinia pestis PY-64]
gi|391623545|gb|EIS64315.1| cold shock-like protein CspG [Yersinia pestis PY-65]
gi|391627008|gb|EIS67270.1| cold shock-like protein CspG [Yersinia pestis PY-66]
gi|391633843|gb|EIS73190.1| cold shock-like protein CspG [Yersinia pestis PY-71]
gi|391644360|gb|EIS82373.1| cold shock-like protein CspG [Yersinia pestis PY-72]
gi|391645951|gb|EIS83762.1| cold shock-like protein CspG [Yersinia pestis PY-76]
gi|391653583|gb|EIS90520.1| cold shock-like protein CspG [Yersinia pestis PY-89]
gi|391659022|gb|EIS95370.1| 'Cold-shock' DNA-binding domain protein [Yersinia pestis PY-90]
gi|391661383|gb|EIS97432.1| cold shock-like protein CspG [Yersinia pestis PY-88]
gi|391666561|gb|EIT02008.1| cold shock-like protein CspG [Yersinia pestis PY-91]
gi|391675885|gb|EIT10358.1| cold shock-like protein CspG [Yersinia pestis PY-93]
gi|391676229|gb|EIT10658.1| cold shock-like protein CspG [Yersinia pestis PY-92]
gi|391676601|gb|EIT10990.1| 'Cold-shock' DNA-binding domain protein [Yersinia pestis PY-94]
gi|391690095|gb|EIT23161.1| cold shock-like protein CspG [Yersinia pestis PY-95]
gi|391692355|gb|EIT25207.1| cold shock-like protein CspG [Yersinia pestis PY-96]
gi|391693899|gb|EIT26606.1| cold shock-like protein CspG [Yersinia pestis PY-98]
gi|391707369|gb|EIT38726.1| cold shock-like protein CspG [Yersinia pestis PY-99]
gi|391719348|gb|EIT49468.1| cold shock-like protein CspG [Yersinia pestis PY-100]
gi|391719658|gb|EIT49739.1| cold shock-like protein CspG [Yersinia pestis PY-101]
gi|391723494|gb|EIT53168.1| cold shock-like protein CspG [Yersinia pestis PY-103]
gi|391726613|gb|EIT55936.1| cold shock-like protein CspG [Yersinia pestis PY-113]
gi|391730483|gb|EIT59310.1| cold shock-like protein CspG [Yersinia pestis PY-102]
gi|411174064|gb|EKS44101.1| major cold shock protein Cspa1 [Yersinia pestis INS]
Length = 70
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 44/67 (65%), Gaps = 4/67 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+ G+VK++D+ +GFGFIT D +D+FVH S+I + F++L G+ V+F+I G K
Sbjct: 5 MTGLVKWFDAGKGFGFITPADGSKDVFVHFSAIQSND----FKTLDEGQNVEFSIENGAK 60
Query: 69 DIEAINV 75
A+NV
Sbjct: 61 GPSAVNV 67
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 44/67 (65%), Gaps = 4/67 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+ G+VK++D+ +GFGFIT D +D+FVH S+I + F++L G+ V+F+I G K
Sbjct: 5 MTGLVKWFDAGKGFGFITPADGSKDVFVHFSAIQSND----FKTLDEGQNVEFSIENGAK 60
Query: 170 DIEAINV 176
A+NV
Sbjct: 61 GPSAVNV 67
>gi|359399246|ref|ZP_09192251.1| cold shock protein (beta-ribbon, CspA family) [Novosphingobium
pentaromativorans US6-1]
gi|357599452|gb|EHJ61165.1| cold shock protein (beta-ribbon, CspA family) [Novosphingobium
pentaromativorans US6-1]
Length = 131
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 76/156 (48%), Gaps = 28/156 (17%)
Query: 34 IFVHKSSIVKMNPKKFFQSLGLGEIVDFNI--GVGKKDIEAINVTGPNGIPVQGAPKSSS 91
+FVH SS+ + + L G+ ++F + GK + V G + IPVQ +
Sbjct: 1 MFVHISSVERAG----LEGLAEGQQLEFQLVDRGGKVSATDLVVVG-DVIPVQKREAAPQ 55
Query: 92 ETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFF 151
++G G VKF++S +GFGFITR D + D FVH S++ +
Sbjct: 56 RQLTG-----------EKATGTVKFFNSMKGFGFITRDDGQPDAFVHISAV----ERSGL 100
Query: 152 QSLGLGEIVDFNIGVGKK-DIEAINVTGPNGIPVQG 186
+L G+ V+F+I V ++ A+N++ P+QG
Sbjct: 101 SALNEGDRVEFDIEVDRRGKYSAVNLS-----PLQG 131
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 10/76 (13%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK-D 69
G VKF++S +GFGFITR D + D FVH S++ + +L G+ V+F+I V ++
Sbjct: 65 GTVKFFNSMKGFGFITRDDGQPDAFVHISAV----ERSGLSALNEGDRVEFDIEVDRRGK 120
Query: 70 IEAINVTGPNGIPVQG 85
A+N++ P+QG
Sbjct: 121 YSAVNLS-----PLQG 131
>gi|400405353|ref|YP_006588212.1| cold shock protein [secondary endosymbiont of Ctenarytaina
eucalypti]
gi|400363716|gb|AFP84784.1| cold shock protein [secondary endosymbiont of Ctenarytaina
eucalypti]
Length = 69
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 4/68 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
++G VK+++ +GFGFIT D +D+FVH S+I F++L G+ V+F I G+K
Sbjct: 4 IKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNG----FKTLTEGQSVEFEIQDGQK 59
Query: 69 DIEAINVT 76
A+NVT
Sbjct: 60 GPSAVNVT 67
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 4/68 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
++G VK+++ +GFGFIT D +D+FVH S+I F++L G+ V+F I G+K
Sbjct: 4 IKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNG----FKTLTEGQSVEFEIQDGQK 59
Query: 170 DIEAINVT 177
A+NVT
Sbjct: 60 GPSAVNVT 67
>gi|254464203|ref|ZP_05077614.1| cold-shock DNA-binding domain protein [Rhodobacterales bacterium
Y4I]
gi|206685111|gb|EDZ45593.1| cold-shock DNA-binding domain protein [Rhodobacterales bacterium
Y4I]
Length = 179
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 78/173 (45%), Gaps = 16/173 (9%)
Query: 6 IHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGV 65
+ V+G+VK++D +G+GF+ + DI +H + + + EIV G
Sbjct: 8 LQQVQGLVKWFDPAKGYGFVVSDEGGPDILLHVNVLRNFGQSSVADGARI-EIVTHQTGR 66
Query: 66 GKKDIEAINVTGP--NGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGF 123
G + +E +++ P + PV +E + +++ PA VK++D +GF
Sbjct: 67 GVQAVEVLSIMPPERDDTPVL---SDFAELDMDSLQSEPLEPAR------VKWFDKGKGF 117
Query: 124 GFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINV 176
GF ED+F+H V++ + L GE + + GK+ A+ V
Sbjct: 118 GFANVFGRGEDVFLH----VEVLRQSGLADLQPGEALAMRVIDGKRGRMAVEV 166
Score = 35.8 bits (81), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 104 FPAVHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFN 163
++ V+G+VK++D +G+GF+ + DI +H + + + EIV
Sbjct: 5 LSSLQQVQGLVKWFDPAKGYGFVVSDEGGPDILLHVNVLRNFGQSSVADGARI-EIVTHQ 63
Query: 164 IGVGKKDIEAINVTGPN 180
G G + +E +++ P
Sbjct: 64 TGRGVQAVEVLSIMPPE 80
>gi|359409519|ref|ZP_09201987.1| cold shock protein [SAR116 cluster alpha proteobacterium HIMB100]
gi|356676272|gb|EHI48625.1| cold shock protein [SAR116 cluster alpha proteobacterium HIMB100]
Length = 157
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 63/134 (47%), Gaps = 21/134 (15%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFN-IGVGKK 68
+G V +Y+ ++G+GF+ E+IF+H S++ + + L + N G
Sbjct: 8 QGQVVWYNERKGYGFVKV--GGEEIFIHHSALDQFGLSAIYPGDMLTVCISENDCGAVIH 65
Query: 69 DIEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFITR 128
DI AI P +PV + + V+G+VKF+++ +G+GF+
Sbjct: 66 DILAIERVKPKSVPVDAELRENE------------------VKGVVKFFNTYKGYGFVDI 107
Query: 129 LDNKEDIFVHKSSI 142
+K D+FVH ++
Sbjct: 108 GADKRDVFVHLRTL 121
>gi|384228318|ref|YP_005620053.1| cold shock-like protein CspC [Buchnera aphidicola str. Ua
(Uroleucon ambrosiae)]
gi|345539251|gb|AEO08118.1| cold shock-like protein CspC [Buchnera aphidicola str. Ua
(Uroleucon ambrosiae)]
Length = 69
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 43/67 (64%), Gaps = 4/67 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
++G VK+++ +GFGFIT LD +D+FVH SSI F++L G+ V+F + G+K
Sbjct: 4 IKGQVKWFNESKGFGFITPLDGSKDVFVHFSSIQGNG----FKTLTEGQNVEFEVQDGQK 59
Query: 69 DIEAINV 75
AINV
Sbjct: 60 GPAAINV 66
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 43/67 (64%), Gaps = 4/67 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
++G VK+++ +GFGFIT LD +D+FVH SSI F++L G+ V+F + G+K
Sbjct: 4 IKGQVKWFNESKGFGFITPLDGSKDVFVHFSSIQGNG----FKTLTEGQNVEFEVQDGQK 59
Query: 170 DIEAINV 176
AINV
Sbjct: 60 GPAAINV 66
>gi|157364579|ref|YP_001471346.1| cold-shock DNA-binding domain-containing protein [Thermotoga
lettingae TMO]
gi|157315183|gb|ABV34282.1| putative cold-shock DNA-binding domain protein [Thermotoga
lettingae TMO]
Length = 67
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 45/67 (67%), Gaps = 5/67 (7%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 69
+G VK++DSK+G+GFIT+ + ED+FVH S+I F++L G+ V+F + G K
Sbjct: 3 KGTVKWFDSKKGYGFITK-EGGEDVFVHFSAI----KTDGFKTLREGQEVEFEVQQGNKG 57
Query: 70 IEAINVT 76
+A+NVT
Sbjct: 58 PQAVNVT 64
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 45/67 (67%), Gaps = 5/67 (7%)
Query: 111 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 170
+G VK++DSK+G+GFIT+ + ED+FVH S+I F++L G+ V+F + G K
Sbjct: 3 KGTVKWFDSKKGYGFITK-EGGEDVFVHFSAI----KTDGFKTLREGQEVEFEVQQGNKG 57
Query: 171 IEAINVT 177
+A+NVT
Sbjct: 58 PQAVNVT 64
>gi|427427085|ref|ZP_18917130.1| Cold shock protein CspC [Caenispirillum salinarum AK4]
gi|425883786|gb|EKV32461.1| Cold shock protein CspC [Caenispirillum salinarum AK4]
Length = 144
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 61/127 (48%), Gaps = 23/127 (18%)
Query: 13 VKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEA 72
+K++++ +GFGF+ D D F+H S + + + L D+E
Sbjct: 1 MKWFNATKGFGFVAFSDGAPDAFLHISVVERAGMRDVLPGTTL-----------VCDVE- 48
Query: 73 INVTGPNGIPVQG--APKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFITRLD 130
+GP G V G + +SS TV ++ P TV G+VKF+ + +GFGF+T
Sbjct: 49 ---SGPKGPQVSGIDSIDASSATV------EAAIPVNETVEGVVKFFSADKGFGFVTPDA 99
Query: 131 NKEDIFV 137
+D+F+
Sbjct: 100 GGKDVFI 106
>gi|326523669|dbj|BAJ93005.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 231
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 5/83 (6%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V+G VK+++ +GFGFI+ D ED+FVH+S+I ++SL ++V+F++ G
Sbjct: 5 VKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDG----YRSLNENDVVEFDVITGDD 60
Query: 69 D-IEAINVTGPNGIPVQGAPKSS 90
+A +VT P G + G + S
Sbjct: 61 GRTKASDVTAPGGGALSGGSRPS 83
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 5/81 (6%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V+G VK+++ +GFGFI+ D ED+FVH+S+I ++SL ++V+F++ G
Sbjct: 5 VKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDG----YRSLNENDVVEFDVITGDD 60
Query: 170 D-IEAINVTGPNGIPVQGAPK 189
+A +VT P G + G +
Sbjct: 61 GRTKASDVTAPGGGALSGGSR 81
>gi|325261145|ref|ZP_08127883.1| conserved domain protein [Clostridium sp. D5]
gi|324032599|gb|EGB93876.1| conserved domain protein [Clostridium sp. D5]
Length = 67
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 69
G VK++++++GFGFIT N ED+FVH S I ++SL G+ V F+I G +
Sbjct: 3 NGTVKWFNAQKGFGFITNDANGEDVFVHFSGI----ASDGYKSLEEGQKVSFDITEGNRG 58
Query: 70 IEAINVTGP 78
+A+NV G
Sbjct: 59 PQAVNVVGA 67
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 111 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 170
G VK++++++GFGFIT N ED+FVH S I ++SL G+ V F+I G +
Sbjct: 3 NGTVKWFNAQKGFGFITNDANGEDVFVHFSGI----ASDGYKSLEEGQKVSFDITEGNRG 58
Query: 171 IEAINVTGP 179
+A+NV G
Sbjct: 59 PQAVNVVGA 67
>gi|222099844|ref|YP_002534412.1| Cold shock-like protein [Thermotoga neapolitana DSM 4359]
gi|221572234|gb|ACM23046.1| Cold shock-like protein [Thermotoga neapolitana DSM 4359]
Length = 66
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 46/67 (68%), Gaps = 5/67 (7%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+RG VK++D+K+G+GFIT+ D D+FVH S+I + F++L G++V+F + GKK
Sbjct: 1 MRGKVKWFDAKKGYGFITK-DEGGDVFVHWSAI----EMEGFKTLKEGQVVEFEVQEGKK 55
Query: 69 DIEAINV 75
+A +V
Sbjct: 56 GPQAAHV 62
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 46/67 (68%), Gaps = 5/67 (7%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+RG VK++D+K+G+GFIT+ D D+FVH S+I + F++L G++V+F + GKK
Sbjct: 1 MRGKVKWFDAKKGYGFITK-DEGGDVFVHWSAI----EMEGFKTLKEGQVVEFEVQEGKK 55
Query: 170 DIEAINV 176
+A +V
Sbjct: 56 GPQAAHV 62
>gi|293345051|ref|XP_002725926.1| PREDICTED: protein lin-28 homolog B isoform 2 [Rattus norvegicus]
gi|293356926|ref|XP_002729027.1| PREDICTED: protein lin-28 homolog B isoform 3 [Rattus norvegicus]
Length = 247
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 11/87 (12%)
Query: 112 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 164
G K+++ + GFGFI+ LD D+FVH+S + F+SL GE V+F
Sbjct: 30 GHCKWFNVRMGFGFISMISREGNPLDIPVDVFVHQSKLFMEG----FRSLKEGEPVEFTF 85
Query: 165 GVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP G P G+ + P
Sbjct: 86 KKSPKGLESIRVTGPGGNPCLGSERRP 112
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 49/95 (51%), Gaps = 13/95 (13%)
Query: 1 MTKFEIHTVRGI--VKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQ 51
+ + E +RG K+++ + GFGFI+ LD D+FVH+S + F+
Sbjct: 18 LAEDESQVLRGTGHCKWFNVRMGFGFISMISREGNPLDIPVDVFVHQSKLFMEG----FR 73
Query: 52 SLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGA 86
SL GE V+F K +E+I VTGP G P G+
Sbjct: 74 SLKEGEPVEFTFKKSPKGLESIRVTGPGGNPCLGS 108
>gi|410086680|ref|ZP_11283388.1| Cold shock protein CspC [Morganella morganii SC01]
gi|455739674|ref|YP_007505940.1| Cold shock protein CspC [Morganella morganii subsp. morganii KT]
gi|409766900|gb|EKN50988.1| Cold shock protein CspC [Morganella morganii SC01]
gi|455421237|gb|AGG31567.1| Cold shock protein CspC [Morganella morganii subsp. morganii KT]
Length = 69
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
++G VK+++ +GFGFIT D +D+FVH S+I+ F++L G+ V+F + G K
Sbjct: 4 LKGTVKWFNESKGFGFITPADGSKDVFVHFSAIMTDG----FKTLAEGQQVEFEVQDGPK 59
Query: 69 DIEAINVT 76
A NVT
Sbjct: 60 GPAAANVT 67
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
++G VK+++ +GFGFIT D +D+FVH S+I+ F++L G+ V+F + G K
Sbjct: 4 LKGTVKWFNESKGFGFITPADGSKDVFVHFSAIMTDG----FKTLAEGQQVEFEVQDGPK 59
Query: 170 DIEAINVT 177
A NVT
Sbjct: 60 GPAAANVT 67
>gi|421497469|ref|ZP_15944637.1| cspA [Aeromonas media WS]
gi|407183534|gb|EKE57423.1| cspA [Aeromonas media WS]
Length = 66
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 44/69 (63%), Gaps = 4/69 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+ G VKF+++++GFGFI+ D +D+FVH S+I + F++L G+ V+F I G+K
Sbjct: 1 MTGTVKFFNAEKGFGFISPADGGKDVFVHFSAIQSTS----FKTLDEGQRVEFTIEQGQK 56
Query: 69 DIEAINVTG 77
A NV G
Sbjct: 57 GPAAANVVG 65
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 44/69 (63%), Gaps = 4/69 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+ G VKF+++++GFGFI+ D +D+FVH S+I + F++L G+ V+F I G+K
Sbjct: 1 MTGTVKFFNAEKGFGFISPADGGKDVFVHFSAIQSTS----FKTLDEGQRVEFTIEQGQK 56
Query: 170 DIEAINVTG 178
A NV G
Sbjct: 57 GPAAANVVG 65
>gi|289549228|ref|YP_003474216.1| cold-shock DNA-binding domain-containing protein [Thermocrinis
albus DSM 14484]
gi|289182845|gb|ADC90089.1| cold-shock DNA-binding domain protein [Thermocrinis albus DSM
14484]
Length = 69
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 43/67 (64%), Gaps = 4/67 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
VRG VK++ ++G+GFITR DN+ D+FVH S+I ++ F++L G+ V+F I K
Sbjct: 3 VRGTVKWFSKEKGYGFITRDDNQGDVFVHFSAI----QQRGFKTLEQGQKVEFEIEEDSK 58
Query: 69 DIEAINV 75
A NV
Sbjct: 59 GPRAKNV 65
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 43/67 (64%), Gaps = 4/67 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
VRG VK++ ++G+GFITR DN+ D+FVH S+I ++ F++L G+ V+F I K
Sbjct: 3 VRGTVKWFSKEKGYGFITRDDNQGDVFVHFSAI----QQRGFKTLEQGQKVEFEIEEDSK 58
Query: 170 DIEAINV 176
A NV
Sbjct: 59 GPRAKNV 65
>gi|255531845|ref|YP_003092217.1| DNA-binding cold-shock protein [Pedobacter heparinus DSM 2366]
gi|255344829|gb|ACU04155.1| Cold-shock protein DNA-binding [Pedobacter heparinus DSM 2366]
Length = 68
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 42/66 (63%), Gaps = 4/66 (6%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 70
G VK+++S +GFGFIT D +DIFVH S+I + F+ L G+ V+F + GKK
Sbjct: 5 GKVKWFNSAKGFGFITPEDGGKDIFVHFSAIAGDS----FRELNEGDSVEFELNDGKKGP 60
Query: 71 EAINVT 76
EA NVT
Sbjct: 61 EAQNVT 66
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 42/66 (63%), Gaps = 4/66 (6%)
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 171
G VK+++S +GFGFIT D +DIFVH S+I + F+ L G+ V+F + GKK
Sbjct: 5 GKVKWFNSAKGFGFITPEDGGKDIFVHFSAIAGDS----FRELNEGDSVEFELNDGKKGP 60
Query: 172 EAINVT 177
EA NVT
Sbjct: 61 EAQNVT 66
>gi|108809647|ref|YP_653563.1| major cold shock protein Cspa2 [Yersinia pestis Antiqua]
gi|108813687|ref|YP_649454.1| major cold shock protein Cspa2 [Yersinia pestis Nepal516]
gi|145597566|ref|YP_001161642.1| major cold shock protein Cspa2 [Yersinia pestis Pestoides F]
gi|153948953|ref|YP_001399367.1| cold shock DNA-binding domain-containing protein [Yersinia
pseudotuberculosis IP 31758]
gi|153997419|ref|ZP_02022519.1| major cold shock protein Cspa2 [Yersinia pestis CA88-4125]
gi|162421711|ref|YP_001605762.1| cold shock DNA-binding domain-containing protein [Yersinia pestis
Angola]
gi|165927588|ref|ZP_02223420.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165937409|ref|ZP_02225972.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Orientalis str. IP275]
gi|166012234|ref|ZP_02233132.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166214132|ref|ZP_02240167.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Antiqua str. B42003004]
gi|167401979|ref|ZP_02307462.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167420637|ref|ZP_02312390.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167425433|ref|ZP_02317186.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|218930653|ref|YP_002348528.1| cold-shock protein CspA [Yersinia pestis CO92]
gi|229836786|ref|ZP_04456951.1| major cold shock protein Cspa2 [Yersinia pestis Pestoides A]
gi|229839314|ref|ZP_04459473.1| major cold shock protein Cspa2 [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229899878|ref|ZP_04515019.1| major cold shock protein Cspa2 [Yersinia pestis biovar Orientalis
str. India 195]
gi|229904189|ref|ZP_04519300.1| major cold shock protein Cspa2 [Yersinia pestis Nepal516]
gi|270488628|ref|ZP_06205702.1| transcriptional repressor activity CueR [Yersinia pestis KIM D27]
gi|384138500|ref|YP_005521202.1| cold shock-like protein [Yersinia pestis A1122]
gi|384416690|ref|YP_005626052.1| major cold shock protein Cspa2 [Yersinia pestis biovar Medievalis
str. Harbin 35]
gi|420548813|ref|ZP_15046584.1| cold shock-like protein CspG [Yersinia pestis PY-01]
gi|420554157|ref|ZP_15051350.1| cold shock-like protein CspG [Yersinia pestis PY-02]
gi|420559769|ref|ZP_15056225.1| cold shock-like protein CspG [Yersinia pestis PY-03]
gi|420565151|ref|ZP_15061063.1| cold shock-like protein CspG [Yersinia pestis PY-04]
gi|420575854|ref|ZP_15070764.1| cold shock-like protein CspG [Yersinia pestis PY-06]
gi|420581159|ref|ZP_15075590.1| cold shock-like protein CspG [Yersinia pestis PY-07]
gi|420586536|ref|ZP_15080454.1| cold shock-like protein CspG [Yersinia pestis PY-08]
gi|420591636|ref|ZP_15085044.1| cold shock-like protein CspG [Yersinia pestis PY-09]
gi|420597020|ref|ZP_15089884.1| cold shock-like protein CspG [Yersinia pestis PY-10]
gi|420602727|ref|ZP_15094952.1| cold shock-like protein CspG [Yersinia pestis PY-11]
gi|420608077|ref|ZP_15099809.1| cold shock-like protein CspG [Yersinia pestis PY-12]
gi|420613512|ref|ZP_15104676.1| cold shock-like protein CspG [Yersinia pestis PY-13]
gi|420618867|ref|ZP_15109344.1| 'Cold-shock' DNA-binding domain protein [Yersinia pestis PY-14]
gi|420624191|ref|ZP_15114141.1| cold shock-like protein CspG [Yersinia pestis PY-15]
gi|420625894|ref|ZP_15115696.1| cold shock-like protein CspG [Yersinia pestis PY-16]
gi|420631080|ref|ZP_15120389.1| cold shock-like protein CspG [Yersinia pestis PY-19]
gi|420639593|ref|ZP_15128020.1| cold shock-like protein CspG [Yersinia pestis PY-25]
gi|420645046|ref|ZP_15133007.1| cold shock-like protein CspG [Yersinia pestis PY-29]
gi|420650353|ref|ZP_15137788.1| cold shock-like protein CspG [Yersinia pestis PY-32]
gi|420655988|ref|ZP_15142860.1| cold shock-like protein CspG [Yersinia pestis PY-34]
gi|420661424|ref|ZP_15147712.1| cold shock-like protein CspG [Yersinia pestis PY-36]
gi|420666781|ref|ZP_15152543.1| cold shock-like protein CspG [Yersinia pestis PY-42]
gi|420671631|ref|ZP_15156966.1| 'Cold-shock' DNA-binding domain protein [Yersinia pestis PY-45]
gi|420676972|ref|ZP_15161824.1| cold shock-like protein CspG [Yersinia pestis PY-46]
gi|420682537|ref|ZP_15166843.1| cold shock-like protein CspG [Yersinia pestis PY-47]
gi|420687942|ref|ZP_15171651.1| cold shock-like protein CspG [Yersinia pestis PY-48]
gi|420689630|ref|ZP_15173147.1| cold shock-like protein CspG [Yersinia pestis PY-52]
gi|420698936|ref|ZP_15181307.1| cold shock-like protein CspG [Yersinia pestis PY-53]
gi|420704805|ref|ZP_15185951.1| 'Cold-shock' DNA-binding domain protein [Yersinia pestis PY-54]
gi|420710116|ref|ZP_15190704.1| cold shock-like protein CspG [Yersinia pestis PY-55]
gi|420715600|ref|ZP_15195563.1| cold shock-like protein CspG [Yersinia pestis PY-56]
gi|420721121|ref|ZP_15200289.1| cold shock-like protein CspG [Yersinia pestis PY-58]
gi|420726575|ref|ZP_15205101.1| cold shock-like protein CspG [Yersinia pestis PY-59]
gi|420732096|ref|ZP_15210066.1| cold shock-like protein CspG [Yersinia pestis PY-60]
gi|420737067|ref|ZP_15214558.1| cold shock-like protein CspG [Yersinia pestis PY-61]
gi|420742546|ref|ZP_15219482.1| cold shock-like protein CspG [Yersinia pestis PY-63]
gi|420748421|ref|ZP_15224423.1| cold shock-like protein CspG [Yersinia pestis PY-64]
gi|420753694|ref|ZP_15229159.1| cold shock-like protein CspG [Yersinia pestis PY-65]
gi|420759644|ref|ZP_15233927.1| cold shock-like protein CspG [Yersinia pestis PY-66]
gi|420766803|ref|ZP_15240304.1| cold shock-like protein CspG [Yersinia pestis PY-72]
gi|420775062|ref|ZP_15247738.1| cold shock-like protein CspG [Yersinia pestis PY-76]
gi|420776886|ref|ZP_15249357.1| cold shock-like protein CspG [Yersinia pestis PY-88]
gi|420786291|ref|ZP_15257578.1| cold shock-like protein CspG [Yersinia pestis PY-89]
gi|420791342|ref|ZP_15262119.1| 'Cold-shock' DNA-binding domain protein [Yersinia pestis PY-90]
gi|420796911|ref|ZP_15267132.1| cold shock-like protein CspG [Yersinia pestis PY-91]
gi|420802008|ref|ZP_15271707.1| cold shock-like protein CspG [Yersinia pestis PY-92]
gi|420807349|ref|ZP_15276553.1| cold shock-like protein CspG [Yersinia pestis PY-93]
gi|420812750|ref|ZP_15281392.1| 'Cold-shock' DNA-binding domain protein [Yersinia pestis PY-94]
gi|420818229|ref|ZP_15286359.1| cold shock-like protein CspG [Yersinia pestis PY-95]
gi|420823558|ref|ZP_15291123.1| cold shock-like protein CspG [Yersinia pestis PY-96]
gi|420828623|ref|ZP_15295686.1| cold shock-like protein CspG [Yersinia pestis PY-98]
gi|420834225|ref|ZP_15300743.1| cold shock-like protein CspG [Yersinia pestis PY-99]
gi|420835860|ref|ZP_15302224.1| cold shock-like protein CspG [Yersinia pestis PY-100]
gi|420841007|ref|ZP_15306885.1| cold shock-like protein CspG [Yersinia pestis PY-101]
gi|420846625|ref|ZP_15311962.1| cold shock-like protein CspG [Yersinia pestis PY-102]
gi|420855719|ref|ZP_15319814.1| cold shock-like protein CspG [Yersinia pestis PY-103]
gi|420860817|ref|ZP_15324310.1| cold shock-like protein CspG [Yersinia pestis PY-113]
gi|421765157|ref|ZP_16201944.1| cold shock-like protein [Yersinia pestis INS]
gi|2275140|emb|CAB10779.1| hypothetical protein [Yersinia pestis]
gi|108777335|gb|ABG19854.1| cold-shock DNA-binding protein family [Yersinia pestis Nepal516]
gi|108781560|gb|ABG15618.1| cold-shock DNA-binding protein family [Yersinia pestis Antiqua]
gi|115349264|emb|CAL22231.1| major cold shock protein Cspa2 [Yersinia pestis CO92]
gi|145209262|gb|ABP38669.1| cold-shock DNA-binding protein family [Yersinia pestis Pestoides
F]
gi|149289056|gb|EDM39136.1| major cold shock protein Cspa2 [Yersinia pestis CA88-4125]
gi|152960448|gb|ABS47909.1| 'Cold-shock' DNA-binding domain [Yersinia pseudotuberculosis IP
31758]
gi|162354526|gb|ABX88474.1| cold shock DNA-binding domain protein [Yersinia pestis Angola]
gi|165914514|gb|EDR33128.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Orientalis str. IP275]
gi|165920482|gb|EDR37759.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165988853|gb|EDR41154.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166204619|gb|EDR49099.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Antiqua str. B42003004]
gi|166961443|gb|EDR57464.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167048565|gb|EDR59973.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167055447|gb|EDR65240.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|229678307|gb|EEO74412.1| major cold shock protein Cspa2 [Yersinia pestis Nepal516]
gi|229687370|gb|EEO79445.1| major cold shock protein Cspa2 [Yersinia pestis biovar Orientalis
str. India 195]
gi|229695680|gb|EEO85727.1| major cold shock protein Cspa2 [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229705729|gb|EEO91738.1| major cold shock protein Cspa2 [Yersinia pestis Pestoides A]
gi|270337132|gb|EFA47909.1| transcriptional repressor activity CueR [Yersinia pestis KIM D27]
gi|320017194|gb|ADW00766.1| major cold shock protein Cspa2 [Yersinia pestis biovar Medievalis
str. Harbin 35]
gi|342853629|gb|AEL72182.1| cold shock-like protein [Yersinia pestis A1122]
gi|391421766|gb|EIQ84426.1| cold shock-like protein CspG [Yersinia pestis PY-01]
gi|391421939|gb|EIQ84578.1| cold shock-like protein CspG [Yersinia pestis PY-02]
gi|391422075|gb|EIQ84694.1| cold shock-like protein CspG [Yersinia pestis PY-03]
gi|391436851|gb|EIQ97770.1| cold shock-like protein CspG [Yersinia pestis PY-04]
gi|391441711|gb|EIR02178.1| cold shock-like protein CspG [Yersinia pestis PY-06]
gi|391453884|gb|EIR13147.1| cold shock-like protein CspG [Yersinia pestis PY-07]
gi|391454203|gb|EIR13436.1| cold shock-like protein CspG [Yersinia pestis PY-08]
gi|391456278|gb|EIR15320.1| cold shock-like protein CspG [Yersinia pestis PY-09]
gi|391469830|gb|EIR27565.1| cold shock-like protein CspG [Yersinia pestis PY-10]
gi|391470538|gb|EIR28197.1| cold shock-like protein CspG [Yersinia pestis PY-11]
gi|391472005|gb|EIR29510.1| cold shock-like protein CspG [Yersinia pestis PY-12]
gi|391485517|gb|EIR41650.1| cold shock-like protein CspG [Yersinia pestis PY-13]
gi|391487177|gb|EIR43140.1| cold shock-like protein CspG [Yersinia pestis PY-15]
gi|391487182|gb|EIR43143.1| 'Cold-shock' DNA-binding domain protein [Yersinia pestis PY-14]
gi|391506692|gb|EIR60590.1| cold shock-like protein CspG [Yersinia pestis PY-25]
gi|391511352|gb|EIR64775.1| cold shock-like protein CspG [Yersinia pestis PY-16]
gi|391512606|gb|EIR65907.1| cold shock-like protein CspG [Yersinia pestis PY-19]
gi|391517641|gb|EIR70423.1| cold shock-like protein CspG [Yersinia pestis PY-29]
gi|391518832|gb|EIR71518.1| cold shock-like protein CspG [Yersinia pestis PY-34]
gi|391519687|gb|EIR72306.1| cold shock-like protein CspG [Yersinia pestis PY-32]
gi|391532141|gb|EIR83567.1| cold shock-like protein CspG [Yersinia pestis PY-36]
gi|391534983|gb|EIR86104.1| cold shock-like protein CspG [Yersinia pestis PY-42]
gi|391537444|gb|EIR88340.1| 'Cold-shock' DNA-binding domain protein [Yersinia pestis PY-45]
gi|391550549|gb|EIS00154.1| cold shock-like protein CspG [Yersinia pestis PY-46]
gi|391550753|gb|EIS00334.1| cold shock-like protein CspG [Yersinia pestis PY-47]
gi|391551043|gb|EIS00593.1| cold shock-like protein CspG [Yersinia pestis PY-48]
gi|391566631|gb|EIS14599.1| cold shock-like protein CspG [Yersinia pestis PY-53]
gi|391570473|gb|EIS17932.1| 'Cold-shock' DNA-binding domain protein [Yersinia pestis PY-54]
gi|391575187|gb|EIS21947.1| cold shock-like protein CspG [Yersinia pestis PY-52]
gi|391580138|gb|EIS26169.1| cold shock-like protein CspG [Yersinia pestis PY-55]
gi|391581834|gb|EIS27676.1| cold shock-like protein CspG [Yersinia pestis PY-56]
gi|391592300|gb|EIS36738.1| cold shock-like protein CspG [Yersinia pestis PY-58]
gi|391595710|gb|EIS39722.1| cold shock-like protein CspG [Yersinia pestis PY-60]
gi|391596524|gb|EIS40451.1| cold shock-like protein CspG [Yersinia pestis PY-59]
gi|391610262|gb|EIS52568.1| cold shock-like protein CspG [Yersinia pestis PY-61]
gi|391610576|gb|EIS52839.1| cold shock-like protein CspG [Yersinia pestis PY-63]
gi|391612303|gb|EIS54388.1| cold shock-like protein CspG [Yersinia pestis PY-64]
gi|391623544|gb|EIS64314.1| cold shock-like protein CspG [Yersinia pestis PY-65]
gi|391627007|gb|EIS67269.1| cold shock-like protein CspG [Yersinia pestis PY-66]
gi|391644361|gb|EIS82374.1| cold shock-like protein CspG [Yersinia pestis PY-72]
gi|391645950|gb|EIS83761.1| cold shock-like protein CspG [Yersinia pestis PY-76]
gi|391653582|gb|EIS90519.1| cold shock-like protein CspG [Yersinia pestis PY-89]
gi|391659021|gb|EIS95369.1| 'Cold-shock' DNA-binding domain protein [Yersinia pestis PY-90]
gi|391661377|gb|EIS97426.1| cold shock-like protein CspG [Yersinia pestis PY-88]
gi|391666560|gb|EIT02007.1| cold shock-like protein CspG [Yersinia pestis PY-91]
gi|391675884|gb|EIT10357.1| cold shock-like protein CspG [Yersinia pestis PY-93]
gi|391676228|gb|EIT10657.1| cold shock-like protein CspG [Yersinia pestis PY-92]
gi|391676617|gb|EIT11006.1| 'Cold-shock' DNA-binding domain protein [Yersinia pestis PY-94]
gi|391690097|gb|EIT23163.1| cold shock-like protein CspG [Yersinia pestis PY-95]
gi|391692354|gb|EIT25206.1| cold shock-like protein CspG [Yersinia pestis PY-96]
gi|391693898|gb|EIT26605.1| cold shock-like protein CspG [Yersinia pestis PY-98]
gi|391707373|gb|EIT38730.1| cold shock-like protein CspG [Yersinia pestis PY-99]
gi|391719349|gb|EIT49469.1| cold shock-like protein CspG [Yersinia pestis PY-100]
gi|391719659|gb|EIT49740.1| cold shock-like protein CspG [Yersinia pestis PY-101]
gi|391723493|gb|EIT53167.1| cold shock-like protein CspG [Yersinia pestis PY-103]
gi|391726612|gb|EIT55935.1| cold shock-like protein CspG [Yersinia pestis PY-113]
gi|391730484|gb|EIT59311.1| cold shock-like protein CspG [Yersinia pestis PY-102]
gi|411174063|gb|EKS44100.1| cold shock-like protein [Yersinia pestis INS]
Length = 70
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 44/67 (65%), Gaps = 4/67 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+ G+VK++D+ +GFGFIT D +D+FVH S+I + F++L G+ V+F+I G K
Sbjct: 5 MTGLVKWFDAGKGFGFITPADGSKDVFVHFSAIQSND----FKTLDEGQNVEFSIENGAK 60
Query: 69 DIEAINV 75
A+NV
Sbjct: 61 GPAAVNV 67
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 44/67 (65%), Gaps = 4/67 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+ G+VK++D+ +GFGFIT D +D+FVH S+I + F++L G+ V+F+I G K
Sbjct: 5 MTGLVKWFDAGKGFGFITPADGSKDVFVHFSAIQSND----FKTLDEGQNVEFSIENGAK 60
Query: 170 DIEAINV 176
A+NV
Sbjct: 61 GPAAVNV 67
>gi|160937355|ref|ZP_02084716.1| hypothetical protein CLOBOL_02246 [Clostridium bolteae ATCC
BAA-613]
gi|158439424|gb|EDP17174.1| hypothetical protein CLOBOL_02246 [Clostridium bolteae ATCC
BAA-613]
Length = 72
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 69
+G VK+++S++G+GFIT +N DIFVH S I F+SL G+ V F+I +
Sbjct: 8 KGTVKWFNSQKGYGFITNEENGMDIFVHFSGI----ASNGFKSLEEGQAVTFDITNSPRG 63
Query: 70 IEAINVTGP 78
++A+NV
Sbjct: 64 LQAVNVCAA 72
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 111 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 170
+G VK+++S++G+GFIT +N DIFVH S I F+SL G+ V F+I +
Sbjct: 8 KGTVKWFNSQKGYGFITNEENGMDIFVHFSGI----ASNGFKSLEEGQAVTFDITNSPRG 63
Query: 171 IEAINVTGP 179
++A+NV
Sbjct: 64 LQAVNVCAA 72
>gi|87119420|ref|ZP_01075317.1| Cold shock protein [Marinomonas sp. MED121]
gi|86164896|gb|EAQ66164.1| Cold shock protein [Marinomonas sp. MED121]
Length = 69
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 5/68 (7%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VKF++ +GFGFIT+ D D+FVH S+I F++L G+ V+F + GKK
Sbjct: 5 VTGTVKFFNETKGFGFITQ-DKGPDVFVHFSAINSSG----FKTLAEGQKVEFQVADGKK 59
Query: 69 DIEAINVT 76
EA NVT
Sbjct: 60 GPEAQNVT 67
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 5/68 (7%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VKF++ +GFGFIT+ D D+FVH S+I F++L G+ V+F + GKK
Sbjct: 5 VTGTVKFFNETKGFGFITQ-DKGPDVFVHFSAINSSG----FKTLAEGQKVEFQVADGKK 59
Query: 170 DIEAINVT 177
EA NVT
Sbjct: 60 GPEAQNVT 67
>gi|389691597|ref|ZP_10180391.1| cold shock protein [Microvirga sp. WSM3557]
gi|388588580|gb|EIM28870.1| cold shock protein [Microvirga sp. WSM3557]
Length = 206
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 79/181 (43%), Gaps = 29/181 (16%)
Query: 4 FEIHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
E+ V G +K++D +GFGFI + D+ +H + + + +Q+ G +
Sbjct: 36 LELVQVSGRIKWFDVAKGFGFIVPDNGMPDVLLHVTCLRRDG----YQAANEGARIVVEA 91
Query: 64 GVGKKDIEAINVTG--------PNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVK 115
+ ++A + P+ +P+ P++ + V PAV VK
Sbjct: 92 VQRPRGLQAFRILSLDESTALHPSELPL---PRTHVQVVP----TSGLEPAV------VK 138
Query: 116 FYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAIN 175
+++ RGFGF+T+ + K DIFVH ++ + L GE V G G K + A
Sbjct: 139 WFNRLRGFGFLTQGEGKPDIFVHMETLRRYG----IAELKPGERVFVRFGDGSKGLMAAE 194
Query: 176 V 176
V
Sbjct: 195 V 195
>gi|420764886|ref|ZP_15238569.1| cold shock-like protein CspG [Yersinia pestis PY-71]
gi|391633876|gb|EIS73223.1| cold shock-like protein CspG [Yersinia pestis PY-71]
Length = 66
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 44/67 (65%), Gaps = 4/67 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+ G+VK++D+ +GFGFIT D +D+FVH S+I + F++L G+ V+F+I G K
Sbjct: 1 MTGLVKWFDAGKGFGFITPADGSKDVFVHFSAIQSND----FKTLDEGQNVEFSIENGAK 56
Query: 69 DIEAINV 75
A+NV
Sbjct: 57 GPAAVNV 63
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 44/67 (65%), Gaps = 4/67 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+ G+VK++D+ +GFGFIT D +D+FVH S+I + F++L G+ V+F+I G K
Sbjct: 1 MTGLVKWFDAGKGFGFITPADGSKDVFVHFSAIQSND----FKTLDEGQNVEFSIENGAK 56
Query: 170 DIEAINV 176
A+NV
Sbjct: 57 GPAAVNV 63
>gi|22124143|ref|NP_667566.1| cold shock-like protein [Yersinia pestis KIM10+]
gi|108809648|ref|YP_653564.1| major cold shock protein Cspa1 [Yersinia pestis Antiqua]
gi|108813686|ref|YP_649453.1| major cold shock protein Cspa1 [Yersinia pestis Nepal516]
gi|21956898|gb|AAM83817.1|AE013622_6 cold shock-like protein [Yersinia pestis KIM10+]
gi|108777334|gb|ABG19853.1| cold-shock DNA-binding protein family [Yersinia pestis Nepal516]
gi|108781561|gb|ABG15619.1| cold-shock DNA-binding protein family [Yersinia pestis Antiqua]
Length = 102
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 44/67 (65%), Gaps = 4/67 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+ G+VK++D+ +GFGFIT D +D+FVH S+I + F++L G+ V+F+I G K
Sbjct: 37 MTGLVKWFDAGKGFGFITPADGSKDVFVHFSAIQSND----FKTLDEGQNVEFSIENGAK 92
Query: 69 DIEAINV 75
A+NV
Sbjct: 93 GPSAVNV 99
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 44/67 (65%), Gaps = 4/67 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+ G+VK++D+ +GFGFIT D +D+FVH S+I + F++L G+ V+F+I G K
Sbjct: 37 MTGLVKWFDAGKGFGFITPADGSKDVFVHFSAIQSND----FKTLDEGQNVEFSIENGAK 92
Query: 170 DIEAINV 176
A+NV
Sbjct: 93 GPSAVNV 99
>gi|411011796|ref|ZP_11388125.1| hypothetical protein AaquA_18950 [Aeromonas aquariorum AAK1]
gi|423198573|ref|ZP_17185156.1| cold shock-like protein CspE [Aeromonas hydrophila SSU]
gi|404630106|gb|EKB26814.1| cold shock-like protein CspE [Aeromonas hydrophila SSU]
Length = 69
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 43/67 (64%), Gaps = 4/67 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VKF++S++GFGFI+ +D +D+FVH S+I F++L G+ V+F I G+K
Sbjct: 4 VTGTVKFFNSEKGFGFISPVDGSKDVFVHFSAIQSNG----FKTLEEGQRVEFTIEQGQK 59
Query: 69 DIEAINV 75
A NV
Sbjct: 60 GPAAANV 66
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 43/67 (64%), Gaps = 4/67 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VKF++S++GFGFI+ +D +D+FVH S+I F++L G+ V+F I G+K
Sbjct: 4 VTGTVKFFNSEKGFGFISPVDGSKDVFVHFSAIQSNG----FKTLEEGQRVEFTIEQGQK 59
Query: 170 DIEAINV 176
A NV
Sbjct: 60 GPAAANV 66
>gi|329934360|ref|ZP_08284439.1| cold shock protein [Streptomyces griseoaurantiacus M045]
gi|329305956|gb|EGG49811.1| cold shock protein [Streptomyces griseoaurantiacus M045]
Length = 68
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
G VK+++S++GFGFI++ D D+F H S I ++ L GE V F+IG G+K
Sbjct: 2 ASGTVKWFNSEKGFGFISQNDGGPDVFAHYSEINGSG----YRELTEGEQVTFDIGQGQK 57
Query: 69 DIEAINVT 76
+A N+T
Sbjct: 58 GPQAQNIT 65
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
G VK+++S++GFGFI++ D D+F H S I ++ L GE V F+IG G+K
Sbjct: 2 ASGTVKWFNSEKGFGFISQNDGGPDVFAHYSEINGSG----YRELTEGEQVTFDIGQGQK 57
Query: 170 DIEAINVT 177
+A N+T
Sbjct: 58 GPQAQNIT 65
>gi|375263853|ref|YP_005026083.1| cold-shock DNA-binding domain-containing protein [Vibrio sp.
EJY3]
gi|369844280|gb|AEX25108.1| cold-shock DNA-binding domain-containing protein [Vibrio sp.
EJY3]
Length = 67
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 43/65 (66%), Gaps = 4/65 (6%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 70
GIVK+++ +GFGFIT D +D+FVH S I KM+ ++SL G+ V++ +G G+K
Sbjct: 4 GIVKWFNGDKGFGFITPDDGSKDLFVHHSEI-KMSG---YKSLADGQKVEYEVGQGQKGP 59
Query: 71 EAINV 75
A NV
Sbjct: 60 CATNV 64
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 43/65 (66%), Gaps = 4/65 (6%)
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 171
GIVK+++ +GFGFIT D +D+FVH S I KM+ ++SL G+ V++ +G G+K
Sbjct: 4 GIVKWFNGDKGFGFITPDDGSKDLFVHHSEI-KMSG---YKSLADGQKVEYEVGQGQKGP 59
Query: 172 EAINV 176
A NV
Sbjct: 60 CATNV 64
>gi|296225904|ref|XP_002758696.1| PREDICTED: protein lin-28 homolog A-like [Callithrix jacchus]
Length = 207
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 15/116 (12%)
Query: 83 VQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFIT-------RLDNKEDI 135
+ APK + E V+ P + GI K+++ + GFGF++ LD D+
Sbjct: 17 AEEAPKEAPEDVARAMDK----PQLLHGAGICKWFNVRMGFGFLSMTASTGVALDPAVDV 72
Query: 136 FVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGAPKVP 191
F+H+S + F+SL E V+F K +E+I VTGP G+ G+ ++P
Sbjct: 73 FMHQSKLHMEG----FRSLKKDEAVEFTFKKSAKGLESIRVTGPGGVFCIGSERLP 124
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 11/88 (12%)
Query: 1 MTKFEIHTVRGIVKFYDSKRGFGFIT-------RLDNKEDIFVHKSSIVKMNPKKFFQSL 53
M K ++ GI K+++ + GFGF++ LD D+F+H+S + F+SL
Sbjct: 32 MDKPQLLHGAGICKWFNVRMGFGFLSMTASTGVALDPAVDVFMHQSKLHMEG----FRSL 87
Query: 54 GLGEIVDFNIGVGKKDIEAINVTGPNGI 81
E V+F K +E+I VTGP G+
Sbjct: 88 KKDEAVEFTFKKSAKGLESIRVTGPGGV 115
>gi|117926229|ref|YP_866846.1| cold-shock DNA-binding protein family protein [Magnetococcus
marinus MC-1]
gi|117609985|gb|ABK45440.1| cold-shock DNA-binding protein family [Magnetococcus marinus
MC-1]
Length = 69
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 49/77 (63%), Gaps = 9/77 (11%)
Query: 1 MTKFEIHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVD 60
M+K E+ G VKF++ ++G+GFI+R D D+FVH S+I F++L G+ V+
Sbjct: 1 MSKREV----GTVKFFNEQKGYGFISREDGS-DVFVHFSAIQGSG----FRTLTQGQKVE 51
Query: 61 FNIGVGKKDIEAINVTG 77
F+ GKK ++A NVTG
Sbjct: 52 FDTVQGKKGLQAENVTG 68
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 44/67 (65%), Gaps = 5/67 (7%)
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 171
G VKF++ ++G+GFI+R D D+FVH S+I F++L G+ V+F+ GKK +
Sbjct: 7 GTVKFFNEQKGYGFISREDGS-DVFVHFSAIQGSG----FRTLTQGQKVEFDTVQGKKGL 61
Query: 172 EAINVTG 178
+A NVTG
Sbjct: 62 QAENVTG 68
>gi|244539314|dbj|BAH83357.1| cold shock protein E [Candidatus Ishikawaella capsulata Mpkobe]
Length = 72
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 69
+G VK+++ +GFGFIT D +D+FVH S+I F++L G+ V+F I G K
Sbjct: 7 KGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQGQG----FKTLAEGQSVEFEITEGAKG 62
Query: 70 IEAINVTGPN 79
A NVT N
Sbjct: 63 PSAANVTSLN 72
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Query: 111 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 170
+G VK+++ +GFGFIT D +D+FVH S+I F++L G+ V+F I G K
Sbjct: 7 KGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQGQG----FKTLAEGQSVEFEITEGAKG 62
Query: 171 IEAINVTGPN 180
A NVT N
Sbjct: 63 PSAANVTSLN 72
>gi|253989236|ref|YP_003040592.1| cold shock protein [Photorhabdus asymbiotica]
gi|253780686|emb|CAQ83848.1| cold shock protein [Photorhabdus asymbiotica]
Length = 69
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+ G VK+++ +GFGFIT D +D+FVH S+I F++L G+ V+F I G+K
Sbjct: 4 ITGTVKWFNESKGFGFITPADGSKDVFVHFSAIQSDG----FKTLAEGQKVEFEIQDGQK 59
Query: 69 DIEAINVT 76
A NVT
Sbjct: 60 GPSAANVT 67
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+ G VK+++ +GFGFIT D +D+FVH S+I F++L G+ V+F I G+K
Sbjct: 4 ITGTVKWFNESKGFGFITPADGSKDVFVHFSAIQSDG----FKTLAEGQKVEFEIQDGQK 59
Query: 170 DIEAINVT 177
A NVT
Sbjct: 60 GPSAANVT 67
>gi|400977275|pdb|3ULJ|A Chain A, Crystal Structure Of Apo Lin28b Cold Shock Domain
gi|400977276|pdb|3ULJ|B Chain B, Crystal Structure Of Apo Lin28b Cold Shock Domain
gi|403071904|pdb|4A75|A Chain A, The Lin28b Cold Shock Domain In Complex With
Hexathymidine.
gi|403071905|pdb|4A75|C Chain C, The Lin28b Cold Shock Domain In Complex With
Hexathymidine.
gi|403071906|pdb|4A75|E Chain E, The Lin28b Cold Shock Domain In Complex With
Hexathymidine.
gi|403071907|pdb|4A75|G Chain G, The Lin28b Cold Shock Domain In Complex With
Hexathymidine.
gi|403071912|pdb|4A76|A Chain A, The Lin28b Cold Shock Domain In Complex With
Heptathymidine
gi|403071914|pdb|4A76|C Chain C, The Lin28b Cold Shock Domain In Complex With
Heptathymidine
gi|403071916|pdb|4A76|E Chain E, The Lin28b Cold Shock Domain In Complex With
Heptathymidine
gi|403071918|pdb|4A76|G Chain G, The Lin28b Cold Shock Domain In Complex With
Heptathymidine
gi|403071930|pdb|4ALP|A Chain A, The Lin28b Cold Shock Domain In Complex With Hexauridine
gi|403071931|pdb|4ALP|B Chain B, The Lin28b Cold Shock Domain In Complex With Hexauridine
gi|403071932|pdb|4ALP|C Chain C, The Lin28b Cold Shock Domain In Complex With Hexauridine
gi|403071933|pdb|4ALP|D Chain D, The Lin28b Cold Shock Domain In Complex With Hexauridine
Length = 90
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 11/89 (12%)
Query: 105 PAVHTVRGIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLG 157
P V G K+++ + GFGFI+ L+N D+FVH+S + F+SL G
Sbjct: 4 PQVLRGSGHCKWFNVRMGFGFISMTSREGSPLENPVDVFVHQSKLYMEG----FRSLKEG 59
Query: 158 EIVDFNIGVGKKDIEAINVTGPNGIPVQG 186
E V+F K E++ VTGP G P G
Sbjct: 60 EPVEFTFKKSSKGFESLRVTGPGGNPCLG 88
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 11/82 (13%)
Query: 11 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
G K+++ + GFGFI+ L+N D+FVH+S + F+SL GE V+F
Sbjct: 11 GHCKWFNVRMGFGFISMTSREGSPLENPVDVFVHQSKLYMEG----FRSLKEGEPVEFTF 66
Query: 64 GVGKKDIEAINVTGPNGIPVQG 85
K E++ VTGP G P G
Sbjct: 67 KKSSKGFESLRVTGPGGNPCLG 88
>gi|163785451|ref|ZP_02180055.1| cold-shock domain family protein [Hydrogenivirga sp. 128-5-R1-1]
gi|159879277|gb|EDP73177.1| cold-shock domain family protein [Hydrogenivirga sp. 128-5-R1-1]
Length = 76
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 42/64 (65%), Gaps = 6/64 (9%)
Query: 103 FFPAVHTVR--GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIV 160
FF VR G VK+++SK+GFGFITR DN+ DIFVH S+I + F++L GE V
Sbjct: 2 FFWRYFVVRITGTVKWFNSKKGFGFITRDDNQGDIFVHYSAI----EGEGFKNLEEGEKV 57
Query: 161 DFNI 164
+F +
Sbjct: 58 EFEV 61
Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 39/55 (70%), Gaps = 4/55 (7%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
+ G VK+++SK+GFGFITR DN+ DIFVH S+I + F++L GE V+F +
Sbjct: 11 ITGTVKWFNSKKGFGFITRDDNQGDIFVHYSAI----EGEGFKNLEEGEKVEFEV 61
>gi|224370369|ref|YP_002604533.1| putative cold-shock protein [Desulfobacterium autotrophicum HRM2]
gi|223693086|gb|ACN16369.1| putative cold-shock protein [Desulfobacterium autotrophicum HRM2]
Length = 86
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 102 SFFPAVHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVD 161
+F H G VK+++ +GFGFI + +N ED+FVH SSI F+SL G+ V
Sbjct: 14 NFIGDCHMANGTVKWFNDSKGFGFIEQ-ENGEDLFVHHSSINATG----FKSLNEGDKVT 68
Query: 162 FNIGVGKKDIEAINVT 177
F++ G+K A NVT
Sbjct: 69 FDVEQGQKGPAAGNVT 84
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
Query: 5 EIHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIG 64
+ H G VK+++ +GFGFI + +N ED+FVH SSI F+SL G+ V F++
Sbjct: 18 DCHMANGTVKWFNDSKGFGFIEQ-ENGEDLFVHHSSINATG----FKSLNEGDKVTFDVE 72
Query: 65 VGKKDIEAINVT 76
G+K A NVT
Sbjct: 73 QGQKGPAAGNVT 84
>gi|386744398|ref|YP_006217577.1| cold shock protein CspE [Providencia stuartii MRSN 2154]
gi|384481091|gb|AFH94886.1| cold shock protein CspE [Providencia stuartii MRSN 2154]
Length = 69
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 4/70 (5%)
Query: 6 IHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGV 65
+ V+G VK+++ +GFGFIT D +D+FVH S+I F++L G+ V+F I
Sbjct: 1 MSKVKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIASEG----FKTLAEGQKVEFEITE 56
Query: 66 GKKDIEAINV 75
G K A+NV
Sbjct: 57 GAKGPSAVNV 66
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 4/67 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V+G VK+++ +GFGFIT D +D+FVH S+I F++L G+ V+F I G K
Sbjct: 4 VKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIASEG----FKTLAEGQKVEFEITEGAK 59
Query: 170 DIEAINV 176
A+NV
Sbjct: 60 GPSAVNV 66
>gi|149377667|ref|ZP_01895403.1| cold-shock DNA-binding domain family protein [Marinobacter
algicola DG893]
gi|149358020|gb|EDM46506.1| cold-shock DNA-binding domain family protein [Marinobacter
algicola DG893]
Length = 68
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 5/71 (7%)
Query: 6 IHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGV 65
+ T G VKF++ +GFGFITR + D+FVH S+I F++L G+ V+F +
Sbjct: 1 MSTTTGTVKFFNEAKGFGFITR-EGGPDVFVHYSAIQGSG----FKTLAEGQQVEFTVTQ 55
Query: 66 GKKDIEAINVT 76
G+K +A NVT
Sbjct: 56 GQKGPQAENVT 66
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 5/71 (7%)
Query: 107 VHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGV 166
+ T G VKF++ +GFGFITR + D+FVH S+I F++L G+ V+F +
Sbjct: 1 MSTTTGTVKFFNEAKGFGFITR-EGGPDVFVHYSAIQGSG----FKTLAEGQQVEFTVTQ 55
Query: 167 GKKDIEAINVT 177
G+K +A NVT
Sbjct: 56 GQKGPQAENVT 66
>gi|406896030|gb|EKD40436.1| hypothetical protein ACD_75C00054G0003 [uncultured bacterium]
Length = 71
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V+G VK++++ +G+GF+ R D + D+FVH S+I + F+SL G+ V+F I K
Sbjct: 5 VKGKVKWFNASKGYGFLERPDGESDVFVHYSAI----QGEGFRSLEEGDAVEFTIAKTDK 60
Query: 69 DIEAINVTGPN 79
++A NV+ N
Sbjct: 61 GLQAENVSKMN 71
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V+G VK++++ +G+GF+ R D + D+FVH S+I + F+SL G+ V+F I K
Sbjct: 5 VKGKVKWFNASKGYGFLERPDGESDVFVHYSAI----QGEGFRSLEEGDAVEFTIAKTDK 60
Query: 170 DIEAINVTGPN 180
++A NV+ N
Sbjct: 61 GLQAENVSKMN 71
>gi|253698845|ref|YP_003020034.1| cold-shock protein [Geobacter sp. M21]
gi|251773695|gb|ACT16276.1| cold-shock DNA-binding domain protein [Geobacter sp. M21]
Length = 66
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 45/68 (66%), Gaps = 5/68 (7%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+G+VK+++ +GFGFI + +N ED+FVH S+I + F+SL G+ V F++ G K
Sbjct: 2 AKGVVKWFNDSKGFGFIEQ-ENGEDVFVHFSAI----QGEGFKSLAEGDSVTFDVQQGPK 56
Query: 69 DIEAINVT 76
++A NVT
Sbjct: 57 GLQAANVT 64
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 45/68 (66%), Gaps = 5/68 (7%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+G+VK+++ +GFGFI + +N ED+FVH S+I + F+SL G+ V F++ G K
Sbjct: 2 AKGVVKWFNDSKGFGFIEQ-ENGEDVFVHFSAI----QGEGFKSLAEGDSVTFDVQQGPK 56
Query: 170 DIEAINVT 177
++A NVT
Sbjct: 57 GLQAANVT 64
>gi|390956516|ref|YP_006420273.1| cold shock protein [Terriglobus roseus DSM 18391]
gi|390411434|gb|AFL86938.1| cold shock protein [Terriglobus roseus DSM 18391]
Length = 66
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 43/67 (64%), Gaps = 5/67 (7%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 69
+G VK+++ +GFGFI+R DN ED+FVH ++I F+SL G+ V FN+ G K
Sbjct: 3 QGNVKWFNDAKGFGFISR-DNGEDVFVHHTAIQAQG----FRSLQEGQRVTFNVVKGPKG 57
Query: 70 IEAINVT 76
+A NV+
Sbjct: 58 WQAENVS 64
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 43/67 (64%), Gaps = 5/67 (7%)
Query: 111 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 170
+G VK+++ +GFGFI+R DN ED+FVH ++I F+SL G+ V FN+ G K
Sbjct: 3 QGNVKWFNDAKGFGFISR-DNGEDVFVHHTAIQAQG----FRSLQEGQRVTFNVVKGPKG 57
Query: 171 IEAINVT 177
+A NV+
Sbjct: 58 WQAENVS 64
>gi|383815630|ref|ZP_09971040.1| cold shock-like protein cspG [Serratia sp. M24T3]
gi|383295508|gb|EIC83832.1| cold shock-like protein cspG [Serratia sp. M24T3]
Length = 70
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 44/67 (65%), Gaps = 4/67 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+ G+VK++D+ +GFGFI+ D +D+FVH S+I + F++L G+ V+F+I G K
Sbjct: 5 MTGLVKWFDAGKGFGFISPADGSKDVFVHFSAIQSSD----FKTLDEGQKVEFSIENGAK 60
Query: 69 DIEAINV 75
A+NV
Sbjct: 61 GPSAVNV 67
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 44/67 (65%), Gaps = 4/67 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+ G+VK++D+ +GFGFI+ D +D+FVH S+I + F++L G+ V+F+I G K
Sbjct: 5 MTGLVKWFDAGKGFGFISPADGSKDVFVHFSAIQSSD----FKTLDEGQKVEFSIENGAK 60
Query: 170 DIEAINV 176
A+NV
Sbjct: 61 GPSAVNV 67
>gi|254469479|ref|ZP_05082884.1| cold shock protein [Pseudovibrio sp. JE062]
gi|374331566|ref|YP_005081750.1| cold-shock protein [Pseudovibrio sp. FO-BEG1]
gi|211961314|gb|EEA96509.1| cold shock protein [Pseudovibrio sp. JE062]
gi|359344354|gb|AEV37728.1| cold-shock DNA-binding domain protein [Pseudovibrio sp. FO-BEG1]
Length = 193
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 78/179 (43%), Gaps = 21/179 (11%)
Query: 2 TKFEIHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDF 61
T ++ V G +K++D +G+GF+ D+ D+ +H + + + +Q+ G V
Sbjct: 19 TALDVLQVAGTIKWFDIGKGYGFVEPEDDLPDVLLHVTCLRRDG----YQTAYEGARVVC 74
Query: 62 NIGVGKKDIEAINVTGPNGI----PVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFY 117
+ + ++A+ + + P Q P + V+ P V VK++
Sbjct: 75 EVLNRPRGLQAMRILSMDESYAVHPSQLPPSRTHVQVT---------PEGSFVEAEVKWF 125
Query: 118 DSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINV 176
+ +GFGF+TR + EDIF+H ++ + L G+ V G G K A V
Sbjct: 126 NRVKGFGFLTRGEGTEDIFIHMETLRRFG----ITELRPGQKVQVRFGDGPKGKMAAEV 180
>gi|425734442|ref|ZP_18852761.1| cold shock protein [Brevibacterium casei S18]
gi|425481709|gb|EKU48868.1| cold shock protein [Brevibacterium casei S18]
Length = 67
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 48/68 (70%), Gaps = 4/68 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+G VK++++++G+GFIT + +D+FVH S+I +M+ ++SL G+ V+F +G G+K
Sbjct: 2 AQGTVKWFNAEKGYGFITLEGDGQDVFVHWSAI-QMDG---YRSLEEGQQVEFEVGEGQK 57
Query: 69 DIEAINVT 76
+A +VT
Sbjct: 58 GPQAESVT 65
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 48/68 (70%), Gaps = 4/68 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+G VK++++++G+GFIT + +D+FVH S+I +M+ ++SL G+ V+F +G G+K
Sbjct: 2 AQGTVKWFNAEKGYGFITLEGDGQDVFVHWSAI-QMDG---YRSLEEGQQVEFEVGEGQK 57
Query: 170 DIEAINVT 177
+A +VT
Sbjct: 58 GPQAESVT 65
>gi|335429927|ref|ZP_08556823.1| cold-shock DNA-binding protein family protein [Haloplasma
contractile SSD-17B]
gi|334889009|gb|EGM27303.1| cold-shock DNA-binding protein family protein [Haloplasma
contractile SSD-17B]
Length = 71
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 45/69 (65%), Gaps = 4/69 (5%)
Query: 7 HTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVG 66
TV+GIVK++++++GFGFI R + DIFVH S+I +++L G+ V+F + G
Sbjct: 4 ETVKGIVKWFNNQKGFGFIVREETDGDIFVHYSAI----DVDGYKTLAEGDQVEFELIEG 59
Query: 67 KKDIEAINV 75
+ +A+NV
Sbjct: 60 ENGYQALNV 68
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 45/69 (65%), Gaps = 4/69 (5%)
Query: 108 HTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVG 167
TV+GIVK++++++GFGFI R + DIFVH S+I +++L G+ V+F + G
Sbjct: 4 ETVKGIVKWFNNQKGFGFIVREETDGDIFVHYSAI----DVDGYKTLAEGDQVEFELIEG 59
Query: 168 KKDIEAINV 176
+ +A+NV
Sbjct: 60 ENGYQALNV 68
>gi|183396658|dbj|BAG28257.1| hypothetical protein [Desulfotignum balticum]
Length = 67
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
G VK+++ +GFGFI + D +D+FVH S I M F+SL G+ V F+I G++
Sbjct: 2 ANGTVKWFNDAKGFGFIEQEDGGKDVFVHHSGINAMG----FKSLNEGDRVSFDISEGQR 57
Query: 69 DIEAINVT 76
A NVT
Sbjct: 58 GPAATNVT 65
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
G VK+++ +GFGFI + D +D+FVH S I M F+SL G+ V F+I G++
Sbjct: 2 ANGTVKWFNDAKGFGFIEQEDGGKDVFVHHSGINAMG----FKSLNEGDRVSFDISEGQR 57
Query: 170 DIEAINVT 177
A NVT
Sbjct: 58 GPAATNVT 65
>gi|126664472|ref|ZP_01735456.1| cold-shock DNA-binding domain family protein [Marinobacter sp.
ELB17]
gi|399546769|ref|YP_006560077.1| Cold shock protein CspV [Marinobacter sp. BSs20148]
gi|126630798|gb|EBA01412.1| cold-shock DNA-binding domain family protein [Marinobacter sp.
ELB17]
gi|399162101|gb|AFP32664.1| Cold shock protein CspV [Marinobacter sp. BSs20148]
Length = 68
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 5/70 (7%)
Query: 6 IHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGV 65
+ TV G VKF++ +GFGFITR + D+FVH SSI F++L G+ V+F +
Sbjct: 1 MSTVTGTVKFFNEAKGFGFITR-EGGPDVFVHYSSIQGGG----FKTLAEGQQVEFTVTQ 55
Query: 66 GKKDIEAINV 75
G+K +A NV
Sbjct: 56 GQKGPQAENV 65
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 5/70 (7%)
Query: 107 VHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGV 166
+ TV G VKF++ +GFGFITR + D+FVH SSI F++L G+ V+F +
Sbjct: 1 MSTVTGTVKFFNEAKGFGFITR-EGGPDVFVHYSSIQGGG----FKTLAEGQQVEFTVTQ 55
Query: 167 GKKDIEAINV 176
G+K +A NV
Sbjct: 56 GQKGPQAENV 65
>gi|375257267|ref|YP_005016437.1| 'cold-shock' DNA-binding domain protein [Klebsiella oxytoca KCTC
1686]
gi|365906745|gb|AEX02198.1| 'cold-shock' DNA-binding domain protein [Klebsiella oxytoca KCTC
1686]
Length = 72
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+ G+VK+++ +GFGFI+ LD +DIFVH S++ N K F+ G+ V+F I G K
Sbjct: 5 IMGLVKWFNEDKGFGFISPLDGSKDIFVHLSALDGDNFKTLFE----GQKVEFAIHRGDK 60
Query: 69 DIEAINVT 76
A NVT
Sbjct: 61 GPAAANVT 68
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+ G+VK+++ +GFGFI+ LD +DIFVH S++ N K F+ G+ V+F I G K
Sbjct: 5 IMGLVKWFNEDKGFGFISPLDGSKDIFVHLSALDGDNFKTLFE----GQKVEFAIHRGDK 60
Query: 170 DIEAINVT 177
A NVT
Sbjct: 61 GPAAANVT 68
>gi|206579907|ref|YP_002240730.1| cold-shock DNA-binding protein [Klebsiella pneumoniae 342]
gi|206568965|gb|ACI10741.1| 'cold-shock' DNA-binding domain protein [Klebsiella pneumoniae
342]
Length = 72
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+ G+VK+++ +GFGFI+ LD +DIFVH S++ N K F+ G+ V+F I G K
Sbjct: 5 IMGLVKWFNEDKGFGFISPLDGSKDIFVHLSALNGDNFKTLFE----GQKVEFAIHRGDK 60
Query: 69 DIEAINVT 76
A NVT
Sbjct: 61 GPAAANVT 68
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+ G+VK+++ +GFGFI+ LD +DIFVH S++ N K F+ G+ V+F I G K
Sbjct: 5 IMGLVKWFNEDKGFGFISPLDGSKDIFVHLSALNGDNFKTLFE----GQKVEFAIHRGDK 60
Query: 170 DIEAINVT 177
A NVT
Sbjct: 61 GPAAANVT 68
>gi|410088875|ref|ZP_11285539.1| cold shock protein E [Morganella morganii SC01]
gi|455739008|ref|YP_007505274.1| cold shock protein E [Morganella morganii subsp. morganii KT]
gi|455739826|ref|YP_007506092.1| cold shock protein E [Morganella morganii subsp. morganii KT]
gi|409764621|gb|EKN48799.1| cold shock protein E [Morganella morganii SC01]
gi|455420571|gb|AGG30901.1| cold shock protein E [Morganella morganii subsp. morganii KT]
gi|455421389|gb|AGG31719.1| cold shock protein E [Morganella morganii subsp. morganii KT]
Length = 70
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Query: 7 HTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVG 66
+T+ G VK+++ +GFGFIT D +D+FVH S+I + K F+ G+ V FNI G
Sbjct: 3 NTMTGSVKWFNESKGFGFITPADGSKDVFVHFSAIQSDSFKTLFE----GQNVTFNIEDG 58
Query: 67 KKDIEAINVTG 77
K A NV G
Sbjct: 59 AKGPSASNVVG 69
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Query: 108 HTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVG 167
+T+ G VK+++ +GFGFIT D +D+FVH S+I + K F+ G+ V FNI G
Sbjct: 3 NTMTGSVKWFNESKGFGFITPADGSKDVFVHFSAIQSDSFKTLFE----GQNVTFNIEDG 58
Query: 168 KKDIEAINVTG 178
K A NV G
Sbjct: 59 AKGPSASNVVG 69
>gi|432910371|ref|XP_004078334.1| PREDICTED: protein lin-28 homolog A-like [Oryzias latipes]
Length = 192
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 11/87 (12%)
Query: 112 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 164
G+ K+++ + GFGF++ LD D+FVH+S + F+SL GE V+F
Sbjct: 27 GVCKWFNVRMGFGFLSMTKREGVPLDEPVDVFVHQSKLHMEG----FRSLKEGEAVEFTY 82
Query: 165 GVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+ VTGP GI G+ + P
Sbjct: 83 KKSSKGLESQRVTGPGGIYCVGSERRP 109
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 11/78 (14%)
Query: 11 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
G+ K+++ + GFGF++ LD D+FVH+S + F+SL GE V+F
Sbjct: 27 GVCKWFNVRMGFGFLSMTKREGVPLDEPVDVFVHQSKLHMEG----FRSLKEGEAVEFTY 82
Query: 64 GVGKKDIEAINVTGPNGI 81
K +E+ VTGP GI
Sbjct: 83 KKSSKGLESQRVTGPGGI 100
>gi|238756793|ref|ZP_04618027.1| Cold shock-like protein cspI [Yersinia ruckeri ATCC 29473]
gi|238704988|gb|EEP97471.1| Cold shock-like protein cspI [Yersinia ruckeri ATCC 29473]
Length = 75
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 43/67 (64%), Gaps = 4/67 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+ G+VK++D+ +GFGFIT D +D+FVH S+I + F++L G+ V+F+I G K
Sbjct: 10 MTGLVKWFDAGKGFGFITPTDGSKDVFVHFSAIQSND----FKTLDEGQSVEFSIENGAK 65
Query: 69 DIEAINV 75
A NV
Sbjct: 66 GPSAANV 72
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 43/67 (64%), Gaps = 4/67 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+ G+VK++D+ +GFGFIT D +D+FVH S+I + F++L G+ V+F+I G K
Sbjct: 10 MTGLVKWFDAGKGFGFITPTDGSKDVFVHFSAIQSND----FKTLDEGQSVEFSIENGAK 65
Query: 170 DIEAINV 176
A NV
Sbjct: 66 GPSAANV 72
>gi|322417715|ref|YP_004196938.1| cold-shock DNA-binding domain-containing protein [Geobacter sp.
M18]
gi|320124102|gb|ADW11662.1| cold-shock DNA-binding domain protein [Geobacter sp. M18]
Length = 66
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 44/68 (64%), Gaps = 5/68 (7%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+G+VK+++ +GFGFI + +N ED+FVH S+I F+SL G+ V F++ G K
Sbjct: 2 AKGVVKWFNDSKGFGFIEQ-ENGEDVFVHFSAI----QSDGFKSLAEGDSVTFDVQQGPK 56
Query: 69 DIEAINVT 76
++A NVT
Sbjct: 57 GLQAANVT 64
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 44/68 (64%), Gaps = 5/68 (7%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+G+VK+++ +GFGFI + +N ED+FVH S+I F+SL G+ V F++ G K
Sbjct: 2 AKGVVKWFNDSKGFGFIEQ-ENGEDVFVHFSAI----QSDGFKSLAEGDSVTFDVQQGPK 56
Query: 170 DIEAINVT 177
++A NVT
Sbjct: 57 GLQAANVT 64
>gi|423120606|ref|ZP_17108290.1| cold shock-like protein CspB [Klebsiella oxytoca 10-5246]
gi|376396107|gb|EHT08750.1| cold shock-like protein CspB [Klebsiella oxytoca 10-5246]
Length = 71
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 44/68 (64%), Gaps = 4/68 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+ G+VK++++ +GFGFIT D +DIFVH S+I + F++L G+ V+F +G G K
Sbjct: 5 MTGLVKWFNADKGFGFITPADGSKDIFVHFSAIQSED----FRTLFEGQKVEFVVGSGAK 60
Query: 69 DIEAINVT 76
A NV+
Sbjct: 61 GPAATNVS 68
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 44/68 (64%), Gaps = 4/68 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+ G+VK++++ +GFGFIT D +DIFVH S+I + F++L G+ V+F +G G K
Sbjct: 5 MTGLVKWFNADKGFGFITPADGSKDIFVHFSAIQSED----FRTLFEGQKVEFVVGSGAK 60
Query: 170 DIEAINVT 177
A NV+
Sbjct: 61 GPAATNVS 68
>gi|188996314|ref|YP_001930565.1| cold-shock DNA-binding domain-containing protein
[Sulfurihydrogenibium sp. YO3AOP1]
gi|188931381|gb|ACD66011.1| cold-shock DNA-binding domain protein [Sulfurihydrogenibium sp.
YO3AOP1]
Length = 68
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 37/56 (66%), Gaps = 4/56 (7%)
Query: 8 TVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
V G VK++DSK+GFGFITR DN +DIFVH S+I F++L G+ V F I
Sbjct: 2 AVTGTVKWFDSKKGFGFITRDDNGQDIFVHFSAIQGSG----FKNLEEGQKVRFEI 53
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 37/56 (66%), Gaps = 4/56 (7%)
Query: 109 TVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 164
V G VK++DSK+GFGFITR DN +DIFVH S+I F++L G+ V F I
Sbjct: 2 AVTGTVKWFDSKKGFGFITRDDNGQDIFVHFSAIQGSG----FKNLEEGQKVRFEI 53
>gi|195648068|gb|ACG43502.1| glycine-rich protein 2b [Zea mays]
Length = 208
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 44/73 (60%), Gaps = 5/73 (6%)
Query: 106 AVHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIG 165
A V G VK+++ +GFGFIT D ED+FVH+SSI ++SL G+ V++ +G
Sbjct: 2 ASDRVLGTVKWFNGTKGFGFITPDDGSEDLFVHQSSI----KSDGYRSLNDGDAVEYTVG 57
Query: 166 VGKK-DIEAINVT 177
G +A++VT
Sbjct: 58 SGNDGXAKALDVT 70
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 5/69 (7%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ +GFGFIT D ED+FVH+SSI ++SL G+ V++ +G G
Sbjct: 6 VLGTVKWFNGTKGFGFITPDDGSEDLFVHQSSI----KSDGYRSLNDGDAVEYTVGSGND 61
Query: 69 -DIEAINVT 76
+A++VT
Sbjct: 62 GXAKALDVT 70
>gi|386744891|ref|YP_006218070.1| cold shock transcription antiterminator [Providencia stuartii
MRSN 2154]
gi|422014784|ref|ZP_16361393.1| cold shock transcription antiterminator [Providencia
burhodogranariea DSM 19968]
gi|422022378|ref|ZP_16368886.1| cold shock transcription antiterminator [Providencia sneebia DSM
19967]
gi|384481584|gb|AFH95379.1| cold shock transcription antiterminator [Providencia stuartii
MRSN 2154]
gi|414096871|gb|EKT58527.1| cold shock transcription antiterminator [Providencia sneebia DSM
19967]
gi|414100664|gb|EKT62279.1| cold shock transcription antiterminator [Providencia
burhodogranariea DSM 19968]
Length = 70
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
++G VK+++ +GFGFIT D +D+FVH S+I F++L G+ V+F I G K
Sbjct: 5 MKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGAG----FKTLAEGQQVEFTIENGAK 60
Query: 69 DIEAINVT 76
A NVT
Sbjct: 61 GPAAANVT 68
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
++G VK+++ +GFGFIT D +D+FVH S+I F++L G+ V+F I G K
Sbjct: 5 MKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGAG----FKTLAEGQQVEFTIENGAK 60
Query: 170 DIEAINVT 177
A NVT
Sbjct: 61 GPAAANVT 68
>gi|384919211|ref|ZP_10019269.1| cold-shock DNA-binding domain-containing protein [Citreicella sp.
357]
gi|384466937|gb|EIE51424.1| cold-shock DNA-binding domain-containing protein [Citreicella sp.
357]
Length = 180
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 63/149 (42%), Gaps = 15/149 (10%)
Query: 5 EIHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIG 64
E V G VK++D +GFGF+ + DI +H + + G+ EIV
Sbjct: 11 EAQRVLGKVKWFDPVKGFGFVIADEGGPDILLHANVLRNFGQSSVADGAGI-EIVIQRTD 69
Query: 65 VGKKDIEAINVTGPNGIPVQGAPKSSSETVS-GTYRNDSFFPAVHTVRGIVKFYDSKRGF 123
G + E + + P +G P + E + R PA VK++D +GF
Sbjct: 70 RGVQATEVLTIAPPEA--PEGVPLADFEGIDPEVMRAAPLEPAR------VKWFDKAKGF 121
Query: 124 GFITRLDNKEDIFVH-----KSSIVKMNP 147
GF + +DIF+H +S + + P
Sbjct: 122 GFANTFGSSDDIFIHIEVLRRSGLADLQP 150
>gi|260428547|ref|ZP_05782526.1| cold shock DNA-binding domain protein [Citreicella sp. SE45]
gi|260423039|gb|EEX16290.1| cold shock DNA-binding domain protein [Citreicella sp. SE45]
Length = 180
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 82/187 (43%), Gaps = 28/187 (14%)
Query: 1 MTKF--EIHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQ-SLGLGE 57
+T++ E H V G VK++D +GFGF+ + DI +H + + + F Q S+ G
Sbjct: 5 LTQYQEEAHHVLGKVKWFDPVKGFGFVVADEGGPDILLHANVL-----RNFGQSSVADGA 59
Query: 58 IVDFNIGVGKKDIEAINV------TGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVR 111
++ + + I+A V P G+P+ E + R PA
Sbjct: 60 RIEVAVQRTDRGIQATEVHHIEPPVAPAGVPLADFEGIDPEVM----RAAPLEPAR---- 111
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 171
VK++D +GFGF +D+F+H +++ + L GE + + GK+ +
Sbjct: 112 --VKWFDKAKGFGFANVFGRSDDVFIH----IEVLRRSGLADLQPGEALAIRLIDGKRGL 165
Query: 172 EAINVTG 178
A V+
Sbjct: 166 MATEVSA 172
>gi|86156680|ref|YP_463465.1| cold-shock DNA-binding protein family protein [Anaeromyxobacter
dehalogenans 2CP-C]
gi|197120682|ref|YP_002132633.1| cold-shock DNA-binding domain-containing protein
[Anaeromyxobacter sp. K]
gi|220915394|ref|YP_002490698.1| cold-shock DNA-binding domain-containing protein
[Anaeromyxobacter dehalogenans 2CP-1]
gi|85773191|gb|ABC80028.1| cold-shock DNA-binding protein family [Anaeromyxobacter
dehalogenans 2CP-C]
gi|196170531|gb|ACG71504.1| cold-shock DNA-binding domain protein [Anaeromyxobacter sp. K]
gi|219953248|gb|ACL63632.1| cold-shock DNA-binding domain protein [Anaeromyxobacter
dehalogenans 2CP-1]
Length = 67
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 41/65 (63%), Gaps = 4/65 (6%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 70
G VK+++ +GFGFIT+ D ED+F H S+I F+SL G+ V+F++ G K +
Sbjct: 4 GTVKWFNDAKGFGFITQDDGGEDVFCHYSAI----SGDGFKSLAEGQKVEFDVVKGPKGL 59
Query: 71 EAINV 75
+A NV
Sbjct: 60 QAANV 64
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 41/65 (63%), Gaps = 4/65 (6%)
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 171
G VK+++ +GFGFIT+ D ED+F H S+I F+SL G+ V+F++ G K +
Sbjct: 4 GTVKWFNDAKGFGFITQDDGGEDVFCHYSAI----SGDGFKSLAEGQKVEFDVVKGPKGL 59
Query: 172 EAINV 176
+A NV
Sbjct: 60 QAANV 64
>gi|444722944|gb|ELW63616.1| Y-box-binding protein 2 [Tupaia chinensis]
Length = 301
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 32/40 (80%)
Query: 29 DNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
D KED+FVH+++I + NP+KF +S+G GE V+F++ G+K
Sbjct: 7 DTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEK 46
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 32/40 (80%)
Query: 130 DNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
D KED+FVH+++I + NP+KF +S+G GE V+F++ G+K
Sbjct: 7 DTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEK 46
>gi|377565966|ref|ZP_09795242.1| putative cold shock protein [Gordonia sputi NBRC 100414]
gi|377526880|dbj|GAB40407.1| putative cold shock protein [Gordonia sputi NBRC 100414]
Length = 67
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+G VK+++ ++GFGFI D +D+FVH S+I F+SL + V+F++ G K
Sbjct: 2 TQGTVKWFNGEKGFGFIAPDDQSQDVFVHYSAITGSG----FRSLEEQQRVEFDVEQGAK 57
Query: 69 DIEAINVTG 77
++A NVT
Sbjct: 58 GLQATNVTA 66
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+G VK+++ ++GFGFI D +D+FVH S+I F+SL + V+F++ G K
Sbjct: 2 TQGTVKWFNGEKGFGFIAPDDQSQDVFVHYSAITGSG----FRSLEEQQRVEFDVEQGAK 57
Query: 170 DIEAINVTG 178
++A NVT
Sbjct: 58 GLQATNVTA 66
>gi|157371292|ref|YP_001479281.1| cold-shock DNA-binding domain-containing protein [Serratia
proteamaculans 568]
gi|270262466|ref|ZP_06190737.1| hypothetical protein SOD_c00830 [Serratia odorifera 4Rx13]
gi|293395496|ref|ZP_06639780.1| CspA family cold shock transcriptional regulator [Serratia
odorifera DSM 4582]
gi|320539351|ref|ZP_08039020.1| putative cold-shock DNA-binding domain-containing protein
[Serratia symbiotica str. Tucson]
gi|333927974|ref|YP_004501553.1| cold-shock DNA-binding domain-containing protein [Serratia sp.
AS12]
gi|333932927|ref|YP_004506505.1| cold-shock DNA-binding domain-containing protein [Serratia
plymuthica AS9]
gi|374314095|ref|YP_005060524.1| cold shock protein [Serratia symbiotica str. 'Cinara cedri']
gi|386329798|ref|YP_006025968.1| cold-shock protein [Serratia sp. AS13]
gi|386824132|ref|ZP_10111270.1| cold shock protein [Serratia plymuthica PRI-2C]
gi|421784229|ref|ZP_16220671.1| putative cold-shock DNA-binding domain-containing protein
[Serratia plymuthica A30]
gi|157323056|gb|ABV42153.1| cold-shock DNA-binding domain protein [Serratia proteamaculans
568]
gi|270043150|gb|EFA16243.1| hypothetical protein SOD_c00830 [Serratia odorifera 4Rx13]
gi|291422180|gb|EFE95425.1| CspA family cold shock transcriptional regulator [Serratia
odorifera DSM 4582]
gi|320030476|gb|EFW12486.1| putative cold-shock DNA-binding domain-containing protein
[Serratia symbiotica str. Tucson]
gi|333474534|gb|AEF46244.1| cold-shock DNA-binding domain protein [Serratia plymuthica AS9]
gi|333492034|gb|AEF51196.1| cold-shock DNA-binding domain protein [Serratia sp. AS12]
gi|333962131|gb|AEG28904.1| cold-shock DNA-binding domain protein [Serratia sp. AS13]
gi|363988321|gb|AEW44512.1| cold shock protein [Serratia symbiotica str. 'Cinara cedri']
gi|386378959|gb|EIJ19758.1| cold shock protein [Serratia plymuthica PRI-2C]
gi|407753668|gb|EKF63809.1| putative cold-shock DNA-binding domain-containing protein
[Serratia plymuthica A30]
Length = 70
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 7 HTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVG 66
+ ++G VK+++ +GFGFIT D +D+FVH S+I + F++L G+ V F+I G
Sbjct: 3 NMIKGQVKWFNESKGFGFITPADGSKDVFVHFSAI----QDQGFKTLAEGQNVQFSIENG 58
Query: 67 KKDIEAINVTG 77
K A NVT
Sbjct: 59 AKGPSAANVTA 69
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 108 HTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVG 167
+ ++G VK+++ +GFGFIT D +D+FVH S+I + F++L G+ V F+I G
Sbjct: 3 NMIKGQVKWFNESKGFGFITPADGSKDVFVHFSAI----QDQGFKTLAEGQNVQFSIENG 58
Query: 168 KKDIEAINVTG 178
K A NVT
Sbjct: 59 AKGPSAANVTA 69
>gi|448242837|ref|YP_007406890.1| cold-shock DNA-binding domain-containing protein [Serratia
marcescens WW4]
gi|445213201|gb|AGE18871.1| cold-shock DNA-binding domain-containing protein [Serratia
marcescens WW4]
gi|453064204|gb|EMF05176.1| cold-shock protein [Serratia marcescens VGH107]
Length = 70
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 7 HTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVG 66
+ ++G VK+++ +GFGFIT D +D+FVH S+I + F++L G+ V F+I G
Sbjct: 3 NMIKGQVKWFNEAKGFGFITPADGSKDVFVHFSAI----QDQGFKTLAEGQNVQFSIENG 58
Query: 67 KKDIEAINVTG 77
K A NVT
Sbjct: 59 AKGPSAANVTA 69
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 108 HTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVG 167
+ ++G VK+++ +GFGFIT D +D+FVH S+I + F++L G+ V F+I G
Sbjct: 3 NMIKGQVKWFNEAKGFGFITPADGSKDVFVHFSAI----QDQGFKTLAEGQNVQFSIENG 58
Query: 168 KKDIEAINVTG 178
K A NVT
Sbjct: 59 AKGPSAANVTA 69
>gi|336250667|ref|YP_004594377.1| cold-shock' DNA-binding domain-containing protein [Enterobacter
aerogenes KCTC 2190]
gi|334736723|gb|AEG99098.1| 'cold-shock' DNA-binding domain protein [Enterobacter aerogenes
KCTC 2190]
Length = 72
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+ G+VK+++ +GFGFI+ LD +DIFVH S++ N K F+ G+ V+F I G K
Sbjct: 5 IMGLVKWFNEDKGFGFISPLDGSKDIFVHLSALNGDNFKTLFE----GQKVEFAIHRGDK 60
Query: 69 DIEAINVT 76
A NVT
Sbjct: 61 GPTAANVT 68
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+ G+VK+++ +GFGFI+ LD +DIFVH S++ N K F+ G+ V+F I G K
Sbjct: 5 IMGLVKWFNEDKGFGFISPLDGSKDIFVHLSALNGDNFKTLFE----GQKVEFAIHRGDK 60
Query: 170 DIEAINVT 177
A NVT
Sbjct: 61 GPTAANVT 68
>gi|238762682|ref|ZP_04623651.1| Cold shock-like protein cspI [Yersinia kristensenii ATCC 33638]
gi|238698987|gb|EEP91735.1| Cold shock-like protein cspI [Yersinia kristensenii ATCC 33638]
Length = 80
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 45/67 (67%), Gaps = 4/67 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+ G+VK++D+ +GFGFI+ D +D+FVH S+I + +++L G+ V+F+I G+K
Sbjct: 15 MTGLVKWFDAGKGFGFISPADGSKDVFVHFSAIQGTD----YKTLDEGQNVEFSIEQGQK 70
Query: 69 DIEAINV 75
A+NV
Sbjct: 71 GPSAVNV 77
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 45/67 (67%), Gaps = 4/67 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+ G+VK++D+ +GFGFI+ D +D+FVH S+I + +++L G+ V+F+I G+K
Sbjct: 15 MTGLVKWFDAGKGFGFISPADGSKDVFVHFSAIQGTD----YKTLDEGQNVEFSIEQGQK 70
Query: 170 DIEAINV 176
A+NV
Sbjct: 71 GPSAVNV 77
>gi|94968921|ref|YP_590969.1| cold-shock DNA-binding protein family protein [Candidatus
Koribacter versatilis Ellin345]
gi|94550971|gb|ABF40895.1| cold-shock DNA-binding protein family [Candidatus Koribacter
versatilis Ellin345]
Length = 66
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 42/66 (63%), Gaps = 5/66 (7%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 69
+G VK+++ +GFGFI+R N ED+FVH ++I + F+SL G+ V FN+ G K
Sbjct: 3 QGTVKWFNDAKGFGFISR-QNGEDVFVHHTAI----QAQGFRSLQEGQAVQFNVVKGPKG 57
Query: 70 IEAINV 75
+A NV
Sbjct: 58 WQAENV 63
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 42/66 (63%), Gaps = 5/66 (7%)
Query: 111 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 170
+G VK+++ +GFGFI+R N ED+FVH ++I + F+SL G+ V FN+ G K
Sbjct: 3 QGTVKWFNDAKGFGFISR-QNGEDVFVHHTAI----QAQGFRSLQEGQAVQFNVVKGPKG 57
Query: 171 IEAINV 176
+A NV
Sbjct: 58 WQAENV 63
>gi|402819381|ref|ZP_10868949.1| hypothetical protein IMCC14465_01830 [alpha proteobacterium
IMCC14465]
gi|402511528|gb|EJW21789.1| hypothetical protein IMCC14465_01830 [alpha proteobacterium
IMCC14465]
Length = 231
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 64/143 (44%), Gaps = 18/143 (12%)
Query: 5 EIHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGL-GEIVDFNI 63
E + V G VK++D K+GFGF+ D D+ VH++ + + L +V N
Sbjct: 55 EGYIVEGTVKWFDPKKGFGFVVPNDGGADVLVHQTVLKFAGHDIIYPGATLKCMVVQRNQ 114
Query: 64 GVGKKDIEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGI----VKFYDS 119
G+ + I A++ S ++ R S P + + + VK+++
Sbjct: 115 GLQAEQIIAVD-------------NSQAQIPRPPPRPTSILPDIEEISELQPAQVKWFNR 161
Query: 120 KRGFGFITRLDNKEDIFVHKSSI 142
RG+GF+ + DIF+H ++
Sbjct: 162 IRGYGFVNIDSGEPDIFMHMETL 184
Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 105 PAVHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSI 142
P + V G VK++D K+GFGF+ D D+ VH++ +
Sbjct: 54 PEGYIVEGTVKWFDPKKGFGFVVPNDGGADVLVHQTVL 91
>gi|295394500|ref|ZP_06804723.1| cold shock protein CspA [Brevibacterium mcbrellneri ATCC 49030]
gi|294972679|gb|EFG48531.1| cold shock protein CspA [Brevibacterium mcbrellneri ATCC 49030]
Length = 67
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 46/68 (67%), Gaps = 4/68 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+G VK++++++G+GFIT + +DIFVH S I +M+ ++SL G+ V+FN+G G K
Sbjct: 2 TQGTVKWFNAEKGYGFITVDGSDQDIFVHYSEI-QMDG---YRSLQEGQQVEFNVGQGDK 57
Query: 69 DIEAINVT 76
+A VT
Sbjct: 58 GPQAEGVT 65
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 46/68 (67%), Gaps = 4/68 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+G VK++++++G+GFIT + +DIFVH S I +M+ ++SL G+ V+FN+G G K
Sbjct: 2 TQGTVKWFNAEKGYGFITVDGSDQDIFVHYSEI-QMDG---YRSLQEGQQVEFNVGQGDK 57
Query: 170 DIEAINVT 177
+A VT
Sbjct: 58 GPQAEGVT 65
>gi|94500606|ref|ZP_01307136.1| Cold shock protein [Oceanobacter sp. RED65]
gi|94427161|gb|EAT12141.1| Cold shock protein [Oceanobacter sp. RED65]
Length = 171
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 45/67 (67%), Gaps = 5/67 (7%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 69
RG+VK+++ K+GFGFITR DN ED+FVH SI + SL G+ V F++ G+K
Sbjct: 107 RGLVKWFNVKKGFGFITR-DNGEDVFVHFRSIRGTGHR----SLSEGQNVKFSVVDGQKG 161
Query: 70 IEAINVT 76
++A +V+
Sbjct: 162 LQAEDVS 168
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 45/67 (67%), Gaps = 5/67 (7%)
Query: 111 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 170
RG+VK+++ K+GFGFITR DN ED+FVH SI + SL G+ V F++ G+K
Sbjct: 107 RGLVKWFNVKKGFGFITR-DNGEDVFVHFRSIRGTGHR----SLSEGQNVKFSVVDGQKG 161
Query: 171 IEAINVT 177
++A +V+
Sbjct: 162 LQAEDVS 168
>gi|365924654|ref|ZP_09447417.1| cold shock protein [Lactobacillus mali KCTC 3596 = DSM 20444]
gi|420264798|ref|ZP_14767404.1| cold shock protein [Lactobacillus mali KCTC 3596 = DSM 20444]
gi|394429767|gb|EJF02166.1| cold shock protein [Lactobacillus mali KCTC 3596 = DSM 20444]
Length = 68
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 44/67 (65%), Gaps = 4/67 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+ G V F++ G+GFIT DN++DIFVH S+I + +++L G+ V+F + +GK+
Sbjct: 2 LTGTVHFFEKDEGYGFITPDDNEQDIFVHFSAI----KTEGYKTLVEGQRVEFAVAIGKR 57
Query: 69 DIEAINV 75
+A+NV
Sbjct: 58 GPQAVNV 64
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 44/67 (65%), Gaps = 4/67 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+ G V F++ G+GFIT DN++DIFVH S+I + +++L G+ V+F + +GK+
Sbjct: 2 LTGTVHFFEKDEGYGFITPDDNEQDIFVHFSAI----KTEGYKTLVEGQRVEFAVAIGKR 57
Query: 170 DIEAINV 176
+A+NV
Sbjct: 58 GPQAVNV 64
>gi|383786798|ref|YP_005471367.1| cold shock protein [Fervidobacterium pennivorans DSM 9078]
gi|383109645|gb|AFG35248.1| cold shock protein [Fervidobacterium pennivorans DSM 9078]
Length = 66
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 46/67 (68%), Gaps = 5/67 (7%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
++G VK++D+K+G+GFIT+ D EDIFVH S+I + F++L G+ V+F++ G K
Sbjct: 1 MKGTVKWFDAKKGYGFITKEDG-EDIFVHYSAI----QVEGFKTLKEGDKVEFDVQNGAK 55
Query: 69 DIEAINV 75
+A NV
Sbjct: 56 GPQAANV 62
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 46/67 (68%), Gaps = 5/67 (7%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
++G VK++D+K+G+GFIT+ D EDIFVH S+I + F++L G+ V+F++ G K
Sbjct: 1 MKGTVKWFDAKKGYGFITKEDG-EDIFVHYSAI----QVEGFKTLKEGDKVEFDVQNGAK 55
Query: 170 DIEAINV 176
+A NV
Sbjct: 56 GPQAANV 62
>gi|238750463|ref|ZP_04611964.1| Cold shock-like protein cspI [Yersinia rohdei ATCC 43380]
gi|238790115|ref|ZP_04633892.1| Cold shock-like protein cspI [Yersinia frederiksenii ATCC 33641]
gi|238794420|ref|ZP_04638030.1| Cold shock-like protein cspI [Yersinia intermedia ATCC 29909]
gi|238711394|gb|EEQ03611.1| Cold shock-like protein cspI [Yersinia rohdei ATCC 43380]
gi|238721784|gb|EEQ13447.1| Cold shock-like protein cspI [Yersinia frederiksenii ATCC 33641]
gi|238726215|gb|EEQ17759.1| Cold shock-like protein cspI [Yersinia intermedia ATCC 29909]
Length = 66
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 45/67 (67%), Gaps = 4/67 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+ G+VK++D+ +GFGFI+ D +D+FVH S+I + +++L G+ V+F+I G+K
Sbjct: 1 MTGLVKWFDAGKGFGFISPADGSKDVFVHFSAIQGTD----YKTLDEGQNVEFSIEQGQK 56
Query: 69 DIEAINV 75
A+NV
Sbjct: 57 GPSAVNV 63
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 45/67 (67%), Gaps = 4/67 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+ G+VK++D+ +GFGFI+ D +D+FVH S+I + +++L G+ V+F+I G+K
Sbjct: 1 MTGLVKWFDAGKGFGFISPADGSKDVFVHFSAIQGTD----YKTLDEGQNVEFSIEQGQK 56
Query: 170 DIEAINV 176
A+NV
Sbjct: 57 GPSAVNV 63
>gi|51597878|ref|YP_072069.1| cold-shock protein CspA [Yersinia pseudotuberculosis IP 32953]
gi|186897074|ref|YP_001874186.1| cold-shock DNA-binding domain-containing protein [Yersinia
pseudotuberculosis PB1/+]
gi|51591160|emb|CAH22825.1| major cold shock protein Cspa2 [Yersinia pseudotuberculosis IP
32953]
gi|186700100|gb|ACC90729.1| cold-shock DNA-binding domain protein [Yersinia
pseudotuberculosis PB1/+]
Length = 70
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 44/67 (65%), Gaps = 4/67 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+ G+VK++D+ +GFGFIT D +D+FVH S+I + F++L G+ V+F+I G K
Sbjct: 5 MTGLVKWFDAGKGFGFITPADGGKDVFVHFSAIQSND----FKTLDEGQNVEFSIENGAK 60
Query: 69 DIEAINV 75
A+NV
Sbjct: 61 GPAAVNV 67
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 44/67 (65%), Gaps = 4/67 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+ G+VK++D+ +GFGFIT D +D+FVH S+I + F++L G+ V+F+I G K
Sbjct: 5 MTGLVKWFDAGKGFGFITPADGGKDVFVHFSAIQSND----FKTLDEGQNVEFSIENGAK 60
Query: 170 DIEAINV 176
A+NV
Sbjct: 61 GPAAVNV 67
>gi|422014648|ref|ZP_16361257.1| cold shock protein [Providencia burhodogranariea DSM 19968]
gi|414100528|gb|EKT62143.1| cold shock protein [Providencia burhodogranariea DSM 19968]
Length = 70
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 7 HTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVG 66
+T+ G VK++++ +GFGFI+ D +D+FVH S+I N F+SL G+ V F I G
Sbjct: 3 NTMTGTVKWFNNDKGFGFISPKDGSKDVFVHFSAIQSSN----FKSLNEGQEVSFTIENG 58
Query: 67 KKDIEAINV 75
K A NV
Sbjct: 59 AKGPAAANV 67
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 108 HTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVG 167
+T+ G VK++++ +GFGFI+ D +D+FVH S+I N F+SL G+ V F I G
Sbjct: 3 NTMTGTVKWFNNDKGFGFISPKDGSKDVFVHFSAIQSSN----FKSLNEGQEVSFTIENG 58
Query: 168 KKDIEAINV 176
K A NV
Sbjct: 59 AKGPAAANV 67
>gi|422769141|ref|ZP_16822863.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli E1520]
gi|323934238|gb|EGB30662.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli E1520]
Length = 71
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 43/67 (64%), Gaps = 4/67 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+ G+VK+++S +GFGFI+ D +D+FVH S+I N F++L G+ V+F+I G K
Sbjct: 5 MTGLVKWFNSDKGFGFISPADGSKDVFVHFSAIQSNN----FRTLEEGQQVEFSIENGAK 60
Query: 69 DIEAINV 75
A NV
Sbjct: 61 GPAAANV 67
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 43/67 (64%), Gaps = 4/67 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+ G+VK+++S +GFGFI+ D +D+FVH S+I N F++L G+ V+F+I G K
Sbjct: 5 MTGLVKWFNSDKGFGFISPADGSKDVFVHFSAIQSNN----FRTLEEGQQVEFSIENGAK 60
Query: 170 DIEAINV 176
A NV
Sbjct: 61 GPAAANV 67
>gi|238784838|ref|ZP_04628839.1| Cold shock-like protein cspI [Yersinia bercovieri ATCC 43970]
gi|238714254|gb|EEQ06265.1| Cold shock-like protein cspI [Yersinia bercovieri ATCC 43970]
Length = 70
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 45/67 (67%), Gaps = 4/67 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+ G+VK++D+ +GFGFI+ D +D+FVH S+I + +++L G+ V+F+I G+K
Sbjct: 5 MTGLVKWFDAGKGFGFISPADGSKDVFVHFSAIQGTD----YKTLDEGQNVEFSIEQGQK 60
Query: 69 DIEAINV 75
A+NV
Sbjct: 61 GPSAVNV 67
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 45/67 (67%), Gaps = 4/67 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+ G+VK++D+ +GFGFI+ D +D+FVH S+I + +++L G+ V+F+I G+K
Sbjct: 5 MTGLVKWFDAGKGFGFISPADGSKDVFVHFSAIQGTD----YKTLDEGQNVEFSIEQGQK 60
Query: 170 DIEAINV 176
A+NV
Sbjct: 61 GPSAVNV 67
>gi|319939553|ref|ZP_08013913.1| cold shock protein [Streptococcus anginosus 1_2_62CV]
gi|319811539|gb|EFW07834.1| cold shock protein [Streptococcus anginosus 1_2_62CV]
Length = 67
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 46/68 (67%), Gaps = 5/68 (7%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+G VK++++++GFGFI++ +N D+F H S+I F+SL GE V F+I G++
Sbjct: 2 AQGTVKWFNAEKGFGFISQ-ENGPDVFAHFSAI----QSDGFKSLNEGEKVTFDIEEGQR 56
Query: 69 DIEAINVT 76
++AIN+T
Sbjct: 57 GLQAINIT 64
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 46/68 (67%), Gaps = 5/68 (7%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+G VK++++++GFGFI++ +N D+F H S+I F+SL GE V F+I G++
Sbjct: 2 AQGTVKWFNAEKGFGFISQ-ENGPDVFAHFSAI----QSDGFKSLNEGEKVTFDIEEGQR 56
Query: 170 DIEAINVT 177
++AIN+T
Sbjct: 57 GLQAINIT 64
>gi|260433622|ref|ZP_05787593.1| cold shock DNA-binding domain protein [Silicibacter
lacuscaerulensis ITI-1157]
gi|260417450|gb|EEX10709.1| cold shock DNA-binding domain protein [Silicibacter
lacuscaerulensis ITI-1157]
Length = 175
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 65/148 (43%), Gaps = 15/148 (10%)
Query: 6 IHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGV 65
++ VRG VK++D +G+GF+ + DI +H + + G+ EI+
Sbjct: 8 MYRVRGHVKWFDPSKGYGFVVSDEGGPDILLHVNVLRNFGQSSVADGAGI-EIMTHRTDR 66
Query: 66 GKKDIEAINVTGPNGIPVQGAPKSSSETVSGTYRND-SFFPAVHTVRGIVKFYDSKRGFG 124
G + +E I++ P ++ S ++ D + V VK++D +GFG
Sbjct: 67 GVQAVEVISIDPPE--------RADSVMLADFAEMDPAVIAEAPLVAARVKWFDKAKGFG 118
Query: 125 FITRLDNKEDIFVH-----KSSIVKMNP 147
F ED+F+H +S + + P
Sbjct: 119 FANVFGRSEDVFLHIEVLRRSGLADLQP 146
>gi|224012555|ref|XP_002294930.1| cold-shock DNA-binding domain-containing protein [Thalassiosira
pseudonana CCMP1335]
gi|220969369|gb|EED87710.1| cold-shock DNA-binding domain-containing protein [Thalassiosira
pseudonana CCMP1335]
Length = 102
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 49/85 (57%), Gaps = 8/85 (9%)
Query: 9 VRGIVKFYDSKRGFGFITRLDN---KEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGV 65
V G VK++ +K+G+GFIT + EDIFVH+SSI +++L G V+F IG
Sbjct: 5 VLGNVKWFSNKKGYGFITPAEGATVAEDIFVHQSSI----HCDGYRTLDEGWEVEFEIGH 60
Query: 66 GKK-DIEAINVTGPNGIPVQGAPKS 89
++A++VT P G P G KS
Sbjct: 61 DDDGKVKAVSVTAPGGGPCTGVRKS 85
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Query: 110 VRGIVKFYDSKRGFGFITRLDN---KEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGV 166
V G VK++ +K+G+GFIT + EDIFVH+SSI +++L G V+F IG
Sbjct: 5 VLGNVKWFSNKKGYGFITPAEGATVAEDIFVHQSSI----HCDGYRTLDEGWEVEFEIGH 60
Query: 167 GKK-DIEAINVTGPNGIPVQGAPK 189
++A++VT P G P G K
Sbjct: 61 DDDGKVKAVSVTAPGGGPCTGVRK 84
>gi|71892224|ref|YP_277957.1| cold shock-like protein CspC [Candidatus Blochmannia
pennsylvanicus str. BPEN]
gi|440510020|ref|YP_007347456.1| cold shock-like protein CspC [Candidatus Blochmannia chromaiodes
str. 640]
gi|71796330|gb|AAZ41081.1| cold shock-like protein [Candidatus Blochmannia pennsylvanicus
str. BPEN]
gi|440454233|gb|AGC03725.1| cold shock-like protein CspC [Candidatus Blochmannia chromaiodes
str. 640]
Length = 69
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
++G VK+++ +GFGFIT D +D+FVH S+I F++L G+ V+F I G K
Sbjct: 4 IKGQVKWFNESKGFGFITPSDGSKDVFVHFSAIQGNG----FKTLSEGQSVEFEIQDGHK 59
Query: 69 DIEAINVT 76
A+NVT
Sbjct: 60 GPSAVNVT 67
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
++G VK+++ +GFGFIT D +D+FVH S+I F++L G+ V+F I G K
Sbjct: 4 IKGQVKWFNESKGFGFITPSDGSKDVFVHFSAIQGNG----FKTLSEGQSVEFEIQDGHK 59
Query: 170 DIEAINVT 177
A+NVT
Sbjct: 60 GPSAVNVT 67
>gi|226531123|ref|NP_001151606.1| LOC100285240 [Zea mays]
gi|195638850|gb|ACG38893.1| glycine-rich protein 2b [Zea mays]
gi|413919640|gb|AFW59572.1| glycine-rich protein 2b [Zea mays]
Length = 208
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 44/73 (60%), Gaps = 5/73 (6%)
Query: 106 AVHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIG 165
A V G VK+++ +GFGFIT D ED+FVH+SSI ++SL G+ V++ +G
Sbjct: 2 ASDRVLGTVKWFNGTKGFGFITPDDGSEDLFVHQSSI----KSDGYRSLNDGDAVEYTVG 57
Query: 166 VGKK-DIEAINVT 177
G +A++VT
Sbjct: 58 SGNDGRAKALDVT 70
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 5/69 (7%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ +GFGFIT D ED+FVH+SSI ++SL G+ V++ +G G
Sbjct: 6 VLGTVKWFNGTKGFGFITPDDGSEDLFVHQSSI----KSDGYRSLNDGDAVEYTVGSGND 61
Query: 69 -DIEAINVT 76
+A++VT
Sbjct: 62 GRAKALDVT 70
>gi|195609518|gb|ACG26589.1| glycine-rich protein 2b [Zea mays]
Length = 208
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 44/73 (60%), Gaps = 5/73 (6%)
Query: 106 AVHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIG 165
A V G VK+++ +GFGFIT D ED+FVH+SSI ++SL G+ V++ +G
Sbjct: 2 ASDRVLGTVKWFNGTKGFGFITPDDGSEDLFVHQSSI----KSDGYRSLNDGDAVEYTVG 57
Query: 166 VGKK-DIEAINVT 177
G +A++VT
Sbjct: 58 SGNDGRAKALDVT 70
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 5/69 (7%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ +GFGFIT D ED+FVH+SSI ++SL G+ V++ +G G
Sbjct: 6 VLGTVKWFNGTKGFGFITPDDGSEDLFVHQSSI----KSDGYRSLNDGDAVEYTVGSGND 61
Query: 69 -DIEAINVT 76
+A++VT
Sbjct: 62 GRAKALDVT 70
>gi|410478920|ref|YP_006766557.1| cold shock protein [Leptospirillum ferriphilum ML-04]
gi|424869147|ref|ZP_18292867.1| Cold shock protein [Leptospirillum sp. Group II 'C75']
gi|206602877|gb|EDZ39358.1| cold shock protein [Leptospirillum sp. Group II '5-way CG']
gi|387220849|gb|EIJ75465.1| Cold shock protein [Leptospirillum sp. Group II 'C75']
gi|406774172|gb|AFS53597.1| cold shock protein [Leptospirillum ferriphilum ML-04]
Length = 68
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 5/71 (7%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
RG VK++++ +G+GFI++ +N EDIFVH S+I F++L G++V+F I G K
Sbjct: 2 ARGHVKWFNANKGYGFISQ-ENGEDIFVHYSAI----GGSGFKTLEEGQLVEFEIQSGAK 56
Query: 69 DIEAINVTGPN 79
+A NV N
Sbjct: 57 GPQAANVQKVN 67
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 5/71 (7%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
RG VK++++ +G+GFI++ +N EDIFVH S+I F++L G++V+F I G K
Sbjct: 2 ARGHVKWFNANKGYGFISQ-ENGEDIFVHYSAI----GGSGFKTLEEGQLVEFEIQSGAK 56
Query: 170 DIEAINVTGPN 180
+A NV N
Sbjct: 57 GPQAANVQKVN 67
>gi|291395012|ref|XP_002713966.1| PREDICTED: lin-28 homolog [Oryctolagus cuniculus]
Length = 203
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 11/78 (14%)
Query: 11 GIVKFYDSKRGFGFIT-------RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
GI K+++ + GFGF++ LD D+FVH+S + F+SL GE V+F
Sbjct: 36 GICKWFNVRMGFGFLSMTARAGVALDPLVDVFVHQSKLHMEG----FRSLKEGEAVEFTF 91
Query: 64 GVGKKDIEAINVTGPNGI 81
K +E+I VTGP G+
Sbjct: 92 KKSAKGLESIRVTGPGGV 109
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 11/78 (14%)
Query: 112 GIVKFYDSKRGFGFIT-------RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 164
GI K+++ + GFGF++ LD D+FVH+S + F+SL GE V+F
Sbjct: 36 GICKWFNVRMGFGFLSMTARAGVALDPLVDVFVHQSKLHMEG----FRSLKEGEAVEFTF 91
Query: 165 GVGKKDIEAINVTGPNGI 182
K +E+I VTGP G+
Sbjct: 92 KKSAKGLESIRVTGPGGV 109
>gi|170053777|ref|XP_001862831.1| RNA-binding protein lin-28 [Culex quinquefasciatus]
gi|167874140|gb|EDS37523.1| RNA-binding protein lin-28 [Culex quinquefasciatus]
Length = 181
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 46/76 (60%), Gaps = 4/76 (5%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 70
G K+++ +G+GFIT D +D+FVH+ S+++M+ F+SLG E V+F + K
Sbjct: 26 GHCKWFNVIKGWGFITPDDGGQDVFVHQ-SVLQMD---GFRSLGQNEPVEFECKLTDKGY 81
Query: 71 EAINVTGPNGIPVQGA 86
EA V GP+ +G+
Sbjct: 82 EATRVFGPSQTQCKGS 97
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 46/76 (60%), Gaps = 4/76 (5%)
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 171
G K+++ +G+GFIT D +D+FVH+ S+++M+ F+SLG E V+F + K
Sbjct: 26 GHCKWFNVIKGWGFITPDDGGQDVFVHQ-SVLQMD---GFRSLGQNEPVEFECKLTDKGY 81
Query: 172 EAINVTGPNGIPVQGA 187
EA V GP+ +G+
Sbjct: 82 EATRVFGPSQTQCKGS 97
>gi|372280188|ref|ZP_09516224.1| cold-shock DNA-binding domain-containing protein [Oceanicola sp.
S124]
Length = 174
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 74/171 (43%), Gaps = 18/171 (10%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQS-LGLGEIVDFNIGVGKKD 69
G VK++D RGFGF+ + DI +H + + + F QS + G VD + ++
Sbjct: 13 GRVKWFDPARGFGFVVAEEGGPDILLHANVL-----RNFGQSSVADGAQVDILVQRTQRG 67
Query: 70 IEAINVTGPNGIPVQGAPKSSSETVSGTYR--NDSFFPAVHTVRGIVKFYDSKRGFGFIT 127
++AI V P+ + V +R + + A+ VK++D +GFGF
Sbjct: 68 VQAIEVLAI------APPEGAGAAVLEDFRSLDPAEIQALPMEPARVKWFDKVKGFGFAN 121
Query: 128 RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTG 178
ED+F+H V++ L GE V + GK+ A +
Sbjct: 122 VFGRDEDVFIH----VEVLRASGLADLAPGEAVALRVIDGKRGRMATEICA 168
>gi|270264889|ref|ZP_06193153.1| Cold shock-like protein CspJ [Serratia odorifera 4Rx13]
gi|333928900|ref|YP_004502479.1| cold-shock DNA-binding domain-containing protein [Serratia sp.
AS12]
gi|333933853|ref|YP_004507431.1| cold-shock DNA-binding domain-containing protein [Serratia
plymuthica AS9]
gi|386330723|ref|YP_006026893.1| cold-shock protein [Serratia sp. AS13]
gi|386823895|ref|ZP_10111035.1| cold-shock DNA-binding domain-containing protein [Serratia
plymuthica PRI-2C]
gi|421785282|ref|ZP_16221713.1| cold shock-like protein CspJ [Serratia plymuthica A30]
gi|270041187|gb|EFA14287.1| Cold shock-like protein CspJ [Serratia odorifera 4Rx13]
gi|333475460|gb|AEF47170.1| cold-shock DNA-binding domain protein [Serratia plymuthica AS9]
gi|333492960|gb|AEF52122.1| cold-shock DNA-binding domain protein [Serratia sp. AS12]
gi|333963056|gb|AEG29829.1| cold-shock DNA-binding domain protein [Serratia sp. AS13]
gi|386379135|gb|EIJ19932.1| cold-shock DNA-binding domain-containing protein [Serratia
plymuthica PRI-2C]
gi|407752546|gb|EKF62698.1| cold shock-like protein CspJ [Serratia plymuthica A30]
Length = 70
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 44/67 (65%), Gaps = 4/67 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+ G+VK++++ +GFGFIT D +D+FVH S+I + F++L G+ V+F++ G K
Sbjct: 5 MTGLVKWFNADKGFGFITPQDGSKDVFVHFSAIQSSD----FKTLDEGQKVEFSVESGAK 60
Query: 69 DIEAINV 75
A+NV
Sbjct: 61 GPSAVNV 67
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 44/67 (65%), Gaps = 4/67 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+ G+VK++++ +GFGFIT D +D+FVH S+I + F++L G+ V+F++ G K
Sbjct: 5 MTGLVKWFNADKGFGFITPQDGSKDVFVHFSAIQSSD----FKTLDEGQKVEFSVESGAK 60
Query: 170 DIEAINV 176
A+NV
Sbjct: 61 GPSAVNV 67
>gi|159576908|dbj|BAF92769.1| hypothetical protein [Photobacterium phosphoreum]
Length = 70
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 44/69 (63%), Gaps = 4/69 (5%)
Query: 7 HTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVG 66
+T G+VK+++ ++GFGFIT+ + D+FVH +I + F++L G+ V F + G
Sbjct: 3 NTTTGLVKWFNEEKGFGFITQDNGGADVFVHFRAI----ASEGFKTLAEGQKVSFEVEQG 58
Query: 67 KKDIEAINV 75
+K ++A NV
Sbjct: 59 QKGLQAANV 67
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 44/69 (63%), Gaps = 4/69 (5%)
Query: 108 HTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVG 167
+T G+VK+++ ++GFGFIT+ + D+FVH +I + F++L G+ V F + G
Sbjct: 3 NTTTGLVKWFNEEKGFGFITQDNGGADVFVHFRAI----ASEGFKTLAEGQKVSFEVEQG 58
Query: 168 KKDIEAINV 176
+K ++A NV
Sbjct: 59 QKGLQAANV 67
>gi|90581455|ref|ZP_01237249.1| putative Cold shock-like protein [Photobacterium angustum S14]
gi|90437316|gb|EAS62513.1| putative Cold shock-like protein [Photobacterium angustum S14]
Length = 70
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 45/67 (67%), Gaps = 4/67 (5%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 70
G+VK+++ ++GFGF+T+ + D+FVH +I + F++L G+ V F++ G+K +
Sbjct: 7 GLVKWFNEEKGFGFLTQDNGGADVFVHFRAI----ASEGFKTLAEGQKVSFDVEQGQKGL 62
Query: 71 EAINVTG 77
+A+NV G
Sbjct: 63 QAVNVIG 69
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 45/67 (67%), Gaps = 4/67 (5%)
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 171
G+VK+++ ++GFGF+T+ + D+FVH +I + F++L G+ V F++ G+K +
Sbjct: 7 GLVKWFNEEKGFGFLTQDNGGADVFVHFRAI----ASEGFKTLAEGQKVSFDVEQGQKGL 62
Query: 172 EAINVTG 178
+A+NV G
Sbjct: 63 QAVNVIG 69
>gi|188025849|ref|ZP_02960049.2| hypothetical protein PROSTU_01951 [Providencia stuartii ATCC
25827]
gi|188020731|gb|EDU58771.1| cold-shock DNA-binding domain protein [Providencia stuartii ATCC
25827]
Length = 85
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
++G VK+++ +GFGFIT D +D+FVH S+I F++L G+ V+F I G K
Sbjct: 20 MKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGAG----FKTLAEGQQVEFTIENGAK 75
Query: 69 DIEAINVTG 77
A NVT
Sbjct: 76 GPAAANVTA 84
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
++G VK+++ +GFGFIT D +D+FVH S+I F++L G+ V+F I G K
Sbjct: 20 MKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGAG----FKTLAEGQQVEFTIENGAK 75
Query: 170 DIEAINVTG 178
A NVT
Sbjct: 76 GPAAANVTA 84
>gi|89054965|ref|YP_510416.1| cold-shock DNA-binding protein family protein [Jannaschia sp. CCS1]
gi|88864514|gb|ABD55391.1| cold-shock DNA-binding protein family [Jannaschia sp. CCS1]
Length = 181
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 71/164 (43%), Gaps = 28/164 (17%)
Query: 8 TVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGK 67
TV G+VK++D+ +GFGF+ + DI +H + +S G G I + G
Sbjct: 21 TVAGVVKWFDTTKGFGFVLSDEGGPDILLHAN---------VLRSFGRGSIAE-----GA 66
Query: 68 KDIEAINVTGPNGIPVQGAPKSSSETVSGTYRN-DSFFP------AVHTVRGIVKFYDSK 120
+ + TG +Q + E V G + D P V V VK++D
Sbjct: 67 RVMLRTQATGRG---LQAVEIIAIEAVVGEPTDPDRPIPDMPDATDVPLVAARVKWFDKA 123
Query: 121 RGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 164
+GFGF + ED+FVH V++ + F L GE V +
Sbjct: 124 KGFGFANVFGHSEDVFVH----VEVLRRSGFTELQPGEAVAMKV 163
>gi|238790450|ref|ZP_04634220.1| Cold shock-like protein cspE [Yersinia frederiksenii ATCC 33641]
gi|238721476|gb|EEQ13146.1| Cold shock-like protein cspE [Yersinia frederiksenii ATCC 33641]
Length = 69
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 4/67 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
++G VK+++ +GFGFIT D +D+FVH S+I F++L G+ V+F I G K
Sbjct: 4 IKGSVKWFNEAKGFGFITPEDGSKDVFVHFSAIASNG----FKTLAEGQRVEFEITTGAK 59
Query: 69 DIEAINV 75
A NV
Sbjct: 60 GPSAANV 66
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 4/67 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
++G VK+++ +GFGFIT D +D+FVH S+I F++L G+ V+F I G K
Sbjct: 4 IKGSVKWFNEAKGFGFITPEDGSKDVFVHFSAIASNG----FKTLAEGQRVEFEITTGAK 59
Query: 170 DIEAINV 176
A NV
Sbjct: 60 GPSAANV 66
>gi|206896315|ref|YP_002247470.1| hypothetical protein COPRO5265_1162 [Coprothermobacter
proteolyticus DSM 5265]
gi|206738932|gb|ACI18010.1| conserved domain protein [Coprothermobacter proteolyticus DSM
5265]
Length = 84
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 4/65 (6%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 70
G VK++D+++G+GFITR D + D+FVH S+I F++L GE V+F + G K
Sbjct: 21 GTVKWFDAQKGYGFITRDDGEGDVFVHFSAI----EGDGFKTLNEGEKVEFEVSRGAKGP 76
Query: 71 EAINV 75
+A +V
Sbjct: 77 QAAHV 81
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 4/65 (6%)
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 171
G VK++D+++G+GFITR D + D+FVH S+I F++L GE V+F + G K
Sbjct: 21 GTVKWFDAQKGYGFITRDDGEGDVFVHFSAI----EGDGFKTLNEGEKVEFEVSRGAKGP 76
Query: 172 EAINV 176
+A +V
Sbjct: 77 QAAHV 81
>gi|332283953|ref|YP_004415864.1| cold-shock protein [Pusillimonas sp. T7-7]
gi|330427906|gb|AEC19240.1| cold-shock protein [Pusillimonas sp. T7-7]
Length = 80
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 4/72 (5%)
Query: 5 EIHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIG 64
+ + G VK+++ +GFGFIT + ED+F H SSI +MN F++L G+ V F I
Sbjct: 11 DTEKLTGTVKWFNDAKGFGFITPDNGGEDLFAHFSSI-QMNG---FKTLKEGQKVAFEIA 66
Query: 65 VGKKDIEAINVT 76
G K +A+N+T
Sbjct: 67 QGPKGKQALNIT 78
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 43/68 (63%), Gaps = 4/68 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+ G VK+++ +GFGFIT + ED+F H SSI +MN F++L G+ V F I G K
Sbjct: 15 LTGTVKWFNDAKGFGFITPDNGGEDLFAHFSSI-QMNG---FKTLKEGQKVAFEIAQGPK 70
Query: 170 DIEAINVT 177
+A+N+T
Sbjct: 71 GKQALNIT 78
>gi|45441597|ref|NP_993136.1| cold shock protein [Yersinia pestis biovar Microtus str. 91001]
gi|51596736|ref|YP_070927.1| cold shock protein [Yersinia pseudotuberculosis IP 32953]
gi|108807860|ref|YP_651776.1| cold shock protein [Yersinia pestis Antiqua]
gi|108812136|ref|YP_647903.1| cold shock protein [Yersinia pestis Nepal516]
gi|123442814|ref|YP_001008382.1| cold shock-like protein CspC2 [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|145599073|ref|YP_001163149.1| cold shock protein [Yersinia pestis Pestoides F]
gi|149366382|ref|ZP_01888416.1| cold shock protein [Yersinia pestis CA88-4125]
gi|165925512|ref|ZP_02221344.1| conserved domain protein [Yersinia pestis biovar Orientalis str.
F1991016]
gi|165938445|ref|ZP_02227002.1| conserved domain protein [Yersinia pestis biovar Orientalis str.
IP275]
gi|166008118|ref|ZP_02229016.1| conserved domain protein [Yersinia pestis biovar Antiqua str.
E1979001]
gi|166210711|ref|ZP_02236746.1| conserved domain protein [Yersinia pestis biovar Antiqua str.
B42003004]
gi|167422600|ref|ZP_02314353.1| conserved domain protein [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|167426330|ref|ZP_02318083.1| conserved domain protein [Yersinia pestis biovar Mediaevalis str.
K1973002]
gi|167466596|ref|ZP_02331300.1| cold shock protein [Yersinia pestis FV-1]
gi|170023981|ref|YP_001720486.1| cold-shock DNA-binding domain-containing protein [Yersinia
pseudotuberculosis YPIII]
gi|186895799|ref|YP_001872911.1| cold-shock DNA-binding domain-containing protein [Yersinia
pseudotuberculosis PB1/+]
gi|218928790|ref|YP_002346665.1| cold shock protein [Yersinia pestis CO92]
gi|229841646|ref|ZP_04461804.1| cold shock protein [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229843763|ref|ZP_04463906.1| cold shock protein [Yersinia pestis biovar Orientalis str. India
195]
gi|229894506|ref|ZP_04509688.1| cold shock protein [Yersinia pestis Pestoides A]
gi|229902455|ref|ZP_04517574.1| cold shock protein [Yersinia pestis Nepal516]
gi|257168075|ref|YP_003169743.1| cold shock protein [Yersinia pestis KIM10+]
gi|270490364|ref|ZP_06207438.1| transcriptional repressor activity CueR [Yersinia pestis KIM D27]
gi|284988615|ref|YP_003422336.1| cold shock protein [Yersinia pseudotuberculosis IP 31758]
gi|332161292|ref|YP_004297869.1| cold shock-like protein CspC2 [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|384140455|ref|YP_005523157.1| cold shock-like protein CspC2 [Yersinia pestis A1122]
gi|384414299|ref|YP_005623661.1| cold shock protein [Yersinia pestis biovar Medievalis str. Harbin
35]
gi|386308922|ref|YP_006004978.1| cold shock protein CspA [Yersinia enterocolitica subsp.
palearctica Y11]
gi|418242821|ref|ZP_12869323.1| cold shock-like protein CspC2 [Yersinia enterocolitica subsp.
palearctica PhRBD_Ye1]
gi|420258086|ref|ZP_14760826.1| cold shock protein CspA [Yersinia enterocolitica subsp.
enterocolitica WA-314]
gi|420546398|ref|ZP_15044390.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-01]
gi|420551738|ref|ZP_15049166.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-02]
gi|420557289|ref|ZP_15054057.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-03]
gi|420562828|ref|ZP_15058938.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-04]
gi|420567837|ref|ZP_15063478.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-05]
gi|420573534|ref|ZP_15068642.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-06]
gi|420578794|ref|ZP_15073411.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-07]
gi|420584180|ref|ZP_15078304.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-08]
gi|420589344|ref|ZP_15082952.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-09]
gi|420594657|ref|ZP_15087735.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-10]
gi|420600348|ref|ZP_15092819.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-11]
gi|420605805|ref|ZP_15097710.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-12]
gi|420611161|ref|ZP_15102547.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-13]
gi|420616488|ref|ZP_15107246.1| 'Cold-shock' DNA-binding domain protein [Yersinia pestis PY-14]
gi|420621871|ref|ZP_15112015.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-15]
gi|420626911|ref|ZP_15116586.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-16]
gi|420632113|ref|ZP_15121277.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-19]
gi|420637229|ref|ZP_15125864.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-25]
gi|420642745|ref|ZP_15130860.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-29]
gi|420647964|ref|ZP_15135618.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-32]
gi|420653562|ref|ZP_15140645.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-34]
gi|420659122|ref|ZP_15145644.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-36]
gi|420664403|ref|ZP_15150369.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-42]
gi|420669358|ref|ZP_15154867.1| 'Cold-shock' DNA-binding domain protein [Yersinia pestis PY-45]
gi|420674697|ref|ZP_15159727.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-46]
gi|420680252|ref|ZP_15164755.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-47]
gi|420685527|ref|ZP_15169475.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-48]
gi|420690707|ref|ZP_15174055.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-52]
gi|420696505|ref|ZP_15179131.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-53]
gi|420701999|ref|ZP_15183747.1| 'Cold-shock' DNA-binding domain protein [Yersinia pestis PY-54]
gi|420707821|ref|ZP_15188577.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-55]
gi|420713202|ref|ZP_15193401.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-56]
gi|420718627|ref|ZP_15198140.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-58]
gi|420724190|ref|ZP_15202947.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-59]
gi|420729794|ref|ZP_15207962.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-60]
gi|420734842|ref|ZP_15212524.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-61]
gi|420740306|ref|ZP_15217445.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-63]
gi|420745781|ref|ZP_15222198.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-64]
gi|420751452|ref|ZP_15227110.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-65]
gi|420756851|ref|ZP_15231702.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-66]
gi|420762578|ref|ZP_15236460.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-71]
gi|420767828|ref|ZP_15241195.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-72]
gi|420772802|ref|ZP_15245669.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-76]
gi|420778259|ref|ZP_15250522.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-88]
gi|420783805|ref|ZP_15255377.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-89]
gi|420789089|ref|ZP_15260061.1| 'Cold-shock' DNA-binding domain protein [Yersinia pestis PY-90]
gi|420794569|ref|ZP_15265002.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-91]
gi|420799684|ref|ZP_15269601.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-92]
gi|420805031|ref|ZP_15274420.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-93]
gi|420810309|ref|ZP_15279186.1| 'Cold-shock' DNA-binding domain protein [Yersinia pestis PY-94]
gi|420815977|ref|ZP_15284279.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-95]
gi|420821180|ref|ZP_15288976.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-96]
gi|420826268|ref|ZP_15293533.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-98]
gi|420832015|ref|ZP_15298729.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-99]
gi|420836861|ref|ZP_15303100.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-100]
gi|420842018|ref|ZP_15307773.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-101]
gi|420847658|ref|ZP_15312857.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-102]
gi|420853105|ref|ZP_15317606.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-103]
gi|420858583|ref|ZP_15322306.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-113]
gi|421763123|ref|ZP_16199920.1| cold shock protein CspA [Yersinia pestis INS]
gi|433548550|ref|ZP_20504600.1| Cold shock protein CspC [Yersinia enterocolitica IP 10393]
gi|45436458|gb|AAS62013.1| cold shock protein [Yersinia pestis biovar Microtus str. 91001]
gi|51590018|emb|CAH21652.1| cold shock protein [Yersinia pseudotuberculosis IP 32953]
gi|108775784|gb|ABG18303.1| cold-shock DNA-binding protein family [Yersinia pestis Nepal516]
gi|108779773|gb|ABG13831.1| cold-shock DNA-binding protein family [Yersinia pestis Antiqua]
gi|115347401|emb|CAL20300.1| cold shock protein [Yersinia pestis CO92]
gi|122089775|emb|CAL12628.1| cold shock-like protein CspC2 [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|145210769|gb|ABP40176.1| cold-shock DNA-binding protein family [Yersinia pestis Pestoides
F]
gi|149290756|gb|EDM40831.1| cold shock protein [Yersinia pestis CA88-4125]
gi|165913560|gb|EDR32180.1| conserved domain protein [Yersinia pestis biovar Orientalis str.
IP275]
gi|165922621|gb|EDR39772.1| conserved domain protein [Yersinia pestis biovar Orientalis str.
F1991016]
gi|165992500|gb|EDR44801.1| conserved domain protein [Yersinia pestis biovar Antiqua str.
E1979001]
gi|166207891|gb|EDR52371.1| conserved domain protein [Yersinia pestis biovar Antiqua str.
B42003004]
gi|166958447|gb|EDR55468.1| conserved domain protein [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|167054685|gb|EDR64489.1| conserved domain protein [Yersinia pestis biovar Mediaevalis str.
K1973002]
gi|169750515|gb|ACA68033.1| cold-shock DNA-binding domain protein [Yersinia
pseudotuberculosis YPIII]
gi|186698825|gb|ACC89454.1| cold-shock DNA-binding domain protein [Yersinia
pseudotuberculosis PB1/+]
gi|229680501|gb|EEO76598.1| cold shock protein [Yersinia pestis Nepal516]
gi|229689371|gb|EEO81434.1| cold shock protein [Yersinia pestis biovar Orientalis str. India
195]
gi|229694109|gb|EEO84157.1| cold shock protein [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229703525|gb|EEO90542.1| cold shock protein [Yersinia pestis Pestoides A]
gi|270338868|gb|EFA49645.1| transcriptional repressor activity CueR [Yersinia pestis KIM D27]
gi|318605204|emb|CBY26702.1| cold shock protein CspA [Yersinia enterocolitica subsp.
palearctica Y11]
gi|320014803|gb|ADV98374.1| cold shock protein [Yersinia pestis biovar Medievalis str. Harbin
35]
gi|325665522|gb|ADZ42166.1| cold shock-like protein CspC2 [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|330860359|emb|CBX70670.1| cold shock-like protein cspC [Yersinia enterocolitica W22703]
gi|342855584|gb|AEL74137.1| cold shock-like protein CspC2 [Yersinia pestis A1122]
gi|351777742|gb|EHB19938.1| cold shock-like protein CspC2 [Yersinia enterocolitica subsp.
palearctica PhRBD_Ye1]
gi|391427857|gb|EIQ89897.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-01]
gi|391429357|gb|EIQ91219.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-02]
gi|391430698|gb|EIQ92379.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-03]
gi|391443371|gb|EIR03692.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-04]
gi|391444780|gb|EIR04971.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-05]
gi|391447634|gb|EIR07526.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-06]
gi|391460330|gb|EIR19045.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-07]
gi|391461280|gb|EIR19898.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-08]
gi|391463243|gb|EIR21667.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-09]
gi|391476319|gb|EIR33450.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-10]
gi|391478113|gb|EIR35069.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-11]
gi|391478250|gb|EIR35189.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-12]
gi|391492282|gb|EIR47765.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-13]
gi|391493118|gb|EIR48499.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-15]
gi|391495533|gb|EIR50618.1| 'Cold-shock' DNA-binding domain protein [Yersinia pestis PY-14]
gi|391508119|gb|EIR61892.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-16]
gi|391508254|gb|EIR62011.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-19]
gi|391513110|gb|EIR66365.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-25]
gi|391523529|gb|EIR75833.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-29]
gi|391526238|gb|EIR78289.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-34]
gi|391527020|gb|EIR78982.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-32]
gi|391539272|gb|EIR90009.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-36]
gi|391541919|gb|EIR92428.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-42]
gi|391543117|gb|EIR93479.1| 'Cold-shock' DNA-binding domain protein [Yersinia pestis PY-45]
gi|391556961|gb|EIS06000.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-46]
gi|391557425|gb|EIS06420.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-47]
gi|391558732|gb|EIS07589.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-48]
gi|391572302|gb|EIS19549.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-52]
gi|391572819|gb|EIS19994.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-53]
gi|391582369|gb|EIS28131.1| 'Cold-shock' DNA-binding domain protein [Yersinia pestis PY-54]
gi|391584732|gb|EIS30222.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-55]
gi|391587985|gb|EIS33077.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-56]
gi|391600978|gb|EIS44445.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-58]
gi|391601578|gb|EIS44990.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-60]
gi|391603226|gb|EIS46436.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-59]
gi|391615982|gb|EIS57697.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-61]
gi|391616737|gb|EIS58358.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-63]
gi|391622416|gb|EIS63341.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-64]
gi|391627937|gb|EIS68087.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-65]
gi|391639148|gb|EIS77873.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-71]
gi|391639421|gb|EIS78104.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-66]
gi|391641419|gb|EIS79835.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-72]
gi|391651248|gb|EIS88446.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-76]
gi|391656483|gb|EIS93116.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-88]
gi|391660960|gb|EIS97059.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-89]
gi|391664412|gb|EIT00143.1| 'Cold-shock' DNA-binding domain protein [Yersinia pestis PY-90]
gi|391671286|gb|EIT06247.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-91]
gi|391682082|gb|EIT15991.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-93]
gi|391683500|gb|EIT17267.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-92]
gi|391684295|gb|EIT17988.1| 'Cold-shock' DNA-binding domain protein [Yersinia pestis PY-94]
gi|391695916|gb|EIT28451.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-95]
gi|391699299|gb|EIT31506.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-96]
gi|391700748|gb|EIT32822.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-98]
gi|391709796|gb|EIT40937.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-99]
gi|391716730|gb|EIT47160.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-100]
gi|391717421|gb|EIT47786.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-101]
gi|391728249|gb|EIT57381.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-102]
gi|391731016|gb|EIT59768.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-103]
gi|391735642|gb|EIT63761.1| RNA chaperone, negative regulator of cspA transcription [Yersinia
pestis PY-113]
gi|404514395|gb|EKA28190.1| cold shock protein CspA [Yersinia enterocolitica subsp.
enterocolitica WA-314]
gi|411177329|gb|EKS47344.1| cold shock protein CspA [Yersinia pestis INS]
gi|431791110|emb|CCO67640.1| Cold shock protein CspC [Yersinia enterocolitica IP 10393]
Length = 70
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 7 HTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVG 66
+ ++G VK+++ +GFGFIT D +D+FVH S+I + F++L G+ V F+I G
Sbjct: 3 NMMKGQVKWFNESKGFGFITPADGSKDVFVHFSAI----QDQGFKTLAEGQNVQFSIENG 58
Query: 67 KKDIEAINVTG 77
K A NVT
Sbjct: 59 AKGPSAANVTA 69
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 108 HTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVG 167
+ ++G VK+++ +GFGFIT D +D+FVH S+I + F++L G+ V F+I G
Sbjct: 3 NMMKGQVKWFNESKGFGFITPADGSKDVFVHFSAI----QDQGFKTLAEGQNVQFSIENG 58
Query: 168 KKDIEAINVTG 178
K A NVT
Sbjct: 59 AKGPSAANVTA 69
>gi|226330479|ref|ZP_03805997.1| hypothetical protein PROPEN_04397 [Proteus penneri ATCC 35198]
gi|225201274|gb|EEG83628.1| cold-shock DNA-binding domain protein [Proteus penneri ATCC
35198]
Length = 70
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 7 HTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVG 66
+T+ G VK++D +GFGFIT D +D+FVH S+I N F++L G+ V F + G
Sbjct: 3 NTMTGTVKWFDEGKGFGFITPADGSKDVFVHFSAIQSDN----FKTLAEGQQVSFTMENG 58
Query: 67 KKDIEAINV 75
K A NV
Sbjct: 59 MKGPAAGNV 67
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 108 HTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVG 167
+T+ G VK++D +GFGFIT D +D+FVH S+I N F++L G+ V F + G
Sbjct: 3 NTMTGTVKWFDEGKGFGFITPADGSKDVFVHFSAIQSDN----FKTLAEGQQVSFTMENG 58
Query: 168 KKDIEAINV 176
K A NV
Sbjct: 59 MKGPAAGNV 67
>gi|425072875|ref|ZP_18475981.1| cold shock protein CspA [Proteus mirabilis WGLW4]
gi|404596649|gb|EKA97169.1| cold shock protein CspA [Proteus mirabilis WGLW4]
Length = 70
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 7 HTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVG 66
+T+ G VK++D +GFGFIT D +D+FVH S+I N F++L G+ V F + G
Sbjct: 3 NTMTGTVKWFDEGKGFGFITPADGSKDVFVHFSAIQSDN----FKTLAEGQQVSFTMENG 58
Query: 67 KKDIEAINV 75
K A NV
Sbjct: 59 MKGPAAGNV 67
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 108 HTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVG 167
+T+ G VK++D +GFGFIT D +D+FVH S+I N F++L G+ V F + G
Sbjct: 3 NTMTGTVKWFDEGKGFGFITPADGSKDVFVHFSAIQSDN----FKTLAEGQQVSFTMENG 58
Query: 168 KKDIEAINV 176
K A NV
Sbjct: 59 MKGPAAGNV 67
>gi|359792207|ref|ZP_09295028.1| Cold-shock protein DNA-binding protein [Mesorhizobium alhagi
CCNWXJ12-2]
gi|359251732|gb|EHK55065.1| Cold-shock protein DNA-binding protein [Mesorhizobium alhagi
CCNWXJ12-2]
Length = 191
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 75/169 (44%), Gaps = 14/169 (8%)
Query: 9 VRGIVKFYDSKRGFGFITRLDN-KEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGK 67
+ G +K++D +G+GFI D D+ +H + + F +L +V + G+
Sbjct: 25 ISGAIKWFDVAKGYGFILPDDGVSGDVLLH---VTCLRRDGFHTALEGARVVCL-VKKGE 80
Query: 68 KDIEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFIT 127
+ ++A V + + + +S R +VK+++ +GFGF+T
Sbjct: 81 RGMQAFRVISMDSSTAVHPAEMQEQRTHVAVTAESGLE-----RALVKWFNRTKGFGFLT 135
Query: 128 RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINV 176
R + EDIFVH ++ + L G++V G G+K + A +
Sbjct: 136 RGEGTEDIFVHMETLRRYG----LTELRPGQVVLVRFGRGEKGLMAAEI 180
>gi|336430260|ref|ZP_08610214.1| cold shock protein 1 [Lachnospiraceae bacterium 3_1_57FAA_CT1]
gi|336000564|gb|EGN30713.1| cold shock protein 1 [Lachnospiraceae bacterium 3_1_57FAA_CT1]
Length = 70
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 7/68 (10%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD- 69
G VK++++++G+GFIT DN ED+FVH SSI F++L G+ V F+ +D
Sbjct: 4 GTVKWFNAEKGYGFITNADNGEDVFVHYSSI----QTDGFKTLQEGQAVTFDTEADPRDS 59
Query: 70 --IEAINV 75
+ A+NV
Sbjct: 60 KKVRAVNV 67
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 7/68 (10%)
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD- 170
G VK++++++G+GFIT DN ED+FVH SSI F++L G+ V F+ +D
Sbjct: 4 GTVKWFNAEKGYGFITNADNGEDVFVHYSSI----QTDGFKTLQEGQAVTFDTEADPRDS 59
Query: 171 --IEAINV 176
+ A+NV
Sbjct: 60 KKVRAVNV 67
>gi|213966043|ref|ZP_03394232.1| conserved domain protein [Corynebacterium amycolatum SK46]
gi|213951338|gb|EEB62731.1| conserved domain protein [Corynebacterium amycolatum SK46]
Length = 67
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 4/67 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+G VK+++S++GFGFI D D+FVH S I F++L + V+F IG G+K
Sbjct: 2 AQGTVKWFNSEKGFGFIAPADGGNDVFVHYSEIQGTG----FKTLEENQAVEFEIGEGQK 57
Query: 69 DIEAINV 75
+A++V
Sbjct: 58 GPQALDV 64
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 4/67 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+G VK+++S++GFGFI D D+FVH S I F++L + V+F IG G+K
Sbjct: 2 AQGTVKWFNSEKGFGFIAPADGGNDVFVHYSEIQGTG----FKTLEENQAVEFEIGEGQK 57
Query: 170 DIEAINV 176
+A++V
Sbjct: 58 GPQALDV 64
>gi|444732743|gb|ELW73018.1| B box-binding protein [Tupaia chinensis]
Length = 196
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 36/59 (61%)
Query: 1 MTKFEIHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIV 59
+ K V G VK ++ + +GFI R D KED+F ++++I K NP+K +S G GE V
Sbjct: 41 LQKVMARKVLGTVKRFNVRNRYGFINRNDTKEDVFAYQTTIKKNNPRKCLRSAGDGETV 99
Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 34/51 (66%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIV 160
V G VK ++ + +GFI R D KED+F ++++I K NP+K +S G GE V
Sbjct: 49 VLGTVKRFNVRNRYGFINRNDTKEDVFAYQTTIKKNNPRKCLRSAGDGETV 99
>gi|418965695|ref|ZP_13517457.1| cold-shock DNA-binding domain protein [Streptococcus constellatus
subsp. constellatus SK53]
gi|419777427|ref|ZP_14303339.1| cold-shock DNA-binding domain protein [Streptococcus intermedius
SK54]
gi|423068970|ref|ZP_17057758.1| major cold shock protein [Streptococcus intermedius F0395]
gi|423070765|ref|ZP_17059541.1| major cold shock protein [Streptococcus intermedius F0413]
gi|424787346|ref|ZP_18214114.1| cold shock protein CspC [Streptococcus intermedius BA1]
gi|355365321|gb|EHG13045.1| major cold shock protein [Streptococcus intermedius F0413]
gi|355365370|gb|EHG13093.1| major cold shock protein [Streptococcus intermedius F0395]
gi|383341798|gb|EID20045.1| cold-shock DNA-binding domain protein [Streptococcus constellatus
subsp. constellatus SK53]
gi|383844907|gb|EID82317.1| cold-shock DNA-binding domain protein [Streptococcus intermedius
SK54]
gi|422114109|gb|EKU17827.1| cold shock protein CspC [Streptococcus intermedius BA1]
Length = 67
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 46/68 (67%), Gaps = 5/68 (7%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+G VK++++++G+GFI++ DN D+F H S+I F+SL G+ V FNI G++
Sbjct: 2 TQGTVKWFNAEKGYGFISQ-DNGPDVFAHFSAI----QSDGFKSLNEGDKVMFNIEEGQR 56
Query: 69 DIEAINVT 76
++A+N+T
Sbjct: 57 GLQAVNIT 64
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 46/68 (67%), Gaps = 5/68 (7%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+G VK++++++G+GFI++ DN D+F H S+I F+SL G+ V FNI G++
Sbjct: 2 TQGTVKWFNAEKGYGFISQ-DNGPDVFAHFSAI----QSDGFKSLNEGDKVMFNIEEGQR 56
Query: 170 DIEAINVT 177
++A+N+T
Sbjct: 57 GLQAVNIT 64
>gi|399218431|emb|CCF75318.1| unnamed protein product [Babesia microti strain RI]
Length = 111
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 57/109 (52%), Gaps = 19/109 (17%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+ G K+++S +G+GFIT L+ ED+FVH+S I + F+SL E V+ +
Sbjct: 4 LSGKCKWFNSIKGYGFIT-LETGEDVFVHQSEIHAVG----FRSLAENEPVELEVINEDN 58
Query: 69 DIEAINVTGPNGIPVQGA----------PKS----SSETVSGTYRNDSF 103
+A+ VTGP G V+GA P+S S G+YRN+ +
Sbjct: 59 RKKAVKVTGPKGDYVKGADDTRYNDGFNPRSSGYRSGNGSGGSYRNNDY 107
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 5/78 (6%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+ G K+++S +G+GFIT L+ ED+FVH+S I + F+SL E V+ +
Sbjct: 4 LSGKCKWFNSIKGYGFIT-LETGEDVFVHQSEIHAVG----FRSLAENEPVELEVINEDN 58
Query: 170 DIEAINVTGPNGIPVQGA 187
+A+ VTGP G V+GA
Sbjct: 59 RKKAVKVTGPKGDYVKGA 76
>gi|300676082|gb|ADK26463.1| lin-28 [Sus scrofa]
Length = 205
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 53/114 (46%), Gaps = 12/114 (10%)
Query: 85 GAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFIT-------RLDNKEDIFV 137
G K+ E R +H GI K+++ + GFGF++ LD D+ V
Sbjct: 12 GCAKAPEEAPEDAARAAEEPQLLHGA-GICKWFNVRMGFGFLSMTARAGVALDPPVDVLV 70
Query: 138 HKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGAPKVP 191
H+S + F+SL GE V+F K +E+I VTGP G+ G+ + P
Sbjct: 71 HQSKLHMEG----FRSLKEGEAVEFTFKKSAKGLESIRVTGPGGVFCIGSERRP 120
Score = 48.9 bits (115), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 11/78 (14%)
Query: 11 GIVKFYDSKRGFGFIT-------RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
GI K+++ + GFGF++ LD D+ VH+S + F+SL GE V+F
Sbjct: 38 GICKWFNVRMGFGFLSMTARAGVALDPPVDVLVHQSKLHMEG----FRSLKEGEAVEFTF 93
Query: 64 GVGKKDIEAINVTGPNGI 81
K +E+I VTGP G+
Sbjct: 94 KKSAKGLESIRVTGPGGV 111
>gi|433022447|ref|ZP_20210463.1| cold shock-like protein CspE [Escherichia coli KTE106]
gi|431540130|gb|ELI15759.1| cold shock-like protein CspE [Escherichia coli KTE106]
Length = 69
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 4/70 (5%)
Query: 6 IHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGV 65
+ ++G VK+++ +GFGFIT D +D+FVH S+I F++L G+ V+F I
Sbjct: 1 MSKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNG----FKTLAEGQRVEFEITN 56
Query: 66 GKKDIEAINV 75
G KD A NV
Sbjct: 57 GAKDPSAANV 66
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 4/67 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
++G VK+++ +GFGFIT D +D+FVH S+I F++L G+ V+F I G K
Sbjct: 4 IKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNG----FKTLAEGQRVEFEITNGAK 59
Query: 170 DIEAINV 176
D A NV
Sbjct: 60 DPSAANV 66
>gi|33593717|ref|NP_881361.1| cold-shock protein [Bordetella pertussis Tohama I]
gi|33597156|ref|NP_884799.1| cold-shock protein [Bordetella parapertussis 12822]
gi|33601000|ref|NP_888560.1| cold-shock protein [Bordetella bronchiseptica RB50]
gi|384205006|ref|YP_005590745.1| putative cold-shock protein [Bordetella pertussis CS]
gi|408414683|ref|YP_006625390.1| cold-shock protein [Bordetella pertussis 18323]
gi|410420801|ref|YP_006901250.1| cold-shock protein [Bordetella bronchiseptica MO149]
gi|410472561|ref|YP_006895842.1| cold-shock protein [Bordetella parapertussis Bpp5]
gi|412338815|ref|YP_006967570.1| cold-shock protein [Bordetella bronchiseptica 253]
gi|427815295|ref|ZP_18982359.1| putative cold-shock protein [Bordetella bronchiseptica 1289]
gi|427819567|ref|ZP_18986630.1| putative cold-shock protein [Bordetella bronchiseptica D445]
gi|427824963|ref|ZP_18992025.1| putative cold-shock protein [Bordetella bronchiseptica Bbr77]
gi|33563790|emb|CAE43032.1| putative cold-shock protein [Bordetella pertussis Tohama I]
gi|33566607|emb|CAE37865.1| putative cold-shock protein [Bordetella parapertussis]
gi|33575435|emb|CAE32513.1| putative cold-shock protein [Bordetella bronchiseptica RB50]
gi|332383120|gb|AEE67967.1| putative cold-shock protein [Bordetella pertussis CS]
gi|401776853|emb|CCJ62095.1| putative cold-shock protein [Bordetella pertussis 18323]
gi|408442671|emb|CCJ49229.1| putative cold-shock protein [Bordetella parapertussis Bpp5]
gi|408448096|emb|CCJ59775.1| putative cold-shock protein [Bordetella bronchiseptica MO149]
gi|408768649|emb|CCJ53417.1| putative cold-shock protein [Bordetella bronchiseptica 253]
gi|410566295|emb|CCN23856.1| putative cold-shock protein [Bordetella bronchiseptica 1289]
gi|410570567|emb|CCN18753.1| putative cold-shock protein [Bordetella bronchiseptica D445]
gi|410590228|emb|CCN05310.1| putative cold-shock protein [Bordetella bronchiseptica Bbr77]
Length = 81
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
G VK+++ +GFGFIT D ED+F H SSI +MN F++L G+ V F I G K
Sbjct: 16 ATGTVKWFNDAKGFGFITPDDGGEDLFAHFSSI-QMNG---FKTLKEGQKVSFEIIQGPK 71
Query: 69 DIEAINVT 76
+A+N+T
Sbjct: 72 GKQALNIT 79
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
G VK+++ +GFGFIT D ED+F H SSI +MN F++L G+ V F I G K
Sbjct: 16 ATGTVKWFNDAKGFGFITPDDGGEDLFAHFSSI-QMNG---FKTLKEGQKVSFEIIQGPK 71
Query: 170 DIEAINVT 177
+A+N+T
Sbjct: 72 GKQALNIT 79
>gi|30249291|ref|NP_841361.1| cold shock DNA-binding domain-containing protein [Nitrosomonas
europaea ATCC 19718]
gi|30180610|emb|CAD85223.1| Cold-shock DNA-binding domain [Nitrosomonas europaea ATCC 19718]
Length = 67
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 70
G VK+++ +GFGFIT D ED+F H S+I MN F++L G+ V F++ G+K
Sbjct: 4 GTVKWFNDAKGFGFITPDDGSEDLFAHFSAI-NMNG---FKTLREGQKVSFDVTQGQKGK 59
Query: 71 EAINVTGP 78
+A N+ P
Sbjct: 60 QASNIQAP 67
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 171
G VK+++ +GFGFIT D ED+F H S+I MN F++L G+ V F++ G+K
Sbjct: 4 GTVKWFNDAKGFGFITPDDGSEDLFAHFSAI-NMNG---FKTLREGQKVSFDVTQGQKGK 59
Query: 172 EAINVTGP 179
+A N+ P
Sbjct: 60 QASNIQAP 67
>gi|354724790|ref|ZP_09039005.1| cold-shock DNA-binding protein [Enterobacter mori LMG 25706]
Length = 67
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 41/66 (62%), Gaps = 4/66 (6%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 70
G+VK+++ +GFGFI+ LD +DIFVH S++ N K F+ G+ V+F I G K
Sbjct: 2 GLVKWFNEDKGFGFISPLDGSKDIFVHLSALNGDNFKTLFE----GQKVEFAIHRGDKGP 57
Query: 71 EAINVT 76
A NVT
Sbjct: 58 AAANVT 63
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 41/66 (62%), Gaps = 4/66 (6%)
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 171
G+VK+++ +GFGFI+ LD +DIFVH S++ N K F+ G+ V+F I G K
Sbjct: 2 GLVKWFNEDKGFGFISPLDGSKDIFVHLSALNGDNFKTLFE----GQKVEFAIHRGDKGP 57
Query: 172 EAINVT 177
A NVT
Sbjct: 58 AAANVT 63
>gi|188025725|ref|ZP_02959593.2| hypothetical protein PROSTU_01464 [Providencia stuartii ATCC
25827]
gi|188020258|gb|EDU58298.1| cold-shock DNA-binding domain protein [Providencia stuartii ATCC
25827]
Length = 81
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 4/70 (5%)
Query: 6 IHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGV 65
+ V+G VK+++ +GFGFIT D +D+FVH S+I F++L G+ V+F I
Sbjct: 13 MSKVKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIASEG----FKTLAEGQKVEFEITE 68
Query: 66 GKKDIEAINV 75
G K A+NV
Sbjct: 69 GAKGPSAVNV 78
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 4/67 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V+G VK+++ +GFGFIT D +D+FVH S+I F++L G+ V+F I G K
Sbjct: 16 VKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIASEG----FKTLAEGQKVEFEITEGAK 71
Query: 170 DIEAINV 176
A+NV
Sbjct: 72 GPSAVNV 78
>gi|406892234|gb|EKD37642.1| hypothetical protein ACD_75C01056G0003 [uncultured bacterium]
Length = 71
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 44/68 (64%), Gaps = 4/68 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V+G VK++++ +G+GF+ R D + D+FVH S+I + F+SL G+ V+F I K
Sbjct: 5 VQGKVKWFNASKGYGFLERPDGESDVFVHYSAI----QGEGFRSLEEGDAVEFTIAKTDK 60
Query: 69 DIEAINVT 76
++A NV+
Sbjct: 61 GLQAENVS 68
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 44/68 (64%), Gaps = 4/68 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V+G VK++++ +G+GF+ R D + D+FVH S+I + F+SL G+ V+F I K
Sbjct: 5 VQGKVKWFNASKGYGFLERPDGESDVFVHYSAI----QGEGFRSLEEGDAVEFTIAKTDK 60
Query: 170 DIEAINVT 177
++A NV+
Sbjct: 61 GLQAENVS 68
>gi|422022060|ref|ZP_16368569.1| cold shock protein CspE [Providencia sneebia DSM 19967]
gi|414097810|gb|EKT59463.1| cold shock protein CspE [Providencia sneebia DSM 19967]
Length = 69
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 4/70 (5%)
Query: 6 IHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGV 65
+ V+G VK+++ +GFGFIT D +D+FVH S+I F++L G+ V+F I
Sbjct: 1 MSKVKGNVKWFNESKGFGFITPEDGSKDVFVHFSAITSDG----FKTLAEGQKVEFEITE 56
Query: 66 GKKDIEAINV 75
G K A+NV
Sbjct: 57 GAKGPSAVNV 66
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 4/67 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V+G VK+++ +GFGFIT D +D+FVH S+I F++L G+ V+F I G K
Sbjct: 4 VKGNVKWFNESKGFGFITPEDGSKDVFVHFSAITSDG----FKTLAEGQKVEFEITEGAK 59
Query: 170 DIEAINV 176
A+NV
Sbjct: 60 GPSAVNV 66
>gi|383813226|ref|ZP_09968652.1| cold shock-like protein CspC2 [Serratia sp. M24T3]
gi|383297954|gb|EIC86262.1| cold shock-like protein CspC2 [Serratia sp. M24T3]
Length = 70
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
++G VK+++ +GFGFIT D +D+FVH S+I + F++L G+ V F+I G K
Sbjct: 5 MKGQVKWFNESKGFGFITPADGSKDVFVHFSAI----QDQGFKTLAEGQNVQFSIENGAK 60
Query: 69 DIEAINVTG 77
A NVT
Sbjct: 61 GPSAANVTA 69
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
++G VK+++ +GFGFIT D +D+FVH S+I + F++L G+ V F+I G K
Sbjct: 5 MKGQVKWFNESKGFGFITPADGSKDVFVHFSAI----QDQGFKTLAEGQNVQFSIENGAK 60
Query: 170 DIEAINVTG 178
A NVT
Sbjct: 61 GPSAANVTA 69
>gi|322832644|ref|YP_004212671.1| cold-shock protein [Rahnella sp. Y9602]
gi|383190497|ref|YP_005200625.1| cold shock protein [Rahnella aquatilis CIP 78.65 = ATCC 33071]
gi|384257827|ref|YP_005401761.1| cold-shock protein [Rahnella aquatilis HX2]
gi|321167845|gb|ADW73544.1| cold-shock DNA-binding domain protein [Rahnella sp. Y9602]
gi|371588755|gb|AEX52485.1| cold shock protein [Rahnella aquatilis CIP 78.65 = ATCC 33071]
gi|380753803|gb|AFE58194.1| cold-shock protein [Rahnella aquatilis HX2]
Length = 69
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query: 6 IHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGV 65
+ ++G VK+++ +GFGFIT D +D+FVH S+I F++L G+ V F I
Sbjct: 1 MSMMKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQDQG----FKTLAEGQNVQFTIEN 56
Query: 66 GKKDIEAINVTG 77
G K A NVT
Sbjct: 57 GAKGPSAANVTA 68
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query: 107 VHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGV 166
+ ++G VK+++ +GFGFIT D +D+FVH S+I F++L G+ V F I
Sbjct: 1 MSMMKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQDQG----FKTLAEGQNVQFTIEN 56
Query: 167 GKKDIEAINVTG 178
G K A NVT
Sbjct: 57 GAKGPSAANVTA 68
>gi|197116608|ref|YP_002137035.1| cold shock DNA/RNA-binding protein [Geobacter bemidjiensis Bem]
gi|197085968|gb|ACH37239.1| cold shock DNA/RNA-binding protein [Geobacter bemidjiensis Bem]
Length = 66
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 44/68 (64%), Gaps = 5/68 (7%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+G+VK+++ +GFGFI + +N ED+FVH S+I F+SL G+ V F++ G K
Sbjct: 2 AKGVVKWFNDSKGFGFIEQ-ENGEDVFVHFSAI----QGDGFKSLAEGDSVTFDVQQGPK 56
Query: 69 DIEAINVT 76
++A NVT
Sbjct: 57 GLQAANVT 64
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 44/68 (64%), Gaps = 5/68 (7%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+G+VK+++ +GFGFI + +N ED+FVH S+I F+SL G+ V F++ G K
Sbjct: 2 AKGVVKWFNDSKGFGFIEQ-ENGEDVFVHFSAI----QGDGFKSLAEGDSVTFDVQQGPK 56
Query: 170 DIEAINVT 177
++A NVT
Sbjct: 57 GLQAANVT 64
>gi|322420109|ref|YP_004199332.1| cold-shock DNA-binding domain-containing protein [Geobacter sp.
M18]
gi|320126496|gb|ADW14056.1| cold-shock DNA-binding domain protein [Geobacter sp. M18]
Length = 67
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 42/67 (62%), Gaps = 5/67 (7%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+G VK+++ +GFGFI + DN ED+FVH S+I F+SL GE V F++ G K
Sbjct: 2 AQGKVKWFNDAKGFGFIEQ-DNGEDVFVHFSAITGEG----FKSLAEGESVSFDVTNGPK 56
Query: 69 DIEAINV 75
++A NV
Sbjct: 57 GLQAANV 63
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 42/67 (62%), Gaps = 5/67 (7%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+G VK+++ +GFGFI + DN ED+FVH S+I F+SL GE V F++ G K
Sbjct: 2 AQGKVKWFNDAKGFGFIEQ-DNGEDVFVHFSAITGEG----FKSLAEGESVSFDVTNGPK 56
Query: 170 DIEAINV 176
++A NV
Sbjct: 57 GLQAANV 63
>gi|119357559|ref|YP_912203.1| cold-shock DNA-binding protein family protein [Chlorobium
phaeobacteroides DSM 266]
gi|119354908|gb|ABL65779.1| cold-shock DNA-binding protein family [Chlorobium
phaeobacteroides DSM 266]
Length = 85
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 6/87 (6%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
R VK++D K+G+GFI + EDIFVH S+I+ ++ F+ L VDF + +K
Sbjct: 2 ARSKVKWFDGKKGYGFIVNPEGGEDIFVHFSAII---CEQSFKVLNQDADVDFELEKTQK 58
Query: 69 DIEAINVTGPNGIPVQGAPKSSSETVS 95
+A NV +PV GA +S S V+
Sbjct: 59 GFQAKNV---REVPVTGASESPSLDVA 82
Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 6/82 (7%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
R VK++D K+G+GFI + EDIFVH S+I+ ++ F+ L VDF + +K
Sbjct: 2 ARSKVKWFDGKKGYGFIVNPEGGEDIFVHFSAII---CEQSFKVLNQDADVDFELEKTQK 58
Query: 170 DIEAINVTGPNGIPVQGAPKVP 191
+A NV +PV GA + P
Sbjct: 59 GFQAKNV---REVPVTGASESP 77
>gi|22125131|ref|NP_668554.1| cold shock protein [Yersinia pestis KIM10+]
gi|45442244|ref|NP_993783.1| cold shock protein [Yersinia pestis biovar Microtus str. 91001]
gi|21957990|gb|AAM84805.1|AE013726_8 homolog of Salmonella cold shock protein [Yersinia pestis KIM10+]
gi|45437108|gb|AAS62660.1| cold shock protein [Yersinia pestis biovar Microtus str. 91001]
Length = 80
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 47/72 (65%), Gaps = 4/72 (5%)
Query: 4 FEIHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
F + + G+VK++D+ +GFGFI+ D +D+FVH S+I + +++L G+ V+F+I
Sbjct: 10 FMSNKMTGLVKWFDAGKGFGFISPADGSKDVFVHFSAIQGND----YKTLDEGQNVEFSI 65
Query: 64 GVGKKDIEAINV 75
G+K A+NV
Sbjct: 66 EQGQKGPSAVNV 77
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 45/67 (67%), Gaps = 4/67 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+ G+VK++D+ +GFGFI+ D +D+FVH S+I + +++L G+ V+F+I G+K
Sbjct: 15 MTGLVKWFDAGKGFGFISPADGSKDVFVHFSAIQGND----YKTLDEGQNVEFSIEQGQK 70
Query: 170 DIEAINV 176
A+NV
Sbjct: 71 GPSAVNV 77
>gi|410087437|ref|ZP_11284141.1| Cold shock protein CspA [Morganella morganii SC01]
gi|455739929|ref|YP_007506195.1| Cold shock protein CspA [Morganella morganii subsp. morganii KT]
gi|409766172|gb|EKN50268.1| Cold shock protein CspA [Morganella morganii SC01]
gi|455421492|gb|AGG31822.1| Cold shock protein CspA [Morganella morganii subsp. morganii KT]
Length = 70
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 8 TVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGK 67
T+ G VK+++ +GFGFIT D +D+FVH S+I F+SL G+ V F I G
Sbjct: 4 TITGTVKWFNDDKGFGFITPADGSKDVFVHFSAI----QSDSFKSLAEGQQVSFTIENGM 59
Query: 68 KDIEAINV 75
K A NV
Sbjct: 60 KGPAAANV 67
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 109 TVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGK 168
T+ G VK+++ +GFGFIT D +D+FVH S+I F+SL G+ V F I G
Sbjct: 4 TITGTVKWFNDDKGFGFITPADGSKDVFVHFSAI----QSDSFKSLAEGQQVSFTIENGM 59
Query: 169 KDIEAINV 176
K A NV
Sbjct: 60 KGPAAANV 67
>gi|422015212|ref|ZP_16361814.1| cold shock protein CspE [Providencia burhodogranariea DSM 19968]
gi|414099833|gb|EKT61467.1| cold shock protein CspE [Providencia burhodogranariea DSM 19968]
Length = 69
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 4/70 (5%)
Query: 6 IHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGV 65
+ V+G VK+++ +GFGFIT D +D+FVH S+I F++L G+ V+F I
Sbjct: 1 MSKVKGSVKWFNESKGFGFITPEDGSKDVFVHFSAITSDG----FKTLAEGQRVEFEITD 56
Query: 66 GKKDIEAINV 75
G K A+NV
Sbjct: 57 GAKGPSAVNV 66
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 4/67 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V+G VK+++ +GFGFIT D +D+FVH S+I F++L G+ V+F I G K
Sbjct: 4 VKGSVKWFNESKGFGFITPEDGSKDVFVHFSAITSDG----FKTLAEGQRVEFEITDGAK 59
Query: 170 DIEAINV 176
A+NV
Sbjct: 60 GPSAVNV 66
>gi|238898015|ref|YP_002923695.1| cold shock protein, transcription antiterminator, affects
expression of rpoS and uspA [Candidatus Hamiltonella
defensa 5AT (Acyrthosiphon pisum)]
gi|229465773|gb|ACQ67547.1| cold shock protein, transcription antiterminator, affects
expression of rpoS and uspA [Candidatus Hamiltonella
defensa 5AT (Acyrthosiphon pisum)]
Length = 69
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 44/70 (62%), Gaps = 4/70 (5%)
Query: 6 IHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGV 65
+ ++G VK+++ +GFGFIT DN +D+FVH S+I F++L G+ V+F I
Sbjct: 1 MAKIKGKVKWFNESKGFGFITPDDNSKDVFVHFSAIQDSG----FKTLAEGQGVEFEIAD 56
Query: 66 GKKDIEAINV 75
G+K A++V
Sbjct: 57 GQKGPSAVDV 66
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 43/67 (64%), Gaps = 4/67 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
++G VK+++ +GFGFIT DN +D+FVH S+I F++L G+ V+F I G+K
Sbjct: 4 IKGKVKWFNESKGFGFITPDDNSKDVFVHFSAIQDSG----FKTLAEGQGVEFEIADGQK 59
Query: 170 DIEAINV 176
A++V
Sbjct: 60 GPSAVDV 66
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.141 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,050,416,301
Number of Sequences: 23463169
Number of extensions: 126255650
Number of successful extensions: 299275
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 2454
Number of HSP's successfully gapped in prelim test: 4000
Number of HSP's that attempted gapping in prelim test: 285779
Number of HSP's gapped (non-prelim): 13015
length of query: 191
length of database: 8,064,228,071
effective HSP length: 134
effective length of query: 57
effective length of database: 9,215,130,721
effective search space: 525262451097
effective search space used: 525262451097
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 72 (32.3 bits)