BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9900
(191 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P45441|YBX2B_XENLA Y-box-binding protein 2-B OS=Xenopus laevis GN=ybx2-b PE=1 SV=2
Length = 324
Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 62/78 (79%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V+G VK+++ + G+GFI R D+KED+FVH+++I K NP+KF +S+G GE V+F++ G+K
Sbjct: 42 VQGTVKWFNVRNGYGFINRNDSKEDVFVHQTAIKKNNPRKFLRSVGDGETVEFDVVEGEK 101
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PV+G+
Sbjct: 102 GAEAANVTGPGGVPVKGS 119
Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 62/78 (79%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V+G VK+++ + G+GFI R D+KED+FVH+++I K NP+KF +S+G GE V+F++ G+K
Sbjct: 42 VQGTVKWFNVRNGYGFINRNDSKEDVFVHQTAIKKNNPRKFLRSVGDGETVEFDVVEGEK 101
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PV+G+
Sbjct: 102 GAEAANVTGPGGVPVKGS 119
>sp|P21574|YBX2A_XENLA Y-box-binding protein 2-A OS=Xenopus laevis GN=ybx2-a PE=1 SV=3
Length = 336
Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V+G VK+++ + G+GFI R D KED+FVH+++I K NP+KF +S+G GE V+F++ G+K
Sbjct: 42 VQGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGETVEFDVVEGEK 101
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PV+G+
Sbjct: 102 GAEAANVTGPGGVPVKGS 119
Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 61/78 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V+G VK+++ + G+GFI R D KED+FVH+++I K NP+KF +S+G GE V+F++ G+K
Sbjct: 42 VQGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGETVEFDVVEGEK 101
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PV+G+
Sbjct: 102 GAEAANVTGPGGVPVKGS 119
>sp|P21573|YBOX1_XENLA Nuclease-sensitive element-binding protein 1 OS=Xenopus laevis
GN=ybx1 PE=2 SV=1
Length = 303
Score = 95.1 bits (235), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 37 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 96
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 97 GAEAANVTGPEGVPVQGS 114
Score = 95.1 bits (235), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 37 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 96
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 97 GAEAANVTGPEGVPVQGS 114
>sp|Q28618|YBOX1_RABIT Nuclease-sensitive element-binding protein 1 OS=Oryctolagus
cuniculus GN=YBX1 PE=1 SV=3
Length = 324
Score = 94.4 bits (233), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 59 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 118
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 119 GAEAANVTGPGGVPVQGS 136
Score = 94.4 bits (233), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 59 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 118
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 119 GAEAANVTGPGGVPVQGS 136
>sp|P62961|YBOX1_RAT Nuclease-sensitive element-binding protein 1 OS=Rattus norvegicus
GN=Ybx1 PE=1 SV=3
Length = 322
Score = 94.0 bits (232), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 57 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 116
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 117 GAEAANVTGPGGVPVQGS 134
Score = 94.0 bits (232), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 57 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 116
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 117 GAEAANVTGPGGVPVQGS 134
>sp|P62960|YBOX1_MOUSE Nuclease-sensitive element-binding protein 1 OS=Mus musculus
GN=Ybx1 PE=1 SV=3
Length = 322
Score = 94.0 bits (232), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 57 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 116
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 117 GAEAANVTGPGGVPVQGS 134
Score = 94.0 bits (232), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 57 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 116
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 117 GAEAANVTGPGGVPVQGS 134
>sp|P67809|YBOX1_HUMAN Nuclease-sensitive element-binding protein 1 OS=Homo sapiens
GN=YBX1 PE=1 SV=3
Length = 324
Score = 94.0 bits (232), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 59 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 118
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 119 GAEAANVTGPGGVPVQGS 136
Score = 94.0 bits (232), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 59 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 118
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 119 GAEAANVTGPGGVPVQGS 136
>sp|P67808|YBOX1_BOVIN Nuclease-sensitive element-binding protein 1 OS=Bos taurus GN=YBX1
PE=2 SV=3
Length = 324
Score = 94.0 bits (232), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 59 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 118
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 119 GAEAANVTGPGGVPVQGS 136
Score = 94.0 bits (232), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 59 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 118
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 119 GAEAANVTGPGGVPVQGS 136
>sp|Q06066|YBOX1_CHICK Nuclease-sensitive element-binding protein 1 OS=Gallus gallus
GN=YBX1 PE=2 SV=1
Length = 321
Score = 94.0 bits (232), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 56 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 115
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 116 GAEAANVTGPGGVPVQGS 133
Score = 94.0 bits (232), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 56 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 115
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 116 GAEAANVTGPGGVPVQGS 133
>sp|Q62764|DBPA_RAT DNA-binding protein A OS=Rattus norvegicus GN=Csda PE=2 SV=1
Length = 361
Score = 93.2 bits (230), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 83 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 142
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G+PV+G+
Sbjct: 143 GAEAANVTGPDGVPVEGS 160
Score = 93.2 bits (230), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 83 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 142
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G+PV+G+
Sbjct: 143 GAEAANVTGPDGVPVEGS 160
>sp|Q9JKB3|DBPA_MOUSE DNA-binding protein A OS=Mus musculus GN=Csda PE=1 SV=2
Length = 361
Score = 93.2 bits (230), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 83 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 142
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G+PV+G+
Sbjct: 143 GAEAANVTGPDGVPVEGS 160
Score = 93.2 bits (230), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 83 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 142
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G+PV+G+
Sbjct: 143 GAEAANVTGPDGVPVEGS 160
>sp|P16989|DBPA_HUMAN DNA-binding protein A OS=Homo sapiens GN=CSDA PE=1 SV=4
Length = 372
Score = 92.8 bits (229), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 91 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 150
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G+PV+G+
Sbjct: 151 GAEAANVTGPDGVPVEGS 168
Score = 92.8 bits (229), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 91 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 150
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G+PV+G+
Sbjct: 151 GAEAANVTGPDGVPVEGS 168
>sp|Q9Y2T7|YBOX2_HUMAN Y-box-binding protein 2 OS=Homo sapiens GN=YBX2 PE=1 SV=2
Length = 364
Score = 92.0 bits (227), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 72/106 (67%), Gaps = 5/106 (4%)
Query: 87 PKSSSETVSGT----YRNDSFFPAVH-TVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSS 141
P + + VSGT R+ + P + V G VK+++ + G+GFI R D KED+FVH+++
Sbjct: 66 PGNPATAVSGTPAPPARSQADKPVLAIQVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTA 125
Query: 142 IVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGA 187
I + NP+KF +S+G GE V+F++ G+K EA NVTGP G+PV+G+
Sbjct: 126 IKRNNPRKFLRSVGDGETVEFDVVEGEKGAEATNVTGPGGVPVKGS 171
Score = 92.0 bits (227), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +S+G GE V+F++ G+K
Sbjct: 94 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEK 153
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PV+G+
Sbjct: 154 GAEATNVTGPGGVPVKGS 171
>sp|Q00436|YB3_XENLA B box-binding protein OS=Xenopus laevis PE=2 SV=1
Length = 305
Score = 91.3 bits (225), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 59/78 (75%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 37 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 96
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP +PVQG+
Sbjct: 97 GAEAANVTGPGPVPVQGS 114
Score = 91.3 bits (225), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 59/78 (75%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 37 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 96
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP +PVQG+
Sbjct: 97 GAEAANVTGPGPVPVQGS 114
>sp|Q9Z2C8|YBOX2_MOUSE Y-box-binding protein 2 OS=Mus musculus GN=Ybx2 PE=1 SV=1
Length = 360
Score = 89.7 bits (221), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 59/78 (75%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +S+G GE V+F++ G+K
Sbjct: 96 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEK 155
Query: 69 DIEAINVTGPNGIPVQGA 86
A NVTGP G+PV+G+
Sbjct: 156 GARAANVTGPGGVPVKGS 173
Score = 89.7 bits (221), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 59/78 (75%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +S+G GE V+F++ G+K
Sbjct: 96 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEK 155
Query: 170 DIEAINVTGPNGIPVQGA 187
A NVTGP G+PV+G+
Sbjct: 156 GARAANVTGPGGVPVKGS 173
>sp|P41824|YBOXH_APLCA Y-box factor homolog OS=Aplysia californica PE=2 SV=1
Length = 253
Score = 89.4 bits (220), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 59/81 (72%)
Query: 107 VHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGV 166
V G VK+++ K G+GFI R D KED+FVH+++IVK NP+K+ +S+G GE V+F++
Sbjct: 30 ASQVSGTVKWFNVKSGYGFINRDDTKEDVFVHQTAIVKNNPRKYLRSVGDGEKVEFDVVE 89
Query: 167 GKKDIEAINVTGPNGIPVQGA 187
G+K EA NVTGP G VQG+
Sbjct: 90 GEKGNEAANVTGPEGSNVQGS 110
Score = 89.0 bits (219), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 59/78 (75%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ K G+GFI R D KED+FVH+++IVK NP+K+ +S+G GE V+F++ G+K
Sbjct: 33 VSGTVKWFNVKSGYGFINRDDTKEDVFVHQTAIVKNNPRKYLRSVGDGEKVEFDVVEGEK 92
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G VQG+
Sbjct: 93 GNEAANVTGPEGSNVQGS 110
>sp|Q38896|CSP4_ARATH Cold shock domain-containing protein 4 OS=Arabidopsis thaliana
GN=CSP4 PE=1 SV=1
Length = 201
Score = 64.7 bits (156), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 52/77 (67%), Gaps = 5/77 (6%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 69
+G VK++D+++GFGFIT D +D+FVH+SSI + F+SL E V+F++ V
Sbjct: 16 KGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIR----SEGFRSLAAEESVEFDVEVDNSG 71
Query: 70 I-EAINVTGPNGIPVQG 85
+AI V+GP+G PVQG
Sbjct: 72 RPKAIEVSGPDGAPVQG 88
Score = 64.7 bits (156), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 52/77 (67%), Gaps = 5/77 (6%)
Query: 111 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 170
+G VK++D+++GFGFIT D +D+FVH+SSI + F+SL E V+F++ V
Sbjct: 16 KGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIR----SEGFRSLAAEESVEFDVEVDNSG 71
Query: 171 I-EAINVTGPNGIPVQG 186
+AI V+GP+G PVQG
Sbjct: 72 RPKAIEVSGPDGAPVQG 88
>sp|P27484|GRP2_NICSY Glycine-rich protein 2 OS=Nicotiana sylvestris GN=GRP-2 PE=2 SV=1
Length = 214
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 49/85 (57%), Gaps = 5/85 (5%)
Query: 1 MTKFEIHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVD 60
M + +G VK++ ++GFGFIT D ED+FVH+S I F+SL GE V+
Sbjct: 1 MAEESGQRAKGTVKWFSDQKGFGFITPDDGGEDLFVHQSGIRSEG----FRSLAEGETVE 56
Query: 61 FNIGVGKKD-IEAINVTGPNGIPVQ 84
F + G +A++VTGP+G VQ
Sbjct: 57 FEVESGGDGRTKAVDVTGPDGAAVQ 81
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+G VK++ ++GFGFIT D ED+FVH+S I F+SL GE V+F + G
Sbjct: 9 AKGTVKWFSDQKGFGFITPDDGGEDLFVHQSGIRSEG----FRSLAEGETVEFEVESGGD 64
Query: 170 D-IEAINVTGPNGIPVQ 185
+A++VTGP+G VQ
Sbjct: 65 GRTKAVDVTGPDGAAVQ 81
>sp|Q803L0|LN28A_DANRE Protein lin-28 homolog A OS=Danio rerio GN=lin28a PE=1 SV=1
Length = 202
Score = 56.6 bits (135), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 11/87 (12%)
Query: 112 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 164
G+ K+++ + GFGF++ LD+ D+FVH+S + + F+SL GE V+F
Sbjct: 36 GVCKWFNVRMGFGFLSMTHREGICLDSPVDVFVHQSKLHM----EGFRSLKEGEAVEFTF 91
Query: 165 GVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E++ VTGP G P G+ K P
Sbjct: 92 KRSSKGLESLQVTGPGGAPCVGSEKKP 118
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 11/101 (10%)
Query: 11 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
G+ K+++ + GFGF++ LD+ D+FVH+S + + F+SL GE V+F
Sbjct: 36 GVCKWFNVRMGFGFLSMTHREGICLDSPVDVFVHQSKLHM----EGFRSLKEGEAVEFTF 91
Query: 64 GVGKKDIEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFF 104
K +E++ VTGP G P G+ K T + D F
Sbjct: 92 KRSSKGLESLQVTGPGGAPCVGSEKKPKGTQKRRSKGDRCF 132
>sp|Q5EB47|LN28A_XENTR Protein lin-28 homolog A OS=Xenopus tropicalis GN=lin28a PE=2 SV=1
Length = 195
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 56/114 (49%), Gaps = 14/114 (12%)
Query: 85 GAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFITR-------LDNKEDIFV 137
G PKS ET ++S + G+ K+++ + GFGF+T L+ D+FV
Sbjct: 12 GLPKSLDETADIHKSDESL---IFQGSGVCKWFNVRMGFGFLTMTKKEGTDLETPVDVFV 68
Query: 138 HKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGAPKVP 191
H+S + F+SL GE V+F K +E+ VTGP G P G+ + P
Sbjct: 69 HQSKLHMEG----FRSLKEGESVEFTFKKSSKGLESTRVTGPGGAPCIGSERRP 118
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 11/85 (12%)
Query: 11 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
G+ K+++ + GFGF+T L+ D+FVH+S + F+SL GE V+F
Sbjct: 36 GVCKWFNVRMGFGFLTMTKKEGTDLETPVDVFVHQSKLHMEG----FRSLKEGESVEFTF 91
Query: 64 GVGKKDIEAINVTGPNGIPVQGAPK 88
K +E+ VTGP G P G+ +
Sbjct: 92 KKSSKGLESTRVTGPGGAPCIGSER 116
>sp|Q94C69|CSP3_ARATH Cold shock domain-containing protein 3 OS=Arabidopsis thaliana
GN=CSP3 PE=2 SV=1
Length = 301
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 5/71 (7%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK-D 69
G V ++ +G+GFIT D E++FVH+SSIV F+SL LGE V++ I +G
Sbjct: 13 GKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSDG----FRSLTLGESVEYEIALGSDGK 68
Query: 70 IEAINVTGPNG 80
+AI VT P G
Sbjct: 69 TKAIEVTAPGG 79
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 5/71 (7%)
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK-D 170
G V ++ +G+GFIT D E++FVH+SSIV F+SL LGE V++ I +G
Sbjct: 13 GKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSDG----FRSLTLGESVEYEIALGSDGK 68
Query: 171 IEAINVTGPNG 181
+AI VT P G
Sbjct: 69 TKAIEVTAPGG 79
>sp|Q41188|CSP2_ARATH Cold shock protein 2 OS=Arabidopsis thaliana GN=CSP2 PE=1 SV=1
Length = 203
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 53/77 (68%), Gaps = 5/77 (6%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 69
+G VK++D+++GFGFIT D +D+FVH+SSI + F+SL E V+F + + +
Sbjct: 12 KGSVKWFDTQKGFGFITPDDGGDDLFVHQSSIR----SEGFRSLAAEEAVEFEVEIDNNN 67
Query: 70 I-EAINVTGPNGIPVQG 85
+AI+V+GP+G PVQG
Sbjct: 68 RPKAIDVSGPDGAPVQG 84
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 53/77 (68%), Gaps = 5/77 (6%)
Query: 111 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 170
+G VK++D+++GFGFIT D +D+FVH+SSI + F+SL E V+F + + +
Sbjct: 12 KGSVKWFDTQKGFGFITPDDGGDDLFVHQSSIR----SEGFRSLAAEEAVEFEVEIDNNN 67
Query: 171 I-EAINVTGPNGIPVQG 186
+AI+V+GP+G PVQG
Sbjct: 68 RPKAIDVSGPDGAPVQG 84
>sp|Q45KJ4|LN28B_CHICK Protein lin-28 homolog B OS=Gallus gallus GN=LIN28B PE=2 SV=1
Length = 250
Score = 53.5 bits (127), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 11/87 (12%)
Query: 112 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 164
G K+++ + GFGFI+ L++ D+FVH+S + F+SL GE V+F
Sbjct: 32 GHCKWFNVRMGFGFISMSSREGSPLESPVDVFVHQSKLYMEG----FRSLKEGEPVEFTY 87
Query: 165 GVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP G P G+ + P
Sbjct: 88 KKSSKGLESIRVTGPGGSPCLGSERRP 114
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 11/83 (13%)
Query: 11 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
G K+++ + GFGFI+ L++ D+FVH+S + F+SL GE V+F
Sbjct: 32 GHCKWFNVRMGFGFISMSSREGSPLESPVDVFVHQSKLYMEG----FRSLKEGEPVEFTY 87
Query: 64 GVGKKDIEAINVTGPNGIPVQGA 86
K +E+I VTGP G P G+
Sbjct: 88 KKSSKGLESIRVTGPGGSPCLGS 110
>sp|Q8JHC4|LN28A_XENLA Protein lin-28 homolog A OS=Xenopus laevis GN=lin28a PE=2 SV=1
Length = 195
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 11/87 (12%)
Query: 112 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 164
G+ K+++ + GFGF+T L+ D+FVH+S + + F+SL GE V+F
Sbjct: 36 GVCKWFNVRMGFGFLTMTKKEGTDLETPLDVFVHQSKLHM----EGFRSLKEGESVEFTF 91
Query: 165 GVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+ VTGP G P G+ + P
Sbjct: 92 KKSSKGLESTQVTGPGGAPCIGSERRP 118
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 11/85 (12%)
Query: 11 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
G+ K+++ + GFGF+T L+ D+FVH+S + + F+SL GE V+F
Sbjct: 36 GVCKWFNVRMGFGFLTMTKKEGTDLETPLDVFVHQSKLHM----EGFRSLKEGESVEFTF 91
Query: 64 GVGKKDIEAINVTGPNGIPVQGAPK 88
K +E+ VTGP G P G+ +
Sbjct: 92 KKSSKGLESTQVTGPGGAPCIGSER 116
>sp|Q45KJ5|LN28A_CHICK Protein lin-28 homolog A OS=Gallus gallus GN=LIN28A PE=2 SV=2
Length = 202
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 11/87 (12%)
Query: 112 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 164
GI K+++ + GFGF++ LD+ D+FVH+S + F+SL GE V+F
Sbjct: 36 GICKWFNVRMGFGFLSMTAKGGAMLDSPVDVFVHQSKLHMEG----FRSLKEGEAVEFTF 91
Query: 165 GVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP G+ G+ + P
Sbjct: 92 KKSSKGLESIRVTGPGGVFCIGSERRP 118
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 50/91 (54%), Gaps = 14/91 (15%)
Query: 11 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
GI K+++ + GFGF++ LD+ D+FVH+S + F+SL GE V+F
Sbjct: 36 GICKWFNVRMGFGFLSMTAKGGAMLDSPVDVFVHQSKLHMEG----FRSLKEGEAVEFTF 91
Query: 64 GVGKKDIEAINVTGPNGIPVQGA---PKSSS 91
K +E+I VTGP G+ G+ PKS S
Sbjct: 92 KKSSKGLESIRVTGPGGVFCIGSERRPKSKS 122
>sp|O54310|CSP_THEMA Cold shock-like protein OS=Thermotoga maritima (strain ATCC 43589
/ MSB8 / DSM 3109 / JCM 10099) GN=csp PE=1 SV=1
Length = 66
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 46/67 (68%), Gaps = 5/67 (7%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+RG VK++DSK+G+GFIT+ D D+FVH S+I + F++L G++V+F I GKK
Sbjct: 1 MRGKVKWFDSKKGYGFITK-DEGGDVFVHWSAI----EMEGFKTLKEGQVVEFEIQEGKK 55
Query: 69 DIEAINV 75
+A +V
Sbjct: 56 GPQAAHV 62
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 46/67 (68%), Gaps = 5/67 (7%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+RG VK++DSK+G+GFIT+ D D+FVH S+I + F++L G++V+F I GKK
Sbjct: 1 MRGKVKWFDSKKGYGFITK-DEGGDVFVHWSAI----EMEGFKTLKEGQVVEFEIQEGKK 55
Query: 170 DIEAINV 176
+A +V
Sbjct: 56 GPQAAHV 62
>sp|Q8AVK2|LN28B_XENLA Protein lin-28 homolog B (Fragment) OS=Xenopus laevis GN=lin28b
PE=2 SV=1
Length = 252
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 11/94 (11%)
Query: 105 PAVHTVRGIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLG 157
P V G K+++ + GFGFI+ L+N D+FVH+S + F+SL G
Sbjct: 28 PQVLLGSGHCKWFNVRMGFGFISMTSREGSPLENPVDVFVHQSKLYMDG----FRSLKEG 83
Query: 158 EIVDFNIGVGKKDIEAINVTGPNGIPVQGAPKVP 191
E V+F K E++ VTGP G P G+ + P
Sbjct: 84 EPVEFTFKKSSKGFESLRVTGPGGNPCLGSERRP 117
Score = 50.4 bits (119), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 11/83 (13%)
Query: 11 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
G K+++ + GFGFI+ L+N D+FVH+S + F+SL GE V+F
Sbjct: 35 GHCKWFNVRMGFGFISMTSREGSPLENPVDVFVHQSKLYMDG----FRSLKEGEPVEFTF 90
Query: 64 GVGKKDIEAINVTGPNGIPVQGA 86
K E++ VTGP G P G+
Sbjct: 91 KKSSKGFESLRVTGPGGNPCLGS 113
>sp|Q45KJ6|LN28B_MOUSE Protein lin-28 homolog B OS=Mus musculus GN=Lin28b PE=2 SV=2
Length = 247
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 48/94 (51%), Gaps = 11/94 (11%)
Query: 105 PAVHTVRGIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLG 157
P V G K+++ + GFGFI+ LD D+FVH+S + F+SL G
Sbjct: 23 PQVLHGTGHCKWFNVRMGFGFISMISREGNPLDIPVDVFVHQSKLFMEG----FRSLKEG 78
Query: 158 EIVDFNIGVGKKDIEAINVTGPNGIPVQGAPKVP 191
E V+F K +E+I VTGP G P G+ + P
Sbjct: 79 EPVEFTFKKSPKGLESIRVTGPGGSPCLGSERRP 112
Score = 50.1 bits (118), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 11/83 (13%)
Query: 11 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
G K+++ + GFGFI+ LD D+FVH+S + F+SL GE V+F
Sbjct: 30 GHCKWFNVRMGFGFISMISREGNPLDIPVDVFVHQSKLFMEG----FRSLKEGEPVEFTF 85
Query: 64 GVGKKDIEAINVTGPNGIPVQGA 86
K +E+I VTGP G P G+
Sbjct: 86 KKSPKGLESIRVTGPGGSPCLGS 108
>sp|Q9H9Z2|LN28A_HUMAN Protein lin-28 homolog A OS=Homo sapiens GN=LIN28A PE=1 SV=1
Length = 209
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 11/87 (12%)
Query: 112 GIVKFYDSKRGFGFIT-------RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 164
GI K+++ + GFGF++ LD D+FVH+S + F+SL GE V+F
Sbjct: 42 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEG----FRSLKEGEAVEFTF 97
Query: 165 GVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP G+ G+ + P
Sbjct: 98 KKSAKGLESIRVTGPGGVFCIGSERRP 124
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 11/78 (14%)
Query: 11 GIVKFYDSKRGFGFIT-------RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
GI K+++ + GFGF++ LD D+FVH+S + F+SL GE V+F
Sbjct: 42 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEG----FRSLKEGEAVEFTF 97
Query: 64 GVGKKDIEAINVTGPNGI 81
K +E+I VTGP G+
Sbjct: 98 KKSAKGLESIRVTGPGGV 115
>sp|Q6ZN17|LN28B_HUMAN Protein lin-28 homolog B OS=Homo sapiens GN=LIN28B PE=1 SV=1
Length = 250
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 13/88 (14%)
Query: 112 GIVKFYDSKRGFGFITRLDNKE--------DIFVHKSSIVKMNPKKFFQSLGLGEIVDFN 163
G K+++ + GFGFI+ + N+E D+FVH+S + F+SL GE V+F
Sbjct: 32 GHCKWFNVRMGFGFISMI-NREGSPLDIPVDVFVHQSKLFMEG----FRSLKEGEPVEFT 86
Query: 164 IGVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP G P G+ + P
Sbjct: 87 FKKSSKGLESIRVTGPGGSPCLGSERRP 114
Score = 50.4 bits (119), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 15/92 (16%)
Query: 5 EIHTVRGI--VKFYDSKRGFGFITRLDNKE--------DIFVHKSSIVKMNPKKFFQSLG 54
E +RG K+++ + GFGFI+ + N+E D+FVH+S + F+SL
Sbjct: 24 ESQVLRGTGHCKWFNVRMGFGFISMI-NREGSPLDIPVDVFVHQSKLFMEG----FRSLK 78
Query: 55 LGEIVDFNIGVGKKDIEAINVTGPNGIPVQGA 86
GE V+F K +E+I VTGP G P G+
Sbjct: 79 EGEPVEFTFKKSSKGLESIRVTGPGGSPCLGS 110
>sp|Q8K3Y3|LN28A_MOUSE Protein lin-28 homolog A OS=Mus musculus GN=Lin28a PE=1 SV=1
Length = 209
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 11/87 (12%)
Query: 112 GIVKFYDSKRGFGFIT-------RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 164
GI K+++ + GFGF++ LD D+FVH+S + F+SL GE V+F
Sbjct: 42 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEG----FRSLKEGEAVEFTF 97
Query: 165 GVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP G+ G+ + P
Sbjct: 98 KKSAKGLESIRVTGPGGVFCIGSERRP 124
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 11/78 (14%)
Query: 11 GIVKFYDSKRGFGFIT-------RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
GI K+++ + GFGF++ LD D+FVH+S + F+SL GE V+F
Sbjct: 42 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEG----FRSLKEGEAVEFTF 97
Query: 64 GVGKKDIEAINVTGPNGI 81
K +E+I VTGP G+
Sbjct: 98 KKSAKGLESIRVTGPGGV 115
>sp|P0A9Y9|CSPC_SALTY Cold shock-like protein CspC OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=cspC PE=3 SV=2
Length = 69
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 4/68 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
++G VK+++ +GFGFIT D +D+FVH S+I F++L G+ V+F I G+K
Sbjct: 4 IKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNG----FKTLAEGQNVEFEIQDGQK 59
Query: 69 DIEAINVT 76
A+NVT
Sbjct: 60 GPAAVNVT 67
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 4/68 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
++G VK+++ +GFGFIT D +D+FVH S+I F++L G+ V+F I G+K
Sbjct: 4 IKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNG----FKTLAEGQNVEFEIQDGQK 59
Query: 170 DIEAINVT 177
A+NVT
Sbjct: 60 GPAAVNVT 67
>sp|P0A9Z0|CSPC_SALTI Cold shock-like protein CspC OS=Salmonella typhi GN=cspC PE=3
SV=2
Length = 69
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 4/68 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
++G VK+++ +GFGFIT D +D+FVH S+I F++L G+ V+F I G+K
Sbjct: 4 IKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNG----FKTLAEGQNVEFEIQDGQK 59
Query: 69 DIEAINVT 76
A+NVT
Sbjct: 60 GPAAVNVT 67
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 4/68 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
++G VK+++ +GFGFIT D +D+FVH S+I F++L G+ V+F I G+K
Sbjct: 4 IKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNG----FKTLAEGQNVEFEIQDGQK 59
Query: 170 DIEAINVT 177
A+NVT
Sbjct: 60 GPAAVNVT 67
>sp|E0J500|CSPC_ECOLW Cold shock-like protein CspC OS=Escherichia coli (strain ATCC
9637 / CCM 2024 / DSM 1116 / NCIMB 8666 / NRRL B-766 /
W) GN=cspC PE=1 SV=1
Length = 69
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 4/68 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
++G VK+++ +GFGFIT D +D+FVH S+I F++L G+ V+F I G+K
Sbjct: 4 IKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNG----FKTLAEGQNVEFEIQDGQK 59
Query: 69 DIEAINVT 76
A+NVT
Sbjct: 60 GPAAVNVT 67
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 4/68 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
++G VK+++ +GFGFIT D +D+FVH S+I F++L G+ V+F I G+K
Sbjct: 4 IKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNG----FKTLAEGQNVEFEIQDGQK 59
Query: 170 DIEAINVT 177
A+NVT
Sbjct: 60 GPAAVNVT 67
>sp|P0A9Y6|CSPC_ECOLI Cold shock-like protein CspC OS=Escherichia coli (strain K12)
GN=cspC PE=1 SV=2
Length = 69
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 4/68 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
++G VK+++ +GFGFIT D +D+FVH S+I F++L G+ V+F I G+K
Sbjct: 4 IKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNG----FKTLAEGQNVEFEIQDGQK 59
Query: 69 DIEAINVT 76
A+NVT
Sbjct: 60 GPAAVNVT 67
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 4/68 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
++G VK+++ +GFGFIT D +D+FVH S+I F++L G+ V+F I G+K
Sbjct: 4 IKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNG----FKTLAEGQNVEFEIQDGQK 59
Query: 170 DIEAINVT 177
A+NVT
Sbjct: 60 GPAAVNVT 67
>sp|P0A9Y7|CSPC_ECOL6 Cold shock-like protein CspC OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=cspC PE=3 SV=2
Length = 69
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 4/68 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
++G VK+++ +GFGFIT D +D+FVH S+I F++L G+ V+F I G+K
Sbjct: 4 IKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNG----FKTLAEGQNVEFEIQDGQK 59
Query: 69 DIEAINVT 76
A+NVT
Sbjct: 60 GPAAVNVT 67
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 4/68 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
++G VK+++ +GFGFIT D +D+FVH S+I F++L G+ V+F I G+K
Sbjct: 4 IKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNG----FKTLAEGQNVEFEIQDGQK 59
Query: 170 DIEAINVT 177
A+NVT
Sbjct: 60 GPAAVNVT 67
>sp|P0A9Y8|CSPC_ECO57 Cold shock-like protein CspC OS=Escherichia coli O157:H7 GN=cspC
PE=3 SV=2
Length = 69
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 4/68 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
++G VK+++ +GFGFIT D +D+FVH S+I F++L G+ V+F I G+K
Sbjct: 4 IKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNG----FKTLAEGQNVEFEIQDGQK 59
Query: 69 DIEAINVT 76
A+NVT
Sbjct: 60 GPAAVNVT 67
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 4/68 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
++G VK+++ +GFGFIT D +D+FVH S+I F++L G+ V+F I G+K
Sbjct: 4 IKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNG----FKTLAEGQNVEFEIQDGQK 59
Query: 170 DIEAINVT 177
A+NVT
Sbjct: 60 GPAAVNVT 67
>sp|Q83RI9|CSPC_SHIFL Cold shock-like protein CspC OS=Shigella flexneri GN=cspC PE=3
SV=3
Length = 69
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
++G VK+++ +GFGFIT D +D+FVH S+I K +L G+ V+F I G+K
Sbjct: 4 IKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNGLK----TLAEGQNVEFEIQDGQK 59
Query: 69 DIEAINVT 76
A+NVT
Sbjct: 60 GPAAVNVT 67
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
++G VK+++ +GFGFIT D +D+FVH S+I K +L G+ V+F I G+K
Sbjct: 4 IKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNGLK----TLAEGQNVEFEIQDGQK 59
Query: 170 DIEAINVT 177
A+NVT
Sbjct: 60 GPAAVNVT 67
>sp|P0A362|CSPB_YERPE Cold shock-like protein CspB OS=Yersinia pestis GN=cspB PE=3 SV=1
Length = 70
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 45/67 (67%), Gaps = 4/67 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+ G+VK++D+ +GFGFI+ D +D+FVH S+I + +++L G+ V+F+I G+K
Sbjct: 5 MTGLVKWFDAGKGFGFISPADGSKDVFVHFSAIQGND----YKTLDEGQNVEFSIEQGQK 60
Query: 69 DIEAINV 75
A+NV
Sbjct: 61 GPSAVNV 67
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 45/67 (67%), Gaps = 4/67 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+ G+VK++D+ +GFGFI+ D +D+FVH S+I + +++L G+ V+F+I G+K
Sbjct: 5 MTGLVKWFDAGKGFGFISPADGSKDVFVHFSAIQGND----YKTLDEGQNVEFSIEQGQK 60
Query: 170 DIEAINV 176
A+NV
Sbjct: 61 GPSAVNV 67
>sp|P0A363|CSPB_YEREN Cold shock-like protein CspB OS=Yersinia enterocolitica GN=cspB
PE=3 SV=1
Length = 70
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 45/67 (67%), Gaps = 4/67 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+ G+VK++D+ +GFGFI+ D +D+FVH S+I + +++L G+ V+F+I G+K
Sbjct: 5 MTGLVKWFDAGKGFGFISPADGSKDVFVHFSAIQGND----YKTLDEGQNVEFSIEQGQK 60
Query: 69 DIEAINV 75
A+NV
Sbjct: 61 GPSAVNV 67
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 45/67 (67%), Gaps = 4/67 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+ G+VK++D+ +GFGFI+ D +D+FVH S+I + +++L G+ V+F+I G+K
Sbjct: 5 MTGLVKWFDAGKGFGFISPADGSKDVFVHFSAIQGND----YKTLDEGQNVEFSIEQGQK 60
Query: 170 DIEAINV 176
A+NV
Sbjct: 61 GPSAVNV 67
>sp|Q9S170|CSPG_SHEVD Cold shock-like protein CspG OS=Shewanella violacea (strain JCM
10179 / CIP 106290 / LMG 19151 / DSS12) GN=cspG PE=2
SV=1
Length = 70
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 44/69 (63%), Gaps = 4/69 (5%)
Query: 7 HTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVG 66
++ G+VK+++ ++GFGFIT+ + +D+FVH SI F++L G+ V F + G
Sbjct: 3 NSTTGLVKWFNEEKGFGFITQDNGGDDVFVHFRSITSDG----FKTLAEGQKVSFEVEQG 58
Query: 67 KKDIEAINV 75
+K ++A NV
Sbjct: 59 QKGLQAANV 67
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 44/69 (63%), Gaps = 4/69 (5%)
Query: 108 HTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVG 167
++ G+VK+++ ++GFGFIT+ + +D+FVH SI F++L G+ V F + G
Sbjct: 3 NSTTGLVKWFNEEKGFGFITQDNGGDDVFVHFRSITSDG----FKTLAEGQKVSFEVEQG 58
Query: 168 KKDIEAINV 176
+K ++A NV
Sbjct: 59 QKGLQAANV 67
>sp|O65639|CSP1_ARATH Cold shock protein 1 OS=Arabidopsis thaliana GN=CSP1 PE=2 SV=1
Length = 299
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 47/75 (62%), Gaps = 5/75 (6%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD- 69
G V ++++ +G+GFIT D ++FVH+SSIV + ++SL +G+ V+F I G
Sbjct: 13 GKVNWFNASKGYGFITPDDGSVELFVHQSSIV----SEGYRSLTVGDAVEFAITQGSDGK 68
Query: 70 IEAINVTGPNGIPVQ 84
+A+NVT P G ++
Sbjct: 69 TKAVNVTAPGGGSLK 83
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 47/75 (62%), Gaps = 5/75 (6%)
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD- 170
G V ++++ +G+GFIT D ++FVH+SSIV + ++SL +G+ V+F I G
Sbjct: 13 GKVNWFNASKGYGFITPDDGSVELFVHQSSIV----SEGYRSLTVGDAVEFAITQGSDGK 68
Query: 171 IEAINVTGPNGIPVQ 185
+A+NVT P G ++
Sbjct: 69 TKAVNVTAPGGGSLK 83
>sp|Q9VRN5|LIN28_DROME Protein lin-28 homolog OS=Drosophila melanogaster GN=lin-28 PE=2
SV=2
Length = 195
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 49/83 (59%), Gaps = 5/83 (6%)
Query: 5 EIHTVR-GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
E VR G K+++ +G+GF+T D +++FVH+ S+++M+ F+SLG E V+F
Sbjct: 34 ECGCVRLGKCKWFNVAKGWGFLTPNDGGQEVFVHQ-SVIQMSG---FRSLGEQEEVEFEC 89
Query: 64 GVGKKDIEAINVTGPNGIPVQGA 86
+ +EA V+ +G QG+
Sbjct: 90 QRTSRGLEATRVSSRHGGSCQGS 112
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 46/76 (60%), Gaps = 4/76 (5%)
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 171
G K+++ +G+GF+T D +++FVH+ S+++M+ F+SLG E V+F + +
Sbjct: 41 GKCKWFNVAKGWGFLTPNDGGQEVFVHQ-SVIQMSG---FRSLGEQEEVEFECQRTSRGL 96
Query: 172 EAINVTGPNGIPVQGA 187
EA V+ +G QG+
Sbjct: 97 EATRVSSRHGGSCQGS 112
>sp|P57407|CSPC_BUCAI Cold shock-like protein CspC OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=cspC PE=3 SV=2
Length = 69
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 42/67 (62%), Gaps = 4/67 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
++G VK+++ +GFGFIT D +D+FVH SSI F++L G+ V+F I G+K
Sbjct: 4 IKGQVKWFNESKGFGFITPSDGSKDVFVHFSSIQGNG----FKTLTEGQNVEFEIQDGQK 59
Query: 69 DIEAINV 75
A+NV
Sbjct: 60 GPAAVNV 66
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 42/67 (62%), Gaps = 4/67 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
++G VK+++ +GFGFIT D +D+FVH SSI F++L G+ V+F I G+K
Sbjct: 4 IKGQVKWFNESKGFGFITPSDGSKDVFVHFSSIQGNG----FKTLTEGQNVEFEIQDGQK 59
Query: 170 DIEAINV 176
A+NV
Sbjct: 60 GPAAVNV 66
>sp|P63238|CSPE_BUCAP Cold shock-like protein CspE OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=cspE PE=3 SV=2
Length = 69
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Query: 6 IHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGV 65
+ ++G VK+++ +GFGFIT D +D+FVH S+I F++L G+ V+F I
Sbjct: 1 MSKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQSNG----FKTLAEGQSVEFEITE 56
Query: 66 GKKDIEAINV 75
G K A NV
Sbjct: 57 GAKGPSAANV 66
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 4/67 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
++G VK+++ +GFGFIT D +D+FVH S+I F++L G+ V+F I G K
Sbjct: 4 IKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQSNG----FKTLAEGQSVEFEITEGAK 59
Query: 170 DIEAINV 176
A NV
Sbjct: 60 GPSAANV 66
>sp|P63237|CSPE_BUCAI Cold shock-like protein CspE OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=cspE PE=3 SV=2
Length = 69
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Query: 6 IHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGV 65
+ ++G VK+++ +GFGFIT D +D+FVH S+I F++L G+ V+F I
Sbjct: 1 MSKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQSNG----FKTLAEGQSVEFEITE 56
Query: 66 GKKDIEAINV 75
G K A NV
Sbjct: 57 GAKGPSAANV 66
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 4/67 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
++G VK+++ +GFGFIT D +D+FVH S+I F++L G+ V+F I G K
Sbjct: 4 IKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQSNG----FKTLAEGQSVEFEITEGAK 59
Query: 170 DIEAINV 176
A NV
Sbjct: 60 GPSAANV 66
>sp|P36995|CSPB_ECOLI Cold shock-like protein CspB OS=Escherichia coli (strain K12)
GN=cspB PE=2 SV=1
Length = 71
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 42/67 (62%), Gaps = 4/67 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+ G+VK++++ +GFGFI+ +D +D+FVH S+I N + F+ G+ V F+I G K
Sbjct: 5 MTGLVKWFNADKGFGFISPVDGSKDVFVHFSAIQNDNYRTLFE----GQKVTFSIESGAK 60
Query: 69 DIEAINV 75
A NV
Sbjct: 61 GPAAANV 67
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 42/67 (62%), Gaps = 4/67 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+ G+VK++++ +GFGFI+ +D +D+FVH S+I N + F+ G+ V F+I G K
Sbjct: 5 MTGLVKWFNADKGFGFISPVDGSKDVFVHFSAIQNDNYRTLFE----GQKVTFSIESGAK 60
Query: 170 DIEAINV 176
A NV
Sbjct: 61 GPAAANV 67
>sp|Q89A90|CSPE_BUCBP Cold shock-like protein CspE OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=cspE PE=3 SV=3
Length = 69
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Query: 6 IHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGV 65
+ ++G VK+++ +GFGFIT D +D+FVH S+I F++L G+ V+F I
Sbjct: 1 MSKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQSNG----FKTLSEGQSVEFEITE 56
Query: 66 GKKDIEAINV 75
G K A NV
Sbjct: 57 GAKGPSAANV 66
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 4/67 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
++G VK+++ +GFGFIT D +D+FVH S+I F++L G+ V+F I G K
Sbjct: 4 IKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQSNG----FKTLSEGQSVEFEITEGAK 59
Query: 170 DIEAINV 176
A NV
Sbjct: 60 GPSAANV 66
>sp|P0A9Y4|CSPA_SHIFL Cold shock protein CspA OS=Shigella flexneri GN=cspA PE=3 SV=2
Length = 70
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+ GIVK++++ +GFGFIT D +D+FVH S+I ++SL G+ V F I G K
Sbjct: 5 MTGIVKWFNADKGFGFITPDDGSKDVFVHFSAI----QNDGYKSLDEGQKVSFTIESGAK 60
Query: 69 DIEAINVT 76
A NVT
Sbjct: 61 GPAAGNVT 68
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+ GIVK++++ +GFGFIT D +D+FVH S+I ++SL G+ V F I G K
Sbjct: 5 MTGIVKWFNADKGFGFITPDDGSKDVFVHFSAI----QNDGYKSLDEGQKVSFTIESGAK 60
Query: 170 DIEAINVT 177
A NVT
Sbjct: 61 GPAAGNVT 68
>sp|P0A9Y2|CSPA_SALTY Cold shock protein CspA OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=cspA PE=3 SV=2
Length = 70
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+ GIVK++++ +GFGFIT D +D+FVH S+I ++SL G+ V F I G K
Sbjct: 5 MTGIVKWFNADKGFGFITPDDGSKDVFVHFSAI----QNDGYKSLDEGQKVSFTIESGAK 60
Query: 69 DIEAINVT 76
A NVT
Sbjct: 61 GPAAGNVT 68
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+ GIVK++++ +GFGFIT D +D+FVH S+I ++SL G+ V F I G K
Sbjct: 5 MTGIVKWFNADKGFGFITPDDGSKDVFVHFSAI----QNDGYKSLDEGQKVSFTIESGAK 60
Query: 170 DIEAINVT 177
A NVT
Sbjct: 61 GPAAGNVT 68
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.141 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,235,673
Number of Sequences: 539616
Number of extensions: 3154502
Number of successful extensions: 7247
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 63
Number of HSP's that attempted gapping in prelim test: 6855
Number of HSP's gapped (non-prelim): 399
length of query: 191
length of database: 191,569,459
effective HSP length: 111
effective length of query: 80
effective length of database: 131,672,083
effective search space: 10533766640
effective search space used: 10533766640
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)