Query psy9900
Match_columns 191
No_of_seqs 228 out of 1917
Neff 7.6
Searched_HMMs 29240
Date Fri Aug 16 22:33:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9900.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9900hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulj_A LIN28B, DNA-binding pro 99.9 6.6E-26 2.3E-30 158.7 7.7 78 107-188 6-90 (90)
2 1h95_A CSD, Y-box binding prot 99.9 1.5E-25 5.1E-30 153.8 8.5 78 1-78 1-78 (79)
3 3ulj_A LIN28B, DNA-binding pro 99.9 1.1E-24 3.9E-29 152.4 7.5 77 6-86 6-89 (90)
4 1h95_A CSD, Y-box binding prot 99.9 2.3E-24 7.9E-29 147.8 8.7 76 105-180 4-79 (79)
5 3i2z_B RNA chaperone, negative 99.9 1.3E-23 4.4E-28 141.3 9.1 69 5-77 2-70 (71)
6 3cam_A Cold-shock domain famil 99.9 1.5E-23 5.2E-28 139.4 8.8 66 8-77 1-66 (67)
7 3cam_A Cold-shock domain famil 99.9 4E-23 1.4E-27 137.4 9.1 66 110-179 2-67 (67)
8 3i2z_B RNA chaperone, negative 99.9 9.8E-23 3.4E-27 137.0 9.2 67 109-179 5-71 (71)
9 1c9o_A CSPB, cold-shock protei 99.9 6.3E-23 2.1E-27 136.1 8.0 65 8-77 1-65 (66)
10 3a0j_A Cold shock protein; OB- 99.9 1E-22 3.5E-27 137.6 8.4 66 8-78 1-68 (73)
11 1c9o_A CSPB, cold-shock protei 99.9 1.5E-22 5.2E-27 134.2 8.0 65 110-179 2-66 (66)
12 3ts2_A Protein LIN-28 homolog 99.9 1.1E-22 3.7E-27 155.1 8.0 80 108-191 8-94 (148)
13 2kcm_A Cold shock domain famil 99.9 1.5E-22 5.3E-27 136.8 7.6 67 110-181 1-68 (74)
14 3a0j_A Cold shock protein; OB- 99.9 3.1E-22 1.1E-26 135.2 8.6 67 110-181 2-70 (73)
15 2kcm_A Cold shock domain famil 99.9 1.7E-22 5.8E-27 136.6 7.2 65 9-78 1-66 (74)
16 1g6p_A Cold shock protein TMCS 99.9 2.1E-22 7.2E-27 133.5 6.8 64 9-77 1-64 (66)
17 2lss_A Cold shock-like protein 99.8 8.4E-24 2.9E-28 141.8 0.0 69 5-77 1-69 (70)
18 1g6p_A Cold shock protein TMCS 99.9 2.1E-22 7.3E-27 133.5 6.6 66 110-180 1-66 (66)
19 2k5n_A Putative cold-shock pro 99.9 9.9E-22 3.4E-26 132.9 8.7 67 108-181 1-67 (74)
20 2k5n_A Putative cold-shock pro 99.9 1.1E-21 3.8E-26 132.6 8.6 65 8-79 2-66 (74)
21 2lss_A Cold shock-like protein 99.8 3.7E-23 1.2E-27 138.7 0.0 68 107-178 2-69 (70)
22 3ts2_A Protein LIN-28 homolog 99.8 1.5E-21 5E-26 148.8 7.9 79 7-89 8-93 (148)
23 1wfq_A UNR protein; beta-barre 99.8 8.6E-21 3E-25 132.6 8.8 69 106-181 15-85 (89)
24 1wfq_A UNR protein; beta-barre 99.8 7.9E-21 2.7E-25 132.8 8.0 68 5-79 15-84 (89)
25 2yty_A Cold shock domain-conta 99.8 1.1E-20 3.8E-25 131.9 6.1 67 108-181 17-84 (88)
26 3aqq_A Calcium-regulated heat 99.8 5.1E-20 1.7E-24 139.4 9.6 72 107-184 60-134 (147)
27 3aqq_A Calcium-regulated heat 99.8 9.5E-20 3.3E-24 137.9 8.7 70 7-82 61-133 (147)
28 2ytx_A Cold shock domain-conta 99.8 9.4E-20 3.2E-24 129.4 7.7 69 108-183 17-85 (97)
29 2yty_A Cold shock domain-conta 99.8 4.9E-20 1.7E-24 128.6 5.7 67 6-79 16-83 (88)
30 1x65_A UNR protein; cell-free 99.8 4.7E-20 1.6E-24 128.8 4.2 67 108-182 7-76 (89)
31 2ytx_A Cold shock domain-conta 99.8 6.3E-19 2.2E-23 125.1 7.9 68 6-80 16-83 (97)
32 1x65_A UNR protein; cell-free 99.8 2.4E-19 8.2E-24 125.2 2.7 66 6-79 6-74 (89)
33 2ytv_A Cold shock domain-conta 99.7 2.4E-18 8.1E-23 117.7 4.8 65 108-180 7-74 (79)
34 2ytv_A Cold shock domain-conta 99.7 3.5E-18 1.2E-22 116.8 5.7 65 7-79 7-74 (79)
35 2bh8_A 1B11; transcription, mo 99.6 8.7E-16 3E-20 109.7 7.2 64 3-70 11-77 (101)
36 2bh8_A 1B11; transcription, mo 99.5 2.7E-14 9.2E-19 101.9 7.4 60 107-170 14-76 (101)
37 2id0_A Exoribonuclease 2; RNAs 98.4 1.2E-06 4E-11 80.5 10.9 128 8-181 21-153 (644)
38 3go5_A Multidomain protein wit 97.8 0.00084 2.9E-08 55.7 15.7 126 1-171 2-129 (285)
39 3go5_A Multidomain protein wit 97.6 0.0012 4.2E-08 54.7 13.4 143 7-180 71-218 (285)
40 1a62_A RHO; transcription term 97.5 0.00036 1.2E-08 51.4 7.1 69 110-187 51-127 (130)
41 2vnu_D Exosome complex exonucl 97.4 0.0011 3.9E-08 61.8 11.2 152 8-180 32-231 (760)
42 1a62_A RHO; transcription term 97.0 0.00079 2.7E-08 49.5 5.1 64 9-81 51-122 (130)
43 2wp8_J Exosome complex exonucl 96.8 0.0082 2.8E-07 57.5 10.8 152 8-180 249-448 (977)
44 2id0_A Exoribonuclease 2; RNAs 95.8 0.013 4.4E-07 53.7 6.1 62 109-182 21-82 (644)
45 3l0o_A Transcription terminati 93.5 0.19 6.4E-06 43.6 7.2 69 110-187 58-134 (427)
46 2k52_A Uncharacterized protein 92.1 0.29 1E-05 32.1 5.2 56 3-66 3-59 (80)
47 2cqo_A Nucleolar protein of 40 91.7 0.31 1.1E-05 34.8 5.3 57 7-66 24-81 (119)
48 2k52_A Uncharacterized protein 91.5 1.4 4.8E-05 28.7 8.1 54 108-168 7-60 (80)
49 2eqs_A ATP-dependent RNA helic 90.3 3.2 0.00011 28.4 9.3 63 105-170 11-77 (103)
50 2khi_A 30S ribosomal protein S 89.6 3.9 0.00013 28.5 10.3 75 106-183 30-107 (115)
51 2k4k_A GSP13, general stress p 89.3 1.4 4.9E-05 31.6 7.1 59 107-168 8-66 (130)
52 3l0o_A Transcription terminati 89.1 0.73 2.5E-05 40.0 6.2 64 9-81 58-129 (427)
53 2khi_A 30S ribosomal protein S 87.9 4.5 0.00015 28.2 8.9 58 7-67 32-90 (115)
54 2bx2_L Ribonuclease E, RNAse E 87.5 3.4 0.00012 36.7 9.6 63 107-170 46-117 (517)
55 2k4k_A GSP13, general stress p 87.4 1 3.5E-05 32.4 5.3 57 7-66 9-65 (130)
56 2khj_A 30S ribosomal protein S 87.1 2.6 9.1E-05 29.0 7.1 61 106-169 31-91 (109)
57 3ice_A Transcription terminati 86.1 0.64 2.2E-05 40.3 4.1 63 110-181 54-124 (422)
58 2b8k_G B16, DNA-directed RNA p 85.8 1.7 5.9E-05 34.1 6.2 58 4-65 82-149 (215)
59 2eqs_A ATP-dependent RNA helic 85.6 3.3 0.00011 28.3 6.9 61 6-69 13-77 (103)
60 2cqo_A Nucleolar protein of 40 85.2 7.8 0.00027 27.2 10.8 60 106-168 22-82 (119)
61 1y14_B B16, RPB7, DNA-directed 84.0 1.4 4.8E-05 33.1 4.8 57 5-65 83-149 (171)
62 2khj_A 30S ribosomal protein S 83.7 1.7 5.8E-05 30.0 4.8 58 7-67 33-90 (109)
63 2bx2_L Ribonuclease E, RNAse E 83.6 2.1 7E-05 38.2 6.3 64 7-71 47-119 (517)
64 3ice_A Transcription terminati 83.0 0.71 2.4E-05 40.0 3.0 52 9-69 54-110 (422)
65 1q8k_A Eukaryotic translation 82.8 7.5 0.00026 32.2 9.1 61 106-169 13-75 (308)
66 2qcp_X Cation efflux system pr 82.4 1.4 4.9E-05 29.1 3.7 61 109-177 9-77 (80)
67 1y14_B B16, RPB7, DNA-directed 82.0 3.4 0.00012 30.9 6.2 58 107-168 84-151 (171)
68 2vb2_X Copper protein, cation 82.0 1.5 5E-05 29.6 3.7 61 109-177 17-85 (88)
69 2b8k_G B16, DNA-directed RNA p 81.8 4.9 0.00017 31.5 7.2 59 106-168 83-151 (215)
70 2l55_A SILB,silver efflux prot 81.8 2.1 7.1E-05 28.5 4.3 61 110-180 6-75 (82)
71 2a19_A EIF-2- alpha, eukaryoti 81.0 3.6 0.00012 31.1 6.0 58 6-66 16-75 (175)
72 2a19_A EIF-2- alpha, eukaryoti 80.2 7.5 0.00026 29.3 7.6 60 106-168 15-76 (175)
73 2vnu_D Exosome complex exonucl 80.0 2.4 8.3E-05 39.4 5.7 49 108-167 31-82 (760)
74 1luz_A Protein K3, protein K2; 79.0 0.55 1.9E-05 31.6 0.7 58 4-66 10-70 (88)
75 1kl9_A Eukaryotic translation 77.2 9.9 0.00034 28.9 7.5 60 106-168 15-76 (182)
76 1kl9_A Eukaryotic translation 76.3 4.9 0.00017 30.7 5.5 59 6-67 16-76 (182)
77 3aev_A Translation initiation 75.9 15 0.00053 29.7 8.7 59 107-168 12-72 (275)
78 1q8k_A Eukaryotic translation 75.8 7.7 0.00026 32.1 7.0 59 6-67 14-74 (308)
79 2wp8_J Exosome complex exonucl 71.3 5.7 0.00019 38.1 5.7 48 108-166 248-298 (977)
80 1go3_E DNA-directed RNA polyme 70.6 24 0.00082 26.4 8.3 57 108-168 83-150 (187)
81 2qcp_X Cation efflux system pr 69.7 5.4 0.00018 26.2 3.8 60 8-75 9-76 (80)
82 3aev_A Translation initiation 69.0 12 0.00042 30.3 6.6 58 6-66 12-71 (275)
83 3h0g_G DNA-directed RNA polyme 68.8 5.4 0.00019 29.9 4.2 58 107-168 85-152 (172)
84 2c35_B Human RPB7, DNA-directe 68.8 8.4 0.00029 28.7 5.2 59 106-168 81-151 (172)
85 2vb2_X Copper protein, cation 68.6 5.7 0.0002 26.6 3.8 60 8-75 17-84 (88)
86 1go3_E DNA-directed RNA polyme 68.4 10 0.00034 28.6 5.7 57 6-66 82-149 (187)
87 2c35_B Human RPB7, DNA-directe 68.2 4.4 0.00015 30.3 3.5 57 5-65 81-149 (172)
88 3cw2_C Translation initiation 67.6 7.5 0.00026 31.4 5.0 61 106-169 11-73 (266)
89 2l55_A SILB,silver efflux prot 67.1 11 0.00038 24.8 4.9 59 9-77 6-73 (82)
90 3h0g_G DNA-directed RNA polyme 66.1 3.3 0.00011 31.1 2.4 57 5-65 84-150 (172)
91 4ayb_E DNA-directed RNA polyme 63.1 34 0.0012 25.4 7.7 59 106-168 81-150 (180)
92 3m7n_A Putative uncharacterize 57.4 30 0.001 26.0 6.5 57 107-166 58-124 (179)
93 4ayb_E DNA-directed RNA polyme 57.2 25 0.00086 26.1 6.0 57 6-66 82-149 (180)
94 1wi5_A RRP5 protein homolog; S 55.9 47 0.0016 22.8 9.0 62 105-169 20-83 (119)
95 4hti_A Receptor-type tyrosine- 55.3 5.4 0.00019 27.5 1.7 44 19-76 8-71 (99)
96 3cw2_C Translation initiation 52.6 5.6 0.00019 32.2 1.7 59 6-67 12-72 (266)
97 3psi_A Transcription elongatio 46.0 59 0.002 31.9 7.9 60 106-168 902-962 (1219)
98 1hh2_P NUSA, N utilization sub 42.5 54 0.0019 27.4 6.3 51 7-67 136-186 (344)
99 1hh2_P NUSA, N utilization sub 41.5 59 0.002 27.2 6.3 52 107-168 135-186 (344)
100 3u7z_A Putative metal binding 41.5 44 0.0015 22.9 4.6 48 120-167 46-100 (101)
101 2je6_I RRP4, exosome complex R 40.5 79 0.0027 25.0 6.7 60 107-169 75-137 (251)
102 3psi_A Transcription elongatio 38.1 54 0.0018 32.2 6.2 57 7-66 904-961 (1219)
103 2ba0_A Archeal exosome RNA bin 36.5 1.5E+02 0.005 23.0 7.7 60 107-169 58-118 (229)
104 2je6_I RRP4, exosome complex R 36.4 95 0.0032 24.6 6.6 58 8-68 77-137 (251)
105 3bzc_A TEX; helix-turn-helix, 36.4 30 0.001 32.3 4.1 61 106-169 654-714 (785)
106 3m7n_A Putative uncharacterize 35.9 68 0.0023 23.9 5.4 55 8-65 60-124 (179)
107 3d2w_A TAR DNA-binding protein 33.8 30 0.001 22.2 2.8 19 11-29 36-57 (89)
108 2z0s_A Probable exosome comple 32.8 1.4E+02 0.0048 23.1 7.0 60 107-169 67-130 (235)
109 3fkh_A Putative pyridoxamine 5 32.6 59 0.002 23.1 4.4 56 105-168 17-75 (138)
110 3bzc_A TEX; helix-turn-helix, 32.5 23 0.00078 33.1 2.6 58 7-67 656-713 (785)
111 1yfb_A Transition state regula 31.6 53 0.0018 20.0 3.4 40 121-167 10-49 (59)
112 3cdi_A Polynucleotide phosphor 30.9 10 0.00035 35.0 0.0 57 7-66 629-685 (723)
113 1wi5_A RRP5 protein homolog; S 30.9 1.3E+02 0.0043 20.5 9.4 56 7-68 23-83 (119)
114 1wid_A DNA-binding protein RAV 30.3 81 0.0028 22.2 4.8 37 139-181 83-119 (130)
115 3cdi_A Polynucleotide phosphor 28.6 12 0.00041 34.6 0.0 60 108-170 629-689 (723)
116 2ckz_B C25, DNA-directed RNA p 27.6 1.2E+02 0.0041 23.4 5.7 62 1-65 77-152 (218)
117 2xnq_A Nuclear polyadenylated 27.3 34 0.0012 22.3 2.1 20 10-29 47-66 (97)
118 4aid_A Polyribonucleotide nucl 26.1 14 0.00048 34.2 0.0 58 108-168 639-696 (726)
119 2ba0_A Archeal exosome RNA bin 25.9 2.2E+02 0.0075 22.0 7.0 58 8-68 60-118 (229)
120 1j6q_A Cytochrome C maturation 25.7 1.9E+02 0.0064 20.8 7.4 62 112-180 44-106 (136)
121 2z0s_A Probable exosome comple 25.7 1.9E+02 0.0064 22.4 6.6 58 8-68 69-130 (235)
122 2cpd_A Apobec-1 stimulating pr 24.3 39 0.0013 21.8 2.0 19 11-29 42-60 (99)
123 4aid_A Polyribonucleotide nucl 23.9 17 0.00056 33.7 0.0 58 7-67 639-696 (726)
124 3ayh_B DNA-directed RNA polyme 23.6 1.6E+02 0.0056 22.2 5.7 60 2-65 78-156 (203)
125 2ja9_A Exosome complex exonucl 23.4 1.7E+02 0.0057 21.8 5.6 57 8-68 10-67 (175)
126 1e3p_A Guanosine pentaphosphat 23.0 17 0.00057 33.9 -0.2 61 107-170 668-733 (757)
127 2wbr_A GW182, gawky, LD47780P; 22.6 59 0.002 21.7 2.6 19 11-29 32-52 (89)
128 2ja9_A Exosome complex exonucl 21.1 2.6E+02 0.0088 20.7 7.2 58 108-169 9-67 (175)
129 2e5q_A PHD finger protein 19; 21.0 1.4E+02 0.0047 18.6 3.8 36 109-145 23-58 (63)
130 3tuf_B Stage II sporulation pr 20.9 92 0.0031 24.6 3.8 48 8-59 99-149 (245)
131 1e3p_A Guanosine pentaphosphat 20.8 12 0.00042 34.7 -1.5 58 6-66 668-729 (757)
132 2ylb_A Protein HFQ; RNA-bindin 20.3 42 0.0014 21.6 1.4 33 6-43 31-63 (74)
133 3h43_A Proteasome-activating n 20.1 1.3E+02 0.0044 19.6 3.9 45 110-162 20-64 (85)
No 1
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=99.93 E-value=6.6e-26 Score=158.68 Aligned_cols=78 Identities=40% Similarity=0.667 Sum_probs=71.7
Q ss_pred ceeeeeeEEEeecCCCceeEE-------eCCCCCcEEEeccchhccCcccccccCCCCCEEEEEEEEcCCCceeEEeecC
Q psy9900 107 VHTVRGIVKFYDSKRGFGFIT-------RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGP 179 (191)
Q Consensus 107 ~~~~~G~Vk~~~~~kgfGFI~-------~~d~~~dvF~h~s~~~~~~~~~~~~~l~~G~~V~f~i~~~~kg~~A~~V~~~ 179 (191)
..+.+|+|||||..||||||+ ++++++|||||+|+|... +++.|.+|++|+|++.+++||++|++|+.+
T Consensus 6 ~~r~tG~VKWFn~~KGfGFI~~~~~~~~p~dgg~DvFVH~s~i~~~----g~~~L~eG~~V~f~v~~g~kG~~A~~Vtg~ 81 (90)
T 3ulj_A 6 VLRGSGHCKWFNVRMGFGFISMTSREGSPLENPVDVFVHQSKLYME----GFRSLKEGEPVEFTFKKSSKGFESLRVTGP 81 (90)
T ss_dssp CEEEEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEEEGGGBCCS----SSCCCCTTCEEEEEEEEETTEEEEEEEECG
T ss_pred ccccceEEEEeeCCCCeEEeEecCcCcCCCCCCccEEEEeehhccc----CCCccCCCCEEEEEEEECCCCcEEEEEECC
Confidence 457899999999999999998 456678999999999874 689999999999999999999999999999
Q ss_pred CCCCCCCCC
Q psy9900 180 NGIPVQGAP 188 (191)
Q Consensus 180 ~~~~~~~~~ 188 (191)
+|+|+++++
T Consensus 82 ~G~p~~gse 90 (90)
T 3ulj_A 82 GGNPCLGNE 90 (90)
T ss_dssp GGCCCCCCC
T ss_pred CCccccCCC
Confidence 999999985
No 2
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=99.92 E-value=1.5e-25 Score=153.77 Aligned_cols=78 Identities=49% Similarity=0.856 Sum_probs=72.0
Q ss_pred CceeceeccceEEEEeeCCCCeeEEEeCCCCccEEEEeeeheecCCCCCcccCCCCCEEEEEEEEcCCCceeeEeecC
Q psy9900 1 MTKFEIHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGP 78 (191)
Q Consensus 1 ~~~~~~~~~~G~vk~~~~~kGfGFI~~~~~~~dvFvh~s~l~~~~~~~g~~~l~~Gd~V~f~~~~~~~g~~A~~v~~~ 78 (191)
|+++++.+.+|+|||||..||||||.++++++|||||+|+|....++.|++.|.+|++|+|++..+++|++|.+|+.+
T Consensus 1 ~~~~~~~~~~G~Vkwfn~~kGfGFI~~~~gg~DvFvH~s~i~~~~~~~g~~~l~~G~~V~f~~~~~~kG~~A~~V~~p 78 (79)
T 1h95_A 1 MKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGP 78 (79)
T ss_dssp CCSCCEEEEEEEEEEEETTTTEEEEEEGGGTEEEEEEGGGBCSCCCSCCSCSCCSSCEEEEEEEECSSSEEEESBCCC
T ss_pred CccccccccceEEEEEECCCCcEEEecCCCCccEEEEhHHccccccccccccCCCCCEEEEEEEECCCCceeEEEECc
Confidence 889999999999999999999999999998899999999998754344789999999999999999999999999875
No 3
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=99.91 E-value=1.1e-24 Score=152.40 Aligned_cols=77 Identities=39% Similarity=0.677 Sum_probs=70.0
Q ss_pred eeccceEEEEeeCCCCeeEEE-------eCCCCccEEEEeeeheecCCCCCcccCCCCCEEEEEEEEcCCCceeeEeecC
Q psy9900 6 IHTVRGIVKFYDSKRGFGFIT-------RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGP 78 (191)
Q Consensus 6 ~~~~~G~vk~~~~~kGfGFI~-------~~~~~~dvFvh~s~l~~~~~~~g~~~l~~Gd~V~f~~~~~~~g~~A~~v~~~ 78 (191)
..|.+|+|||||..||||||. ++++++|||||+|+|... |++.|.+|++|+|++..+++|++|++|+.+
T Consensus 6 ~~r~tG~VKWFn~~KGfGFI~~~~~~~~p~dgg~DvFVH~s~i~~~----g~~~L~eG~~V~f~v~~g~kG~~A~~Vtg~ 81 (90)
T 3ulj_A 6 VLRGSGHCKWFNVRMGFGFISMTSREGSPLENPVDVFVHQSKLYME----GFRSLKEGEPVEFTFKKSSKGFESLRVTGP 81 (90)
T ss_dssp CEEEEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEEEGGGBCCS----SSCCCCTTCEEEEEEEEETTEEEEEEEECG
T ss_pred ccccceEEEEeeCCCCeEEeEecCcCcCCCCCCccEEEEeehhccc----CCCccCCCCEEEEEEEECCCCcEEEEEECC
Confidence 357899999999999999997 456678999999999876 799999999999999999999999999999
Q ss_pred CCCCccCC
Q psy9900 79 NGIPVQGA 86 (191)
Q Consensus 79 ~~~~~~~~ 86 (191)
++.|+.++
T Consensus 82 ~G~p~~gs 89 (90)
T 3ulj_A 82 GGNPCLGN 89 (90)
T ss_dssp GGCCCCCC
T ss_pred CCccccCC
Confidence 99888764
No 4
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=99.91 E-value=2.3e-24 Score=147.80 Aligned_cols=76 Identities=47% Similarity=0.851 Sum_probs=69.5
Q ss_pred ccceeeeeeEEEeecCCCceeEEeCCCCCcEEEeccchhccCcccccccCCCCCEEEEEEEEcCCCceeEEeecCC
Q psy9900 105 PAVHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPN 180 (191)
Q Consensus 105 ~~~~~~~G~Vk~~~~~kgfGFI~~~d~~~dvF~h~s~~~~~~~~~~~~~l~~G~~V~f~i~~~~kg~~A~~V~~~~ 180 (191)
.+..+.+|+|||||..||||||+++++++|||||+|+|...+++.+++.|.+|+.|+|++.++++|++|++|++++
T Consensus 4 ~~~~~~~G~Vkwfn~~kGfGFI~~~~gg~DvFvH~s~i~~~~~~~g~~~l~~G~~V~f~~~~~~kG~~A~~V~~p~ 79 (79)
T 1h95_A 4 VIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPG 79 (79)
T ss_dssp CCEEEEEEEEEEEETTTTEEEEEEGGGTEEEEEEGGGBCSCCCSCCSCSCCSSCEEEEEEEECSSSEEEESBCCCC
T ss_pred ccccccceEEEEEECCCCcEEEecCCCCccEEEEhHHccccccccccccCCCCCEEEEEEEECCCCceeEEEECcC
Confidence 4566789999999999999999999988999999999998655567899999999999999999999999999875
No 5
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=99.90 E-value=1.3e-23 Score=141.28 Aligned_cols=69 Identities=41% Similarity=0.676 Sum_probs=62.8
Q ss_pred ceeccceEEEEeeCCCCeeEEEeCCCCccEEEEeeeheecCCCCCcccCCCCCEEEEEEEEcCCCceeeEeec
Q psy9900 5 EIHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTG 77 (191)
Q Consensus 5 ~~~~~~G~vk~~~~~kGfGFI~~~~~~~dvFvh~s~l~~~~~~~g~~~l~~Gd~V~f~~~~~~~g~~A~~v~~ 77 (191)
+|.+.+|+|||||..||||||.++++++|||||+|+|... |++.|.+|++|+|++..+++|++|.+|+.
T Consensus 2 ~m~~~~G~Vk~fn~~kGfGFI~~~~g~~dvFvH~s~i~~~----g~~~l~~G~~V~f~~~~~~kG~~A~~V~~ 70 (71)
T 3i2z_B 2 HMSKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTN----GFKTLAEGQRVEFEITNGAKGPSAANVTA 70 (71)
T ss_dssp ---CEEEEEEEEETTTTEEEEEETTCCCCEEEEGGGBCCS----SCCCCCTTCEEEEEEEEETTEEEEEEEEE
T ss_pred ccccccEEEEEEECCCCcEEEecCCCCccEEEEhHHcccc----cCcCCCCCCEEEEEEEECCCCCEeEEEEe
Confidence 3568999999999999999999999889999999999976 68899999999999999999999999975
No 6
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=99.90 E-value=1.5e-23 Score=139.37 Aligned_cols=66 Identities=38% Similarity=0.644 Sum_probs=61.8
Q ss_pred ccceEEEEeeCCCCeeEEEeCCCCccEEEEeeeheecCCCCCcccCCCCCEEEEEEEEcCCCceeeEeec
Q psy9900 8 TVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTG 77 (191)
Q Consensus 8 ~~~G~vk~~~~~kGfGFI~~~~~~~dvFvh~s~l~~~~~~~g~~~l~~Gd~V~f~~~~~~~g~~A~~v~~ 77 (191)
|.+|+|||||..||||||.++++++|||||+|+|... |++.|.+|++|+|++..+++|++|.+|..
T Consensus 1 m~~G~Vk~fn~~kGfGFI~~~~gg~dvFvH~s~i~~~----g~~~l~~G~~V~f~~~~~~kG~~A~~V~~ 66 (67)
T 3cam_A 1 MATGIVKWFNDAKGFGFITPDEGGEDLFAHFSAINME----GFKTLKEGQRVSFDVTTGPKGKQAANIQA 66 (67)
T ss_dssp CEEEEEEEEETTTTEEEEEETTSCCCEEEEGGGBCGG----GGSSCCTTCEEEEEEEEETTEEEEEEEEE
T ss_pred CCCEEEEEEECCCCeEEEecCCCCccEEEEHHHcccc----CCCCCCCCCEEEEEEEECCCCccceEEEe
Confidence 3589999999999999999999889999999999976 78999999999999999999999999974
No 7
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=99.89 E-value=4e-23 Score=137.36 Aligned_cols=66 Identities=38% Similarity=0.648 Sum_probs=61.7
Q ss_pred eeeeEEEeecCCCceeEEeCCCCCcEEEeccchhccCcccccccCCCCCEEEEEEEEcCCCceeEEeecC
Q psy9900 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGP 179 (191)
Q Consensus 110 ~~G~Vk~~~~~kgfGFI~~~d~~~dvF~h~s~~~~~~~~~~~~~l~~G~~V~f~i~~~~kg~~A~~V~~~ 179 (191)
.+|+|||||..||||||+++++++|||||+|+|... +++.|.+|++|+|++.++++|++|++|+.+
T Consensus 2 ~~G~Vk~fn~~kGfGFI~~~~gg~dvFvH~s~i~~~----g~~~l~~G~~V~f~~~~~~kG~~A~~V~~~ 67 (67)
T 3cam_A 2 ATGIVKWFNDAKGFGFITPDEGGEDLFAHFSAINME----GFKTLKEGQRVSFDVTTGPKGKQAANIQAA 67 (67)
T ss_dssp EEEEEEEEETTTTEEEEEETTSCCCEEEEGGGBCGG----GGSSCCTTCEEEEEEEEETTEEEEEEEEEC
T ss_pred CCEEEEEEECCCCeEEEecCCCCccEEEEHHHcccc----CCCCCCCCCEEEEEEEECCCCccceEEEeC
Confidence 479999999999999999999889999999999874 588999999999999999999999999863
No 8
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=99.88 E-value=9.8e-23 Score=136.97 Aligned_cols=67 Identities=42% Similarity=0.671 Sum_probs=62.7
Q ss_pred eeeeeEEEeecCCCceeEEeCCCCCcEEEeccchhccCcccccccCCCCCEEEEEEEEcCCCceeEEeecC
Q psy9900 109 TVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGP 179 (191)
Q Consensus 109 ~~~G~Vk~~~~~kgfGFI~~~d~~~dvF~h~s~~~~~~~~~~~~~l~~G~~V~f~i~~~~kg~~A~~V~~~ 179 (191)
+.+|+|||||..||||||+++++++|||||+++|... +++.|.+||+|+|++.++++|++|++|+++
T Consensus 5 ~~~G~Vk~fn~~kGfGFI~~~~g~~dvFvH~s~i~~~----g~~~l~~G~~V~f~~~~~~kG~~A~~V~~~ 71 (71)
T 3i2z_B 5 KIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTN----GFKTLAEGQRVEFEITNGAKGPSAANVTAL 71 (71)
T ss_dssp CEEEEEEEEETTTTEEEEEETTCCCCEEEEGGGBCCS----SCCCCCTTCEEEEEEEEETTEEEEEEEEEC
T ss_pred cccEEEEEEECCCCcEEEecCCCCccEEEEhHHcccc----cCcCCCCCCEEEEEEEECCCCCEeEEEEeC
Confidence 5789999999999999999999889999999999864 578999999999999999999999999863
No 9
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=99.88 E-value=6.3e-23 Score=136.08 Aligned_cols=65 Identities=35% Similarity=0.596 Sum_probs=60.8
Q ss_pred ccceEEEEeeCCCCeeEEEeCCCCccEEEEeeeheecCCCCCcccCCCCCEEEEEEEEcCCCceeeEeec
Q psy9900 8 TVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTG 77 (191)
Q Consensus 8 ~~~G~vk~~~~~kGfGFI~~~~~~~dvFvh~s~l~~~~~~~g~~~l~~Gd~V~f~~~~~~~g~~A~~v~~ 77 (191)
|.+|+|||||..||||||.++++ +|||||+|+|... |++.|.+|++|+|++..+++|++|.+|..
T Consensus 1 m~~G~Vk~fn~~kGfGFI~~~~g-~dvFvH~s~i~~~----g~~~l~~G~~V~f~~~~~~kG~~A~~V~~ 65 (66)
T 1c9o_A 1 MQRGKVKWFNNEKGYGFIEVEGG-SDVFVHFTAIQGE----GFKTLEEGQEVSFEIVQGNRGPQAANVVK 65 (66)
T ss_dssp CEEEEEEEEETTTTEEEEEETTE-EEEEEEGGGBCSS----SCCCCCTTCEEEEEEEEETTEEEEEEEEE
T ss_pred CCceEEEEEECCCCeEEEecCCC-ccEEEEHHHcccc----CCCCCCCCCEEEEEEEECCCCcEeEEEEe
Confidence 35899999999999999999997 9999999999976 78999999999999999999999999974
No 10
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=99.88 E-value=1e-22 Score=137.62 Aligned_cols=66 Identities=38% Similarity=0.707 Sum_probs=61.4
Q ss_pred ccceEEEEeeCCCCeeEEEeCCCCccEEEEeeeheecCCCCCcccCCCCCEEEEEEEEcC--CCceeeEeecC
Q psy9900 8 TVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGK--KDIEAINVTGP 78 (191)
Q Consensus 8 ~~~G~vk~~~~~kGfGFI~~~~~~~dvFvh~s~l~~~~~~~g~~~l~~Gd~V~f~~~~~~--~g~~A~~v~~~ 78 (191)
|.+|+|||||..||||||.++++ +|||||+|+|... |++.|.+|++|+|++..++ +|++|.+|..+
T Consensus 1 m~~G~Vk~fn~~kGfGFI~~~~g-~dvFvH~s~i~~~----g~~~l~~G~~V~f~~~~~~~~kG~~A~~V~~~ 68 (73)
T 3a0j_A 1 MQKGRVKWFNAEKGYGFIEREGD-TDVFVHYTAINAK----GFRTLNEGDIVTFDVEPGRNGKGPQAVNVTVV 68 (73)
T ss_dssp CEEEEEEEEETTTTEEEEECTTS-CCEEEEGGGBCSS----SCSSCCTTCEEEEEEECCSCCSSSEEEEEEEE
T ss_pred CCCEEEEEEECCCCEEEEecCCC-CcEEEEhhhcccc----CCCCCCCCCEEEEEEEECCCCCCCEEEEEEeC
Confidence 35899999999999999999986 9999999999976 7899999999999999999 89999999875
No 11
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=99.87 E-value=1.5e-22 Score=134.21 Aligned_cols=65 Identities=35% Similarity=0.588 Sum_probs=60.7
Q ss_pred eeeeEEEeecCCCceeEEeCCCCCcEEEeccchhccCcccccccCCCCCEEEEEEEEcCCCceeEEeecC
Q psy9900 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGP 179 (191)
Q Consensus 110 ~~G~Vk~~~~~kgfGFI~~~d~~~dvF~h~s~~~~~~~~~~~~~l~~G~~V~f~i~~~~kg~~A~~V~~~ 179 (191)
.+|+|||||..||||||+++++ +|||||+|+|... +++.|.+|++|+|++.++++|++|++|+++
T Consensus 2 ~~G~Vk~fn~~kGfGFI~~~~g-~dvFvH~s~i~~~----g~~~l~~G~~V~f~~~~~~kG~~A~~V~~~ 66 (66)
T 1c9o_A 2 QRGKVKWFNNEKGYGFIEVEGG-SDVFVHFTAIQGE----GFKTLEEGQEVSFEIVQGNRGPQAANVVKL 66 (66)
T ss_dssp EEEEEEEEETTTTEEEEEETTE-EEEEEEGGGBCSS----SCCCCCTTCEEEEEEEEETTEEEEEEEEEC
T ss_pred CceEEEEEECCCCeEEEecCCC-ccEEEEHHHcccc----CCCCCCCCCEEEEEEEECCCCcEeEEEEeC
Confidence 5799999999999999999997 9999999999974 578999999999999999999999999864
No 12
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=99.87 E-value=1.1e-22 Score=155.08 Aligned_cols=80 Identities=38% Similarity=0.649 Sum_probs=74.1
Q ss_pred eeeeeeEEEeecCCCceeEEeC-------CCCCcEEEeccchhccCcccccccCCCCCEEEEEEEEcCCCceeEEeecCC
Q psy9900 108 HTVRGIVKFYDSKRGFGFITRL-------DNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPN 180 (191)
Q Consensus 108 ~~~~G~Vk~~~~~kgfGFI~~~-------d~~~dvF~h~s~~~~~~~~~~~~~l~~G~~V~f~i~~~~kg~~A~~V~~~~ 180 (191)
.+.+|+|||||..||||||+++ ++++|||||+++|... +++.|.+|+.|+|++.++++|++|++|+.++
T Consensus 8 ~~~~G~Vkwfn~~kGfGFI~~~~~~g~p~~~g~DvFvH~s~i~~~----g~~~l~eG~~V~f~~~~g~kG~~A~~V~~pg 83 (148)
T 3ts2_A 8 LHGAGICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHME----GFRSLKEGEAVEFTFKKSAKGLESIRVTGPG 83 (148)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEEEGGGBCSS----SSCCCCTTCEEEEEEEEETTEEEEEEEESGG
T ss_pred ccceeEEEEEECCCCeeEEeeCccccccCCCCccEEEEhHHhccc----CCccCCCCCEEEEEEEEccccchhhcccccC
Confidence 5679999999999999999987 4679999999999864 6899999999999999999999999999999
Q ss_pred CCCCCCCCCCC
Q psy9900 181 GIPVQGAPKVP 191 (191)
Q Consensus 181 ~~~~~~~~~~p 191 (191)
++++++++++|
T Consensus 84 g~pv~GS~rrp 94 (148)
T 3ts2_A 84 GVFCIGSERRP 94 (148)
T ss_dssp GCCCCCCTTSC
T ss_pred Ccccccccccc
Confidence 99999998776
No 13
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=99.87 E-value=1.5e-22 Score=136.82 Aligned_cols=67 Identities=28% Similarity=0.373 Sum_probs=62.2
Q ss_pred eeeeEEEeecCCCceeEEeCCCCCcEEEeccchh-ccCcccccccCCCCCEEEEEEEEcCCCceeEEeecCCC
Q psy9900 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIV-KMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNG 181 (191)
Q Consensus 110 ~~G~Vk~~~~~kgfGFI~~~d~~~dvF~h~s~~~-~~~~~~~~~~l~~G~~V~f~i~~~~kg~~A~~V~~~~~ 181 (191)
++|+|||||..||||||+++++ +|||||+|+|. .. +++.|.+|++|+|++.++++|++|++|+.++-
T Consensus 1 ~~G~Vkwfn~~KGfGFI~~~dG-~DvFvH~s~i~~~~----g~~~l~~G~~V~F~~~~g~kG~~A~~V~~~~~ 68 (74)
T 2kcm_A 1 MKGKVVSYLAAKKYGFIQGDDG-ESYFLHFSELLDKK----DEGKLVKGSMVHFDPTPTPKGLAAKAISLPLE 68 (74)
T ss_dssp CEEEEEEEETTTTEEEEEETTS-CEECCCGGGSSCSG----GGTTCCTTSEEEEEEECTTTSCEEEEEECCSC
T ss_pred CCEEEEEEECCCCEEEEecCCC-ceEEEEhhhcccCC----CCCCCCCCCEEEEEEEECCCCceeEEEEEcCc
Confidence 4799999999999999999997 99999999998 53 68999999999999999999999999998763
No 14
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=99.87 E-value=3.1e-22 Score=135.21 Aligned_cols=67 Identities=37% Similarity=0.696 Sum_probs=62.1
Q ss_pred eeeeEEEeecCCCceeEEeCCCCCcEEEeccchhccCcccccccCCCCCEEEEEEEEcC--CCceeEEeecCCC
Q psy9900 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGK--KDIEAINVTGPNG 181 (191)
Q Consensus 110 ~~G~Vk~~~~~kgfGFI~~~d~~~dvF~h~s~~~~~~~~~~~~~l~~G~~V~f~i~~~~--kg~~A~~V~~~~~ 181 (191)
.+|+|||||..||||||+++++ +|||||+|+|... +++.|.+|+.|+|++.+++ +|++|++|++++.
T Consensus 2 ~~G~Vk~fn~~kGfGFI~~~~g-~dvFvH~s~i~~~----g~~~l~~G~~V~f~~~~~~~~kG~~A~~V~~~~~ 70 (73)
T 3a0j_A 2 QKGRVKWFNAEKGYGFIEREGD-TDVFVHYTAINAK----GFRTLNEGDIVTFDVEPGRNGKGPQAVNVTVVEP 70 (73)
T ss_dssp EEEEEEEEETTTTEEEEECTTS-CCEEEEGGGBCSS----SCSSCCTTCEEEEEEECCSCCSSSEEEEEEEEEC
T ss_pred CCEEEEEEECCCCEEEEecCCC-CcEEEEhhhcccc----CCCCCCCCCEEEEEEEECCCCCCCEEEEEEeCCC
Confidence 5799999999999999999986 9999999999974 5889999999999999999 9999999998753
No 15
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=99.87 E-value=1.7e-22 Score=136.62 Aligned_cols=65 Identities=29% Similarity=0.404 Sum_probs=61.0
Q ss_pred cceEEEEeeCCCCeeEEEeCCCCccEEEEeeehe-ecCCCCCcccCCCCCEEEEEEEEcCCCceeeEeecC
Q psy9900 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIV-KMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGP 78 (191)
Q Consensus 9 ~~G~vk~~~~~kGfGFI~~~~~~~dvFvh~s~l~-~~~~~~g~~~l~~Gd~V~f~~~~~~~g~~A~~v~~~ 78 (191)
++|+|||||..||||||.++++ +|||||+|+|. .. |++.|.+|++|+|++..+++|++|.+|..+
T Consensus 1 ~~G~Vkwfn~~KGfGFI~~~dG-~DvFvH~s~i~~~~----g~~~l~~G~~V~F~~~~g~kG~~A~~V~~~ 66 (74)
T 2kcm_A 1 MKGKVVSYLAAKKYGFIQGDDG-ESYFLHFSELLDKK----DEGKLVKGSMVHFDPTPTPKGLAAKAISLP 66 (74)
T ss_dssp CEEEEEEEETTTTEEEEEETTS-CEECCCGGGSSCSG----GGTTCCTTSEEEEEEECTTTSCEEEEEECC
T ss_pred CCEEEEEEECCCCEEEEecCCC-ceEEEEhhhcccCC----CCCCCCCCCEEEEEEEECCCCceeEEEEEc
Confidence 4799999999999999999997 99999999999 65 789999999999999999999999999874
No 16
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=99.87 E-value=2.1e-22 Score=133.52 Aligned_cols=64 Identities=45% Similarity=0.727 Sum_probs=60.0
Q ss_pred cceEEEEeeCCCCeeEEEeCCCCccEEEEeeeheecCCCCCcccCCCCCEEEEEEEEcCCCceeeEeec
Q psy9900 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTG 77 (191)
Q Consensus 9 ~~G~vk~~~~~kGfGFI~~~~~~~dvFvh~s~l~~~~~~~g~~~l~~Gd~V~f~~~~~~~g~~A~~v~~ 77 (191)
++|+|||||..||||||.+++ ++|||||+|+|... |++.|.+|++|+|++..+++|++|.+|..
T Consensus 1 m~G~Vk~fn~~kGfGFI~~~~-g~dvFvH~s~i~~~----g~~~l~~G~~V~f~~~~~~~G~~A~~V~~ 64 (66)
T 1g6p_A 1 MRGKVKWFDSKKGYGFITKDE-GGDVFVHWSAIEME----GFKTLKEGQVVEFEIQEGKKGPQAAHVKV 64 (66)
T ss_dssp CCEEEEEEETTTTEEEEEETT-SCBCBBCSSSSCCS----SCCCCCSSSEEEEEEECSSSCCEEEEEEE
T ss_pred CcEEEEEEECCCCEEEEecCC-CceEEEEhHHcccc----CCCCCCCCCEEEEEEEECCCCCEEEEEEE
Confidence 579999999999999999997 49999999999976 78999999999999999999999999975
No 17
>2lss_A Cold shock-like protein; CSD, CSP, oligonucleotide binding F fold, RNA binding protein, DNA binding protein; NMR {Rickettsia rickettsii}
Probab=99.78 E-value=8.4e-24 Score=141.84 Aligned_cols=69 Identities=32% Similarity=0.483 Sum_probs=64.0
Q ss_pred ceeccceEEEEeeCCCCeeEEEeCCCCccEEEEeeeheecCCCCCcccCCCCCEEEEEEEEcCCCceeeEeec
Q psy9900 5 EIHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTG 77 (191)
Q Consensus 5 ~~~~~~G~vk~~~~~kGfGFI~~~~~~~dvFvh~s~l~~~~~~~g~~~l~~Gd~V~f~~~~~~~g~~A~~v~~ 77 (191)
|+.+++|+|||||..||||||.++++++|||||+|+|... |++.|.+|++|+|++..+++|++|.+|..
T Consensus 1 m~~~~~G~Vk~fn~~kGfGFI~~~~gg~dvFvH~s~i~~~----g~~~l~~G~~V~f~~~~~~~g~~A~~V~~ 69 (70)
T 2lss_A 1 MATNIVGKVKWYNSTKNFGFIEQDNGGKDVFVHKSAVDAA----GLHSLEEGQDVIFDLEEKQGKAYAVNLRI 69 (70)
Confidence 4567899999999999999999999889999999999976 68899999999999999999999999864
No 18
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=99.87 E-value=2.1e-22 Score=133.48 Aligned_cols=66 Identities=44% Similarity=0.700 Sum_probs=60.9
Q ss_pred eeeeEEEeecCCCceeEEeCCCCCcEEEeccchhccCcccccccCCCCCEEEEEEEEcCCCceeEEeecCC
Q psy9900 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPN 180 (191)
Q Consensus 110 ~~G~Vk~~~~~kgfGFI~~~d~~~dvF~h~s~~~~~~~~~~~~~l~~G~~V~f~i~~~~kg~~A~~V~~~~ 180 (191)
++|+|||||..||||||++++ ++|||||+|+|... +++.|.+|++|+|++.++++|++|++|++++
T Consensus 1 m~G~Vk~fn~~kGfGFI~~~~-g~dvFvH~s~i~~~----g~~~l~~G~~V~f~~~~~~~G~~A~~V~~~~ 66 (66)
T 1g6p_A 1 MRGKVKWFDSKKGYGFITKDE-GGDVFVHWSAIEME----GFKTLKEGQVVEFEIQEGKKGPQAAHVKVVE 66 (66)
T ss_dssp CCEEEEEEETTTTEEEEEETT-SCBCBBCSSSSCCS----SCCCCCSSSEEEEEEECSSSCCEEEEEEEEC
T ss_pred CcEEEEEEECCCCEEEEecCC-CceEEEEhHHcccc----CCCCCCCCCEEEEEEEECCCCCEEEEEEECC
Confidence 479999999999999999997 59999999999974 5889999999999999999999999999753
No 19
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=99.86 E-value=9.9e-22 Score=132.90 Aligned_cols=67 Identities=18% Similarity=0.272 Sum_probs=61.4
Q ss_pred eeeeeeEEEeecCCCceeEEeCCCCCcEEEeccchhccCcccccccCCCCCEEEEEEEEcCCCceeEEeecCCC
Q psy9900 108 HTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNG 181 (191)
Q Consensus 108 ~~~~G~Vk~~~~~kgfGFI~~~d~~~dvF~h~s~~~~~~~~~~~~~l~~G~~V~f~i~~~~kg~~A~~V~~~~~ 181 (191)
++.+|+|||||..||||||+++++++| |||+|+|... + .|.+|++|+|++.++++|++|++|+.++.
T Consensus 1 M~~~G~Vkwfn~~KGfGFI~~~dg~~d-FvH~s~i~~~----g--~l~~G~~V~F~~~~g~kG~~A~~V~~~~~ 67 (74)
T 2k5n_A 1 MAMNGTITTWFKDKGFGFIKDENGDNR-YFHVIKVANP----D--LIKKDAAVTFEPTTNNKGLSAYAVKVVPL 67 (74)
T ss_dssp CCEEEEEEEEETTTTEEEEEESSSCEE-EEEGGGBSSG----G--GCCTTCEEEEEEEECSSSEEEEEEEECCS
T ss_pred CCcceEEEEEECCCCeEEEecCCCCce-EEEHhHcccC----C--CCCCCCEEEEEEEeCCCCceeEEEEeCCC
Confidence 357899999999999999999998788 9999999974 3 89999999999999999999999998764
No 20
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=99.86 E-value=1.1e-21 Score=132.62 Aligned_cols=65 Identities=18% Similarity=0.309 Sum_probs=59.8
Q ss_pred ccceEEEEeeCCCCeeEEEeCCCCccEEEEeeeheecCCCCCcccCCCCCEEEEEEEEcCCCceeeEeecCC
Q psy9900 8 TVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPN 79 (191)
Q Consensus 8 ~~~G~vk~~~~~kGfGFI~~~~~~~dvFvh~s~l~~~~~~~g~~~l~~Gd~V~f~~~~~~~g~~A~~v~~~~ 79 (191)
|.+|+|||||..||||||.++++++| |||+|+|... + .|.+|++|+|++..+++|++|.+|..+.
T Consensus 2 ~~~G~Vkwfn~~KGfGFI~~~dg~~d-FvH~s~i~~~----g--~l~~G~~V~F~~~~g~kG~~A~~V~~~~ 66 (74)
T 2k5n_A 2 AMNGTITTWFKDKGFGFIKDENGDNR-YFHVIKVANP----D--LIKKDAAVTFEPTTNNKGLSAYAVKVVP 66 (74)
T ss_dssp CEEEEEEEEETTTTEEEEEESSSCEE-EEEGGGBSSG----G--GCCTTCEEEEEEEECSSSEEEEEEEECC
T ss_pred CcceEEEEEECCCCeEEEecCCCCce-EEEHhHcccC----C--CCCCCCEEEEEEEeCCCCceeEEEEeCC
Confidence 46899999999999999999998777 9999999975 4 8999999999999999999999998753
No 21
>2lss_A Cold shock-like protein; CSD, CSP, oligonucleotide binding F fold, RNA binding protein, DNA binding protein; NMR {Rickettsia rickettsii}
Probab=99.76 E-value=3.7e-23 Score=138.71 Aligned_cols=68 Identities=32% Similarity=0.504 Sum_probs=62.8
Q ss_pred ceeeeeeEEEeecCCCceeEEeCCCCCcEEEeccchhccCcccccccCCCCCEEEEEEEEcCCCceeEEeec
Q psy9900 107 VHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTG 178 (191)
Q Consensus 107 ~~~~~G~Vk~~~~~kgfGFI~~~d~~~dvF~h~s~~~~~~~~~~~~~l~~G~~V~f~i~~~~kg~~A~~V~~ 178 (191)
.++++|+|||||..||||||+++++++|||||+|+|... +++.|.+|+.|+|++.++++|++|++|++
T Consensus 2 ~~~~~G~Vk~fn~~kGfGFI~~~~gg~dvFvH~s~i~~~----g~~~l~~G~~V~f~~~~~~~g~~A~~V~~ 69 (70)
T 2lss_A 2 ATNIVGKVKWYNSTKNFGFIEQDNGGKDVFVHKSAVDAA----GLHSLEEGQDVIFDLEEKQGKAYAVNLRI 69 (70)
Confidence 346889999999999999999999889999999999974 57899999999999999999999999974
No 22
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=99.85 E-value=1.5e-21 Score=148.82 Aligned_cols=79 Identities=37% Similarity=0.633 Sum_probs=71.6
Q ss_pred eccceEEEEeeCCCCeeEEEeC-------CCCccEEEEeeeheecCCCCCcccCCCCCEEEEEEEEcCCCceeeEeecCC
Q psy9900 7 HTVRGIVKFYDSKRGFGFITRL-------DNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPN 79 (191)
Q Consensus 7 ~~~~G~vk~~~~~kGfGFI~~~-------~~~~dvFvh~s~l~~~~~~~g~~~l~~Gd~V~f~~~~~~~g~~A~~v~~~~ 79 (191)
.+.+|+|||||..||||||.++ ++++|||||+|+|... |++.|.+|++|+|++..+++|++|++|+.++
T Consensus 8 ~~~~G~Vkwfn~~kGfGFI~~~~~~g~p~~~g~DvFvH~s~i~~~----g~~~l~eG~~V~f~~~~g~kG~~A~~V~~pg 83 (148)
T 3ts2_A 8 LHGAGICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHME----GFRSLKEGEAVEFTFKKSAKGLESIRVTGPG 83 (148)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEEEGGGBCSS----SSCCCCTTCEEEEEEEEETTEEEEEEEESGG
T ss_pred ccceeEEEEEECCCCeeEEeeCccccccCCCCccEEEEhHHhccc----CCccCCCCCEEEEEEEEccccchhhcccccC
Confidence 5678999999999999999987 4678999999999876 7899999999999999999999999999999
Q ss_pred CCCccCCCCC
Q psy9900 80 GIPVQGAPKS 89 (191)
Q Consensus 80 ~~~~~~~~~~ 89 (191)
+.+++++.+.
T Consensus 84 g~pv~GS~rr 93 (148)
T 3ts2_A 84 GVFCIGSERR 93 (148)
T ss_dssp GCCCCCCTTS
T ss_pred Cccccccccc
Confidence 9888776643
No 23
>1wfq_A UNR protein; beta-barrel, translational regulation, RNA chaperone, RNA/DN binding, QB fold, greek-KEY topology, structur genomics; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=99.84 E-value=8.6e-21 Score=132.63 Aligned_cols=69 Identities=22% Similarity=0.393 Sum_probs=62.5
Q ss_pred cceeeeeeEEEeecCCCceeEEeCCCCCcEEEeccchhccCcccccccCCCCCEEEEEEEEcCC-C-ceeEEeecCCC
Q psy9900 106 AVHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK-D-IEAINVTGPNG 181 (191)
Q Consensus 106 ~~~~~~G~Vk~~~~~kgfGFI~~~d~~~dvF~h~s~~~~~~~~~~~~~l~~G~~V~f~i~~~~k-g-~~A~~V~~~~~ 181 (191)
++++.+|+||||| ||||||+++++++|||||+++|... ++.|.+||+|+|++.++++ | ++|++|++++.
T Consensus 15 ~~~~~~G~Vkwf~--KGfGFI~~ddgg~DVFvH~s~i~~~-----~~~L~~G~~V~F~v~~~~k~Gk~~A~~V~~~~~ 85 (89)
T 1wfq_A 15 AALRETGVIEKLL--TSYGFIQCSERQARLFFHCSQYNGN-----LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKISG 85 (89)
T ss_dssp CCCEEEEEEEEEC--SSEEEEEETTTTEEEEEETTTCSSC-----TTTCCTTCCEEEEEEECSSSCCEEEEEEEESSC
T ss_pred cccccceEEEEEe--CCeeEEecCCCCccEEEEhHHhhCc-----cCCCCCCCEEEEEEEECCCCCCcEEEEEEECCc
Confidence 3467899999996 9999999999889999999999863 5899999999999999998 7 89999998864
No 24
>1wfq_A UNR protein; beta-barrel, translational regulation, RNA chaperone, RNA/DN binding, QB fold, greek-KEY topology, structur genomics; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=99.83 E-value=7.9e-21 Score=132.83 Aligned_cols=68 Identities=19% Similarity=0.351 Sum_probs=61.4
Q ss_pred ceeccceEEEEeeCCCCeeEEEeCCCCccEEEEeeeheecCCCCCcccCCCCCEEEEEEEEcCC-C-ceeeEeecCC
Q psy9900 5 EIHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK-D-IEAINVTGPN 79 (191)
Q Consensus 5 ~~~~~~G~vk~~~~~kGfGFI~~~~~~~dvFvh~s~l~~~~~~~g~~~l~~Gd~V~f~~~~~~~-g-~~A~~v~~~~ 79 (191)
+..+.+|+||||| ||||||.++++++|||||+++|... ++.|.+||+|+|++..+++ | ++|.+|+.++
T Consensus 15 ~~~~~~G~Vkwf~--KGfGFI~~ddgg~DVFvH~s~i~~~-----~~~L~~G~~V~F~v~~~~k~Gk~~A~~V~~~~ 84 (89)
T 1wfq_A 15 AALRETGVIEKLL--TSYGFIQCSERQARLFFHCSQYNGN-----LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIS 84 (89)
T ss_dssp CCCEEEEEEEEEC--SSEEEEEETTTTEEEEEETTTCSSC-----TTTCCTTCCEEEEEEECSSSCCEEEEEEEESS
T ss_pred cccccceEEEEEe--CCeeEEecCCCCccEEEEhHHhhCc-----cCCCCCCCEEEEEEEECCCCCCcEEEEEEECC
Confidence 3467899999996 9999999999889999999999863 5899999999999999998 7 8999999864
No 25
>2yty_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=99.82 E-value=1.1e-20 Score=131.87 Aligned_cols=67 Identities=30% Similarity=0.560 Sum_probs=61.7
Q ss_pred eeeeeeEEEeecCCCceeEEeCCCCCcEEEeccchhccCcccccccCCCCCEEEEEEEEcCCC-ceeEEeecCCC
Q psy9900 108 HTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD-IEAINVTGPNG 181 (191)
Q Consensus 108 ~~~~G~Vk~~~~~kgfGFI~~~d~~~dvF~h~s~~~~~~~~~~~~~l~~G~~V~f~i~~~~kg-~~A~~V~~~~~ 181 (191)
++.+|+|+||+ ||||||+++++++|||||+++|... ++.|.+||+|+|++.++++| ++|++|+.++.
T Consensus 17 ~~~~G~Vk~f~--kGfGFI~~ddgg~DvFvH~S~i~~~-----~~~L~~G~~V~F~~~~g~~Gk~~A~~V~~~~~ 84 (88)
T 2yty_A 17 KRLLGYVATLK--DNFGFIETANHDKEIFFHYSEFSGD-----VDSLELGDMVEYSLSKGKGNKVSAEKVNKTSG 84 (88)
T ss_dssp CCEEEEEEEEC--SSEEEEECSSSSCEEEEETTTCCSC-----TTTCCTTCEEEECCCCCSCSCCBCCSCEECCC
T ss_pred CceeEEEEEEE--CCccEEecCCCCceEEEEEhhhccc-----cCcCCCCCEEEEEEEECCCCCeEeEEEEECCC
Confidence 56789999997 8999999999889999999999964 68999999999999999999 89999998864
No 26
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold shock domain, ssDNA binding, DNA B protein; 2.80A {Homo sapiens}
Probab=99.82 E-value=5.1e-20 Score=139.43 Aligned_cols=72 Identities=25% Similarity=0.371 Sum_probs=63.9
Q ss_pred ceeeeeeEEEeecCCCceeEEeCCCCCcEEEeccchhccCcccccccCCCCCEEEEEEEE---cCCCceeEEeecCCCCC
Q psy9900 107 VHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGV---GKKDIEAINVTGPNGIP 183 (191)
Q Consensus 107 ~~~~~G~Vk~~~~~kgfGFI~~~d~~~dvF~h~s~~~~~~~~~~~~~l~~G~~V~f~i~~---~~kg~~A~~V~~~~~~~ 183 (191)
.++.+|+|||||..||||||+++++++|||||+++|... ..|.+||+|+|++.. +.+|++|++|++++.++
T Consensus 60 g~m~~GtVKwFn~~KGfGFI~~ddGg~DVFVH~Sai~~~------~~L~eGq~V~Fev~~~~~~~~g~qA~nV~~~~~~p 133 (147)
T 3aqq_A 60 GPVYKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGE------YVPVEGDEVTYKMCSIPPKNEKLQAVEVVITHLAP 133 (147)
T ss_dssp SCCEEEEEEEEETTTTEEEEEESSSCSCEEEEGGGEESS------BCCCTTCEEEEEEEEC--CCSCEEEEEEEEEECCS
T ss_pred CCccceEEEEEeCCCCeEEeccCCCCccEEEEeeeecCC------CcCCCCCEEEEEEEeccCCCCCceEEEEEeCCCCC
Confidence 356899999999999999999999889999999999853 599999999999997 45679999999998766
Q ss_pred C
Q psy9900 184 V 184 (191)
Q Consensus 184 ~ 184 (191)
-
T Consensus 134 ~ 134 (147)
T 3aqq_A 134 G 134 (147)
T ss_dssp S
T ss_pred C
Confidence 3
No 27
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold shock domain, ssDNA binding, DNA B protein; 2.80A {Homo sapiens}
Probab=99.80 E-value=9.5e-20 Score=137.93 Aligned_cols=70 Identities=26% Similarity=0.397 Sum_probs=61.5
Q ss_pred eccceEEEEeeCCCCeeEEEeCCCCccEEEEeeeheecCCCCCcccCCCCCEEEEEEEEc---CCCceeeEeecCCCCC
Q psy9900 7 HTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVG---KKDIEAINVTGPNGIP 82 (191)
Q Consensus 7 ~~~~G~vk~~~~~kGfGFI~~~~~~~dvFvh~s~l~~~~~~~g~~~l~~Gd~V~f~~~~~---~~g~~A~~v~~~~~~~ 82 (191)
.+.+|+|||||..||||||.++++++|||||+++|... ..|.+||+|+|++..+ .+|++|.+|+.++..|
T Consensus 61 ~m~~GtVKwFn~~KGfGFI~~ddGg~DVFVH~Sai~~~------~~L~eGq~V~Fev~~~~~~~~g~qA~nV~~~~~~p 133 (147)
T 3aqq_A 61 PVYKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGE------YVPVEGDEVTYKMCSIPPKNEKLQAVEVVITHLAP 133 (147)
T ss_dssp CCEEEEEEEEETTTTEEEEEESSSCSCEEEEGGGEESS------BCCCTTCEEEEEEEEC--CCSCEEEEEEEEEECCS
T ss_pred CccceEEEEEeCCCCeEEeccCCCCccEEEEeeeecCC------CcCCCCCEEEEEEEeccCCCCCceEEEEEeCCCCC
Confidence 46789999999999999999999889999999999843 5999999999999874 4579999999876544
No 28
>2ytx_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=99.80 E-value=9.4e-20 Score=129.37 Aligned_cols=69 Identities=29% Similarity=0.331 Sum_probs=62.9
Q ss_pred eeeeeeEEEeecCCCceeEEeCCCCCcEEEeccchhccCcccccccCCCCCEEEEEEEEcCCCceeEEeecCCCCC
Q psy9900 108 HTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIP 183 (191)
Q Consensus 108 ~~~~G~Vk~~~~~kgfGFI~~~d~~~dvF~h~s~~~~~~~~~~~~~l~~G~~V~f~i~~~~kg~~A~~V~~~~~~~ 183 (191)
.+.+|+|||| .||||||+++++++|||||+++|... ++.|.+||+|+|++..+++|++|++|++++...
T Consensus 17 ~~~~G~Vkwf--~KGfGFI~~ddg~~DvFvH~s~i~~~-----~~~L~~G~~V~F~v~~~~~g~~A~~V~~~~~~~ 85 (97)
T 2ytx_A 17 ARCQGVVCAM--KEAFGFIERGDVVKEIFFHYSEFKGD-----LETLQPGDDVEFTIKDRNGKEVATDVRLLPQGT 85 (97)
T ss_dssp CCEEEEECCC--CSSEEEEECSSSCCCEEEETTTCCSC-----TTSCCSCCEEEEEECCCSSSCBEEEEEECCCSS
T ss_pred cceeEEEEEE--eCCceEEecCCCCceEEEEehHhccc-----cCCCCCCCEEEEEEEcCCCCcEEEEEEECCCCc
Confidence 4678999999 89999999999889999999999964 589999999999999888889999999987654
No 29
>2yty_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=99.80 E-value=4.9e-20 Score=128.60 Aligned_cols=67 Identities=28% Similarity=0.518 Sum_probs=60.9
Q ss_pred eeccceEEEEeeCCCCeeEEEeCCCCccEEEEeeeheecCCCCCcccCCCCCEEEEEEEEcCCC-ceeeEeecCC
Q psy9900 6 IHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD-IEAINVTGPN 79 (191)
Q Consensus 6 ~~~~~G~vk~~~~~kGfGFI~~~~~~~dvFvh~s~l~~~~~~~g~~~l~~Gd~V~f~~~~~~~g-~~A~~v~~~~ 79 (191)
..+.+|+||||| ||||||.++++++|||||+|+|... ++.|.+||+|+|++..+++| ++|.+|..+.
T Consensus 16 ~~~~~G~Vk~f~--kGfGFI~~ddgg~DvFvH~S~i~~~-----~~~L~~G~~V~F~~~~g~~Gk~~A~~V~~~~ 83 (88)
T 2yty_A 16 SKRLLGYVATLK--DNFGFIETANHDKEIFFHYSEFSGD-----VDSLELGDMVEYSLSKGKGNKVSAEKVNKTS 83 (88)
T ss_dssp CCCEEEEEEEEC--SSEEEEECSSSSCEEEEETTTCCSC-----TTTCCTTCEEEECCCCCSCSCCBCCSCEECC
T ss_pred CCceeEEEEEEE--CCccEEecCCCCceEEEEEhhhccc-----cCcCCCCCEEEEEEEECCCCCeEeEEEEECC
Confidence 467899999997 9999999999889999999999864 58999999999999999999 7999998753
No 30
>1x65_A UNR protein; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold, greek-KEY topology protein; NMR {Homo sapiens}
Probab=99.79 E-value=4.7e-20 Score=128.79 Aligned_cols=67 Identities=24% Similarity=0.340 Sum_probs=60.4
Q ss_pred eeeeeeEEEeecCCCceeEEeCCCCCcEEEeccchhccCcccccccCCCCCEEEEEEEEcCC---CceeEEeecCCCC
Q psy9900 108 HTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK---DIEAINVTGPNGI 182 (191)
Q Consensus 108 ~~~~G~Vk~~~~~kgfGFI~~~d~~~dvF~h~s~~~~~~~~~~~~~l~~G~~V~f~i~~~~k---g~~A~~V~~~~~~ 182 (191)
++.+|+|+||+ ||||||+++++++|||||+++|... ..|++||+|+|++.++++ +++|++|++++..
T Consensus 7 ~r~~G~Vk~f~--KGfGFI~~~~gg~DvFvH~s~i~~~------~~L~~G~~V~F~v~~g~kg~G~~~A~~V~~~~~~ 76 (89)
T 1x65_A 7 GREMGVIAAMR--DGFGFIKCVDRDVRMFFHFSEILDG------NQLHIADEVEFTVVPDMLSAQRNHAIRIKKLPKG 76 (89)
T ss_dssp CCEEEEEEECC--TTBCEEEESSSSSCCCCBTTGGGGS------CCCCTTCCEEECCBCCSSSCCCCBCCSCEECCBT
T ss_pred cceeEEEEEEe--CCcceeecCCCCccEEEEhhhccCC------CCCCCCCEEEEEEEeCCCcCCCceeeEEEECCCC
Confidence 46899999995 9999999999889999999999862 699999999999999987 3999999998753
No 31
>2ytx_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=99.77 E-value=6.3e-19 Score=125.11 Aligned_cols=68 Identities=29% Similarity=0.348 Sum_probs=61.3
Q ss_pred eeccceEEEEeeCCCCeeEEEeCCCCccEEEEeeeheecCCCCCcccCCCCCEEEEEEEEcCCCceeeEeecCCC
Q psy9900 6 IHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNG 80 (191)
Q Consensus 6 ~~~~~G~vk~~~~~kGfGFI~~~~~~~dvFvh~s~l~~~~~~~g~~~l~~Gd~V~f~~~~~~~g~~A~~v~~~~~ 80 (191)
..+.+|+|||| .||||||.++++++|||||+++|... ++.|.+||+|+|++..+++|++|.+|..++.
T Consensus 16 ~~~~~G~Vkwf--~KGfGFI~~ddg~~DvFvH~s~i~~~-----~~~L~~G~~V~F~v~~~~~g~~A~~V~~~~~ 83 (97)
T 2ytx_A 16 QARCQGVVCAM--KEAFGFIERGDVVKEIFFHYSEFKGD-----LETLQPGDDVEFTIKDRNGKEVATDVRLLPQ 83 (97)
T ss_dssp CCCEEEEECCC--CSSEEEEECSSSCCCEEEETTTCCSC-----TTSCCSCCEEEEEECCCSSSCBEEEEEECCC
T ss_pred CcceeEEEEEE--eCCceEEecCCCCceEEEEehHhccc-----cCCCCCCCEEEEEEEcCCCCcEEEEEEECCC
Confidence 46789999999 99999999999889999999999864 5899999999999988877899999998654
No 32
>1x65_A UNR protein; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold, greek-KEY topology protein; NMR {Homo sapiens}
Probab=99.75 E-value=2.4e-19 Score=125.18 Aligned_cols=66 Identities=24% Similarity=0.356 Sum_probs=58.9
Q ss_pred eeccceEEEEeeCCCCeeEEEeCCCCccEEEEeeeheecCCCCCcccCCCCCEEEEEEEEcCC---CceeeEeecCC
Q psy9900 6 IHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK---DIEAINVTGPN 79 (191)
Q Consensus 6 ~~~~~G~vk~~~~~kGfGFI~~~~~~~dvFvh~s~l~~~~~~~g~~~l~~Gd~V~f~~~~~~~---g~~A~~v~~~~ 79 (191)
..|.+|+||||+ ||||||.++++++|||||+|+|.. + ..|.+||+|+|++..+++ +++|.+|..+.
T Consensus 6 ~~r~~G~Vk~f~--KGfGFI~~~~gg~DvFvH~s~i~~-----~-~~L~~G~~V~F~v~~g~kg~G~~~A~~V~~~~ 74 (89)
T 1x65_A 6 SGREMGVIAAMR--DGFGFIKCVDRDVRMFFHFSEILD-----G-NQLHIADEVEFTVVPDMLSAQRNHAIRIKKLP 74 (89)
T ss_dssp CCCEEEEEEECC--TTBCEEEESSSSSCCCCBTTGGGG-----S-CCCCTTCCEEECCBCCSSSCCCCBCCSCEECC
T ss_pred CcceeEEEEEEe--CCcceeecCCCCccEEEEhhhccC-----C-CCCCCCCEEEEEEEeCCCcCCCceeeEEEECC
Confidence 457899999996 999999999988999999999985 3 799999999999999987 38999998754
No 33
>2ytv_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=99.73 E-value=2.4e-18 Score=117.69 Aligned_cols=65 Identities=25% Similarity=0.305 Sum_probs=59.1
Q ss_pred eeeeeeEEEeecCCCceeEEeCCC-CCcEEEeccchhccCcccccccCCCCCEEEEEEEEcCC-Cc-eeEEeecCC
Q psy9900 108 HTVRGIVKFYDSKRGFGFITRLDN-KEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK-DI-EAINVTGPN 180 (191)
Q Consensus 108 ~~~~G~Vk~~~~~kgfGFI~~~d~-~~dvF~h~s~~~~~~~~~~~~~l~~G~~V~f~i~~~~k-g~-~A~~V~~~~ 180 (191)
++.+|+|+|| .||||||+++++ ++|||||+++|. . + ..|.+||+|+|++.++++ |+ +|++|+.++
T Consensus 7 ~~~~G~V~~~--~KGfGFI~~ddg~g~DvFvH~s~i~-~----g-~~l~~G~~V~F~v~~~~k~G~~~A~~V~~~~ 74 (79)
T 2ytv_A 7 GLRRATVECV--KDQFGFINYEVGDSKKLFFHVKEVQ-D----G-IELQAGDEVEFSVILNQRTGKCSACNVWRVS 74 (79)
T ss_dssp SBCCEEEEEC--CSSEEEESCCCSSSSSEEEETTTCC-S----S-CCCCTTCEEECBCEECSSSCCEECCSCEECS
T ss_pred CcccEEEEEe--cccceeEeCCCCCCCcEEEEhHHcC-C----C-CcCCCCCEEEEEEEECCCCCCceeEEEEECC
Confidence 5678999999 699999999987 699999999999 3 3 799999999999999998 88 999999885
No 34
>2ytv_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=99.73 E-value=3.5e-18 Score=116.84 Aligned_cols=65 Identities=25% Similarity=0.305 Sum_probs=58.8
Q ss_pred eccceEEEEeeCCCCeeEEEeCCC-CccEEEEeeeheecCCCCCcccCCCCCEEEEEEEEcCC-Cc-eeeEeecCC
Q psy9900 7 HTVRGIVKFYDSKRGFGFITRLDN-KEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK-DI-EAINVTGPN 79 (191)
Q Consensus 7 ~~~~G~vk~~~~~kGfGFI~~~~~-~~dvFvh~s~l~~~~~~~g~~~l~~Gd~V~f~~~~~~~-g~-~A~~v~~~~ 79 (191)
.+.+|+|+|| .||||||.++++ ++|||||+++|. . + ..|.+||+|+|++..+++ |+ +|++|..+.
T Consensus 7 ~~~~G~V~~~--~KGfGFI~~ddg~g~DvFvH~s~i~-~----g-~~l~~G~~V~F~v~~~~k~G~~~A~~V~~~~ 74 (79)
T 2ytv_A 7 GLRRATVECV--KDQFGFINYEVGDSKKLFFHVKEVQ-D----G-IELQAGDEVEFSVILNQRTGKCSACNVWRVS 74 (79)
T ss_dssp SBCCEEEEEC--CSSEEEESCCCSSSSSEEEETTTCC-S----S-CCCCTTCEEECBCEECSSSCCEECCSCEECS
T ss_pred CcccEEEEEe--cccceeEeCCCCCCCcEEEEhHHcC-C----C-CcCCCCCEEEEEEEECCCCCCceeEEEEECC
Confidence 5689999999 699999999987 599999999999 4 6 899999999999999988 88 999998753
No 35
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=99.62 E-value=8.7e-16 Score=109.72 Aligned_cols=64 Identities=31% Similarity=0.463 Sum_probs=53.5
Q ss_pred eeceeccceEEEEeeCCCCeeEEEeCCCCccEEEEeeeheecCCCCCc--ccCCCCCEEEEEEEEcCC-Cc
Q psy9900 3 KFEIHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFF--QSLGLGEIVDFNIGVGKK-DI 70 (191)
Q Consensus 3 ~~~~~~~~G~vk~~~~~kGfGFI~~~~~~~dvFvh~s~l~~~~~~~g~--~~l~~Gd~V~f~~~~~~~-g~ 70 (191)
+.+..+.+|+|||||..||||||.++++++|+|||+|+|... ++ ..|.+|+.|+|++..... |+
T Consensus 11 ~~~~~~~~G~Vk~fn~~kGfGFI~~~~gg~dvfvH~s~l~~~----~~~~~~l~~Ge~V~g~V~~i~~fG~ 77 (101)
T 2bh8_A 11 RLQSGKMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAGSSG----AAVRGNPQQGDRVEGKIKSITDFGI 77 (101)
T ss_dssp -----CEEEEEEEEEGGGTEEEEEESSSSCEEEEECCCSCSS----SCCCCCCCTTCEEEEEEEECCSEEE
T ss_pred ccccccceeEEEEEECCCCCEEEEeCCCCcEEEEEEEEEecC----CccccCCCCCCEEEEEEEEeCCcEE
Confidence 345677899999999999999999999889999999999976 67 899999999999987654 54
No 36
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=99.52 E-value=2.7e-14 Score=101.94 Aligned_cols=60 Identities=32% Similarity=0.440 Sum_probs=52.7
Q ss_pred ceeeeeeEEEeecCCCceeEEeCCCCCcEEEeccchhccCccccc--ccCCCCCEEEEEEEEcCC-C
Q psy9900 107 VHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFF--QSLGLGEIVDFNIGVGKK-D 170 (191)
Q Consensus 107 ~~~~~G~Vk~~~~~kgfGFI~~~d~~~dvF~h~s~~~~~~~~~~~--~~l~~G~~V~f~i~~~~k-g 170 (191)
..+.+|+|||||..||||||+++++++|+|||+++|... ++ ..|.+|+.|+|.+..... |
T Consensus 14 ~~~~~G~Vk~fn~~kGfGFI~~~~gg~dvfvH~s~l~~~----~~~~~~l~~Ge~V~g~V~~i~~fG 76 (101)
T 2bh8_A 14 SGKMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAGSSG----AAVRGNPQQGDRVEGKIKSITDFG 76 (101)
T ss_dssp --CEEEEEEEEEGGGTEEEEEESSSSCEEEEECCCSCSS----SCCCCCCCTTCEEEEEEEECCSEE
T ss_pred cccceeEEEEEECCCCCEEEEeCCCCcEEEEEEEEEecC----CccccCCCCCCEEEEEEEEeCCcE
Confidence 356789999999999999999999889999999999864 46 799999999999998664 5
No 37
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=98.43 E-value=1.2e-06 Score=80.49 Aligned_cols=128 Identities=15% Similarity=0.052 Sum_probs=88.5
Q ss_pred ccceEEEEeeCCCCeeEEEeCCCCccEEEEeeeheecCCCCCcccCCCCCEEEEEEEEcCCCceeeEeecCCCCCccCCC
Q psy9900 8 TVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGAP 87 (191)
Q Consensus 8 ~~~G~vk~~~~~kGfGFI~~~~~~~dvFvh~s~l~~~~~~~g~~~l~~Gd~V~f~~~~~~~g~~A~~v~~~~~~~~~~~~ 87 (191)
...|+|+. +.|||||+.+++ ++|||++...+..++ .||+|.+.+......+++.-+.
T Consensus 21 ~~~G~~~~--~~~GfgF~~~d~-~~difi~~~~~~~a~---------~GD~V~v~i~~~~~~~eg~v~~----------- 77 (644)
T 2id0_A 21 RAEGVVKA--TEKGFGFLEVDA-QKSYFIPPPQMKKVM---------HGDRIIAVIHSEKERESAEPEE----------- 77 (644)
T ss_dssp EEEEEEEC--CSSSCEEEECSS-SCEEEECHHHHTTSC---------TTCEEEEEEECCSSSCEEEEEE-----------
T ss_pred eEEEEEEE--ecCCcEEEEECC-CCCEEECHHHHhcCC---------CCCEEEEEEecCCCCeEEEEEE-----------
Confidence 46788885 489999999986 689999999999886 9999999997642224443333
Q ss_pred CCCCccccccccCCcccccceeeeeeEEEeecCCCceeEEeCCCC-CcEEEeccchhccCcccccccCCCCCEEEEEEEE
Q psy9900 88 KSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFITRLDNK-EDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGV 166 (191)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~G~Vk~~~~~kgfGFI~~~d~~-~dvF~h~s~~~~~~~~~~~~~l~~G~~V~f~i~~ 166 (191)
++++..+-.|..|...++++|+.|+|.. .. ++...+.... ...++.|+.|..+|..
T Consensus 78 -----------------iler~~~~~vg~~~~~~~~~~v~pdd~~~~~-~i~~~~~~~~-----~~~~~~g~~v~v~i~~ 134 (644)
T 2id0_A 78 -----------------LVEPFLTRFVGKVQGKNDRLAIVPDHPLLKD-AIPCRAARGL-----NHEFKEGDWAVAEMRR 134 (644)
T ss_dssp -----------------EEECSCSEEEEEEEEETTEEEEEESSTTCCS-CEECCBCSSC-----CCCCCSSCEEEEEEEE
T ss_pred -----------------EEecCCCEEEEEEEEeCCEEEEEECCCCccc-cccccccccc-----cccCCCCCEEEEEEec
Confidence 2333344455555567889999998854 23 6655544322 1355899999999998
Q ss_pred cCC---Cc-eeEEeecCCC
Q psy9900 167 GKK---DI-EAINVTGPNG 181 (191)
Q Consensus 167 ~~k---g~-~A~~V~~~~~ 181 (191)
-+. .+ .+.-|+.++.
T Consensus 135 ~p~~~~~p~~g~i~~~LG~ 153 (644)
T 2id0_A 135 HPLKGDRSFYAELTQYITF 153 (644)
T ss_dssp CGGGTCSSCEEEEEEEEEC
T ss_pred CcCCCCCCceEEEEEEeCC
Confidence 542 25 6776666654
No 38
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=97.85 E-value=0.00084 Score=55.69 Aligned_cols=126 Identities=13% Similarity=0.054 Sum_probs=87.6
Q ss_pred CceeceeccceEEEEeeCCCCeeEEEeCCCCccEEEEeeeheecCCCCCcccCCCCCEEEEEEEEcCCC-ceeeEeecCC
Q psy9900 1 MTKFEIHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD-IEAINVTGPN 79 (191)
Q Consensus 1 ~~~~~~~~~~G~vk~~~~~kGfGFI~~~~~~~dvFvh~s~l~~~~~~~g~~~l~~Gd~V~f~~~~~~~g-~~A~~v~~~~ 79 (191)
|........+|+|+... -||+....+ +.++|+|.+.+.. ..||.|++.+-.+..+ +.|.. ..
T Consensus 2 ~~~~~G~~v~g~V~~~~---~~G~fv~~~-g~egllp~se~~~----------~vGdevev~v~~d~~~r~iat~-~~-- 64 (285)
T 3go5_A 2 MNTNLASFIVGLIIDEN---DRFYFVQKD-GQTYALAKEEGQH----------TVGDTVKGFAYTDMKQKLRLTT-LE-- 64 (285)
T ss_dssp CCTTTTEEEEEEEEEEC---SSEEEEEET-TEEEEEEGGGCCC----------CTTSEEEEEEEECTTSCEEEEC-SC--
T ss_pred ccccCCCEEEEEEEEEE---CCEEEEEcC-CeEEEEEHHHCcc----------ccCCEEEEEEEECCCCCEEEec-cc--
Confidence 45556677899999885 367666544 6899999999842 6999999998776655 33321 00
Q ss_pred CCCccCCCCCCCccccccccCCcccccceeeeeeEEEeecCCCceeEEeCCC-CCcEEEeccchhccCcccccccCCCCC
Q psy9900 80 GIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFITRLDN-KEDIFVHKSSIVKMNPKKFFQSLGLGE 158 (191)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~Vk~~~~~kgfGFI~~~d~-~~dvF~h~s~~~~~~~~~~~~~l~~G~ 158 (191)
| .........|+|+.. .+.||....-.. +.|.|+|+|++... ....++.||
T Consensus 65 --p--------------------~~~~G~~~~g~V~~v--~~~~GaFVdiG~~~~d~lvp~sel~~~----~~~~~~~Gd 116 (285)
T 3go5_A 65 --V--------------------TATQDQFGWGRVTEV--RKDLGVFVDTGLPDKEIVVSLDILPEL----KELWPKKGD 116 (285)
T ss_dssp --C--------------------CSCSSSCEEEEEEEE--ETTTEEEEECSCTTCCEEEEGGGSCSS----GGGSCCTTC
T ss_pred --c--------------------cccCCCEEEEEEEEE--ccCceEEEEECCCCcEEEEEHHHCCcc----cccccCCCC
Confidence 0 022345678999887 345786655554 58999999998542 124679999
Q ss_pred EEEEEEEEcCCCc
Q psy9900 159 IVDFNIGVGKKDI 171 (191)
Q Consensus 159 ~V~f~i~~~~kg~ 171 (191)
.|.+.+..++++.
T Consensus 117 ~v~v~l~iD~~~R 129 (285)
T 3go5_A 117 QLYIRLEVDKKDR 129 (285)
T ss_dssp EEEEEEEECTTSC
T ss_pred EEEEEEEECCCCc
Confidence 9998888777663
No 39
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=97.63 E-value=0.0012 Score=54.70 Aligned_cols=143 Identities=14% Similarity=0.022 Sum_probs=91.6
Q ss_pred eccceEEEEeeCCCCeeEEEeCCC-CccEEEEeeeheecCCCCCcccCCCCCEEEEEEEEcCCCceeeEeecC-CCCCcc
Q psy9900 7 HTVRGIVKFYDSKRGFGFITRLDN-KEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGP-NGIPVQ 84 (191)
Q Consensus 7 ~~~~G~vk~~~~~kGfGFI~~~~~-~~dvFvh~s~l~~~~~~~g~~~l~~Gd~V~f~~~~~~~g~~A~~v~~~-~~~~~~ 84 (191)
....|+|++-+ +.||....-+. +.|.|+|+|++.... ...+..||.|.+.+..++++.-+...... ...|..
T Consensus 71 ~~~~g~V~~v~--~~~GaFVdiG~~~~d~lvp~sel~~~~----~~~~~~Gd~v~v~l~iD~~~Ri~ls~k~~~~~~~~~ 144 (285)
T 3go5_A 71 QFGWGRVTEVR--KDLGVFVDTGLPDKEIVVSLDILPELK----ELWPKKGDQLYIRLEVDKKDRIWGLLAYQEDFQRLA 144 (285)
T ss_dssp SCEEEEEEEEE--TTTEEEEECSCTTCCEEEEGGGSCSSG----GGSCCTTCEEEEEEEECTTSCEEEEECCHHHHHHHC
T ss_pred CEEEEEEEEEc--cCceEEEEECCCCcEEEEEHHHCCccc----ccccCCCCEEEEEEEECCCCcEEEEehhhhhcchhh
Confidence 44678898874 45776555554 579999999986431 24679999999888777655323222100 000000
Q ss_pred CCCCCCCccccccccCCcccccceeeeeeEEEeecCCCceeEE-eCCCCCcEEEeccchhccCcccccccCCCCCEEEEE
Q psy9900 85 GAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFIT-RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFN 163 (191)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~Vk~~~~~kgfGFI~-~~d~~~dvF~h~s~~~~~~~~~~~~~l~~G~~V~f~ 163 (191)
. ............|+|....+ ||+.. ..+.+-+-|+|.|++. ..|+.||.|+..
T Consensus 145 --~------------~~~~~~~G~~V~g~V~~i~~---~G~fV~~i~~g~~Glih~SEl~--------~~l~~Gd~v~~~ 199 (285)
T 3go5_A 145 --R------------PAYNNMQNQNWPAIVYRLKL---SGTFVYLPENNMLGFIHPSERY--------AEPRLGQVLDAR 199 (285)
T ss_dssp --C------------CCCSCCTTCEEEEEEEEEET---TEEEEEETTTTEEEEECGGGCS--------SCCCTTCEEEEE
T ss_pred --h------------hhhhCCCCCEEEEEEEEEeC---CcEEEEEeCCCeEEEEEHHHcc--------ccCCCCCEEEEE
Confidence 0 00112334578999988743 67655 6666889999999997 478999999999
Q ss_pred EEEc-C-CCceeEEeecCC
Q psy9900 164 IGVG-K-KDIEAINVTGPN 180 (191)
Q Consensus 164 i~~~-~-kg~~A~~V~~~~ 180 (191)
|..- + +|.-...++.+.
T Consensus 200 V~~id~~d~kI~LSlk~~~ 218 (285)
T 3go5_A 200 VIGFREVDRTLNLSLKPRS 218 (285)
T ss_dssp EEEEETTTTEEEEECSCCC
T ss_pred EEEEECCCCeEEEEeChhh
Confidence 8873 3 454445554443
No 40
>1a62_A RHO; transcription termination, termination, RNA binding domain, transcription regulation, OB fold, F1-ATPase; 1.55A {Escherichia coli BL21} SCOP: a.140.3.1 b.40.4.5 PDB: 1a63_A 2a8v_A 1a8v_A
Probab=97.45 E-value=0.00036 Score=51.39 Aligned_cols=69 Identities=26% Similarity=0.407 Sum_probs=52.3
Q ss_pred eeeeEEEeecCCCceeEEeCC-----CCCcEEEeccchhccCcccccccCCCCCEEEEEEEEcCCC---ceeEEeecCCC
Q psy9900 110 VRGIVKFYDSKRGFGFITRLD-----NKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD---IEAINVTGPNG 181 (191)
Q Consensus 110 ~~G~Vk~~~~~kgfGFI~~~d-----~~~dvF~h~s~~~~~~~~~~~~~l~~G~~V~f~i~~~~kg---~~A~~V~~~~~ 181 (191)
..|++..- .+||||+.+++ +..||||+.+.+.. -.|..||.|+-.+...+.| ..-+.|.-++|
T Consensus 51 ~~Gvlei~--~dG~GFlr~~~~~y~~~~~DiyVs~~~irr-------f~lr~GD~V~g~vr~~~~~ek~~~l~~v~~vng 121 (130)
T 1a62_A 51 GDGVLEIL--QDGFGFLRSADSSYLAGPDDIYVSPSQIRR-------FNLRTGDTISGKIRPPKEGERYFALLKVNEVNF 121 (130)
T ss_dssp EEEEEEEC--TTSCEEEECGGGTTCCCTTCEEECHHHHHH-------TTCCTTCEEEEEEECCCTTCCSEEEEEEEEETT
T ss_pred EEEEEEEc--CCCeEEEecCCcCCCCCCCCEEECHHHHhH-------hCCCCCCEEEEEEeCCCCCCcccceeEEEeECC
Confidence 56777654 57999999984 56899999999985 4789999999999876665 34457777777
Q ss_pred CCCCCC
Q psy9900 182 IPVQGA 187 (191)
Q Consensus 182 ~~~~~~ 187 (191)
.+...+
T Consensus 122 ~~pe~~ 127 (130)
T 1a62_A 122 DKPENA 127 (130)
T ss_dssp BCCC--
T ss_pred CCHHHh
Confidence 665443
No 41
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16
Probab=97.38 E-value=0.0011 Score=61.79 Aligned_cols=152 Identities=11% Similarity=0.039 Sum_probs=87.7
Q ss_pred ccceEEEEeeCCCCe--eEEEeCCCCccEEEEe-eeheecCCCCCcccCCCCCEEEEEEEEcCCCce-eeEeec------
Q psy9900 8 TVRGIVKFYDSKRGF--GFITRLDNKEDIFVHK-SSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIE-AINVTG------ 77 (191)
Q Consensus 8 ~~~G~vk~~~~~kGf--GFI~~~~~~~dvFvh~-s~l~~~~~~~g~~~l~~Gd~V~f~~~~~~~g~~-A~~v~~------ 77 (191)
..+|++.- +.+|| ||+..++.++|||+.. .++..++ +||.|.+++........ ...+..
T Consensus 32 l~~G~l~~--~~~~~~~gfv~~~~~~~di~I~~~~~~n~A~---------~GD~V~V~i~~~~~~~~~~~~~~~~~~~~~ 100 (760)
T 2vnu_D 32 LYQGNIQI--SEYNFLEGSVSLPRFSKPVLIVGQKNLNRAF---------NGDQVIVELLPQSEWKAPSSIVLDSEHFDV 100 (760)
T ss_dssp EEEEEEEE--CSSBTTEEEECCSSSSSCEEEESHHHHTTCC---------TTCEEEEEECCGGGCBCCCSSCBCTTTCC-
T ss_pred EEEEEEEE--ecCCCccEEEEcCCCCCCEEEcChhhhcccc---------CCCEEEEEEecccccccccccccccccccc
Confidence 35787775 47899 9999998789999998 8898886 99999999964321000 000000
Q ss_pred ---CCC-----------------CCccCCCCCCCc------cccccccCCcccccceeeeeeEEEeecCC--------Cc
Q psy9900 78 ---PNG-----------------IPVQGAPKSSSE------TVSGTYRNDSFFPAVHTVRGIVKFYDSKR--------GF 123 (191)
Q Consensus 78 ---~~~-----------------~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~G~Vk~~~~~k--------gf 123 (191)
..+ .+.........+ .....+......++++..+-.|..+.... .+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eG~Vv~IleR~~~~~vG~l~~~~~~~~~~~~~~ 180 (760)
T 2vnu_D 101 NDNPDIEAGDDDDNNESSSNTTVISDKQRRLLAKDAMIAQRSKKIQPTAKVVYIQRRSWRQYVGQLAPSSVDPQSSSTQN 180 (760)
T ss_dssp --------------------------------------------CBCBEEEEEEEECCCCEEEEEECGGGCCTTCCSCEE
T ss_pred cccccccccccccccccccccccccchhhhhhhhhhhhccccCCCCceEEEEEEEEECCceEEEEEEEccCccccCccce
Confidence 000 000000000000 00011223334455555555677775443 26
Q ss_pred eeEEeCCCC-CcEEEeccchhccCcccccccCCCCCEEEEEEEEcCCC---ceeEEeecCC
Q psy9900 124 GFITRLDNK-EDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD---IEAINVTGPN 180 (191)
Q Consensus 124 GFI~~~d~~-~dvF~h~s~~~~~~~~~~~~~l~~G~~V~f~i~~~~kg---~~A~~V~~~~ 180 (191)
+|+.|+|.. ..|++....... ..|+.|.++|..=+.+ +.+.-|+.++
T Consensus 181 ~~~~P~d~ri~~i~i~~~~~~~----------~~g~~vvv~i~~~p~~~~~p~G~i~~~LG 231 (760)
T 2vnu_D 181 VFVILMDKCLPKVRIRTRRAAE----------LLDKRIVISIDSWPTTHKYPLGHFVRDLG 231 (760)
T ss_dssp EEEEESSTTSCCEEEEETTGGG----------GTTEEEEEEEEECCTTCSSCEEEEEEEEE
T ss_pred EEEEECCCCCccEEEecccccc----------cCCCEEEEEEeeccCCCCCCcEEEEEEeC
Confidence 899999865 578887665432 3599999999885533 6666666654
No 42
>1a62_A RHO; transcription termination, termination, RNA binding domain, transcription regulation, OB fold, F1-ATPase; 1.55A {Escherichia coli BL21} SCOP: a.140.3.1 b.40.4.5 PDB: 1a63_A 2a8v_A 1a8v_A
Probab=97.05 E-value=0.00079 Score=49.53 Aligned_cols=64 Identities=27% Similarity=0.419 Sum_probs=46.4
Q ss_pred cceEEEEeeCCCCeeEEEeCC-----CCccEEEEeeeheecCCCCCcccCCCCCEEEEEEEEcCCC--c-eeeEeecCCC
Q psy9900 9 VRGIVKFYDSKRGFGFITRLD-----NKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD--I-EAINVTGPNG 80 (191)
Q Consensus 9 ~~G~vk~~~~~kGfGFI~~~~-----~~~dvFvh~s~l~~~~~~~g~~~l~~Gd~V~f~~~~~~~g--~-~A~~v~~~~~ 80 (191)
..|++.-- .+||||+.+++ +..||||+.+.+.. -.|..||.|...+.....+ . .-..|..+++
T Consensus 51 ~~Gvlei~--~dG~GFlr~~~~~y~~~~~DiyVs~~~irr-------f~lr~GD~V~g~vr~~~~~ek~~~l~~v~~vng 121 (130)
T 1a62_A 51 GDGVLEIL--QDGFGFLRSADSSYLAGPDDIYVSPSQIRR-------FNLRTGDTISGKIRPPKEGERYFALLKVNEVNF 121 (130)
T ss_dssp EEEEEEEC--TTSCEEEECGGGTTCCCTTCEEECHHHHHH-------TTCCTTCEEEEEEECCCTTCCSEEEEEEEEETT
T ss_pred EEEEEEEc--CCCeEEEecCCcCCCCCCCCEEECHHHHhH-------hCCCCCCEEEEEEeCCCCCCcccceeEEEeECC
Confidence 46666643 67999999883 57899999999985 3678999999999765544 2 2345555544
Q ss_pred C
Q psy9900 81 I 81 (191)
Q Consensus 81 ~ 81 (191)
.
T Consensus 122 ~ 122 (130)
T 1a62_A 122 D 122 (130)
T ss_dssp B
T ss_pred C
Confidence 4
No 43
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=96.76 E-value=0.0082 Score=57.50 Aligned_cols=152 Identities=11% Similarity=0.032 Sum_probs=86.6
Q ss_pred ccceEEEEeeCCCCe--eEEEeCCCCccEEEEe-eeheecCCCCCcccCCCCCEEEEEEEEcCCCceeeEeecC------
Q psy9900 8 TVRGIVKFYDSKRGF--GFITRLDNKEDIFVHK-SSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGP------ 78 (191)
Q Consensus 8 ~~~G~vk~~~~~kGf--GFI~~~~~~~dvFvh~-s~l~~~~~~~g~~~l~~Gd~V~f~~~~~~~g~~A~~v~~~------ 78 (191)
-.+|++.- +.+|| ||+.+++.++|||+.. .++..++ +||.|.+++...............
T Consensus 249 l~~G~l~v--~~~~~~egfV~~~~~~~DI~I~~~~~~n~A~---------~GD~V~V~i~~~~~~~~~~~~~~~~~~~~~ 317 (977)
T 2wp8_J 249 LYQGNIQI--SEYNFLEGSVSLPRFSKPVLIVGQKNLNRAF---------NGDQVIVELLPQSEWKAPSSIVLDSEHFDV 317 (977)
T ss_dssp SEEEEEEE--CSSBTTEEEECCTTCSSCEEEESHHHHTTCC---------TTCEEEEEECCGGGCBCCCSCCBCGGGSST
T ss_pred EEEEEEEE--ccCCCccEEEEcCCCCCCEEEcChHHhhhCc---------CCCEEEEEEecccccccccccccccccccc
Confidence 35677765 58999 9999998789999998 8888886 999999999643221000000000
Q ss_pred CCCCccCC---------C---CCCCcc---------------ccccccCCcccccceeeeeeEEEeecCC--------Cc
Q psy9900 79 NGIPVQGA---------P---KSSSET---------------VSGTYRNDSFFPAVHTVRGIVKFYDSKR--------GF 123 (191)
Q Consensus 79 ~~~~~~~~---------~---~~~~~~---------------~~~~~~~~~~~~~~~~~~G~Vk~~~~~k--------gf 123 (191)
...+.... . ...+.. ....+......++++..+-.|..+.... .+
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eG~Vv~IleR~~~~~vG~l~~~~~~~~g~~~~~ 397 (977)
T 2wp8_J 318 NDNPDIEAGDDDDNNESSSNTTVISDKQRRLLAKDAMIAQRSKKIQPTAKVVYIQRRSWRQYVGQLAPSSVDPQSSSTQN 397 (977)
T ss_dssp TCCCCCC------------CCCCCCHHHHHHHHHHHHHHHHCSCCBCBEEEEEEEECCCCEEEEEECGGGCCTTCCSCEE
T ss_pred ccccccccccccccccccccccccchhhhhhhhhhhhhccccCCCCceEEEEEEEEECCCeEEEEEEEecCcccCCccce
Confidence 00000000 0 000000 0001222333445555455667775443 23
Q ss_pred eeEEeCCCC-CcEEEeccchhccCcccccccCCCCCEEEEEEEEcCC---CceeEEeecCC
Q psy9900 124 GFITRLDNK-EDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK---DIEAINVTGPN 180 (191)
Q Consensus 124 GFI~~~d~~-~dvF~h~s~~~~~~~~~~~~~l~~G~~V~f~i~~~~k---g~~A~~V~~~~ 180 (191)
.|+.|+|.. ..|++....... ..|+.|.++|..=+. -+.+.-|+.++
T Consensus 398 ~~~~P~D~ri~~i~I~~~~~~~----------~~g~~vvv~I~~wp~~~~~p~G~iv~~LG 448 (977)
T 2wp8_J 398 VFVILMDKCLPKVRIRTRRAAE----------LLDKRIVISIDSWPTTHKYPLGHFVRDLG 448 (977)
T ss_dssp EEEEESSTTSCCEEEEETTTTG----------GGGEEEEEEEEECCTTCSSCEEEEEEEEE
T ss_pred EEEEECCCCCccEEeccccccc----------cCCCEEEEEEeeccCCCCCccEEEEEEeC
Confidence 589998865 578887654321 358999999988543 26666666654
No 44
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=95.79 E-value=0.013 Score=53.68 Aligned_cols=62 Identities=21% Similarity=0.252 Sum_probs=49.2
Q ss_pred eeeeeEEEeecCCCceeEEeCCCCCcEEEeccchhccCcccccccCCCCCEEEEEEEEcCCCceeEEeecCCCC
Q psy9900 109 TVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGI 182 (191)
Q Consensus 109 ~~~G~Vk~~~~~kgfGFI~~~d~~~dvF~h~s~~~~~~~~~~~~~l~~G~~V~f~i~~~~kg~~A~~V~~~~~~ 182 (191)
...|+|..- .+||||+.+++ ++|||++-.++..+ -.||+|.+.+......++|.-++++..+
T Consensus 21 ~~~G~~~~~--~~GfgF~~~d~-~~difi~~~~~~~a---------~~GD~V~v~i~~~~~~~eg~v~~iler~ 82 (644)
T 2id0_A 21 RAEGVVKAT--EKGFGFLEVDA-QKSYFIPPPQMKKV---------MHGDRIIAVIHSEKERESAEPEELVEPF 82 (644)
T ss_dssp EEEEEEECC--SSSCEEEECSS-SCEEEECHHHHTTS---------CTTCEEEEEEECCSSSCEEEEEEEEECS
T ss_pred eEEEEEEEe--cCCcEEEEECC-CCCEEECHHHHhcC---------CCCCEEEEEEecCCCCeEEEEEEEEecC
Confidence 578888764 78999999986 68999999888754 5899999999875333788777776653
No 45
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=93.52 E-value=0.19 Score=43.64 Aligned_cols=69 Identities=29% Similarity=0.524 Sum_probs=50.7
Q ss_pred eeeeEEEeecCCCceeEEeCC-----CCCcEEEeccchhccCcccccccCCCCCEEEEEEEEcCCC---ceeEEeecCCC
Q psy9900 110 VRGIVKFYDSKRGFGFITRLD-----NKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD---IEAINVTGPNG 181 (191)
Q Consensus 110 ~~G~Vk~~~~~kgfGFI~~~d-----~~~dvF~h~s~~~~~~~~~~~~~l~~G~~V~f~i~~~~kg---~~A~~V~~~~~ 181 (191)
..|+.... ..||||+.+.+ +..||||..+.+.. -.|+.||.|+=.+..-+.| ..-..|.-++|
T Consensus 58 ~~g~le~~--~~g~gflr~~~~~y~~~~~d~yvs~~~ir~-------~~lr~gd~v~g~~r~~~~~e~~~~l~~v~~vng 128 (427)
T 3l0o_A 58 GEGVLEIH--PEGFGFLRRIEDNLLPSNDDIYISPSQIRK-------FNLNTGDIISGVIRKPKEGEKYFAMIKIEAINY 128 (427)
T ss_dssp EEEEEEEC--TTSCEEEECGGGTTCCCSSCEEECHHHHHH-------TTCCTTCEEEEEEECCCSSSCSEEEEEEEEETT
T ss_pred EEEEEEEc--CCCceEeeCCccCCCCCCCCeeeCHHHHHh-------cCCCCCCEEEEEEeCCCCCcccccceEEEecCC
Confidence 56777665 57999999873 45899999999997 5899999999998875554 34456777777
Q ss_pred CCCCCC
Q psy9900 182 IPVQGA 187 (191)
Q Consensus 182 ~~~~~~ 187 (191)
.+....
T Consensus 129 ~~p~~~ 134 (427)
T 3l0o_A 129 RPVEAV 134 (427)
T ss_dssp EEC---
T ss_pred CChHHh
Confidence 554433
No 46
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=92.11 E-value=0.29 Score=32.12 Aligned_cols=56 Identities=11% Similarity=0.160 Sum_probs=40.6
Q ss_pred eeceeccceEEEEeeCCCCeeE-EEeCCCCccEEEEeeeheecCCCCCcccCCCCCEEEEEEEEc
Q psy9900 3 KFEIHTVRGIVKFYDSKRGFGF-ITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVG 66 (191)
Q Consensus 3 ~~~~~~~~G~vk~~~~~kGfGF-I~~~~~~~dvFvh~s~l~~~~~~~g~~~l~~Gd~V~f~~~~~ 66 (191)
-..-....|+|+.-.. ||+ +..++ +-+-|+|.|++.... ...++.||.|.+.+..-
T Consensus 3 ~~~G~iv~G~V~~v~~---~G~fV~l~~-~~~Gllh~sel~~~~----~~~~~~Gd~V~v~V~~v 59 (80)
T 2k52_A 3 VEPGKFYKGVVTRIEK---YGAFINLNE-QVRGLLRPRDMISLR----LENLNVGDEIIVQAIDV 59 (80)
T ss_dssp CCTTCEEEEEEEEEET---TEEEEEEET-TEEEEECGGGCSSCC----GGGCCTTCEEEEEEEEE
T ss_pred CCCCCEEEEEEEEEeC---CEEEEEECC-CCEEEEEHHHCCccc----ceeeCCCCEEEEEEEEE
Confidence 3344567899998753 674 44444 688999999997531 24789999999998753
No 47
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.70 E-value=0.31 Score=34.75 Aligned_cols=57 Identities=18% Similarity=0.241 Sum_probs=38.7
Q ss_pred eccceEEEEeeCCCCee-EEEeCCCCccEEEEeeeheecCCCCCcccCCCCCEEEEEEEEc
Q psy9900 7 HTVRGIVKFYDSKRGFG-FITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVG 66 (191)
Q Consensus 7 ~~~~G~vk~~~~~kGfG-FI~~~~~~~dvFvh~s~l~~~~~~~g~~~l~~Gd~V~f~~~~~ 66 (191)
....|+|+.... || ||..++.+.+-|+|.+++......+-...++.||.|.+.+..-
T Consensus 24 ~iv~G~V~~I~~---fGaFV~l~g~~~~Glvhisel~~~~~~~~~~~~~~Gd~V~VkV~~v 81 (119)
T 2cqo_A 24 TIFQGEVAMVTD---YGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGR 81 (119)
T ss_dssp CEEEEEEEEEET---TEEEEECTTCSSCEEEEHHHHCSSCCSCHHHHCCTTCEEEEEEEEE
T ss_pred CEEEEEEEEEeC---ceEEEEECCCcEEEEEEHHHCCcccccChhhcCCCCCEEEEEEEEE
Confidence 457899998853 67 5555343469999999996531000113588999999998753
No 48
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=91.50 E-value=1.4 Score=28.67 Aligned_cols=54 Identities=11% Similarity=0.262 Sum_probs=39.7
Q ss_pred eeeeeeEEEeecCCCceeEEeCCCCCcEEEeccchhccCcccccccCCCCCEEEEEEEEcC
Q psy9900 108 HTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGK 168 (191)
Q Consensus 108 ~~~~G~Vk~~~~~kgfGFI~~~d~~~dvF~h~s~~~~~~~~~~~~~l~~G~~V~f~i~~~~ 168 (191)
..+.|+|....+ ||+...-+.+.+-++|.|++... ....++.||.|.+.+..-+
T Consensus 7 ~iv~G~V~~v~~---~G~fV~l~~~~~Gllh~sel~~~----~~~~~~~Gd~V~v~V~~vd 60 (80)
T 2k52_A 7 KFYKGVVTRIEK---YGAFINLNEQVRGLLRPRDMISL----RLENLNVGDEIIVQAIDVR 60 (80)
T ss_dssp CEEEEEEEEEET---TEEEEEEETTEEEEECGGGCSSC----CGGGCCTTCEEEEEEEEEE
T ss_pred CEEEEEEEEEeC---CEEEEEECCCCEEEEEHHHCCcc----cceeeCCCCEEEEEEEEEE
Confidence 458899988743 77544433378999999998743 1247999999999998744
No 49
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.27 E-value=3.2 Score=28.42 Aligned_cols=63 Identities=16% Similarity=0.129 Sum_probs=42.8
Q ss_pred ccceeeeeeEEEeecCCCce-eEEeCC--CCCcEEEeccchhccC-cccccccCCCCCEEEEEEEEcCCC
Q psy9900 105 PAVHTVRGIVKFYDSKRGFG-FITRLD--NKEDIFVHKSSIVKMN-PKKFFQSLGLGEIVDFNIGVGKKD 170 (191)
Q Consensus 105 ~~~~~~~G~Vk~~~~~kgfG-FI~~~d--~~~dvF~h~s~~~~~~-~~~~~~~l~~G~~V~f~i~~~~kg 170 (191)
.....+.|+|+... .|| ||.-.+ .+.+-|+|++++.... ...--..++.||.|.+.+..-+.+
T Consensus 11 ~vG~i~~G~V~~v~---~fG~FV~l~~~~~~~~Glvhisel~~~~~~~~~~~~~~~Gd~V~VkV~~vd~~ 77 (103)
T 2eqs_A 11 TIGDIYNGKVTSIM---QFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVKVKVLSFTGT 77 (103)
T ss_dssp CTTCEEEEEEEEEC---SSCEEEEECSSSSCCEEEECGGGTSSSSCCCCHHHHCCTTCEEEEEEEEEETT
T ss_pred CCCCEEEEEEEEEe---ccEEEEEEcCCCCCeEEEEEHHHCCCCcccCCcccEeCCCCEEEEEEEEEECC
Confidence 34467899998873 377 555554 2789999999994210 000114589999999999886655
No 50
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=89.61 E-value=3.9 Score=28.51 Aligned_cols=75 Identities=12% Similarity=0.156 Sum_probs=48.0
Q ss_pred cceeeeeeEEEeecCCCceeEEeCCCCCcEEEeccchhcc-CcccccccCCCCCEEEEEEEEcC--CCceeEEeecCCCC
Q psy9900 106 AVHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKM-NPKKFFQSLGLGEIVDFNIGVGK--KDIEAINVTGPNGI 182 (191)
Q Consensus 106 ~~~~~~G~Vk~~~~~kgfGFI~~~d~~~dvF~h~s~~~~~-~~~~~~~~l~~G~~V~f~i~~~~--kg~~A~~V~~~~~~ 182 (191)
....+.|+|....+ ||+...-+.+.+-|+|++++... ..+.--..++.||.|.+.|..-+ +|.-...++.+...
T Consensus 30 ~G~~~~G~V~~v~~---~G~FV~l~~~~~Glvhisel~~~~~~~~~~~~~~vGd~V~vkV~~vd~~~~rI~lslk~~~~~ 106 (115)
T 2khi_A 30 EGTKLTGRVTNLTD---YGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKAN 106 (115)
T ss_dssp SSCEEEEEEEEEET---TEEEEECSTTCEEEEETTSSSCSSTTCSSTTTCCTTCEEEEEEEEEETTTTEEEECCCCCCSS
T ss_pred CCCEEEEEEEEEEC---CEEEEEECCCCEEEEEHHHCCccccccCcccEECCCCEEEEEEEEEECCCCEEEEEEEecCcC
Confidence 34568999988743 78665555578999999998541 00011246899999999998754 34333334433333
Q ss_pred C
Q psy9900 183 P 183 (191)
Q Consensus 183 ~ 183 (191)
|
T Consensus 107 p 107 (115)
T 2khi_A 107 P 107 (115)
T ss_dssp C
T ss_pred H
Confidence 3
No 51
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=89.31 E-value=1.4 Score=31.61 Aligned_cols=59 Identities=20% Similarity=0.230 Sum_probs=41.3
Q ss_pred ceeeeeeEEEeecCCCceeEEeCCCCCcEEEeccchhccCcccccccCCCCCEEEEEEEEcC
Q psy9900 107 VHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGK 168 (191)
Q Consensus 107 ~~~~~G~Vk~~~~~kgfGFI~~~d~~~dvF~h~s~~~~~~~~~~~~~l~~G~~V~f~i~~~~ 168 (191)
...+.|+|.... .||+...-+.+.+-++|++++.......--..++.||.|.+.|..-+
T Consensus 8 G~iv~G~V~~i~---~~G~FV~l~~~~~Glihisel~~~~~~~~~~~~~vGd~V~vkV~~vd 66 (130)
T 2k4k_A 8 GSVYTGKVTGLQ---AYGAFVALDEETQGLVHISEVTHGFVKDINEHLSVGDEVQVKVLAVD 66 (130)
T ss_dssp TCEEEEEEEEEE---TTEEEEEEETTEEEEEEGGGTSSSCCSCGGGTCCTTCEEEEEEEEEE
T ss_pred CCEEEEEEEEEe---CCeEEEEECCCcEEEEEHHHCCcccccCccccCCCCCEEEEEEEEEe
Confidence 346789998873 36765555457899999999964310011256899999999988743
No 52
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=89.06 E-value=0.73 Score=39.97 Aligned_cols=64 Identities=28% Similarity=0.500 Sum_probs=45.5
Q ss_pred cceEEEEeeCCCCeeEEEeC-----CCCccEEEEeeeheecCCCCCcccCCCCCEEEEEEEEcCCC---ceeeEeecCCC
Q psy9900 9 VRGIVKFYDSKRGFGFITRL-----DNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD---IEAINVTGPNG 80 (191)
Q Consensus 9 ~~G~vk~~~~~kGfGFI~~~-----~~~~dvFvh~s~l~~~~~~~g~~~l~~Gd~V~f~~~~~~~g---~~A~~v~~~~~ 80 (191)
..|++.-- ..||||+.+. .+..||||..+.++.. .|+.||.|.-.+.....+ ..-..|..+++
T Consensus 58 ~~g~le~~--~~g~gflr~~~~~y~~~~~d~yvs~~~ir~~-------~lr~gd~v~g~~r~~~~~e~~~~l~~v~~vng 128 (427)
T 3l0o_A 58 GEGVLEIH--PEGFGFLRRIEDNLLPSNDDIYISPSQIRKF-------NLNTGDIISGVIRKPKEGEKYFAMIKIEAINY 128 (427)
T ss_dssp EEEEEEEC--TTSCEEEECGGGTTCCCSSCEEECHHHHHHT-------TCCTTCEEEEEEECCCSSSCSEEEEEEEEETT
T ss_pred EEEEEEEc--CCCceEeeCCccCCCCCCCCeeeCHHHHHhc-------CCCCCCEEEEEEeCCCCCcccccceEEEecCC
Confidence 34655544 5799999976 3468999999999974 789999999998765444 22344555554
Q ss_pred C
Q psy9900 81 I 81 (191)
Q Consensus 81 ~ 81 (191)
.
T Consensus 129 ~ 129 (427)
T 3l0o_A 129 R 129 (427)
T ss_dssp E
T ss_pred C
Confidence 3
No 53
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=87.94 E-value=4.5 Score=28.19 Aligned_cols=58 Identities=14% Similarity=0.189 Sum_probs=40.1
Q ss_pred eccceEEEEeeCCCCeeEEEeCCCCccEEEEeeeheec-CCCCCcccCCCCCEEEEEEEEcC
Q psy9900 7 HTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKM-NPKKFFQSLGLGEIVDFNIGVGK 67 (191)
Q Consensus 7 ~~~~G~vk~~~~~kGfGFI~~~~~~~dvFvh~s~l~~~-~~~~g~~~l~~Gd~V~f~~~~~~ 67 (191)
....|+|+.-.. ||+...-+.+-+-|+|.|++... ........++.||.|.+.+..-.
T Consensus 32 ~~~~G~V~~v~~---~G~FV~l~~~~~Glvhisel~~~~~~~~~~~~~~vGd~V~vkV~~vd 90 (115)
T 2khi_A 32 TKLTGRVTNLTD---YGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDID 90 (115)
T ss_dssp CEEEEEEEEEET---TEEEEECSTTCEEEEETTSSSCSSTTCSSTTTCCTTCEEEEEEEEEE
T ss_pred CEEEEEEEEEEC---CEEEEEECCCCEEEEEHHHCCccccccCcccEECCCCEEEEEEEEEE
Confidence 456788888753 77655555568999999998541 11112346899999999997643
No 54
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=87.49 E-value=3.4 Score=36.75 Aligned_cols=63 Identities=13% Similarity=0.123 Sum_probs=46.4
Q ss_pred ceeeeeeEEEeecCCCceeEEeCCCCCcEEEeccchhccCc--------cccc-ccCCCCCEEEEEEEEcCCC
Q psy9900 107 VHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNP--------KKFF-QSLGLGEIVDFNIGVGKKD 170 (191)
Q Consensus 107 ~~~~~G~Vk~~~~~kgfGFI~~~d~~~dvF~h~s~~~~~~~--------~~~~-~~l~~G~~V~f~i~~~~kg 170 (191)
...+.|+|+...+.-+--||.-.. +++-|+|++++..... .... .-|++||.|.+.|...+.|
T Consensus 46 GnIY~GkV~rv~p~~~aAFVdiG~-gk~gfLhisei~~~~~~~~~~~~~~~~i~d~lk~Gq~VlVQV~Ke~~g 117 (517)
T 2bx2_L 46 ANIYKGKITRIEPSLEAAFVDYGA-ERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERG 117 (517)
T ss_dssp TCEEEEEEEEEETTTTEEEEESSS-SSCEEEEGGGSCGGGCC-------CCCGGGTCCTTCEEEEEEEECCCT
T ss_pred CCEEEEEEEEeccCCceEEEEeCC-CcEEEEEHHHcChhhhccccccccccchhhhccCCCEEEEEEEeeccc
Confidence 346899999997777788998775 7899999999853200 0001 2489999999999996644
No 55
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=87.40 E-value=1 Score=32.41 Aligned_cols=57 Identities=21% Similarity=0.254 Sum_probs=39.6
Q ss_pred eccceEEEEeeCCCCeeEEEeCCCCccEEEEeeeheecCCCCCcccCCCCCEEEEEEEEc
Q psy9900 7 HTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVG 66 (191)
Q Consensus 7 ~~~~G~vk~~~~~kGfGFI~~~~~~~dvFvh~s~l~~~~~~~g~~~l~~Gd~V~f~~~~~ 66 (191)
....|+|+.-. -||+...-+.+-+-|+|.|++...........++.||.|.+.+..-
T Consensus 9 ~iv~G~V~~i~---~~G~FV~l~~~~~Glihisel~~~~~~~~~~~~~vGd~V~vkV~~v 65 (130)
T 2k4k_A 9 SVYTGKVTGLQ---AYGAFVALDEETQGLVHISEVTHGFVKDINEHLSVGDEVQVKVLAV 65 (130)
T ss_dssp CEEEEEEEEEE---TTEEEEEEETTEEEEEEGGGTSSSCCSCGGGTCCTTCEEEEEEEEE
T ss_pred CEEEEEEEEEe---CCeEEEEECCCcEEEEEHHHCCcccccCccccCCCCCEEEEEEEEE
Confidence 34679999884 3676554444689999999997432111225689999999998753
No 56
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=87.08 E-value=2.6 Score=29.04 Aligned_cols=61 Identities=16% Similarity=0.134 Sum_probs=41.9
Q ss_pred cceeeeeeEEEeecCCCceeEEeCCCCCcEEEeccchhccCcccccccCCCCCEEEEEEEEcCC
Q psy9900 106 AVHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169 (191)
Q Consensus 106 ~~~~~~G~Vk~~~~~kgfGFI~~~d~~~dvF~h~s~~~~~~~~~~~~~l~~G~~V~f~i~~~~k 169 (191)
....+.|+|.... .||....-+.+.+-|+|.+++.......--..++.||.|.+.|..-+.
T Consensus 31 ~G~iv~G~V~~v~---~~G~fV~l~~~~~Gll~~sel~~~~~~~~~~~~~vGd~V~v~V~~vd~ 91 (109)
T 2khj_A 31 KGAIVTGKVTAVD---AKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDR 91 (109)
T ss_dssp SSSEEEEEEEEEC---SSCEEEECSTTCBCCBCTTCCCSSSSSSGGGSCCTTCEEEEEEEEEET
T ss_pred CCCEEEEEEEEEE---CCeEEEEECCCCEEEEEHHHcCcccccChhhccCCCCEEEEEEEEEEC
Confidence 3456899999874 366655555578999999998642100112468999999999987543
No 57
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=86.13 E-value=0.64 Score=40.29 Aligned_cols=63 Identities=27% Similarity=0.454 Sum_probs=46.4
Q ss_pred eeeeEEEeecCCCceeEEeCC-----CCCcEEEeccchhccCcccccccCCCCCEEEEEEEEcCCC---ceeEEeecCCC
Q psy9900 110 VRGIVKFYDSKRGFGFITRLD-----NKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD---IEAINVTGPNG 181 (191)
Q Consensus 110 ~~G~Vk~~~~~kgfGFI~~~d-----~~~dvF~h~s~~~~~~~~~~~~~l~~G~~V~f~i~~~~kg---~~A~~V~~~~~ 181 (191)
..|+.... ..||||+.+.+ +..||||..+.+.. -.|+.||.|.=.+..-+.+ ..-.+|..+++
T Consensus 54 ~~g~le~~--~~g~gflr~~~~~~~~~~~d~yvs~~~ir~-------~~lr~gd~v~g~~r~~~~~ER~faLl~v~~vn~ 124 (422)
T 3ice_A 54 GDGVLEIL--QDGFGFLRSADSSYLAGPDDIYVSPSQIRR-------FNLRTGDTISGKIRPPKEGERYFALLKVNEVNF 124 (422)
T ss_dssp EEEEEEEC--TTSCEEEECGGGTTCCCTTCEEBCHHHHHH-------HTCCTTCEEEEEEECCCSSCCSEEEEEEEEESS
T ss_pred EEEEEEEc--CCCceEeeCCCcCCCCCCCCeeeCHHHHHh-------cCCCCCCEEEEEEeCCCccchHHHHhccCcccC
Confidence 56777665 57999999853 34899999999997 5899999999888765554 23335544443
No 58
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1
Probab=85.83 E-value=1.7 Score=34.12 Aligned_cols=58 Identities=17% Similarity=0.163 Sum_probs=40.0
Q ss_pred eceeccceEEEEeeCCCCeeEEEeCCCCccEEEEeeeheecCCCCCc----------ccCCCCCEEEEEEEE
Q psy9900 4 FEIHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFF----------QSLGLGEIVDFNIGV 65 (191)
Q Consensus 4 ~~~~~~~G~vk~~~~~kGfGFI~~~~~~~dvFvh~s~l~~~~~~~g~----------~~l~~Gd~V~f~~~~ 65 (191)
...+...|+|+.-. -||+...-.. .|.|||.|.|....-.+.. ..++.||.|.+.+..
T Consensus 82 ~vGev~~G~V~~vt---~fG~FVelg~-~dGlVhiS~l~d~~~~d~~~~~w~~~~~~~~~~~Gd~VrVkV~~ 149 (215)
T 2b8k_G 82 FKGEVVDGTVVSCS---QHGFEVQVGP-MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEG 149 (215)
T ss_dssp CTTEEEEEEEEEEE---TTEEEEECTT-SEEEEEGGGSCSSCCCBSSCSSCEEECSSCEEETTCEEEEEEEE
T ss_pred CCCCEEEEEEEEEe---cceEEEEecC-cEEEEEHHHCCccceeccccccceeeccccEECCCCEEEEEEEE
Confidence 34455778888876 4888776665 8999999998632100000 347899999999865
No 59
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.62 E-value=3.3 Score=28.33 Aligned_cols=61 Identities=16% Similarity=0.129 Sum_probs=40.7
Q ss_pred eeccceEEEEeeCCCCee-EEEeCC--CCccEEEEeeeheec-CCCCCcccCCCCCEEEEEEEEcCCC
Q psy9900 6 IHTVRGIVKFYDSKRGFG-FITRLD--NKEDIFVHKSSIVKM-NPKKFFQSLGLGEIVDFNIGVGKKD 69 (191)
Q Consensus 6 ~~~~~G~vk~~~~~kGfG-FI~~~~--~~~dvFvh~s~l~~~-~~~~g~~~l~~Gd~V~f~~~~~~~g 69 (191)
-....|+|+.-- -|| ||...+ .+-+-|+|.|++... ...+....++.||.|.+.+..-..+
T Consensus 13 G~i~~G~V~~v~---~fG~FV~l~~~~~~~~Glvhisel~~~~~~~~~~~~~~~Gd~V~VkV~~vd~~ 77 (103)
T 2eqs_A 13 GDIYNGKVTSIM---QFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVKVKVLSFTGT 77 (103)
T ss_dssp TCEEEEEEEEEC---SSCEEEEECSSSSCCEEEECGGGTSSSSCCCCHHHHCCTTCEEEEEEEEEETT
T ss_pred CCEEEEEEEEEe---ccEEEEEEcCCCCCeEEEEEHHHCCCCcccCCcccEeCCCCEEEEEEEEEECC
Confidence 345789999873 377 566654 267899999999421 0000124589999999999865443
No 60
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.25 E-value=7.8 Score=27.22 Aligned_cols=60 Identities=13% Similarity=0.215 Sum_probs=40.7
Q ss_pred cceeeeeeEEEeecCCCceeEEeCCC-CCcEEEeccchhccCcccccccCCCCCEEEEEEEEcC
Q psy9900 106 AVHTVRGIVKFYDSKRGFGFITRLDN-KEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGK 168 (191)
Q Consensus 106 ~~~~~~G~Vk~~~~~kgfGFI~~~d~-~~dvF~h~s~~~~~~~~~~~~~l~~G~~V~f~i~~~~ 168 (191)
....+.|+|+...+ ||....-++ +.+-|+|++++.......--..++.||.|.+.|..-+
T Consensus 22 vG~iv~G~V~~I~~---fGaFV~l~g~~~~Glvhisel~~~~~~~~~~~~~~Gd~V~VkV~~vd 82 (119)
T 2cqo_A 22 LYTIFQGEVAMVTD---YGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGRE 82 (119)
T ss_dssp TTCEEEEEEEEEET---TEEEEECTTCSSCEEEEHHHHCSSCCSCHHHHCCTTCEEEEEEEEEE
T ss_pred CCCEEEEEEEEEeC---ceEEEEECCCcEEEEEEHHHCCcccccChhhcCCCCCEEEEEEEEEe
Confidence 34668999998843 775444443 4799999999964210001135899999999987643
No 61
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=84.00 E-value=1.4 Score=33.10 Aligned_cols=57 Identities=16% Similarity=0.137 Sum_probs=38.3
Q ss_pred ceeccceEEEEeeCCCCeeEEEeCCCCccEEEEeeeheecCC---CCC-------cccCCCCCEEEEEEEE
Q psy9900 5 EIHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNP---KKF-------FQSLGLGEIVDFNIGV 65 (191)
Q Consensus 5 ~~~~~~G~vk~~~~~kGfGFI~~~~~~~dvFvh~s~l~~~~~---~~g-------~~~l~~Gd~V~f~~~~ 65 (191)
......|+|+.-. -||+...-.. .|.|+|.|.+....- ... ...++.||.|.+.+..
T Consensus 83 ~Gev~~G~V~~v~---~fG~FV~l~~-~dglvhis~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~ 149 (171)
T 1y14_B 83 KGEVVDGTVVSCS---QHGFEVQVGP-MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEG 149 (171)
T ss_dssp TTCEEEEEEEEEE---TTEEEEEETT-EEEEEEGGGSCTTCEECC-----CEECSSCEECTTCEEEEEEEE
T ss_pred CCCEEEEEEEEEe---cCEEEEEecC-eEEEEEHHHCCCCceECcccCceEEeccceEECCCCEEEEEEEE
Confidence 3455778888876 3787666555 899999999853100 000 0347889999998865
No 62
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=83.71 E-value=1.7 Score=30.05 Aligned_cols=58 Identities=17% Similarity=0.147 Sum_probs=39.4
Q ss_pred eccceEEEEeeCCCCeeEEEeCCCCccEEEEeeeheecCCCCCcccCCCCCEEEEEEEEcC
Q psy9900 7 HTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGK 67 (191)
Q Consensus 7 ~~~~G~vk~~~~~kGfGFI~~~~~~~dvFvh~s~l~~~~~~~g~~~l~~Gd~V~f~~~~~~ 67 (191)
....|+|+.-. .||+...-+.+-+-|+|.+++...........++.||.|.+.+..-.
T Consensus 33 ~iv~G~V~~v~---~~G~fV~l~~~~~Gll~~sel~~~~~~~~~~~~~vGd~V~v~V~~vd 90 (109)
T 2khj_A 33 AIVTGKVTAVD---AKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVD 90 (109)
T ss_dssp SEEEEEEEEEC---SSCEEEECSTTCBCCBCTTCCCSSSSSSGGGSCCTTCEEEEEEEEEE
T ss_pred CEEEEEEEEEE---CCeEEEEECCCCEEEEEHHHcCcccccChhhccCCCCEEEEEEEEEE
Confidence 44779999884 35655544446789999999864311112246899999999987643
No 63
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=83.59 E-value=2.1 Score=38.16 Aligned_cols=64 Identities=13% Similarity=0.095 Sum_probs=46.1
Q ss_pred eccceEEEEeeCCCCeeEEEeCCCCccEEEEeeeheecCCC--------CCc-ccCCCCCEEEEEEEEcCCCce
Q psy9900 7 HTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPK--------KFF-QSLGLGEIVDFNIGVGKKDIE 71 (191)
Q Consensus 7 ~~~~G~vk~~~~~kGfGFI~~~~~~~dvFvh~s~l~~~~~~--------~g~-~~l~~Gd~V~f~~~~~~~g~~ 71 (191)
.-..|+|+.-.+--+=-||.... +.+-|+|++++...... ... ..|++||.|.+.+...+.|-+
T Consensus 47 nIY~GkV~rv~p~~~aAFVdiG~-gk~gfLhisei~~~~~~~~~~~~~~~~i~d~lk~Gq~VlVQV~Ke~~g~K 119 (517)
T 2bx2_L 47 NIYKGKITRIEPSLEAAFVDYGA-ERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNK 119 (517)
T ss_dssp CEEEEEEEEEETTTTEEEEESSS-SSCEEEEGGGSCGGGCC-------CCCGGGTCCTTCEEEEEEEECCCTTC
T ss_pred CEEEEEEEEeccCCceEEEEeCC-CcEEEEEHHHcChhhhccccccccccchhhhccCCCEEEEEEEeeccccC
Confidence 34679999988777788998766 68999999998532100 001 238899999999998776533
No 64
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=83.01 E-value=0.71 Score=40.02 Aligned_cols=52 Identities=27% Similarity=0.524 Sum_probs=39.9
Q ss_pred cceEEEEeeCCCCeeEEEeC-----CCCccEEEEeeeheecCCCCCcccCCCCCEEEEEEEEcCCC
Q psy9900 9 VRGIVKFYDSKRGFGFITRL-----DNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 69 (191)
Q Consensus 9 ~~G~vk~~~~~kGfGFI~~~-----~~~~dvFvh~s~l~~~~~~~g~~~l~~Gd~V~f~~~~~~~g 69 (191)
..|++.-- ..||||+.+. .+..||||..+.++.. .|+.||.|.-.+.....+
T Consensus 54 ~~g~le~~--~~g~gflr~~~~~~~~~~~d~yvs~~~ir~~-------~lr~gd~v~g~~r~~~~~ 110 (422)
T 3ice_A 54 GDGVLEIL--QDGFGFLRSADSSYLAGPDDIYVSPSQIRRF-------NLRTGDTISGKIRPPKEG 110 (422)
T ss_dssp EEEEEEEC--TTSCEEEECGGGTTCCCTTCEEBCHHHHHHH-------TCCTTCEEEEEEECCCSS
T ss_pred EEEEEEEc--CCCceEeeCCCcCCCCCCCCeeeCHHHHHhc-------CCCCCCEEEEEEeCCCcc
Confidence 34666544 5799999974 3458999999999974 789999999988755443
No 65
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=82.76 E-value=7.5 Score=32.16 Aligned_cols=61 Identities=15% Similarity=0.091 Sum_probs=42.7
Q ss_pred cceeeeeeEEEeecCCCceeEEeCC--CCCcEEEeccchhccCcccccccCCCCCEEEEEEEEcCC
Q psy9900 106 AVHTVRGIVKFYDSKRGFGFITRLD--NKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169 (191)
Q Consensus 106 ~~~~~~G~Vk~~~~~kgfGFI~~~d--~~~dvF~h~s~~~~~~~~~~~~~l~~G~~V~f~i~~~~k 169 (191)
....+.|+|+...+ ||....-+ .+.+-|+|+|++.....+.--..++.||.|.+.|..-+.
T Consensus 13 vG~iv~G~V~~I~~---fGaFV~L~ey~gveGLvhiSels~~~i~~~~~~~kvGd~V~VkVl~vD~ 75 (308)
T 1q8k_A 13 VEDVVMVNVRSIQE---MGAYVSLLEYNNIEGMIHLSELSRRRIRSINKLIRIGRNECVKVIRVDK 75 (308)
T ss_dssp SCCEEEEEEEEEET---TEEEEESCTTTSCCEEECGGGTSCSSCSCCTTTCSSSCEEEEEEEEEET
T ss_pred CCCEEEEEEEEEeC---cEEEEEECCCCCeEEEEEhHHcCcccccCHHHhcCCCCEEEEEEEEEeC
Confidence 34568999998854 78544443 578999999999642111112458899999999987553
No 66
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=82.36 E-value=1.4 Score=29.08 Aligned_cols=61 Identities=16% Similarity=0.116 Sum_probs=39.4
Q ss_pred eeeeeEEEeecCCCceeEEeCCC--------CCcEEEeccchhccCcccccccCCCCCEEEEEEEEcCCCceeEEee
Q psy9900 109 TVRGIVKFYDSKRGFGFITRLDN--------KEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVT 177 (191)
Q Consensus 109 ~~~G~Vk~~~~~kgfGFI~~~d~--------~~dvF~h~s~~~~~~~~~~~~~l~~G~~V~f~i~~~~kg~~A~~V~ 177 (191)
..+|+|+..+...+- |+-.-+ ..-.-|...+-. -+..|++||.|.|.+...+.++.-+.++
T Consensus 9 ~~~G~V~~id~~~~~--iTi~H~pI~~l~wpaMTM~F~v~~~~------~l~~lk~Gd~V~F~~~~~~~~~~it~i~ 77 (80)
T 2qcp_X 9 SATGVVKGIDLESKK--ITIHHDPIAAVNWPEMTMRFTITPQT------KMSEIKTGDKVAFNFVQQGNLSLLQDIK 77 (80)
T ss_dssp EEEEEEEEEETTTTE--EEEEECCBGGGTBCSEEEEEECCTTC------EECCCCTTCEEEEEEEEETTEEEEEEEE
T ss_pred EEEEEEEEEcCCCCE--EEEEcCCcccCCCCceEEEEEccChh------hhhcCCCCCEEEEEEEEeCCEEEEEEEE
Confidence 478999999766543 443211 122233333222 2579999999999999988777766665
No 67
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=81.99 E-value=3.4 Score=30.92 Aligned_cols=58 Identities=17% Similarity=0.151 Sum_probs=40.0
Q ss_pred ceeeeeeEEEeecCCCceeEEeCCCCCcEEEeccchhcc---Ccccc-------cccCCCCCEEEEEEEEcC
Q psy9900 107 VHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKM---NPKKF-------FQSLGLGEIVDFNIGVGK 168 (191)
Q Consensus 107 ~~~~~G~Vk~~~~~kgfGFI~~~d~~~dvF~h~s~~~~~---~~~~~-------~~~l~~G~~V~f~i~~~~ 168 (191)
.+.+.|+|+... .||+...-.. .|.|+|.|.+... ++... -..++.||.|.+.+..-+
T Consensus 84 Gev~~G~V~~v~---~fG~FV~l~~-~dglvhis~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd 151 (171)
T 1y14_B 84 GEVVDGTVVSCS---QHGFEVQVGP-MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCI 151 (171)
T ss_dssp TCEEEEEEEEEE---TTEEEEEETT-EEEEEEGGGSCTTCEECC-----CEECSSCEECTTCEEEEEEEEEE
T ss_pred CCEEEEEEEEEe---cCEEEEEecC-eEEEEEHHHCCCCceECcccCceEEeccceEECCCCEEEEEEEEEE
Confidence 456899999875 3887666554 8999999998532 00000 044889999999987743
No 68
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=81.97 E-value=1.5 Score=29.60 Aligned_cols=61 Identities=16% Similarity=0.116 Sum_probs=39.5
Q ss_pred eeeeeEEEeecCCCceeEEeCCC--------CCcEEEeccchhccCcccccccCCCCCEEEEEEEEcCCCceeEEee
Q psy9900 109 TVRGIVKFYDSKRGFGFITRLDN--------KEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVT 177 (191)
Q Consensus 109 ~~~G~Vk~~~~~kgfGFI~~~d~--------~~dvF~h~s~~~~~~~~~~~~~l~~G~~V~f~i~~~~kg~~A~~V~ 177 (191)
..+|+|+..+...+- |+-.-+ ..-.-|...+-. -+..|++||.|.|.+...+.++.-+.|+
T Consensus 17 ~~~G~V~~id~~~~~--iTi~H~pI~~l~wpaMTM~F~v~~~~------~l~~lk~Gd~V~F~~~~~~~~~~it~i~ 85 (88)
T 2vb2_X 17 SATGVVKGIDLESKK--ITIHHDPIAAVNWPEMTMRFTITPQT------KMSEIKTGDKVAFNFVQQGNLSLLQDIK 85 (88)
T ss_dssp EEEEEEEEEETTTTE--EEEEECCBGGGTBCSEEEEEECCTTC------EECCCCTTCEEEEEEEEETTEEEEEEEE
T ss_pred EEEEEEEEEcCCCCE--EEEecCCcccCCCCceEEEEEcCChh------hhhcCCCCCEEEEEEEEeCCEEEEEEEE
Confidence 478999999866543 443211 122223333222 2579999999999999988777766665
No 69
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1
Probab=81.80 E-value=4.9 Score=31.51 Aligned_cols=59 Identities=15% Similarity=0.108 Sum_probs=41.2
Q ss_pred cceeeeeeEEEeecCCCceeEEeCCCCCcEEEeccchhccC---cccc-------cccCCCCCEEEEEEEEcC
Q psy9900 106 AVHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMN---PKKF-------FQSLGLGEIVDFNIGVGK 168 (191)
Q Consensus 106 ~~~~~~G~Vk~~~~~kgfGFI~~~d~~~dvF~h~s~~~~~~---~~~~-------~~~l~~G~~V~f~i~~~~ 168 (191)
..+.+.|+|.... .||+...-.. .|.++|++.+.... +... -..++.||.|.+.|..-+
T Consensus 83 vGev~~G~V~~vt---~fG~FVelg~-~dGlVhiS~l~d~~~~d~~~~~w~~~~~~~~~~~Gd~VrVkV~~vd 151 (215)
T 2b8k_G 83 KGEVVDGTVVSCS---QHGFEVQVGP-MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCI 151 (215)
T ss_dssp TTEEEEEEEEEEE---TTEEEEECTT-SEEEEEGGGSCSSCCCBSSCSSCEEECSSCEEETTCEEEEEEEEEE
T ss_pred CCCEEEEEEEEEe---cceEEEEecC-cEEEEEHHHCCccceeccccccceeeccccEECCCCEEEEEEEEEE
Confidence 3466899998875 3888776654 89999999985320 0000 034889999999987743
No 70
>2l55_A SILB,silver efflux protein, MFP component of the components proton antiporter metal...; APO form, AG(I)-binding site; NMR {Cupriavidus metallidurans}
Probab=81.75 E-value=2.1 Score=28.45 Aligned_cols=61 Identities=11% Similarity=0.107 Sum_probs=39.5
Q ss_pred eeeeEEEeecCCCceeEEeCCC--------CCcEEEeccchhccCcccccccCCCCCEEEEEEEEcCC-CceeEEeecCC
Q psy9900 110 VRGIVKFYDSKRGFGFITRLDN--------KEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK-DIEAINVTGPN 180 (191)
Q Consensus 110 ~~G~Vk~~~~~kgfGFI~~~d~--------~~dvF~h~s~~~~~~~~~~~~~l~~G~~V~f~i~~~~k-g~~A~~V~~~~ 180 (191)
.+|+|+..+... |+-.-+ ..-.-|...+-. -+..|++||.|.|++...+. ++.-+.|+..+
T Consensus 6 ~~G~V~~vd~~~----iTi~H~pI~~l~wPaMTM~F~v~~~~------~l~~lk~Gd~V~F~~~~~~~g~~~it~i~~~~ 75 (82)
T 2l55_A 6 AVGRIQSIGERS----LIIAHEAIPSAQWGAMTMEFAAPPAG------LPQGLKAGDRVAFSFRLDPHGMATLVTVAPQV 75 (82)
T ss_dssp EEEEEEECCSSE----EEEEECCCTTTTCCCEEEEEECCTTC------CCSSCSTTCEEEEEEEEETTTEEEEEEEEECC
T ss_pred EeEEEEEEcccc----EEEecCCccccCCCceEEEEEcCChh------HhhcCCCCCEEEEEEEECCCCeEEEEEEEecC
Confidence 578888887664 443211 122333333222 25789999999999999988 47777777543
No 71
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=80.96 E-value=3.6 Score=31.14 Aligned_cols=58 Identities=10% Similarity=0.012 Sum_probs=36.9
Q ss_pred eeccceEEEEeeCCCCee-EEEeC-CCCccEEEEeeeheecCCCCCcccCCCCCEEEEEEEEc
Q psy9900 6 IHTVRGIVKFYDSKRGFG-FITRL-DNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVG 66 (191)
Q Consensus 6 ~~~~~G~vk~~~~~kGfG-FI~~~-~~~~dvFvh~s~l~~~~~~~g~~~l~~Gd~V~f~~~~~ 66 (191)
.....|+|+.- .-|| ||..+ ..+-+-++|.|.+......+....++.||.|.+.+..-
T Consensus 16 G~iv~G~V~~i---~~fGaFV~L~e~~gveGLvhiSels~~~v~~~~~~~~vGd~V~vkVl~v 75 (175)
T 2a19_A 16 DDIVMVNVQQI---AEMGAYVKLLEYDNIEGMILLSELSRRRIRSIQKLIRVGKNDVAVVLRV 75 (175)
T ss_dssp TCEEEEEEEEE---ETTEEEEEETTTTTCEEEEECC--------CCCCCCCTTSEEEEEEEEE
T ss_pred CCEEEEEEEEE---ecceEEEEEcCCCCcEEEEEHHHcCCcccCCHHHcCCCCCEEEEEEEEE
Confidence 45578999987 3577 56664 24678999999996532112235688999999998764
No 72
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=80.23 E-value=7.5 Score=29.34 Aligned_cols=60 Identities=10% Similarity=0.015 Sum_probs=38.0
Q ss_pred cceeeeeeEEEeecCCCce-eEEeC-CCCCcEEEeccchhccCcccccccCCCCCEEEEEEEEcC
Q psy9900 106 AVHTVRGIVKFYDSKRGFG-FITRL-DNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGK 168 (191)
Q Consensus 106 ~~~~~~G~Vk~~~~~kgfG-FI~~~-d~~~dvF~h~s~~~~~~~~~~~~~l~~G~~V~f~i~~~~ 168 (191)
....+.|+|... ..|| ||.-+ ..+-+-++|+|++.....+.--..++.||.|.+.|..-+
T Consensus 15 ~G~iv~G~V~~i---~~fGaFV~L~e~~gveGLvhiSels~~~v~~~~~~~~vGd~V~vkVl~vd 76 (175)
T 2a19_A 15 IDDIVMVNVQQI---AEMGAYVKLLEYDNIEGMILLSELSRRRIRSIQKLIRVGKNDVAVVLRVD 76 (175)
T ss_dssp TTCEEEEEEEEE---ETTEEEEEETTTTTCEEEEECC--------CCCCCCCTTSEEEEEEEEEE
T ss_pred CCCEEEEEEEEE---ecceEEEEEcCCCCcEEEEEHHHcCCcccCCHHHcCCCCCEEEEEEEEEE
Confidence 456789999887 3478 45554 246899999999964311111246889999999988754
No 73
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16
Probab=80.01 E-value=2.4 Score=39.39 Aligned_cols=49 Identities=10% Similarity=0.115 Sum_probs=38.6
Q ss_pred eeeeeeEEEeecCCCc--eeEEeCCCCCcEEEec-cchhccCcccccccCCCCCEEEEEEEEc
Q psy9900 108 HTVRGIVKFYDSKRGF--GFITRLDNKEDIFVHK-SSIVKMNPKKFFQSLGLGEIVDFNIGVG 167 (191)
Q Consensus 108 ~~~~G~Vk~~~~~kgf--GFI~~~d~~~dvF~h~-s~~~~~~~~~~~~~l~~G~~V~f~i~~~ 167 (191)
..++|++.-- .+|| ||+.+++..+|||++- .++..+ -.||.|.+++...
T Consensus 31 ~l~~G~l~~~--~~~~~~gfv~~~~~~~di~I~~~~~~n~A---------~~GD~V~V~i~~~ 82 (760)
T 2vnu_D 31 VLYQGNIQIS--EYNFLEGSVSLPRFSKPVLIVGQKNLNRA---------FNGDQVIVELLPQ 82 (760)
T ss_dssp SEEEEEEEEC--SSBTTEEEECCSSSSSCEEEESHHHHTTC---------CTTCEEEEEECCG
T ss_pred CEEEEEEEEe--cCCCccEEEEcCCCCCCEEEcChhhhccc---------cCCCEEEEEEecc
Confidence 3578887653 6789 9999998789999997 666643 5899999999743
No 74
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=79.05 E-value=0.55 Score=31.58 Aligned_cols=58 Identities=14% Similarity=0.170 Sum_probs=38.0
Q ss_pred eceeccceEEEEeeCCCCee-EEEeCC-CCccEEEEee-eheecCCCCCcccCCCCCEEEEEEEEc
Q psy9900 4 FEIHTVRGIVKFYDSKRGFG-FITRLD-NKEDIFVHKS-SIVKMNPKKFFQSLGLGEIVDFNIGVG 66 (191)
Q Consensus 4 ~~~~~~~G~vk~~~~~kGfG-FI~~~~-~~~dvFvh~s-~l~~~~~~~g~~~l~~Gd~V~f~~~~~ 66 (191)
..-....|+|+ -. .|| |+..++ ++-+=++|.| ++....-......+ .||.|.+.+..-
T Consensus 10 ~vG~~~~G~V~-v~---~fG~FVel~~~~~~eGLvhis~el~~~~~~~~~~~~-~Gd~V~VkV~~v 70 (88)
T 1luz_A 10 NAGDVIKGRVY-EK---DYALYIYLFDYPHFEAILAESVKMHMDRYVEYRDKL-VGKTVKVKVIRV 70 (88)
T ss_dssp CTTCEEEEEEE-EE---TTEEEEEETTCTTSEEEEGGGSSCCHHHHHHHHHHH-TTCEEEEEEEEE
T ss_pred CCCCEEEEEEE-EE---ccEEEEEECCCCCeEEEEEeeHHhCcccccCHhHEe-CCCEEEEEEEEE
Confidence 34456789998 53 466 777765 3689999999 88532000001345 899999998764
No 75
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=77.15 E-value=9.9 Score=28.92 Aligned_cols=60 Identities=12% Similarity=0.068 Sum_probs=37.4
Q ss_pred cceeeeeeEEEeecCCCce-eEEeC-CCCCcEEEeccchhccCcccccccCCCCCEEEEEEEEcC
Q psy9900 106 AVHTVRGIVKFYDSKRGFG-FITRL-DNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGK 168 (191)
Q Consensus 106 ~~~~~~G~Vk~~~~~kgfG-FI~~~-d~~~dvF~h~s~~~~~~~~~~~~~l~~G~~V~f~i~~~~ 168 (191)
....+.|+|+... .|| ||.-+ ..+.+-++|+|++.....+.--..++.||.|.+.|..-+
T Consensus 15 ~G~iv~G~V~~I~---~fGaFV~L~e~~g~eGLvhiSels~~~v~~~~~~~~vGd~V~VkVl~vD 76 (182)
T 1kl9_A 15 VEDVVMVNVRSIA---EMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVD 76 (182)
T ss_dssp TTCEEEEEEEEEC---SSEEEEEETTTTTEEEEEEGGGC------------CTTCEEEEEEEEEE
T ss_pred CCCEEEEEEEEEe---ccEEEEEEccCCCcEEEEEHHHCCCcccCCHHHhcCCCCEEEEEEEEEE
Confidence 3456899998873 488 55553 346899999999964311111245889999999988754
No 76
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=76.25 E-value=4.9 Score=30.66 Aligned_cols=59 Identities=12% Similarity=0.064 Sum_probs=36.5
Q ss_pred eeccceEEEEeeCCCCee-EEEeC-CCCccEEEEeeeheecCCCCCcccCCCCCEEEEEEEEcC
Q psy9900 6 IHTVRGIVKFYDSKRGFG-FITRL-DNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGK 67 (191)
Q Consensus 6 ~~~~~G~vk~~~~~kGfG-FI~~~-~~~~dvFvh~s~l~~~~~~~g~~~l~~Gd~V~f~~~~~~ 67 (191)
.....|+|+.-. -|| ||..+ .++-+=++|.|++......+....++.||.|.+.+..-+
T Consensus 16 G~iv~G~V~~I~---~fGaFV~L~e~~g~eGLvhiSels~~~v~~~~~~~~vGd~V~VkVl~vD 76 (182)
T 1kl9_A 16 EDVVMVNVRSIA---EMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVD 76 (182)
T ss_dssp TCEEEEEEEEEC---SSEEEEEETTTTTEEEEEEGGGC------------CTTCEEEEEEEEEE
T ss_pred CCEEEEEEEEEe---ccEEEEEEccCCCcEEEEEHHHCCCcccCCHHHhcCCCCEEEEEEEEEE
Confidence 455789999874 578 66664 346789999999964321112346789999999987643
No 77
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=75.86 E-value=15 Score=29.72 Aligned_cols=59 Identities=19% Similarity=0.173 Sum_probs=41.6
Q ss_pred ceeeeeeEEEeecCCCce-eEEeCC-CCCcEEEeccchhccCcccccccCCCCCEEEEEEEEcC
Q psy9900 107 VHTVRGIVKFYDSKRGFG-FITRLD-NKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGK 168 (191)
Q Consensus 107 ~~~~~G~Vk~~~~~kgfG-FI~~~d-~~~dvF~h~s~~~~~~~~~~~~~l~~G~~V~f~i~~~~ 168 (191)
...+.|+|.... .|| ||.-++ .+.+-|+|+|++.......--..++.||.|.+.+..-+
T Consensus 12 Gdiv~G~V~~I~---~fGaFV~L~e~~gieGlIhiSels~~~v~~~~~~~kvGd~V~vkVi~vD 72 (275)
T 3aev_A 12 GEFVVATVKRIH---NYGAFLELDEYPGKEAFMHISEVASTWVRNIRDYLKEGQKVVAKVIRVD 72 (275)
T ss_dssp TCEEEEEEEEEE---TTEEEEEETTSTTCEEEEEGGGSCSSCCSCGGGTCCTTCEEEEEEEEEE
T ss_pred CCEEEEEEEEEE---CcEEEEEECCCCCeEEEEEHHHcCcccccCHHhccCCCCEEEEEEEEEE
Confidence 456889999874 377 455553 47899999999964311111246899999999998754
No 78
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=75.83 E-value=7.7 Score=32.12 Aligned_cols=59 Identities=14% Similarity=0.169 Sum_probs=41.7
Q ss_pred eeccceEEEEeeCCCCee-EEEeCC-CCccEEEEeeeheecCCCCCcccCCCCCEEEEEEEEcC
Q psy9900 6 IHTVRGIVKFYDSKRGFG-FITRLD-NKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGK 67 (191)
Q Consensus 6 ~~~~~G~vk~~~~~kGfG-FI~~~~-~~~dvFvh~s~l~~~~~~~g~~~l~~Gd~V~f~~~~~~ 67 (191)
.....|+|+.-.+ || ||...+ ++-+-|+|.|++......+-...++.||.|.+.+..-+
T Consensus 14 G~iv~G~V~~I~~---fGaFV~L~ey~gveGLvhiSels~~~i~~~~~~~kvGd~V~VkVl~vD 74 (308)
T 1q8k_A 14 EDVVMVNVRSIQE---MGAYVSLLEYNNIEGMIHLSELSRRRIRSINKLIRIGRNECVKVIRVD 74 (308)
T ss_dssp CCEEEEEEEEEET---TEEEEESCTTTSCCEEECGGGTSCSSCSCCTTTCSSSCEEEEEEEEEE
T ss_pred CCEEEEEEEEEeC---cEEEEEECCCCCeEEEEEhHHcCcccccCHHHhcCCCCEEEEEEEEEe
Confidence 4457899999864 77 555543 57899999999964321112345789999999987644
No 79
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=71.26 E-value=5.7 Score=38.06 Aligned_cols=48 Identities=13% Similarity=0.153 Sum_probs=37.9
Q ss_pred eeeeeeEEEeecCCCc--eeEEeCCCCCcEEEec-cchhccCcccccccCCCCCEEEEEEEE
Q psy9900 108 HTVRGIVKFYDSKRGF--GFITRLDNKEDIFVHK-SSIVKMNPKKFFQSLGLGEIVDFNIGV 166 (191)
Q Consensus 108 ~~~~G~Vk~~~~~kgf--GFI~~~d~~~dvF~h~-s~~~~~~~~~~~~~l~~G~~V~f~i~~ 166 (191)
..++|++.. ..+|| ||+.+++..+|||+.- .++..+ -.||.|.+++..
T Consensus 248 ~l~~G~l~v--~~~~~~egfV~~~~~~~DI~I~~~~~~n~A---------~~GD~V~V~i~~ 298 (977)
T 2wp8_J 248 VLYQGNIQI--SEYNFLEGSVSLPRFSKPVLIVGQKNLNRA---------FNGDQVIVELLP 298 (977)
T ss_dssp SSEEEEEEE--CSSBTTEEEECCTTCSSCEEEESHHHHTTC---------CTTCEEEEEECC
T ss_pred CEEEEEEEE--ccCCCccEEEEcCCCCCCEEEcChHHhhhC---------cCCCEEEEEEec
Confidence 346787765 36889 9999988789999997 666643 589999999964
No 80
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=70.61 E-value=24 Score=26.39 Aligned_cols=57 Identities=25% Similarity=0.204 Sum_probs=39.7
Q ss_pred eeeeeeEEEeecCCCceeEEeCCCCCcEEEeccchhccCcc-----------cccccCCCCCEEEEEEEEcC
Q psy9900 108 HTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPK-----------KFFQSLGLGEIVDFNIGVGK 168 (191)
Q Consensus 108 ~~~~G~Vk~~~~~kgfGFI~~~d~~~dvF~h~s~~~~~~~~-----------~~~~~l~~G~~V~f~i~~~~ 168 (191)
..+.|+|+... .||+...-. ..+-++|.|++....-. ..-..++.||.|.+.+..-+
T Consensus 83 ev~~G~V~~v~---~~G~fV~l~-~~eglvhis~l~~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd 150 (187)
T 1go3_E 83 ELIEGEVVDVV---EFGSFVRLG-PLDGLIHVSQIMDDYVSYDPKREAIIGKETGKVLEIGDYVRARIVAIS 150 (187)
T ss_dssp CEEEEEEEEEE---TTEEEEECS-SSEEEEEGGGSCSSCEEECCC--CEEETTTCCEECTTCEEEEEEEEEE
T ss_pred CEEEEEEEEEe---CcEEEEEEc-CccEEEEhHHhCCCcceECCccceEEecCCCeEEcCCCEEEEEEEEEE
Confidence 46889999875 377666554 48999999998632100 01245889999999988754
No 81
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=69.71 E-value=5.4 Score=26.19 Aligned_cols=60 Identities=17% Similarity=0.107 Sum_probs=38.1
Q ss_pred ccceEEEEeeCCCCeeEEEeCCCC--------ccEEEEeeeheecCCCCCcccCCCCCEEEEEEEEcCCCceeeEe
Q psy9900 8 TVRGIVKFYDSKRGFGFITRLDNK--------EDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINV 75 (191)
Q Consensus 8 ~~~G~vk~~~~~kGfGFI~~~~~~--------~dvFvh~s~l~~~~~~~g~~~l~~Gd~V~f~~~~~~~g~~A~~v 75 (191)
..+|+|+..|...|- |+...+. --.-|...+=. -+..|+.||.|.|.+.....++.-..+
T Consensus 9 ~~~G~V~~id~~~~~--iTi~H~pI~~l~wpaMTM~F~v~~~~------~l~~lk~Gd~V~F~~~~~~~~~~it~i 76 (80)
T 2qcp_X 9 SATGVVKGIDLESKK--ITIHHDPIAAVNWPEMTMRFTITPQT------KMSEIKTGDKVAFNFVQQGNLSLLQDI 76 (80)
T ss_dssp EEEEEEEEEETTTTE--EEEEECCBGGGTBCSEEEEEECCTTC------EECCCCTTCEEEEEEEEETTEEEEEEE
T ss_pred EEEEEEEEEcCCCCE--EEEEcCCcccCCCCceEEEEEccChh------hhhcCCCCCEEEEEEEEeCCEEEEEEE
Confidence 478999999977654 5543222 11222222211 257899999999999988766655444
No 82
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=69.00 E-value=12 Score=30.28 Aligned_cols=58 Identities=19% Similarity=0.169 Sum_probs=41.0
Q ss_pred eeccceEEEEeeCCCCee-EEEeCC-CCccEEEEeeeheecCCCCCcccCCCCCEEEEEEEEc
Q psy9900 6 IHTVRGIVKFYDSKRGFG-FITRLD-NKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVG 66 (191)
Q Consensus 6 ~~~~~G~vk~~~~~kGfG-FI~~~~-~~~dvFvh~s~l~~~~~~~g~~~l~~Gd~V~f~~~~~ 66 (191)
.....|+|+.-.+ || ||..++ .+-+-|+|.|++....-.+-...++.||.|.+.+..-
T Consensus 12 Gdiv~G~V~~I~~---fGaFV~L~e~~gieGlIhiSels~~~v~~~~~~~kvGd~V~vkVi~v 71 (275)
T 3aev_A 12 GEFVVATVKRIHN---YGAFLELDEYPGKEAFMHISEVASTWVRNIRDYLKEGQKVVAKVIRV 71 (275)
T ss_dssp TCEEEEEEEEEET---TEEEEEETTSTTCEEEEEGGGSCSSCCSCGGGTCCTTCEEEEEEEEE
T ss_pred CCEEEEEEEEEEC---cEEEEEECCCCCeEEEEEHHHcCcccccCHHhccCCCCEEEEEEEEE
Confidence 3557899999853 66 666654 4789999999996432111224689999999998764
No 83
>3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=68.84 E-value=5.4 Score=29.90 Aligned_cols=58 Identities=19% Similarity=0.173 Sum_probs=39.1
Q ss_pred ceeeeeeEEEeecCCCceeEEeCCCCCcEEEeccchhccCcc----------cccccCCCCCEEEEEEEEcC
Q psy9900 107 VHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPK----------KFFQSLGLGEIVDFNIGVGK 168 (191)
Q Consensus 107 ~~~~~G~Vk~~~~~kgfGFI~~~d~~~dvF~h~s~~~~~~~~----------~~~~~l~~G~~V~f~i~~~~ 168 (191)
.+.+.|+|+..+. ||+...-+ .-+.|+|.+.+...... ..-..++.||.|.+.+..-+
T Consensus 85 Gev~~G~V~~v~~---fG~FV~l~-~~~glVh~s~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~VrvkV~~vd 152 (172)
T 3h0g_G 85 GEVVDAIVTTVNK---MGFFANIG-PLNVFVSSHLVPPDMKFDPTANPPNYSGEDQVIEKGSNVRLKIVGTR 152 (172)
T ss_dssp TCEEECCCCEEET---TEEECCBT-TBCCEEEGGGSCTTCCCBSSSSSCBEESSSCEECSSCCEEEEEEEEE
T ss_pred CCEEEEEEEEEEc---ceEEEEeC-CeEEEEEHHHCCCccccCcccccceEecCCcEECCCCEEEEEEEEEE
Confidence 3567888888753 88776665 34599999998532100 00135789999999988643
No 84
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1
Probab=68.77 E-value=8.4 Score=28.66 Aligned_cols=59 Identities=15% Similarity=0.204 Sum_probs=39.0
Q ss_pred cceeeeeeEEEeecCCCceeEEeCCCCCcEEEeccchhcc---Cccc---------ccccCCCCCEEEEEEEEcC
Q psy9900 106 AVHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKM---NPKK---------FFQSLGLGEIVDFNIGVGK 168 (191)
Q Consensus 106 ~~~~~~G~Vk~~~~~kgfGFI~~~d~~~dvF~h~s~~~~~---~~~~---------~~~~l~~G~~V~f~i~~~~ 168 (191)
..+.+.|+|.... .||+...-. .-+.++|+|.+... ++.. .-..++.||.|.+.+..-+
T Consensus 81 ~Gev~~G~V~~v~---~fG~fV~l~-~~~glvhis~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd 151 (172)
T 2c35_B 81 KGEVVDAVVTQVN---KVGLFTEIG-PMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTR 151 (172)
T ss_dssp TTCEEEEEEEEEE---TTEEEEEET-TEEEEEEGGGSCTTEEEESSSSSCEEEETTSCSEEETTCEEEEEEEEEE
T ss_pred CCCEEEEEEEEEe---CCEEEEEEC-CEEEEEEHHHCCCCcEECCCCCccEEEeCCCCEEECCCCEEEEEEEEEE
Confidence 3456889998874 378766655 34499999988531 0000 0124888999999987743
No 85
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=68.58 E-value=5.7 Score=26.58 Aligned_cols=60 Identities=17% Similarity=0.107 Sum_probs=38.0
Q ss_pred ccceEEEEeeCCCCeeEEEeCCCC--------ccEEEEeeeheecCCCCCcccCCCCCEEEEEEEEcCCCceeeEe
Q psy9900 8 TVRGIVKFYDSKRGFGFITRLDNK--------EDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINV 75 (191)
Q Consensus 8 ~~~G~vk~~~~~kGfGFI~~~~~~--------~dvFvh~s~l~~~~~~~g~~~l~~Gd~V~f~~~~~~~g~~A~~v 75 (191)
..+|+|+..|...|- |+...+. --.-|...+=. -+..|++||+|.|.+.....++....+
T Consensus 17 ~~~G~V~~id~~~~~--iTi~H~pI~~l~wpaMTM~F~v~~~~------~l~~lk~Gd~V~F~~~~~~~~~~it~i 84 (88)
T 2vb2_X 17 SATGVVKGIDLESKK--ITIHHDPIAAVNWPEMTMRFTITPQT------KMSEIKTGDKVAFNFVQQGNLSLLQDI 84 (88)
T ss_dssp EEEEEEEEEETTTTE--EEEEECCBGGGTBCSEEEEEECCTTC------EECCCCTTCEEEEEEEEETTEEEEEEE
T ss_pred EEEEEEEEEcCCCCE--EEEecCCcccCCCCceEEEEEcCChh------hhhcCCCCCEEEEEEEEeCCEEEEEEE
Confidence 478999999977654 5543221 11222222211 257899999999999988766655444
No 86
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=68.43 E-value=10 Score=28.56 Aligned_cols=57 Identities=25% Similarity=0.199 Sum_probs=38.4
Q ss_pred eeccceEEEEeeCCCCeeEEEeCCCCccEEEEeeeheecCCC-----------CCcccCCCCCEEEEEEEEc
Q psy9900 6 IHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPK-----------KFFQSLGLGEIVDFNIGVG 66 (191)
Q Consensus 6 ~~~~~G~vk~~~~~kGfGFI~~~~~~~dvFvh~s~l~~~~~~-----------~g~~~l~~Gd~V~f~~~~~ 66 (191)
.....|+|+.-. -||+...-. .-+-++|.|.+....-. +.-..++.||.|.+.+..-
T Consensus 82 Gev~~G~V~~v~---~~G~fV~l~-~~eglvhis~l~~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~v 149 (187)
T 1go3_E 82 YELIEGEVVDVV---EFGSFVRLG-PLDGLIHVSQIMDDYVSYDPKREAIIGKETGKVLEIGDYVRARIVAI 149 (187)
T ss_dssp TCEEEEEEEEEE---TTEEEEECS-SSEEEEEGGGSCSSCEEECCC--CEEETTTCCEECTTCEEEEEEEEE
T ss_pred CCEEEEEEEEEe---CcEEEEEEc-CccEEEEhHHhCCCcceECCccceEEecCCCeEEcCCCEEEEEEEEE
Confidence 345778998876 367665554 37999999998632100 0124588999999988653
No 87
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1
Probab=68.17 E-value=4.4 Score=30.25 Aligned_cols=57 Identities=14% Similarity=0.132 Sum_probs=36.6
Q ss_pred ceeccceEEEEeeCCCCeeEEEeCCCCccEEEEeeeheecCC---C---------CCcccCCCCCEEEEEEEE
Q psy9900 5 EIHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNP---K---------KFFQSLGLGEIVDFNIGV 65 (191)
Q Consensus 5 ~~~~~~G~vk~~~~~kGfGFI~~~~~~~dvFvh~s~l~~~~~---~---------~g~~~l~~Gd~V~f~~~~ 65 (191)
.-+...|+|+.-. .||+...-.. -+.|+|.|.|....- . ..-..++.||.|.+.+..
T Consensus 81 ~Gev~~G~V~~v~---~fG~fV~l~~-~~glvhis~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~ 149 (172)
T 2c35_B 81 KGEVVDAVVTQVN---KVGLFTEIGP-MSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVG 149 (172)
T ss_dssp TTCEEEEEEEEEE---TTEEEEEETT-EEEEEEGGGSCTTEEEESSSSSCEEEETTSCSEEETTCEEEEEEEE
T ss_pred CCCEEEEEEEEEe---CCEEEEEECC-EEEEEEHHHCCCCcEECCCCCccEEEeCCCCEEECCCCEEEEEEEE
Confidence 3455678888875 4777665554 459999998852100 0 001247889999998865
No 88
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B*
Probab=67.59 E-value=7.5 Score=31.38 Aligned_cols=61 Identities=13% Similarity=0.050 Sum_probs=41.8
Q ss_pred cceeeeeeEEEeecCCCce-eEEeCC-CCCcEEEeccchhccCcccccccCCCCCEEEEEEEEcCC
Q psy9900 106 AVHTVRGIVKFYDSKRGFG-FITRLD-NKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169 (191)
Q Consensus 106 ~~~~~~G~Vk~~~~~kgfG-FI~~~d-~~~dvF~h~s~~~~~~~~~~~~~l~~G~~V~f~i~~~~k 169 (191)
....+.|+|....+ || |+.-.+ .+.+-|+|.|++.....+.--..++.||.|.+.+..-+.
T Consensus 11 vG~iv~G~V~~I~~---~GaFV~l~e~~~~~GlihiSels~~~v~~~~~~~~vGd~V~VkVi~vd~ 73 (266)
T 3cw2_C 11 EGEILIATVKQVFD---YGSYVSLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVIVKVIRVDR 73 (266)
T ss_dssp TTCEEEEEEEECCS---SSBEEEETTTTSEECBBCGGGSSCSSCCCHHHHSCTTCEEEEEECCCCS
T ss_pred CCCEEEEEEEEEec---cEEEEEEcCCCCeEEEEEhHHcCcccccCHHHhCcCCCEEEEEEEEEeC
Confidence 34568999988743 77 455543 578999999999642100111358999999999988653
No 89
>2l55_A SILB,silver efflux protein, MFP component of the components proton antiporter metal...; APO form, AG(I)-binding site; NMR {Cupriavidus metallidurans}
Probab=67.10 E-value=11 Score=24.80 Aligned_cols=59 Identities=12% Similarity=0.131 Sum_probs=37.3
Q ss_pred cceEEEEeeCCCCeeEEEeCCCC-c-------cEEEEeeeheecCCCCCcccCCCCCEEEEEEEEcCC-CceeeEeec
Q psy9900 9 VRGIVKFYDSKRGFGFITRLDNK-E-------DIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK-DIEAINVTG 77 (191)
Q Consensus 9 ~~G~vk~~~~~kGfGFI~~~~~~-~-------dvFvh~s~l~~~~~~~g~~~l~~Gd~V~f~~~~~~~-g~~A~~v~~ 77 (191)
.+|+|+..|... |+...+. . -.-|...+= . -+..|+.||+|.|.+...+. ++....+..
T Consensus 6 ~~G~V~~vd~~~----iTi~H~pI~~l~wPaMTM~F~v~~~--~----~l~~lk~Gd~V~F~~~~~~~g~~~it~i~~ 73 (82)
T 2l55_A 6 AVGRIQSIGERS----LIIAHEAIPSAQWGAMTMEFAAPPA--G----LPQGLKAGDRVAFSFRLDPHGMATLVTVAP 73 (82)
T ss_dssp EEEEEEECCSSE----EEEEECCCTTTTCCCEEEEEECCTT--C----CCSSCSTTCEEEEEEEEETTTEEEEEEEEE
T ss_pred EeEEEEEEcccc----EEEecCCccccCCCceEEEEEcCCh--h----HhhcCCCCCEEEEEEEECCCCeEEEEEEEe
Confidence 579999998765 5533211 1 122222211 1 25789999999999999887 466555554
No 90
>3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=66.14 E-value=3.3 Score=31.13 Aligned_cols=57 Identities=19% Similarity=0.162 Sum_probs=36.2
Q ss_pred ceeccceEEEEeeCCCCeeEEEeCCCCccEEEEeeeheecCCCC----------CcccCCCCCEEEEEEEE
Q psy9900 5 EIHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKK----------FFQSLGLGEIVDFNIGV 65 (191)
Q Consensus 5 ~~~~~~G~vk~~~~~kGfGFI~~~~~~~dvFvh~s~l~~~~~~~----------g~~~l~~Gd~V~f~~~~ 65 (191)
..+...|+|+.-. -||+...-+. -+.|+|.|.+....-.+ .-..++.||.|.+.+..
T Consensus 84 ~Gev~~G~V~~v~---~fG~FV~l~~-~~glVh~s~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~VrvkV~~ 150 (172)
T 3h0g_G 84 RGEVVDAIVTTVN---KMGFFANIGP-LNVFVSSHLVPPDMKFDPTANPPNYSGEDQVIEKGSNVRLKIVG 150 (172)
T ss_dssp TTCEEECCCCEEE---TTEEECCBTT-BCCEEEGGGSCTTCCCBSSSSSCBEESSSCEECSSCCEEEEEEE
T ss_pred CCCEEEEEEEEEE---cceEEEEeCC-eEEEEEHHHCCCccccCcccccceEecCCcEECCCCEEEEEEEE
Confidence 3344567777665 3787766554 45999999995321000 01357899999998864
No 91
>4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E
Probab=63.06 E-value=34 Score=25.38 Aligned_cols=59 Identities=24% Similarity=0.207 Sum_probs=41.3
Q ss_pred cceeeeeeEEEeecCCCceeEEeCCCCCcEEEeccchhccCc-----------ccccccCCCCCEEEEEEEEcC
Q psy9900 106 AVHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNP-----------KKFFQSLGLGEIVDFNIGVGK 168 (191)
Q Consensus 106 ~~~~~~G~Vk~~~~~kgfGFI~~~d~~~dvF~h~s~~~~~~~-----------~~~~~~l~~G~~V~f~i~~~~ 168 (191)
..+.+.|+|...+ .||+....+ .-+-++|.+.+....- +..-..++.||.|.+.|..-+
T Consensus 81 ~Gev~~G~V~~v~---~~G~fv~l~-~~~glvh~s~l~~d~~~~d~~~~~~~g~~~~~~~~~Gd~VrvkV~~v~ 150 (180)
T 4ayb_E 81 VQEVVEGEVLQVD---NYGVFVNLG-PMDGLVHISQITDDTLKYDNVRGIIFGEKSKKVIQKGDKVRARVISVA 150 (180)
T ss_dssp TTCEEEEEEEEEE---TTEEEEECS-SSEEEEEGGGSCSSCEEECSSSCCEEETTTCCCCCTTCEEEEEEEEEC
T ss_pred CCCEEEEEEeeec---cceEEEEEC-CccceEEeeecCCCccccchhcceEEEeccCeEECCCCEEEEEEEEEe
Confidence 3456889998874 377766654 5789999999975410 011135899999999998754
No 92
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=57.44 E-value=30 Score=25.95 Aligned_cols=57 Identities=14% Similarity=0.042 Sum_probs=39.0
Q ss_pred ceeeeeeEEEeecCCCceeEEeCCC----------CCcEEEeccchhccCcccccccCCCCCEEEEEEEE
Q psy9900 107 VHTVRGIVKFYDSKRGFGFITRLDN----------KEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGV 166 (191)
Q Consensus 107 ~~~~~G~Vk~~~~~kgfGFI~~~d~----------~~dvF~h~s~~~~~~~~~~~~~l~~G~~V~f~i~~ 166 (191)
.....|+|..... ||++..-.. +.+-++|++++.......-...+++||.|...+..
T Consensus 58 GdiV~G~V~~V~~---~ga~V~I~~v~~~~~~~~~~~~Gll~isei~~~~~~~~~~~~~~GD~V~akVi~ 124 (179)
T 3m7n_A 58 GDVVLGRVVDLRN---SIALIEVSSKKGENRGPSNRGIGILHVSNVDEGYVKEISEAVGYLDILKARVIG 124 (179)
T ss_dssp TCEEEEEEEEECS---SEEEEEEEEETTCCSCCTTCEEEEEEGGGTTSSCCSSGGGTCCTTCEEEEEEEE
T ss_pred CCEEEEEEEEEeC---CcEEEEEccccCcccccccCeeEEEEHHHcCcchhhCHhhcCCCCCEEEEEEEC
Confidence 4568899988643 444333222 57899999999764221234678999999999987
No 93
>4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E
Probab=57.20 E-value=25 Score=26.14 Aligned_cols=57 Identities=25% Similarity=0.214 Sum_probs=39.3
Q ss_pred eeccceEEEEeeCCCCeeEEEeCCCCccEEEEeeeheecCC-----------CCCcccCCCCCEEEEEEEEc
Q psy9900 6 IHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNP-----------KKFFQSLGLGEIVDFNIGVG 66 (191)
Q Consensus 6 ~~~~~G~vk~~~~~kGfGFI~~~~~~~dvFvh~s~l~~~~~-----------~~g~~~l~~Gd~V~f~~~~~ 66 (191)
.+-..|+|+.-+ -||+-...+ .-|-++|.+.+....- ...-..++.||.|.|.+..-
T Consensus 82 Gev~~G~V~~v~---~~G~fv~l~-~~~glvh~s~l~~d~~~~d~~~~~~~g~~~~~~~~~Gd~VrvkV~~v 149 (180)
T 4ayb_E 82 QEVVEGEVLQVD---NYGVFVNLG-PMDGLVHISQITDDTLKYDNVRGIIFGEKSKKVIQKGDKVRARVISV 149 (180)
T ss_dssp TCEEEEEEEEEE---TTEEEEECS-SSEEEEEGGGSCSSCEEECSSSCCEEETTTCCCCCTTCEEEEEEEEE
T ss_pred CCEEEEEEeeec---cceEEEEEC-CccceEEeeecCCCccccchhcceEEEeccCeEECCCCEEEEEEEEE
Confidence 445678888876 367666654 4789999999975420 01123589999999998753
No 94
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=55.91 E-value=47 Score=22.84 Aligned_cols=62 Identities=13% Similarity=0.140 Sum_probs=37.5
Q ss_pred ccceeeeeeEEEeecCCCceeEEeCC-CCCcEEEeccchhccCc-ccccccCCCCCEEEEEEEEcCC
Q psy9900 105 PAVHTVRGIVKFYDSKRGFGFITRLD-NKEDIFVHKSSIVKMNP-KKFFQSLGLGEIVDFNIGVGKK 169 (191)
Q Consensus 105 ~~~~~~~G~Vk~~~~~kgfGFI~~~d-~~~dvF~h~s~~~~~~~-~~~~~~l~~G~~V~f~i~~~~k 169 (191)
-..+.+.|+|+.. ..||++..-+ .+...+.|.+....... ..--..++.||.|.+.|..-+.
T Consensus 20 ~~G~i~~G~V~~v---~~fG~fV~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~ 83 (119)
T 1wi5_A 20 KPGMLLTGTVSSL---EDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKG 83 (119)
T ss_dssp CTTCEEEEEEEEE---CSSEEEEECCCSSCEEEEEHHHHHHHHHHHSSSCCCCTTCEEEEEEEECCT
T ss_pred CCCCEEEEEEEEE---eCceEEEEECCCCeEEEEEEecccccccccCccCEeCCCCEEEEEEEEEeC
Confidence 3446789999987 4588555444 34555555544321000 0001578999999999988654
No 95
>4hti_A Receptor-type tyrosine-protein phosphatase N2; phogrin, IA-2BETA, protein-tyrosine phosphatase, transmembra protein, diabetes, autoimmunity; 1.95A {Homo sapiens} PDB: 4htj_A
Probab=55.26 E-value=5.4 Score=27.49 Aligned_cols=44 Identities=14% Similarity=0.292 Sum_probs=30.6
Q ss_pred CCCeeEEEeCCC--------------------CccEEEEeeeheecCCCCCcccCCCCCEEEEEEEEcCCCceeeEee
Q psy9900 19 KRGFGFITRLDN--------------------KEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVT 76 (191)
Q Consensus 19 ~kGfGFI~~~~~--------------------~~dvFvh~s~l~~~~~~~g~~~l~~Gd~V~f~~~~~~~g~~A~~v~ 76 (191)
+.-||||..+.. ....|.+++-+.. .|.|.+..+++++.|..|.
T Consensus 8 deeygYIvt~~~~l~~~~G~~l~~~la~~l~l~~~~F~~isV~g~--------------aVTFrV~~N~~n~taadVA 71 (99)
T 4hti_A 8 EEARGYIVTDRDPLRPEEGRRLVEDVARLLQVPSSAFADVEVLGP--------------AVTFKVSANVQNVTTEDVE 71 (99)
T ss_dssp --CCEEEEESCSSCCHHHHHHHHHHHHHHTTCCGGGEEEEEEETT--------------EEEEEECCCTTCCCHHHHH
T ss_pred cceeEEEEECCCCCCHHHHHHHHHHHHHHhCCchhheeeeeecCc--------------eEEEEeccCCCCCCHHHHH
Confidence 456899986533 2356777776654 4999999999998776664
No 96
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B*
Probab=52.56 E-value=5.6 Score=32.17 Aligned_cols=59 Identities=14% Similarity=0.030 Sum_probs=40.4
Q ss_pred eeccceEEEEeeCCCCee-EEEeCC-CCccEEEEeeeheecCCCCCcccCCCCCEEEEEEEEcC
Q psy9900 6 IHTVRGIVKFYDSKRGFG-FITRLD-NKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGK 67 (191)
Q Consensus 6 ~~~~~G~vk~~~~~kGfG-FI~~~~-~~~dvFvh~s~l~~~~~~~g~~~l~~Gd~V~f~~~~~~ 67 (191)
.....|+|+.-.+ || ||..++ .+-+-|+|.|++......+-...++.||.|.+.+..-.
T Consensus 12 G~iv~G~V~~I~~---~GaFV~l~e~~~~~GlihiSels~~~v~~~~~~~~vGd~V~VkVi~vd 72 (266)
T 3cw2_C 12 GEILIATVKQVFD---YGSYVSLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVIVKVIRVD 72 (266)
T ss_dssp TCEEEEEEEECCS---SSBEEEETTTTSEECBBCGGGSSCSSCCCHHHHSCTTCEEEEEECCCC
T ss_pred CCEEEEEEEEEec---cEEEEEEcCCCCeEEEEEhHHcCcccccCHHHhCcCCCEEEEEEEEEe
Confidence 3457899998743 66 666653 56899999999964311111134889999999987644
No 97
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=46.01 E-value=59 Score=31.94 Aligned_cols=60 Identities=7% Similarity=-0.021 Sum_probs=43.0
Q ss_pred cceeeeeeEEEeecCCCceeEEeCCCCCcEEEeccchhccC-cccccccCCCCCEEEEEEEEcC
Q psy9900 106 AVHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMN-PKKFFQSLGLGEIVDFNIGVGK 168 (191)
Q Consensus 106 ~~~~~~G~Vk~~~~~kgfGFI~~~d~~~dvF~h~s~~~~~~-~~~~~~~l~~G~~V~f~i~~~~ 168 (191)
..+.+.|+|+.. ..||....-+.+-+-++|+|++.... ...--..++.||.|.+.|..-+
T Consensus 902 ~G~iv~G~V~~V---~~fGaFV~L~~gveGLVHiSelsd~~~v~~p~~v~kvGd~V~vkVl~VD 962 (1219)
T 3psi_A 902 KGSIIPVRVERF---WHNDIICTTNSEVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYID 962 (1219)
T ss_dssp TTCEEEEEEEEE---CSSCEEEECTTSCEEEECTTSSSSTTSCSCSTTTSCTTCEEEEEEEEEE
T ss_pred CCCEEEEEEEEE---ecceEEEEeCCCceEEEEHHHcCCCcccCCHHHcCCCCCEEEEEEEEEE
Confidence 456789999876 34776655566789999999997531 0011245899999999998754
No 98
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=42.50 E-value=54 Score=27.41 Aligned_cols=51 Identities=14% Similarity=0.003 Sum_probs=38.2
Q ss_pred eccceEEEEeeCCCCeeEEEeCCCCccEEEEeeeheecCCCCCcccCCCCCEEEEEEEEcC
Q psy9900 7 HTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGK 67 (191)
Q Consensus 7 ~~~~G~vk~~~~~kGfGFI~~~~~~~dvFvh~s~l~~~~~~~g~~~l~~Gd~V~f~~~~~~ 67 (191)
...+|+|+..+ ++.=||.. + +-+-++|.+.+... ..++.||+|.+.+..-.
T Consensus 136 eIV~G~V~ri~--~~~v~VDl-G-k~EgiLp~sE~ip~------E~~~vGD~Vkv~V~~V~ 186 (344)
T 1hh2_P 136 TVTTAEVIRVM--GEWADIRI-G-KLETRLPKKEWIPG------EEIKAGDLVKVYIIDVV 186 (344)
T ss_dssp CEEEEEEEEEC--SSEEEEEE-T-TEEEEEEGGGSCTT------CCCCTTCEEEEEEEEEE
T ss_pred CEEEEEEEEEe--cCcEEEEe-C-CeEEEEeHHHcCCC------cCCCCCCEEEEEEEEEE
Confidence 45789999986 44445544 3 67999999999632 58899999999987543
No 99
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=41.54 E-value=59 Score=27.21 Aligned_cols=52 Identities=13% Similarity=-0.063 Sum_probs=39.0
Q ss_pred ceeeeeeEEEeecCCCceeEEeCCCCCcEEEeccchhccCcccccccCCCCCEEEEEEEEcC
Q psy9900 107 VHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGK 168 (191)
Q Consensus 107 ~~~~~G~Vk~~~~~kgfGFI~~~d~~~dvF~h~s~~~~~~~~~~~~~l~~G~~V~f~i~~~~ 168 (191)
....+|+|...+ + +|.+... ++-+-++|.+++... ..++.||+|.+.+..-+
T Consensus 135 GeIV~G~V~ri~--~-~~v~VDl-Gk~EgiLp~sE~ip~------E~~~vGD~Vkv~V~~V~ 186 (344)
T 1hh2_P 135 GTVTTAEVIRVM--G-EWADIRI-GKLETRLPKKEWIPG------EEIKAGDLVKVYIIDVV 186 (344)
T ss_dssp TCEEEEEEEEEC--S-SEEEEEE-TTEEEEEEGGGSCTT------CCCCTTCEEEEEEEEEE
T ss_pred CCEEEEEEEEEe--c-CcEEEEe-CCeEEEEeHHHcCCC------cCCCCCCEEEEEEEEEE
Confidence 346899999985 3 3444444 378999999999743 58899999999887644
No 100
>3u7z_A Putative metal binding protein rumgna_00854; the binding protein, transport protein, structural genomics, center for structural genomics; 1.30A {Ruminococcus gnavus}
Probab=41.46 E-value=44 Score=22.87 Aligned_cols=48 Identities=17% Similarity=0.295 Sum_probs=27.8
Q ss_pred CCCce-eEEeCCC-----CCcEEEeccch-hccCcccccccCCCCCEEEEEEEEc
Q psy9900 120 KRGFG-FITRLDN-----KEDIFVHKSSI-VKMNPKKFFQSLGLGEIVDFNIGVG 167 (191)
Q Consensus 120 ~kgfG-FI~~~d~-----~~dvF~h~s~~-~~~~~~~~~~~l~~G~~V~f~i~~~ 167 (191)
..-|| ||+..++ .+.-|-+++.- .....-.+--.|+.||.|+|.+..+
T Consensus 46 ~s~~G~fITsI~G~~ad~~~~~yW~~~vng~~~~~Ga~~~~v~dGD~i~~~~t~~ 100 (101)
T 3u7z_A 46 SGEYGLFITTVDEETADDSKQQWWCITKGGEQVNTSADQTPVSDGDAFELTLKEG 100 (101)
T ss_dssp CCTTSCEEEEETTEECCGGGTEEEEEEETTEECCSCGGGCBCCTTCEEEEEEEEC
T ss_pred cccccceEEEEcCEecCCCCCCEEEEEECCEEhhhchhheEecCCCEEEEEEecC
Confidence 44588 9997553 24455544331 1111001234589999999998865
No 101
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=40.48 E-value=79 Score=25.03 Aligned_cols=60 Identities=15% Similarity=0.225 Sum_probs=42.2
Q ss_pred ceeeeeeEEEeecCCCceeEEeCCCCCcEEEeccchhccCc---ccccccCCCCCEEEEEEEEcCC
Q psy9900 107 VHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNP---KKFFQSLGLGEIVDFNIGVGKK 169 (191)
Q Consensus 107 ~~~~~G~Vk~~~~~kgfGFI~~~d~~~dvF~h~s~~~~~~~---~~~~~~l~~G~~V~f~i~~~~k 169 (191)
.....|+|... ..+|+...-+...+-++|++++..... ..-...|++||.|...|..-..
T Consensus 75 GDiV~G~V~~v---~~~ga~VdI~~~~~GlL~isei~~~~~~~~~~~~~~l~vGD~V~arVi~v~~ 137 (251)
T 2je6_I 75 NDIVIGLVEDV---EIYGWVVDIKAPYKAYLPASNLLGRSINVGEDLRRYLDVGDYVIARIENFDR 137 (251)
T ss_dssp TCEEEEEEEEE---CSSEEEEECSSSSCEEEEHHHHHTSCCCTTCCCSSSCCTTCEEEEEEEEEET
T ss_pred CCEEEEEEEEE---eCceEEEEcCCCeEEEEEHHHhcCCccccccchhhcCCCCCEEEEEEEEECC
Confidence 35678888876 345666666667899999999985310 0112379999999999887544
No 102
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=38.15 E-value=54 Score=32.21 Aligned_cols=57 Identities=7% Similarity=-0.004 Sum_probs=40.5
Q ss_pred eccceEEEEeeCCCCeeEEEeCCCCccEEEEeeeheecC-CCCCcccCCCCCEEEEEEEEc
Q psy9900 7 HTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMN-PKKFFQSLGLGEIVDFNIGVG 66 (191)
Q Consensus 7 ~~~~G~vk~~~~~kGfGFI~~~~~~~dvFvh~s~l~~~~-~~~g~~~l~~Gd~V~f~~~~~ 66 (191)
....|+|+.. .-||....-+.+-+-+||+|.|.... ..+....++.||.|.+.+..-
T Consensus 904 ~iv~G~V~~V---~~fGaFV~L~~gveGLVHiSelsd~~~v~~p~~v~kvGd~V~vkVl~V 961 (1219)
T 3psi_A 904 SIIPVRVERF---WHNDIICTTNSEVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYI 961 (1219)
T ss_dssp CEEEEEEEEE---CSSCEEEECTTSCEEEECTTSSSSTTSCSCSTTTSCTTCEEEEEEEEE
T ss_pred CEEEEEEEEE---ecceEEEEeCCCceEEEEHHHcCCCcccCCHHHcCCCCCEEEEEEEEE
Confidence 3467999876 34776665566789999999997542 111234589999999998764
No 103
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=36.54 E-value=1.5e+02 Score=23.01 Aligned_cols=60 Identities=18% Similarity=0.146 Sum_probs=42.2
Q ss_pred ceeeeeeEEEeecCCCceeEEeCCCCCcEEEeccchhcc-CcccccccCCCCCEEEEEEEEcCC
Q psy9900 107 VHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKM-NPKKFFQSLGLGEIVDFNIGVGKK 169 (191)
Q Consensus 107 ~~~~~G~Vk~~~~~kgfGFI~~~d~~~dvF~h~s~~~~~-~~~~~~~~l~~G~~V~f~i~~~~k 169 (191)
.....|+|... ..+|+...-+...+-++|++++... ....-...|++||.|...+..-..
T Consensus 58 GDiV~G~V~~v---~~~~a~V~I~~~~~g~l~isev~~~~~~~~~~~~l~~GD~V~arVi~v~~ 118 (229)
T 2ba0_A 58 GDVVIGIIREV---AANGWAVDIYSPYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLNIDP 118 (229)
T ss_dssp TCEEEEEEEEE---CSSEEEEECSSSSCEEEEGGGCTTCCTTSCGGGTCCTTCEEEEEEEEECT
T ss_pred CCEEEEEEEEE---eCCeEEEEeCCCeEEEEEHHHccccccccchhcccCCCCEEEEEEEEECC
Confidence 35678888776 3456666666578899999999842 111123579999999999887554
No 104
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=36.40 E-value=95 Score=24.55 Aligned_cols=58 Identities=16% Similarity=0.256 Sum_probs=37.9
Q ss_pred ccceEEEEeeCCCCeeEEEeCCCCccEEEEeeeheecCC---CCCcccCCCCCEEEEEEEEcCC
Q psy9900 8 TVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNP---KKFFQSLGLGEIVDFNIGVGKK 68 (191)
Q Consensus 8 ~~~G~vk~~~~~kGfGFI~~~~~~~dvFvh~s~l~~~~~---~~g~~~l~~Gd~V~f~~~~~~~ 68 (191)
...|+|..-. .||+...-+..-+-++|.+++..... .+-...|++||.|..++..-..
T Consensus 77 iV~G~V~~v~---~~ga~VdI~~~~~GlL~isei~~~~~~~~~~~~~~l~vGD~V~arVi~v~~ 137 (251)
T 2je6_I 77 IVIGLVEDVE---IYGWVVDIKAPYKAYLPASNLLGRSINVGEDLRRYLDVGDYVIARIENFDR 137 (251)
T ss_dssp EEEEEEEEEC---SSEEEEECSSSSCEEEEHHHHHTSCCCTTCCCSSSCCTTCEEEEEEEEEET
T ss_pred EEEEEEEEEe---CceEEEEcCCCeEEEEEHHHhcCCccccccchhhcCCCCCEEEEEEEEECC
Confidence 3567777763 34555555546789999999974310 0112378999999999876443
No 105
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=36.36 E-value=30 Score=32.26 Aligned_cols=61 Identities=20% Similarity=0.263 Sum_probs=41.4
Q ss_pred cceeeeeeEEEeecCCCceeEEeCCCCCcEEEeccchhccCcccccccCCCCCEEEEEEEEcCC
Q psy9900 106 AVHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169 (191)
Q Consensus 106 ~~~~~~G~Vk~~~~~kgfGFI~~~d~~~dvF~h~s~~~~~~~~~~~~~l~~G~~V~f~i~~~~k 169 (191)
..+.+.|+|+... .||....-+.+.+-++|+|++...-...--..++.||.|.+.|..-+.
T Consensus 654 vG~iv~G~V~~V~---~fGaFV~l~~~~eGLVhiS~Lsd~~v~d~~~~~~vGd~V~VkVi~VD~ 714 (785)
T 3bzc_A 654 PGMVLEGVVTNVT---NFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKVMEVDI 714 (785)
T ss_dssp TTCBCCCEEEEEE---TTEEEEECSSSSEEEEETTTSCSSCCSCHHHHCCTTCCCCCBEEEEET
T ss_pred CCCEEEEEEEEEe---cCCeEEEeCCCcEEEEEHHHcCccccCChhheeCCCCEEEEEEEEEEC
Confidence 3466889998773 477555555578999999999742100011358899999998887543
No 106
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=35.93 E-value=68 Score=23.89 Aligned_cols=55 Identities=18% Similarity=0.073 Sum_probs=35.6
Q ss_pred ccceEEEEeeCCCCee-EEEeCC---------CCccEEEEeeeheecCCCCCcccCCCCCEEEEEEEE
Q psy9900 8 TVRGIVKFYDSKRGFG-FITRLD---------NKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGV 65 (191)
Q Consensus 8 ~~~G~vk~~~~~kGfG-FI~~~~---------~~~dvFvh~s~l~~~~~~~g~~~l~~Gd~V~f~~~~ 65 (191)
-..|+|+.-. .|| |+.... .+-+=++|+|++....-.+-...+++||.|..++..
T Consensus 60 iV~G~V~~V~---~~ga~V~I~~v~~~~~~~~~~~~Gll~isei~~~~~~~~~~~~~~GD~V~akVi~ 124 (179)
T 3m7n_A 60 VVLGRVVDLR---NSIALIEVSSKKGENRGPSNRGIGILHVSNVDEGYVKEISEAVGYLDILKARVIG 124 (179)
T ss_dssp EEEEEEEEEC---SSEEEEEEEEETTCCSCCTTCEEEEEEGGGTTSSCCSSGGGTCCTTCEEEEEEEE
T ss_pred EEEEEEEEEe---CCcEEEEEccccCcccccccCeeEEEEHHHcCcchhhCHhhcCCCCCEEEEEEEC
Confidence 3567887764 233 443322 156889999998753211124678999999999986
No 107
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=33.80 E-value=30 Score=22.23 Aligned_cols=19 Identities=37% Similarity=0.282 Sum_probs=12.8
Q ss_pred eEEEEeeC---CCCeeEEEeCC
Q psy9900 11 GIVKFYDS---KRGFGFITRLD 29 (191)
Q Consensus 11 G~vk~~~~---~kGfGFI~~~~ 29 (191)
|.|+.-.. .||||||.-.+
T Consensus 36 G~i~~v~i~~~srGfaFV~F~~ 57 (89)
T 3d2w_A 36 GEVVDVFIPKPFRAFAFVTFAD 57 (89)
T ss_dssp SCEEEEECCSSCCSEEEEEESC
T ss_pred CCEEEEEEeeCCCCEEEEEECC
Confidence 44544433 48999999776
No 108
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=32.83 E-value=1.4e+02 Score=23.12 Aligned_cols=60 Identities=8% Similarity=0.107 Sum_probs=42.0
Q ss_pred ceeeeeeEEEeecCCCceeEEeCCCCCcEEEeccchhccC----cccccccCCCCCEEEEEEEEcCC
Q psy9900 107 VHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMN----PKKFFQSLGLGEIVDFNIGVGKK 169 (191)
Q Consensus 107 ~~~~~G~Vk~~~~~kgfGFI~~~d~~~dvF~h~s~~~~~~----~~~~~~~l~~G~~V~f~i~~~~k 169 (191)
.....|+|.... .+|+...-+...+-++|++++.... ...-...|++||.|...+..-..
T Consensus 67 GDiV~G~V~~v~---~~~~~V~I~~~~~g~l~isei~~~~~~~~~~~~~~~l~~GD~V~a~Vi~v~~ 130 (235)
T 2z0s_A 67 GDVVIGLIQSVG---IMNWFVDINSPYVAVLSVQDFLGRPFNPAVDDMQSLLKVGDYIKAKVVAFDK 130 (235)
T ss_dssp TCCEEEEEEEEC---SSEEEEECSSSSCEEEEHHHHHTSCCCTTTTCCTTSSCTTCEEEEEEEEECT
T ss_pred CCEEEEEEEEEe---CCeEEEEeCCCeEEEEEHHHhCCCccccchhhHhhcCCCCCEEEEEEEEECC
Confidence 356788888763 3566666665789999999997510 00112379999999999888654
No 109
>3fkh_A Putative pyridoxamine 5'-phosphate oxidase; NP_601736.1, STR genomics, joint center for structural genomics, JCSG; HET: P33; 2.51A {Corynebacterium glutamicum atcc 13032}
Probab=32.61 E-value=59 Score=23.12 Aligned_cols=56 Identities=18% Similarity=0.054 Sum_probs=34.0
Q ss_pred ccceeeeeeEEEeecCCCceeEEeCC---CCCcEEEeccchhccCcccccccCCCCCEEEEEEEEcC
Q psy9900 105 PAVHTVRGIVKFYDSKRGFGFITRLD---NKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGK 168 (191)
Q Consensus 105 ~~~~~~~G~Vk~~~~~kgfGFI~~~d---~~~dvF~h~s~~~~~~~~~~~~~l~~G~~V~f~i~~~~ 168 (191)
++.....|++.+.+ .|+=+|.|-+ .+..||||-+.-. .+..+..+..|.|++...+
T Consensus 17 lL~~~~~g~La~~~--dg~P~vvPv~f~~~~~~iyfh~a~g~------K~~~i~~~~~V~f~vd~~~ 75 (138)
T 3fkh_A 17 RLQSVSLGRVVVRR--SDEMDIFPVNFIVDKGAIYIRTAEGN------KLFSMNLNHDVLFEADEVK 75 (138)
T ss_dssp HHTTCSEEEEEEEE--TTEEEEEEEEEEEETTEEEEEEEC--------------CCSEEEEEEEEEE
T ss_pred HHccCCEEEEEEee--CCEEEEEEEEEEEECCEEEEEeCCCh------HHHHhhcCCCEEEEEEECC
Confidence 34445568888764 6666776632 1357999987522 3678899999999999754
No 110
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=32.53 E-value=23 Score=33.08 Aligned_cols=58 Identities=21% Similarity=0.306 Sum_probs=39.6
Q ss_pred eccceEEEEeeCCCCeeEEEeCCCCccEEEEeeeheecCCCCCcccCCCCCEEEEEEEEcC
Q psy9900 7 HTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGK 67 (191)
Q Consensus 7 ~~~~G~vk~~~~~kGfGFI~~~~~~~dvFvh~s~l~~~~~~~g~~~l~~Gd~V~f~~~~~~ 67 (191)
....|+|+... -||....-+.+.+-+||+|+|......+....++.||.|.+.+..-.
T Consensus 656 ~iv~G~V~~V~---~fGaFV~l~~~~eGLVhiS~Lsd~~v~d~~~~~~vGd~V~VkVi~VD 713 (785)
T 3bzc_A 656 MVLEGVVTNVT---NFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKVMEVD 713 (785)
T ss_dssp CBCCCEEEEEE---TTEEEEECSSSSEEEEETTTSCSSCCSCHHHHCCTTCCCCCBEEEEE
T ss_pred CEEEEEEEEEe---cCCeEEEeCCCcEEEEEHHHcCccccCChhheeCCCCEEEEEEEEEE
Confidence 34678888774 47755544556799999999975321111235889999999987643
No 111
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=31.60 E-value=53 Score=20.01 Aligned_cols=40 Identities=5% Similarity=0.160 Sum_probs=28.8
Q ss_pred CCceeEEeCCCCCcEEEeccchhccCcccccccCCCCCEEEEEEEEc
Q psy9900 121 RGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVG 167 (191)
Q Consensus 121 kgfGFI~~~d~~~dvF~h~s~~~~~~~~~~~~~l~~G~~V~f~i~~~ 167 (191)
+..+.+..-+....|-+..+-... -.|++||.|+|.+..+
T Consensus 10 ~~~~~~~kv~~kGqItIPkeiR~~-------Lgi~~Gd~l~i~~~~~ 49 (59)
T 1yfb_A 10 KSTGIVRKVDELGRVVIPIELRRT-------LGIAEKDALEIYVDDE 49 (59)
T ss_dssp CCCCEEEECCTTCEEECCHHHHHH-------TTCCTTCEEEEEEETT
T ss_pred hhceeEEEECCCCEEEeCHHHHHH-------cCCCCCCEEEEEEECC
Confidence 445666666666777777766664 4789999999988643
No 112
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=30.88 E-value=10 Score=35.04 Aligned_cols=57 Identities=21% Similarity=0.224 Sum_probs=0.0
Q ss_pred eccceEEEEeeCCCCeeEEEeCCCCccEEEEeeeheecCCCCCcccCCCCCEEEEEEEEc
Q psy9900 7 HTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVG 66 (191)
Q Consensus 7 ~~~~G~vk~~~~~kGfGFI~~~~~~~dvFvh~s~l~~~~~~~g~~~l~~Gd~V~f~~~~~ 66 (191)
....|+|+.- .-||....-..+.+-|+|.|.+....-.+.-..++.||.|.+.+..-
T Consensus 629 ~i~~G~V~~i---~~fGaFVel~~g~eGLvHiSel~~~~v~~~~~~~~vGd~V~VkVi~v 685 (723)
T 3cdi_A 629 RVYTGKVTRI---VDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEV 685 (723)
T ss_dssp ------------------------------------------------------------
T ss_pred cEEEEEEEEE---ecceEEEEeCCCceEEEEHHHcCCccccCcccccCCCCEEEEEEEEE
Confidence 3457888776 45884444444689999999996531111223588999999998753
No 113
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=30.86 E-value=1.3e+02 Score=20.50 Aligned_cols=56 Identities=14% Similarity=0.100 Sum_probs=34.9
Q ss_pred eccceEEEEeeCCCCee-EEEeCCCCccEEEEeeehee----cCCCCCcccCCCCCEEEEEEEEcCC
Q psy9900 7 HTVRGIVKFYDSKRGFG-FITRLDNKEDIFVHKSSIVK----MNPKKFFQSLGLGEIVDFNIGVGKK 68 (191)
Q Consensus 7 ~~~~G~vk~~~~~kGfG-FI~~~~~~~dvFvh~s~l~~----~~~~~g~~~l~~Gd~V~f~~~~~~~ 68 (191)
....|+|+.. .-|| ||.....+.+.+.|.+.... .. .-..++.||.|.+.+..-..
T Consensus 23 ~i~~G~V~~v---~~fG~fV~l~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~Gd~V~vkV~~vd~ 83 (119)
T 1wi5_A 23 MLLTGTVSSL---EDHGYLVDIGVDGTRAFLPLLKAQEYIRQKN---KGAKLKVGQYLNCIVEKVKG 83 (119)
T ss_dssp CEEEEEEEEE---CSSEEEEECCCSSCEEEEEHHHHHHHHHHHS---SSCCCCTTCEEEEEEEECCT
T ss_pred CEEEEEEEEE---eCceEEEEECCCCeEEEEEEecccccccccC---ccCEeCCCCEEEEEEEEEeC
Confidence 3467999987 4577 45544234555555554321 00 12578999999999987543
No 114
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=30.29 E-value=81 Score=22.15 Aligned_cols=37 Identities=27% Similarity=0.360 Sum_probs=26.8
Q ss_pred ccchhccCcccccccCCCCCEEEEEEEEcCCCceeEEeecCCC
Q psy9900 139 KSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNG 181 (191)
Q Consensus 139 ~s~~~~~~~~~~~~~l~~G~~V~f~i~~~~kg~~A~~V~~~~~ 181 (191)
.+.+... ..|++||.|.|....+..+.--+.|+.-.+
T Consensus 83 W~~FV~~------~~L~~GD~~~F~~~~~~~~~l~I~~rr~~~ 119 (130)
T 1wid_A 83 WSRFVKE------KNLRAGDVVSFSRSNGQDQQLYIGWKSRSG 119 (130)
T ss_dssp HHHHHHH------TTCCTTCEEEEEECCSSSCCEEEEEECCCS
T ss_pred hHHHHHH------cCCCCCCEEEEEEecCCCcEEEEEEEECCC
Confidence 4566654 689999999999988666655666665544
No 115
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=28.60 E-value=12 Score=34.62 Aligned_cols=60 Identities=20% Similarity=0.225 Sum_probs=0.0
Q ss_pred eeeeeeEEEeecCCCceeEEeCCCCCcEEEeccchhccCcccccccCCCCCEEEEEEEEcC-CC
Q psy9900 108 HTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGK-KD 170 (191)
Q Consensus 108 ~~~~G~Vk~~~~~kgfGFI~~~d~~~dvF~h~s~~~~~~~~~~~~~l~~G~~V~f~i~~~~-kg 170 (191)
..+.|+|... ..||....-..+.+-++|+|.+.......--..++.||.|.+.+..-+ +|
T Consensus 629 ~i~~G~V~~i---~~fGaFVel~~g~eGLvHiSel~~~~v~~~~~~~~vGd~V~VkVi~vd~~g 689 (723)
T 3cdi_A 629 RVYTGKVTRI---VDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQG 689 (723)
T ss_dssp ----------------------------------------------------------------
T ss_pred cEEEEEEEEE---ecceEEEEeCCCceEEEEHHHcCCccccCcccccCCCCEEEEEEEEECCCC
Confidence 3467777765 448854444447899999999965210011135899999999987744 45
No 116
>2ckz_B C25, DNA-directed RNA polymerase III 25 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae}
Probab=27.56 E-value=1.2e+02 Score=23.41 Aligned_cols=62 Identities=15% Similarity=0.064 Sum_probs=35.7
Q ss_pred CceeceeccceEEEEeeCCCCeeEEEeCCCCccEEEEeeeheecCC--------------CCCcccCCCCCEEEEEEEE
Q psy9900 1 MTKFEIHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNP--------------KKFFQSLGLGEIVDFNIGV 65 (191)
Q Consensus 1 ~~~~~~~~~~G~vk~~~~~kGfGFI~~~~~~~dvFvh~s~l~~~~~--------------~~g~~~l~~Gd~V~f~~~~ 65 (191)
|+....+...|+|+.-+ .||+-..-++.-+=.||.+++....- ...-..++.||.|.|.+..
T Consensus 77 f~p~vGEv~~G~Is~Vt---~fGifVeL~g~~eglv~~s~l~~d~~~fd~~~~~~vg~~~e~t~~~~~~Gd~VrvrV~~ 152 (218)
T 2ckz_B 77 FKPFLGEIVTGWISKCT---AEGIKVSLLGIFDDIFIPQNMLFEGCYYTPEESAWIWPMDEETKLYFDVNEKIRFRIER 152 (218)
T ss_dssp ECCCTTCEEEEEEEEEE---TTEEEEECTTSCCCEEEETTTSCTTCEEETTTTEEEEECC--CEEEECTTCEEEEEEEE
T ss_pred ecCCCCCEEEEEEEEEc---cCcEEEEccCccceEEEcHHHCCCCcEEcCcCceEEeeccccCCcEEcCCCEEEEEEEE
Confidence 34445566778888875 46766655333333466666643210 0012347889999888754
No 117
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=27.34 E-value=34 Score=22.29 Aligned_cols=20 Identities=30% Similarity=0.418 Sum_probs=15.8
Q ss_pred ceEEEEeeCCCCeeEEEeCC
Q psy9900 10 RGIVKFYDSKRGFGFITRLD 29 (191)
Q Consensus 10 ~G~vk~~~~~kGfGFI~~~~ 29 (191)
.|.|......||||||.-.+
T Consensus 47 ~G~v~~v~i~~g~afV~f~~ 66 (97)
T 2xnq_A 47 YGHIMQINIKNAFGFIQFDN 66 (97)
T ss_dssp GSCEEEEEECSSEEEEEESS
T ss_pred cCCEEEEEEeCCEEEEEECC
Confidence 47777777779999998765
No 118
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=26.06 E-value=14 Score=34.17 Aligned_cols=58 Identities=22% Similarity=0.143 Sum_probs=0.0
Q ss_pred eeeeeeEEEeecCCCceeEEeCCCCCcEEEeccchhccCcccccccCCCCCEEEEEEEEcC
Q psy9900 108 HTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGK 168 (191)
Q Consensus 108 ~~~~G~Vk~~~~~kgfGFI~~~d~~~dvF~h~s~~~~~~~~~~~~~l~~G~~V~f~i~~~~ 168 (191)
..+.|+|+.. ..||....-..+.+-++|+|++.......--..++.||.|.+.+..-+
T Consensus 639 ~v~~G~V~~I---~~fGaFVel~~g~eGLvHiSels~~rv~~~~d~~kvGD~V~VkVi~iD 696 (726)
T 4aid_A 639 KIYDGKVVKV---VDFGAFVNFFGAKDGLVHVSQISNERVAKPSDVLKEGQMVKVKLLGFD 696 (726)
T ss_dssp -------------------------------------------------------------
T ss_pred cEEEEEEEEE---eccEEEEEECCCcEEEEEHHHcCcccccCccccCCCCCEEEEEEEEEC
Confidence 4467777665 458866665557899999999975310011235899999999988754
No 119
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=25.92 E-value=2.2e+02 Score=21.98 Aligned_cols=58 Identities=19% Similarity=0.169 Sum_probs=37.8
Q ss_pred ccceEEEEeeCCCCeeEEEeCCCCccEEEEeeeheec-CCCCCcccCCCCCEEEEEEEEcCC
Q psy9900 8 TVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKM-NPKKFFQSLGLGEIVDFNIGVGKK 68 (191)
Q Consensus 8 ~~~G~vk~~~~~kGfGFI~~~~~~~dvFvh~s~l~~~-~~~~g~~~l~~Gd~V~f~~~~~~~ 68 (191)
...|+|..-. .+|+...-+..-+-++|.+++... ...+-...|++||.|..++..-..
T Consensus 60 iV~G~V~~v~---~~~a~V~I~~~~~g~l~isev~~~~~~~~~~~~l~~GD~V~arVi~v~~ 118 (229)
T 2ba0_A 60 VVIGIIREVA---ANGWAVDIYSPYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLNIDP 118 (229)
T ss_dssp EEEEEEEEEC---SSEEEEECSSSSCEEEEGGGCTTCCTTSCGGGTCCTTCEEEEEEEEECT
T ss_pred EEEEEEEEEe---CCeEEEEeCCCeEEEEEHHHccccccccchhcccCCCCEEEEEEEEECC
Confidence 3457777663 345555555467899999999832 111123578999999999876543
No 120
>1j6q_A Cytochrome C maturation protein E; all-beta protein, heme delivery,cytochrome C maturation, OB- (oligonucleotide binding)fold; NMR {Shewanella putrefaciens} SCOP: b.40.9.1 PDB: 1lm0_A
Probab=25.71 E-value=1.9e+02 Score=20.77 Aligned_cols=62 Identities=13% Similarity=0.100 Sum_probs=45.8
Q ss_pred eeEEEeecCCCceeEEeCCCCCcEEEeccchhccCcccccccCCCCCEEEEEEEEcCCC-ceeEEeecCC
Q psy9900 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD-IEAINVTGPN 180 (191)
Q Consensus 112 G~Vk~~~~~kgfGFI~~~d~~~dvF~h~s~~~~~~~~~~~~~l~~G~~V~f~i~~~~kg-~~A~~V~~~~ 180 (191)
|.|.+-.....+=|...|+.+..|-|.++-+.- ...++|+-|...=.-.+.| ..|.+|-.-+
T Consensus 44 GSv~r~~~~~~v~F~vtD~~~~~v~V~Y~GilP-------DlFrEGqgVVa~G~l~~~g~F~A~eVLaKh 106 (136)
T 1j6q_A 44 GSMVRDPNSLHVQFAVHDSLGGEILVTYDDLLP-------DLFREGQGIVAQGVLGEDGKLAATEVLAKH 106 (136)
T ss_dssp TCCEECTTSSCEEEEEECTTCCCEEEEECSCCT-------TSCCSSSEEEEEEEECSTTSEEEEEEECCC
T ss_pred CcEEecCCCCEEEEEEEcCCCCEEEEEECCCCC-------ccccCCCeEEEEEEECCCCeEEEEEEEecC
Confidence 445443334558888888567889999998875 3678999998877777667 8999987655
No 121
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=25.70 E-value=1.9e+02 Score=22.42 Aligned_cols=58 Identities=9% Similarity=0.127 Sum_probs=38.0
Q ss_pred ccceEEEEeeCCCCeeEEEeCCCCccEEEEeeeheecC----CCCCcccCCCCCEEEEEEEEcCC
Q psy9900 8 TVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMN----PKKFFQSLGLGEIVDFNIGVGKK 68 (191)
Q Consensus 8 ~~~G~vk~~~~~kGfGFI~~~~~~~dvFvh~s~l~~~~----~~~g~~~l~~Gd~V~f~~~~~~~ 68 (191)
...|+|..-. .+|+...-+..-+-++|.+++.... ..+-...|++||.|..++..-..
T Consensus 69 iV~G~V~~v~---~~~~~V~I~~~~~g~l~isei~~~~~~~~~~~~~~~l~~GD~V~a~Vi~v~~ 130 (235)
T 2z0s_A 69 VVIGLIQSVG---IMNWFVDINSPYVAVLSVQDFLGRPFNPAVDDMQSLLKVGDYIKAKVVAFDK 130 (235)
T ss_dssp CEEEEEEEEC---SSEEEEECSSSSCEEEEHHHHHTSCCCTTTTCCTTSSCTTCEEEEEEEEECT
T ss_pred EEEEEEEEEe---CCeEEEEeCCCeEEEEEHHHhCCCccccchhhHhhcCCCCCEEEEEEEEECC
Confidence 4567887763 3455554444678999999997410 00112378999999999876544
No 122
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.32 E-value=39 Score=21.81 Aligned_cols=19 Identities=21% Similarity=0.382 Sum_probs=15.8
Q ss_pred eEEEEeeCCCCeeEEEeCC
Q psy9900 11 GIVKFYDSKRGFGFITRLD 29 (191)
Q Consensus 11 G~vk~~~~~kGfGFI~~~~ 29 (191)
|.|......|||+||.-.+
T Consensus 42 g~v~~~~~~~g~afV~f~~ 60 (99)
T 2cpd_A 42 GAVERVKKIRDYAFVHFSN 60 (99)
T ss_dssp TCEEEEEECSSEEEEEESS
T ss_pred cceEEEEEeCCeEEEEeCC
Confidence 7788888889999998765
No 123
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=23.88 E-value=17 Score=33.73 Aligned_cols=58 Identities=22% Similarity=0.143 Sum_probs=0.0
Q ss_pred eccceEEEEeeCCCCeeEEEeCCCCccEEEEeeeheecCCCCCcccCCCCCEEEEEEEEcC
Q psy9900 7 HTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGK 67 (191)
Q Consensus 7 ~~~~G~vk~~~~~kGfGFI~~~~~~~dvFvh~s~l~~~~~~~g~~~l~~Gd~V~f~~~~~~ 67 (191)
....|+|+.. .-||....-..+.+-++|+|.+....-.+--..++.||.|.+++..-+
T Consensus 639 ~v~~G~V~~I---~~fGaFVel~~g~eGLvHiSels~~rv~~~~d~~kvGD~V~VkVi~iD 696 (726)
T 4aid_A 639 KIYDGKVVKV---VDFGAFVNFFGAKDGLVHVSQISNERVAKPSDVLKEGQMVKVKLLGFD 696 (726)
T ss_dssp -------------------------------------------------------------
T ss_pred cEEEEEEEEE---eccEEEEEECCCcEEEEEHHHcCcccccCccccCCCCCEEEEEEEEEC
Confidence 4467888776 468866655557899999999975321111235789999999887543
No 124
>3ayh_B DNA-directed RNA polymerase III subunit RPC8; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=23.55 E-value=1.6e+02 Score=22.20 Aligned_cols=60 Identities=13% Similarity=0.053 Sum_probs=34.9
Q ss_pred ceeceeccceEEEEeeCCCCeeEEEeCCCCccEEEEeeeheecCC-------------------CCCcccCCCCCEEEEE
Q psy9900 2 TKFEIHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNP-------------------KKFFQSLGLGEIVDFN 62 (191)
Q Consensus 2 ~~~~~~~~~G~vk~~~~~kGfGFI~~~~~~~dvFvh~s~l~~~~~-------------------~~g~~~l~~Gd~V~f~ 62 (191)
+....+...|+|+.-+ .||+-..-+ .-+=.||.+++....- ...-..++.||.|.|.
T Consensus 78 ~p~~GEv~~G~Vs~vt---~~GifV~lg-~~eglv~~~~l~~d~~~fd~~~~~~v~~~~~~~~~~~~~~~~~~Gd~Vrvr 153 (203)
T 3ayh_B 78 RPFRGEVMLGKIKSCS---EEGIRVTIS-FFDDIFIPKDMLFDPCVFRPDERAWVWKIEGEDGSEGTELYFDIDEEIRFQ 153 (203)
T ss_dssp CCCTTCEEEEEEEEEE---TTEEEEECS-SCCCEEEEGGGBCTTEEEEGGGTEEEEEECCCTTSCCEEEECCTTCEEEEE
T ss_pred ccCCCCEEEEEEEEEe---ccEEEEEEe-CceEEEEcHHhCCCCceECccCceEEeecccccccccCCcEEcCCCEEEEE
Confidence 4445566778888876 457666554 3233456666643210 0012357889999998
Q ss_pred EEE
Q psy9900 63 IGV 65 (191)
Q Consensus 63 ~~~ 65 (191)
+..
T Consensus 154 V~~ 156 (203)
T 3ayh_B 154 IES 156 (203)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
No 125
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=23.44 E-value=1.7e+02 Score=21.81 Aligned_cols=57 Identities=18% Similarity=0.177 Sum_probs=40.2
Q ss_pred ccceEEEEeeCCCCeeEEEeCCC-CccEEEEeeeheecCCCCCcccCCCCCEEEEEEEEcCC
Q psy9900 8 TVRGIVKFYDSKRGFGFITRLDN-KEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68 (191)
Q Consensus 8 ~~~G~vk~~~~~kGfGFI~~~~~-~~dvFvh~s~l~~~~~~~g~~~l~~Gd~V~f~~~~~~~ 68 (191)
...|+|..= .++++...-.. ..+-++|.+++..+ ..+-...|.+||.|..++..-..
T Consensus 10 vViG~V~~v---~~~~~~VdI~~~~~~a~L~~s~~~g~-~k~~r~~l~~GDlV~ArV~~~~~ 67 (175)
T 2ja9_A 10 FVIGVIIGT---FSDSYKVSLQNFSSSVSLSYMAFPNA-SKKNRPTLQVGDLVYARVCTAEK 67 (175)
T ss_dssp EEEEEEEEE---CSSEEEEESSTTSCCEEEETTSSTTC-CSSSCCCCCTTCEEEEEEEECCT
T ss_pred EEEEEEEEE---ECcEEEEEECCCCccEEEEHHHCCch-hhhhhccCCCCCEEEEEEEEecC
Confidence 345777654 45667666665 68899999999843 23345779999999988875443
No 126
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=23.00 E-value=17 Score=33.86 Aligned_cols=61 Identities=23% Similarity=0.218 Sum_probs=28.5
Q ss_pred ceeeeeeEEEeecCCCceeEEeCCCCCcEEEeccch----hccCcccccccCCCCCEEEEEEEEcC-CC
Q psy9900 107 VHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSI----VKMNPKKFFQSLGLGEIVDFNIGVGK-KD 170 (191)
Q Consensus 107 ~~~~~G~Vk~~~~~kgfGFI~~~d~~~dvF~h~s~~----~~~~~~~~~~~l~~G~~V~f~i~~~~-kg 170 (191)
...+.|+|+.. ..||....-..+.+-++|+|.+ ....-..--..++.||.|.+.|..-+ +|
T Consensus 668 G~i~~G~V~~i---~~fGaFV~l~~g~eGLvHiSel~~~~s~~rv~~~~~~~~vGd~V~VkVi~vd~~g 733 (757)
T 1e3p_A 668 GERILGSVVKT---TTFGAFVSLLPGKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDSRG 733 (757)
T ss_dssp -----CBEEEC---C-CSCEECCC---CCCCC-------------------CCSSCBCCCCCCCCCSSC
T ss_pred ccEEEEEEEEc---cccEEEEEEcCCcEEEEEhHHhccccCCCcccCcccccCCCCEEEEEEEEECCCC
Confidence 35578888775 4588544444478999999999 42100011246899999999987755 45
No 127
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=22.65 E-value=59 Score=21.66 Aligned_cols=19 Identities=11% Similarity=0.174 Sum_probs=13.2
Q ss_pred eEEEEe--eCCCCeeEEEeCC
Q psy9900 11 GIVKFY--DSKRGFGFITRLD 29 (191)
Q Consensus 11 G~vk~~--~~~kGfGFI~~~~ 29 (191)
|.|+.+ ...||||||+..+
T Consensus 32 G~V~~~~l~~~kGfaFVey~~ 52 (89)
T 2wbr_A 32 GPLVSFHPYLNQGIALCKYTT 52 (89)
T ss_dssp SCEEEEEEETTTTEEEEEESS
T ss_pred CCEEEEEEcCCCcEEEEEECC
Confidence 445544 3469999999765
No 128
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=21.05 E-value=2.6e+02 Score=20.72 Aligned_cols=58 Identities=17% Similarity=0.179 Sum_probs=43.2
Q ss_pred eeeeeeEEEeecCCCceeEEeCCC-CCcEEEeccchhccCcccccccCCCCCEEEEEEEEcCC
Q psy9900 108 HTVRGIVKFYDSKRGFGFITRLDN-KEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169 (191)
Q Consensus 108 ~~~~G~Vk~~~~~kgfGFI~~~d~-~~dvF~h~s~~~~~~~~~~~~~l~~G~~V~f~i~~~~k 169 (191)
+..-|+|..- .+.++...-.. ..+.++|.+++.+.. +.-...|++||-|.-++..-.+
T Consensus 9 DvViG~V~~v---~~~~~~VdI~~~~~~a~L~~s~~~g~~-k~~r~~l~~GDlV~ArV~~~~~ 67 (175)
T 2ja9_A 9 DFVIGVIIGT---FSDSYKVSLQNFSSSVSLSYMAFPNAS-KKNRPTLQVGDLVYARVCTAEK 67 (175)
T ss_dssp CEEEEEEEEE---CSSEEEEESSTTSCCEEEETTSSTTCC-SSSCCCCCTTCEEEEEEEECCT
T ss_pred CEEEEEEEEE---ECcEEEEEECCCCccEEEEHHHCCchh-hhhhccCCCCCEEEEEEEEecC
Confidence 4566777654 55777777776 689999999998442 2345679999999999987654
No 129
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.98 E-value=1.4e+02 Score=18.58 Aligned_cols=36 Identities=19% Similarity=0.120 Sum_probs=29.7
Q ss_pred eeeeeEEEeecCCCceeEEeCCCCCcEEEeccchhcc
Q psy9900 109 TVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKM 145 (191)
Q Consensus 109 ~~~G~Vk~~~~~kgfGFI~~~d~~~dvF~h~s~~~~~ 145 (191)
-+.|+|+..+..+..=||.-.| +...+++..++...
T Consensus 23 fYlgtV~kV~~~~~~ClV~FeD-~s~~wv~~kdi~~~ 58 (63)
T 2e5q_A 23 YYLGKIKRVSSSKQSCLVTFED-NSKYWVLWKDIQHA 58 (63)
T ss_dssp EEEEEECCCCSTTSEEEEEETT-SCEEEEEGGGEECC
T ss_pred EEEEEEEEEecCCCEEEEEEcc-CceeEEEeeccccc
Confidence 5778888888888888888887 67899999999864
No 130
>3tuf_B Stage II sporulation protein Q; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_B
Probab=20.88 E-value=92 Score=24.63 Aligned_cols=48 Identities=8% Similarity=0.253 Sum_probs=28.7
Q ss_pred ccceEEEEeeCCCCeeEEEeCCCC---ccEEEEeeeheecCCCCCcccCCCCCEE
Q psy9900 8 TVRGIVKFYDSKRGFGFITRLDNK---EDIFVHKSSIVKMNPKKFFQSLGLGEIV 59 (191)
Q Consensus 8 ~~~G~vk~~~~~kGfGFI~~~~~~---~dvFvh~s~l~~~~~~~g~~~l~~Gd~V 59 (191)
...|+|.......+||....-+.+ .-+|-|.+.+.... | ..+..|+.|
T Consensus 99 ~~~G~V~~~g~~~~~G~~ViI~Hg~G~~t~Y~HL~~i~Vk~---G-d~V~~Gq~I 149 (245)
T 3tuf_B 99 SLSGTVVKAEKDPVLGYVVEVEHADGLSTVYQSLSEVSVEQ---G-DKVKQNQVI 149 (245)
T ss_dssp SSCEEEEEEEEETTTEEEEEEECSTTEEEEEEEESEESCCT---T-CEECTTCEE
T ss_pred CcCeEEEEEEecCCCceEEEEEeCCCEEEEEecCCccccCC---C-CEECCCCEE
Confidence 467999988877888864432222 35788887654331 1 345555543
No 131
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=20.77 E-value=12 Score=34.72 Aligned_cols=58 Identities=24% Similarity=0.203 Sum_probs=26.0
Q ss_pred eeccceEEEEeeCCCCeeEEEeCCCCccEEEEeeeh----eecCCCCCcccCCCCCEEEEEEEEc
Q psy9900 6 IHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSI----VKMNPKKFFQSLGLGEIVDFNIGVG 66 (191)
Q Consensus 6 ~~~~~G~vk~~~~~kGfGFI~~~~~~~dvFvh~s~l----~~~~~~~g~~~l~~Gd~V~f~~~~~ 66 (191)
.....|+|+.. .-||....-..+.+-|+|+|.+ ....-.+....++.||.|.+++..-
T Consensus 668 G~i~~G~V~~i---~~fGaFV~l~~g~eGLvHiSel~~~~s~~rv~~~~~~~~vGd~V~VkVi~v 729 (757)
T 1e3p_A 668 GERILGSVVKT---TTFGAFVSLLPGKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEI 729 (757)
T ss_dssp -----CBEEEC---C-CSCEECCC---CCCCC-------------------CCSSCBCCCCCCCC
T ss_pred ccEEEEEEEEc---cccEEEEEEcCCcEEEEEhHHhccccCCCcccCcccccCCCCEEEEEEEEE
Confidence 35567888876 5688444444468999999999 4321111124678999999887653
No 132
>2ylb_A Protein HFQ; RNA-binding protein, LSM protein, RNA chaperone; 1.15A {Salmonella enterica subsp} PDB: 2yht_A 1hk9_A 2ylc_A* 3gib_A* 3rer_A* 3qo3_A* 3res_A*
Probab=20.32 E-value=42 Score=21.64 Aligned_cols=33 Identities=18% Similarity=0.259 Sum_probs=22.4
Q ss_pred eeccceEEEEeeCCCCeeEEEeCCCCccEEEEeeehee
Q psy9900 6 IHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVK 43 (191)
Q Consensus 6 ~~~~~G~vk~~~~~kGfGFI~~~~~~~dvFvh~s~l~~ 43 (191)
..+.+|+|+|||. |=.+..++ ...++...++..
T Consensus 31 G~~l~G~I~~fD~---f~vlL~~~--~~~LIYKhAIsT 63 (74)
T 2ylb_A 31 GIKLQGQIESFDQ---FVILLKNT--VSQMVYKHAIST 63 (74)
T ss_dssp SCEEEEEEEEECS---SEEEEESS--SEEEEEGGGEEE
T ss_pred CCEEEEEEEEECC---cEEEEECC--ceEEEEeeeEEE
Confidence 3568899999984 44444433 677887777754
No 133
>3h43_A Proteasome-activating nucleotidase; regulatory particle, nucleosidase, ATP-binding, cytoplasm, nucleotide-binding, hydrolase; 2.10A {Methanocaldococcus jannaschii}
Probab=20.05 E-value=1.3e+02 Score=19.61 Aligned_cols=45 Identities=18% Similarity=0.166 Sum_probs=29.8
Q ss_pred eeeeEEEeecCCCceeEEeCCCCCcEEEeccchhccCcccccccCCCCCEEEE
Q psy9900 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDF 162 (191)
Q Consensus 110 ~~G~Vk~~~~~kgfGFI~~~d~~~dvF~h~s~~~~~~~~~~~~~l~~G~~V~f 162 (191)
.-|+|-...++ +. +|.....+..+|+..+..... ..|++|++|..
T Consensus 20 ~vG~v~e~~dd-~~-~iVkss~g~~~~V~v~~~Vd~------~~LkpG~rVaL 64 (85)
T 3h43_A 20 IVGTVVDKVGE-RK-VVVKSSTGPSFLVNVSHFVNP------DDLAPGKRVCL 64 (85)
T ss_dssp EEEEEEEEEET-TE-EEEEETTSSEEEEEBCTTSCG------GGCCTTCEEEE
T ss_pred eEEEEEEEcCC-CE-EEEEeCCCCeEEEEecCccCH------HHCCCCCEEEE
Confidence 44555444322 23 444444578999999998764 69999999864
Done!