Your job contains 1 sequence.
>psy9900
MTKFEIHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVD
FNIGVGKKDIEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSK
RGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPN
GIPVQGAPKVP
The BLAST search returned 10 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy9900
(191 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|F1PB10 - symbol:CSDA "Uncharacterized protein" ... 228 5.8e-22 2
UNIPROTKB|A5D7M4 - symbol:YBX2 "Uncharacterized protein" ... 241 2.1e-20 1
UNIPROTKB|I3LCJ2 - symbol:YBX2 "Uncharacterized protein" ... 237 6.5e-20 1
UNIPROTKB|P21574 - symbol:ybx2-a "Y-box-binding protein 2... 236 7.2e-20 1
UNIPROTKB|F1SFU0 - symbol:LOC100736899 "Uncharacterized p... 237 7.3e-20 1
UNIPROTKB|E2RMN5 - symbol:YBX2 "Uncharacterized protein" ... 237 7.7e-20 1
UNIPROTKB|Q9Y2T7 - symbol:YBX2 "Y-box-binding protein 2" ... 236 9.5e-20 1
UNIPROTKB|P45441 - symbol:ybx2-b "Y-box-binding protein 2... 234 1.2e-19 1
UNIPROTKB|F1M1Q9 - symbol:F1M1Q9 "Uncharacterized protein... 233 1.5e-19 1
UNIPROTKB|D4A0L4 - symbol:Csda "DNA-binding protein A" sp... 233 1.5e-19 1
UNIPROTKB|D4AAT9 - symbol:Csda "DNA-binding protein A" sp... 233 1.5e-19 1
UNIPROTKB|F1LTA0 - symbol:F1LTA0 "Uncharacterized protein... 233 1.5e-19 1
MGI|MGI:2137670 - symbol:Ybx3 "Y box protein 3" species:1... 234 1.5e-19 1
RGD|621056 - symbol:Ybx3 "Y box binding protein 3" specie... 233 2.0e-19 1
UNIPROTKB|F1MA18 - symbol:Csda "DNA-binding protein A" sp... 233 2.0e-19 1
UNIPROTKB|A5D7Q4 - symbol:CSDA "Uncharacterized protein" ... 234 2.1e-19 1
RGD|1305068 - symbol:Ybx2 "Y box binding protein 2" speci... 232 2.5e-19 1
UNIPROTKB|F1SQ46 - symbol:CSDA "Uncharacterized protein" ... 230 3.1e-19 1
UNIPROTKB|F1NFC0 - symbol:YBX1 "Nuclease-sensitive elemen... 229 4.0e-19 1
UNIPROTKB|F1NKY2 - symbol:YBX1 "Nuclease-sensitive elemen... 229 4.0e-19 1
UNIPROTKB|Q06066 - symbol:YBX1 "Nuclease-sensitive elemen... 229 4.0e-19 1
UNIPROTKB|F1MZ92 - symbol:YBX1 "Nuclease-sensitive elemen... 229 4.0e-19 1
UNIPROTKB|P67808 - symbol:YBX1 "Nuclease-sensitive elemen... 229 4.0e-19 1
UNIPROTKB|P67809 - symbol:YBX1 "Nuclease-sensitive elemen... 229 4.0e-19 1
UNIPROTKB|P21573 - symbol:ybx1 "Nuclease-sensitive elemen... 229 4.0e-19 1
UNIPROTKB|Q28618 - symbol:YBX1 "Nuclease-sensitive elemen... 229 4.0e-19 1
MGI|MGI:99146 - symbol:Ybx1 "Y box protein 1" species:100... 229 4.0e-19 1
RGD|61843 - symbol:Ybx1 "Y box binding protein 1" species... 229 4.0e-19 1
RGD|6486912 - symbol:LOC100912427 "nuclease-sensitive ele... 229 4.0e-19 1
ZFIN|ZDB-GENE-000629-3 - symbol:ybx1 "Y box binding prote... 229 4.0e-19 1
UNIPROTKB|E2R1A0 - symbol:YBX1 "Uncharacterized protein" ... 229 5.7e-19 1
UNIPROTKB|I3LQF8 - symbol:CSDA "Uncharacterized protein" ... 230 6.4e-19 1
UNIPROTKB|F1NQ33 - symbol:F1NQ33 "Uncharacterized protein... 227 6.5e-19 1
UNIPROTKB|J9NTE1 - symbol:CSDA "Uncharacterized protein" ... 227 6.5e-19 1
UNIPROTKB|J9NV99 - symbol:CSDA "Uncharacterized protein" ... 227 6.5e-19 1
UNIPROTKB|F1LXN5 - symbol:Csda "DNA-binding protein A" sp... 227 6.5e-19 1
UNIPROTKB|P16989 - symbol:CSDA "DNA-binding protein A" sp... 229 7.3e-19 1
UNIPROTKB|E9PTV8 - symbol:E9PTV8 "Uncharacterized protein... 226 8.3e-19 1
UNIPROTKB|F1LY12 - symbol:F1LY12 "Uncharacterized protein... 226 8.3e-19 1
MGI|MGI:1096372 - symbol:Ybx2 "Y box protein 2" species:1... 226 1.3e-18 1
UNIPROTKB|J9NTJ7 - symbol:LOC474472 "Uncharacterized prot... 224 1.4e-18 1
UNIPROTKB|F1M0E9 - symbol:F1M0E9 "Uncharacterized protein... 221 2.8e-18 1
UNIPROTKB|E1C9B8 - symbol:E1C9B8 "Uncharacterized protein... 220 3.6e-18 1
UNIPROTKB|F1PF53 - symbol:F1PF53 "Uncharacterized protein... 219 4.6e-18 1
UNIPROTKB|F1PF55 - symbol:F1PF55 "Uncharacterized protein... 219 4.6e-18 1
UNIPROTKB|J9NYZ2 - symbol:J9NYZ2 "Uncharacterized protein... 219 4.6e-18 1
UNIPROTKB|J9P9A0 - symbol:J9P9A0 "Uncharacterized protein... 219 4.6e-18 1
UNIPROTKB|F1RWB7 - symbol:F1RWB7 "Uncharacterized protein... 219 4.6e-18 1
FB|FBgn0022959 - symbol:yps "ypsilon schachtel" species:7... 220 6.5e-18 1
WB|WBGene00000472 - symbol:cey-1 species:6239 "Caenorhabd... 215 1.2e-17 1
UNIPROTKB|F1NMZ8 - symbol:YBX1 "Nuclease-sensitive elemen... 210 4.1e-17 1
UNIPROTKB|F1S319 - symbol:F1S319 "Uncharacterized protein... 187 1.1e-14 1
UNIPROTKB|F1NA94 - symbol:F1NA94 "Uncharacterized protein... 181 4.9e-14 1
UNIPROTKB|I3LFV4 - symbol:YBX1 "Uncharacterized protein" ... 182 8.8e-14 1
UNIPROTKB|J9PBG2 - symbol:J9PBG2 "Uncharacterized protein... 178 1.0e-13 1
UNIPROTKB|F1PZ69 - symbol:F1PZ69 "Uncharacterized protein... 179 1.5e-13 1
UNIPROTKB|G3N0T3 - symbol:G3N0T3 "Uncharacterized protein... 176 1.6e-13 1
UNIPROTKB|H0Y449 - symbol:YBX1 "Nuclease-sensitive elemen... 181 1.9e-13 1
UNIPROTKB|G3X6E4 - symbol:G3X6E4 "Uncharacterized protein... 174 2.7e-13 1
RGD|2324048 - symbol:LOC100366210 "Y box binding protein ... 170 1.3e-12 1
UNIPROTKB|F1M1T6 - symbol:F1M1T6 "Uncharacterized protein... 168 2.8e-12 1
WB|WBGene00000473 - symbol:cey-2 species:6239 "Caenorhabd... 165 3.1e-12 1
UNIPROTKB|F1RZ18 - symbol:F1RZ18 "Uncharacterized protein... 165 5.7e-12 1
TAIR|locus:2047092 - symbol:GRP2B "glycine-rich protein 2... 159 1.0e-11 1
TAIR|locus:2121219 - symbol:GRP2 "AT4G38680" species:3702... 158 1.3e-11 1
WB|WBGene00000474 - symbol:cey-3 species:6239 "Caenorhabd... 158 2.0e-11 1
UNIPROTKB|F1M2W5 - symbol:F1M2W5 "Uncharacterized protein... 157 5.9e-11 1
UNIPROTKB|F1SN83 - symbol:F1SN83 "Uncharacterized protein... 155 7.3e-11 1
UNIPROTKB|I3LAD3 - symbol:I3LAD3 "Uncharacterized protein... 155 8.6e-11 1
UNIPROTKB|G3N2S9 - symbol:G3N2S9 "Uncharacterized protein... 148 1.5e-10 1
UNIPROTKB|F1LUS5 - symbol:F1LUS5 "Uncharacterized protein... 143 5.2e-10 1
UNIPROTKB|Q5EB47 - symbol:lin28a "Protein lin-28 homolog ... 138 1.8e-09 1
UNIPROTKB|F1M549 - symbol:F1M549 "Uncharacterized protein... 142 2.2e-09 1
WB|WBGene00000475 - symbol:cey-4 species:6239 "Caenorhabd... 140 3.4e-09 1
ZFIN|ZDB-GENE-040426-747 - symbol:lin28a "lin-28 homolog ... 136 8.7e-09 1
UNIPROTKB|P0A9Y6 - symbol:cspC species:83333 "Escherichia... 128 2.0e-08 1
UNIPROTKB|Q8JHC4 - symbol:lin28a "Protein lin-28 homolog ... 133 2.5e-08 1
TIGR_CMR|GSU_0207 - symbol:GSU_0207 "cold-shock domain fa... 122 8.7e-08 1
TIGR_CMR|GSU_1905 - symbol:GSU_1905 "cold shock domain fa... 120 1.4e-07 1
UNIPROTKB|P0A972 - symbol:cspE species:83333 "Escherichia... 118 2.3e-07 1
TIGR_CMR|CPS_0718 - symbol:CPS_0718 "cold-shock DNA-bindi... 118 2.3e-07 1
UNIPROTKB|P36995 - symbol:cspB species:83333 "Escherichia... 117 2.9e-07 1
UNIPROTKB|P0A9X9 - symbol:cspA species:83333 "Escherichia... 117 2.9e-07 1
UNIPROTKB|F1M451 - symbol:F1M451 "Uncharacterized protein... 117 2.9e-07 1
UNIPROTKB|Q45KJ5 - symbol:LIN28A "Protein lin-28 homolog ... 127 4.0e-07 1
TIGR_CMR|GSU_0581 - symbol:GSU_0581 "cold-shock domain fa... 115 5.0e-07 1
TAIR|locus:2827810 - symbol:CSP3 "cold shock domain prote... 130 6.4e-07 1
UNIPROTKB|Q9KN00 - symbol:cspA "Cold shock-like protein C... 114 6.6e-07 1
TIGR_CMR|GSU_0191 - symbol:GSU_0191 "cold-shock domain fa... 114 6.6e-07 1
TIGR_CMR|VC_A0166 - symbol:VC_A0166 "cold shock transcrip... 114 6.6e-07 1
UNIPROTKB|F1NS05 - symbol:LIN28A "Protein lin-28 homolog ... 125 8.4e-07 1
TIGR_CMR|CPS_0737 - symbol:CPS_0737 "cold-shock DNA-bindi... 113 8.7e-07 1
TIGR_CMR|CHY_0155 - symbol:CHY_0155 "cold shock protein C... 112 1.2e-06 1
UNIPROTKB|P0A986 - symbol:cspI species:83333 "Escherichia... 110 2.0e-06 1
UNIPROTKB|P0A978 - symbol:cspG species:83333 "Escherichia... 109 2.7e-06 1
UNIPROTKB|C9J5V9 - symbol:YBX1 "Nuclease-sensitive elemen... 93 2.8e-06 2
TIGR_CMR|SPO_2140 - symbol:SPO_2140 "cold shock DNA-bindi... 118 3.2e-06 1
UNIPROTKB|E1BHM3 - symbol:LIN28A "Uncharacterized protein... 121 3.5e-06 1
UNIPROTKB|B1PXG0 - symbol:LIN28 "LIN28" species:9823 "Sus... 121 3.5e-06 1
UNIPROTKB|E2RD12 - symbol:LIN28A "Uncharacterized protein... 121 3.6e-06 1
WARNING: Descriptions of 34 database sequences were not reported due to the
limiting value of parameter V = 100.
>UNIPROTKB|F1PB10 [details] [associations]
symbol:CSDA "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 OMA:ENQQATS GeneTree:ENSGT00390000009256
EMBL:AAEX03015257 EMBL:AAEX03015256 Ensembl:ENSCAFT00000021267
Uniprot:F1PB10
Length = 370
Score = 228 (85.3 bits), Expect = 5.8e-22, Sum P(2) = 5.8e-22
Identities = 42/83 (50%), Positives = 63/83 (75%)
Query: 105 PAVHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 164
PA V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++
Sbjct: 87 PATK-VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDV 145
Query: 165 GVGKKDIEAINVTGPNGIPVQGA 187
G+K EA NVTGP+G+PV+G+
Sbjct: 146 VEGEKGAEAANVTGPDGVPVEGS 168
Score = 227 (85.0 bits), Expect = 1.2e-18, P = 1.2e-18
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 91 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 150
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G+PV+G+
Sbjct: 151 GAEAANVTGPDGVPVEGS 168
Score = 47 (21.6 bits), Expect = 5.8e-22, Sum P(2) = 5.8e-22
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 78 PNGIPVQG-APKSSSETVSGTYRNDSFFPA 106
P G P+QG +P+++S RN PA
Sbjct: 2 PKGAPLQGLSPQTASGVTQAPRRNPPARPA 31
>UNIPROTKB|A5D7M4 [details] [associations]
symbol:YBX2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051100 "negative regulation of binding" evidence=IEA]
[GO:0048477 "oogenesis" evidence=IEA] [GO:0048255 "mRNA
stabilization" evidence=IEA] [GO:0045182 "translation regulator
activity" evidence=IEA] [GO:0043021 "ribonucleoprotein complex
binding" evidence=IEA] [GO:0017148 "negative regulation of
translation" evidence=IEA] [GO:0008289 "lipid binding"
evidence=IEA] [GO:0007286 "spermatid development" evidence=IEA]
[GO:0005844 "polysome" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR002059
InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 GO:GO:0005737 GO:GO:0006355 GO:GO:0007286
GO:GO:0017148 GO:GO:0003677 GO:GO:0048477 GO:GO:0003682
GO:GO:0045182 GO:GO:0048255 GO:GO:0008289 GO:GO:0003730
GO:GO:0005844 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0043021 InterPro:IPR019844 GO:GO:0051100 eggNOG:COG1278
HOGENOM:HOG000116439 OrthoDB:EOG46DM3W GeneTree:ENSGT00390000009256
CTD:51087 HOVERGEN:HBG079361 KO:K09277 OMA:MEGTDGV
EMBL:DAAA02048764 EMBL:BC140614 IPI:IPI00705175
RefSeq:NP_001091595.1 UniGene:Bt.62380 SMR:A5D7M4 STRING:A5D7M4
Ensembl:ENSBTAT00000012026 GeneID:614429 KEGG:bta:614429
InParanoid:A5D7M4 NextBio:20899107 Uniprot:A5D7M4
Length = 360
Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
Identities = 52/130 (40%), Positives = 79/130 (60%)
Query: 64 GVGKKDIEAINVTGPNGIPVQGAPKSS-SETVSGTYRNDSFFPAVHT-VRGIVKFYDSKR 121
GVG A+ G G P ++ S T + R+ + P + V G VK+++ +
Sbjct: 48 GVGTASGPAVGTPSAPGPRTPGNPATAASGTPAPLARSQADKPVLAIQVLGTVKWFNVRN 107
Query: 122 GFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNG 181
G+GFI R D KED+FVH+++I + NP+KF +S+G GE V+F++ G+K EA NVTGP G
Sbjct: 108 GYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEAANVTGPGG 167
Query: 182 IPVQGAPKVP 191
+PV+G+ P
Sbjct: 168 VPVKGSRYAP 177
Score = 225 (84.3 bits), Expect = 1.7e-18, P = 1.7e-18
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +S+G GE V+F++ G+K
Sbjct: 96 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEK 155
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PV+G+
Sbjct: 156 GAEAANVTGPGGVPVKGS 173
>UNIPROTKB|I3LCJ2 [details] [associations]
symbol:YBX2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0005737 GO:GO:0006355
GO:GO:0007286 GO:GO:0017148 GO:GO:0003677 GO:GO:0048477
GO:GO:0003682 GO:GO:0045182 GO:GO:0048255 GO:GO:0008289
GO:GO:0003730 GO:GO:0005844 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0043021 InterPro:IPR019844 GO:GO:0051100
GeneTree:ENSGT00390000009256 KO:K09277 OMA:MEGTDGV EMBL:FP565181
RefSeq:XP_003131986.2 Ensembl:ENSSSCT00000022529 GeneID:100519387
KEGG:ssc:100519387 Uniprot:I3LCJ2
Length = 360
Score = 237 (88.5 bits), Expect = 6.5e-20, P = 6.5e-20
Identities = 52/130 (40%), Positives = 78/130 (60%)
Query: 64 GVGKKDIEAINVTGPNGIPVQGAPKSS-SETVSGTYRNDSFFPAVHT-VRGIVKFYDSKR 121
GVG A G G P ++ S T + R+ + P + V G VK+++ +
Sbjct: 48 GVGAASGPAAGTPSAPGPRTPGNPATAASGTSAPPARSQADKPVLAIQVLGTVKWFNVRN 107
Query: 122 GFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNG 181
G+GFI R D KED+FVH+++I + NP+KF +S+G GE V+F++ G+K EA NVTGP G
Sbjct: 108 GYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEAANVTGPGG 167
Query: 182 IPVQGAPKVP 191
+PV+G+ P
Sbjct: 168 VPVKGSRYAP 177
Score = 225 (84.3 bits), Expect = 1.7e-18, P = 1.7e-18
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +S+G GE V+F++ G+K
Sbjct: 96 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEK 155
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PV+G+
Sbjct: 156 GAEAANVTGPGGVPVKGS 173
>UNIPROTKB|P21574 [details] [associations]
symbol:ybx2-a "Y-box-binding protein 2-A" species:8355
"Xenopus laevis" [GO:0003723 "RNA binding" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IPI] [GO:0043565
"sequence-specific DNA binding" evidence=IDA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IDA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0005737 GO:GO:0045893
GO:GO:0043565 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 HOVERGEN:HBG079361 EMBL:M59454 EMBL:BC155914
EMBL:BC169704 EMBL:BC169706 PIR:B38274 RefSeq:NP_001081274.1
UniGene:Xl.787 ProteinModelPortal:P21574 PRIDE:P21574 GeneID:397746
KEGG:xla:397746 CTD:397746 Xenbase:XB-GENE-6252609 Uniprot:P21574
Length = 336
Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
Identities = 48/116 (41%), Positives = 75/116 (64%)
Query: 78 PNGIPV-QGAPKSSSETVSGTYRNDSFFPAVHT-VRGIVKFYDSKRGFGFITRLDNKEDI 135
P +P + P+ ++ RN + + T V+G VK+++ + G+GFI R D KED+
Sbjct: 9 PEPVPQPESEPEIQKPGIAAA-RNQANKKVLATQVQGTVKWFNVRNGYGFINRNDTKEDV 67
Query: 136 FVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGAPKVP 191
FVH+++I K NP+KF +S+G GE V+F++ G+K EA NVTGP G+PV+G+ P
Sbjct: 68 FVHQTAIKKNNPRKFLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVKGSRFAP 123
Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
Identities = 41/78 (52%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V+G VK+++ + G+GFI R D KED+FVH+++I K NP+KF +S+G GE V+F++ G+K
Sbjct: 42 VQGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGETVEFDVVEGEK 101
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PV+G+
Sbjct: 102 GAEAANVTGPGGVPVKGS 119
>UNIPROTKB|F1SFU0 [details] [associations]
symbol:LOC100736899 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 GeneTree:ENSGT00390000009256 EMBL:CU681851
Ensembl:ENSSSCT00000019522 OMA:XKERAPL Uniprot:F1SFU0
Length = 365
Score = 237 (88.5 bits), Expect = 7.3e-20, P = 7.3e-20
Identities = 52/130 (40%), Positives = 78/130 (60%)
Query: 64 GVGKKDIEAINVTGPNGIPVQGAPKSS-SETVSGTYRNDSFFPAVHT-VRGIVKFYDSKR 121
GVG A G G P ++ S T + R+ + P + V G VK+++ +
Sbjct: 48 GVGAASGPAAGTPSAPGPRTPGNPATAASGTSAPPARSQADKPVLAIQVLGTVKWFNVRN 107
Query: 122 GFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNG 181
G+GFI R D KED+FVH+++I + NP+KF +S+G GE V+F++ G+K EA NVTGP G
Sbjct: 108 GYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEAANVTGPGG 167
Query: 182 IPVQGAPKVP 191
+PV+G+ P
Sbjct: 168 VPVKGSRYAP 177
Score = 225 (84.3 bits), Expect = 1.9e-18, P = 1.9e-18
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +S+G GE V+F++ G+K
Sbjct: 96 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEK 155
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PV+G+
Sbjct: 156 GAEAANVTGPGGVPVKGS 173
>UNIPROTKB|E2RMN5 [details] [associations]
symbol:YBX2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0005737
GO:GO:0006355 GO:GO:0007286 GO:GO:0017148 GO:GO:0003677
GO:GO:0048477 GO:GO:0003682 GO:GO:0045182 GO:GO:0048255
GO:GO:0008289 GO:GO:0003730 GO:GO:0005844 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0043021 InterPro:IPR019844
GO:GO:0051100 GeneTree:ENSGT00390000009256 OMA:MEGTDGV
EMBL:AAEX03003607 Ensembl:ENSCAFT00000021272 NextBio:20862641
Uniprot:E2RMN5
Length = 367
Score = 237 (88.5 bits), Expect = 7.7e-20, P = 7.7e-20
Identities = 52/130 (40%), Positives = 78/130 (60%)
Query: 64 GVGKKDIEAINVTGPNGIPVQGAPKSS-SETVSGTYRNDSFFPAVHT-VRGIVKFYDSKR 121
GVG A G G P ++ S T + R+ + P + V G VK+++ +
Sbjct: 48 GVGAASGPAAGTPSAPGPRTPGNPATAASGTPAPPARSQADKPVLAIQVLGTVKWFNVRN 107
Query: 122 GFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNG 181
G+GFI R D KED+FVH+++I + NP+KF +S+G GE V+F++ G+K EA NVTGP G
Sbjct: 108 GYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEAANVTGPGG 167
Query: 182 IPVQGAPKVP 191
+PV+G+ P
Sbjct: 168 VPVKGSRYAP 177
Score = 225 (84.3 bits), Expect = 2.0e-18, P = 2.0e-18
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +S+G GE V+F++ G+K
Sbjct: 96 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEK 155
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PV+G+
Sbjct: 156 GAEAANVTGPGGVPVKGS 173
>UNIPROTKB|Q9Y2T7 [details] [associations]
symbol:YBX2 "Y-box-binding protein 2" species:9606 "Homo
sapiens" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0007286
"spermatid development" evidence=IEA] [GO:0008289 "lipid binding"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IEA] [GO:0043021 "ribonucleoprotein complex binding"
evidence=IEA] [GO:0045182 "translation regulator activity"
evidence=IEA] [GO:0048255 "mRNA stabilization" evidence=IEA]
[GO:0048599 "oocyte development" evidence=IEA] [GO:0051100
"negative regulation of binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0007283 "spermatogenesis" evidence=TAS]
[GO:0009386 "translational attenuation" evidence=TAS]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0005634 GO:GO:0005737
EMBL:CH471108 GO:GO:0006355 GO:GO:0007286 GO:GO:0017148
GO:GO:0003677 GO:GO:0007283 GO:GO:0003682 GO:GO:0045182
GO:GO:0048255 GO:GO:0006366 GO:GO:0008289 GO:GO:0003730
GO:GO:0005844 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0043021 GO:GO:0048599 InterPro:IPR019844 GO:GO:0051100
eggNOG:COG1278 HOGENOM:HOG000116439 OrthoDB:EOG46DM3W EMBL:AF096834
EMBL:BC033800 EMBL:BC047760 IPI:IPI00250153 RefSeq:NP_057066.2
UniGene:Hs.567494 ProteinModelPortal:Q9Y2T7 SMR:Q9Y2T7
STRING:Q9Y2T7 PhosphoSite:Q9Y2T7 DMDM:116242847 PaxDb:Q9Y2T7
PRIDE:Q9Y2T7 Ensembl:ENST00000007699 GeneID:51087 KEGG:hsa:51087
UCSC:uc002gfq.2 CTD:51087 GeneCards:GC17M007191 HGNC:HGNC:17948
HPA:CAB012332 MIM:611447 neXtProt:NX_Q9Y2T7 PharmGKB:PA142670560
HOVERGEN:HBG079361 InParanoid:Q9Y2T7 KO:K09277 OMA:MEGTDGV
PhylomeDB:Q9Y2T7 ChiTaRS:YBX2 GenomeRNAi:51087 NextBio:53755
Bgee:Q9Y2T7 CleanEx:HS_YBX2 Genevestigator:Q9Y2T7
GermOnline:ENSG00000006047 GO:GO:0009386 Uniprot:Q9Y2T7
Length = 364
Score = 236 (88.1 bits), Expect = 9.5e-20, P = 9.5e-20
Identities = 50/120 (41%), Positives = 75/120 (62%)
Query: 77 GPNGIPVQGAPKSSSETVSGT----YRNDSFFPAVHT-VRGIVKFYDSKRGFGFITRLDN 131
G P P + + VSGT R+ + P + V G VK+++ + G+GFI R D
Sbjct: 56 GTPSAPGSRTPGNPATAVSGTPAPPARSQADKPVLAIQVLGTVKWFNVRNGYGFINRNDT 115
Query: 132 KEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGAPKVP 191
KED+FVH+++I + NP+KF +S+G GE V+F++ G+K EA NVTGP G+PV+G+ P
Sbjct: 116 KEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEATNVTGPGGVPVKGSRYAP 175
Score = 225 (84.3 bits), Expect = 1.9e-18, P = 1.9e-18
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +S+G GE V+F++ G+K
Sbjct: 94 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEK 153
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PV+G+
Sbjct: 154 GAEATNVTGPGGVPVKGS 171
>UNIPROTKB|P45441 [details] [associations]
symbol:ybx2-b "Y-box-binding protein 2-B" species:8355
"Xenopus laevis" [GO:0030529 "ribonucleoprotein complex"
evidence=IPI] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0005737
GO:GO:0006417 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
GO:GO:0003723 GO:GO:0030529 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR019844 HOVERGEN:HBG079361 EMBL:M80257
EMBL:BC155913 PIR:A41786 RefSeq:NP_001081167.1 UniGene:Xl.7706
ProteinModelPortal:P45441 SMR:P45441 PRIDE:P45441 GeneID:394429
KEGG:xla:394429 CTD:394429 Xenbase:XB-GENE-6254213 Uniprot:P45441
Length = 324
Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
Identities = 42/82 (51%), Positives = 63/82 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V+G VK+++ + G+GFI R D+KED+FVH+++I K NP+KF +S+G GE V+F++ G+K
Sbjct: 42 VQGTVKWFNVRNGYGFINRNDSKEDVFVHQTAIKKNNPRKFLRSVGDGETVEFDVVEGEK 101
Query: 170 DIEAINVTGPNGIPVQGAPKVP 191
EA NVTGP G+PV+G+ P
Sbjct: 102 GAEAANVTGPGGVPVKGSRFAP 123
Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
Identities = 41/78 (52%), Positives = 62/78 (79%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V+G VK+++ + G+GFI R D+KED+FVH+++I K NP+KF +S+G GE V+F++ G+K
Sbjct: 42 VQGTVKWFNVRNGYGFINRNDSKEDVFVHQTAIKKNNPRKFLRSVGDGETVEFDVVEGEK 101
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PV+G+
Sbjct: 102 GAEAANVTGPGGVPVKGS 119
>UNIPROTKB|F1M1Q9 [details] [associations]
symbol:F1M1Q9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 GeneTree:ENSGT00390000009256 IPI:IPI00949180
Ensembl:ENSRNOT00000068194 ArrayExpress:F1M1Q9 Uniprot:F1M1Q9
Length = 277
Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
Identities = 43/91 (47%), Positives = 67/91 (73%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V GIVK+++ +RG+GFI D +ED+FVH+++I K P+K+ +S+G GE V+F + G+K
Sbjct: 40 VLGIVKWFNVRRGYGFINSNDTREDVFVHQTAIKKNKPRKYLRSVGDGETVEFEVVEGEK 99
Query: 69 DIEAINVTGPNGIPVQGAPKSSSETVSGTYR 99
+EA NVTGP G+PVQG+ ++++ S YR
Sbjct: 100 GVEAANVTGPGGVPVQGSKHAAAD--SNHYR 128
Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
Identities = 50/114 (43%), Positives = 73/114 (64%)
Query: 76 TGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHT--VRGIVKFYDSKRGFGFITRLDNKE 133
TGP +P AP + S G +DS V GIVK+++ +RG+GFI D +E
Sbjct: 8 TGPPLLP-PSAPLTPSP---GCPHDDSACRQAQKSQVLGIVKWFNVRRGYGFINSNDTRE 63
Query: 134 DIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGA 187
D+FVH+++I K P+K+ +S+G GE V+F + G+K +EA NVTGP G+PVQG+
Sbjct: 64 DVFVHQTAIKKNKPRKYLRSVGDGETVEFEVVEGEKGVEAANVTGPGGVPVQGS 117
>UNIPROTKB|D4A0L4 [details] [associations]
symbol:Csda "DNA-binding protein A" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 RGD:621056 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 GeneTree:ENSGT00390000009256 IPI:IPI00959307
Ensembl:ENSRNOT00000068185 ArrayExpress:D4A0L4 Uniprot:D4A0L4
Length = 306
Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
Identities = 49/117 (41%), Positives = 76/117 (64%)
Query: 72 AINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHT-VRGIVKFYDSKRGFGFITRLD 130
A+ P G G P +S +G+ D+ + T V G VK+++ + G+GFI R D
Sbjct: 47 ALLAGSPGGDAAPG-PAPASSAPAGS--EDAEKKVLATKVLGTVKWFNVRNGYGFINRND 103
Query: 131 NKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGA 187
KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K EA NVTGP+G+PV+G+
Sbjct: 104 TKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGS 160
Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 83 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 142
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G+PV+G+
Sbjct: 143 GAEAANVTGPDGVPVEGS 160
>UNIPROTKB|D4AAT9 [details] [associations]
symbol:Csda "DNA-binding protein A" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 RGD:621056 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 IPI:IPI00947719 Ensembl:ENSRNOT00000007347
ArrayExpress:D4AAT9 Uniprot:D4AAT9
Length = 308
Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
Identities = 49/117 (41%), Positives = 76/117 (64%)
Query: 72 AINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHT-VRGIVKFYDSKRGFGFITRLD 130
A+ P G G P +S +G+ D+ + T V G VK+++ + G+GFI R D
Sbjct: 47 ALLAGSPGGDAAPG-PAPASSAPAGS--EDAEKKVLATKVLGTVKWFNVRNGYGFINRND 103
Query: 131 NKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGA 187
KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K EA NVTGP+G+PV+G+
Sbjct: 104 TKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGS 160
Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 83 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 142
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G+PV+G+
Sbjct: 143 GAEAANVTGPDGVPVEGS 160
>UNIPROTKB|F1LTA0 [details] [associations]
symbol:F1LTA0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 GeneTree:ENSGT00390000009256 IPI:IPI00950360
Ensembl:ENSRNOT00000065381 ArrayExpress:F1LTA0 Uniprot:F1LTA0
Length = 236
Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
Identities = 43/91 (47%), Positives = 67/91 (73%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V GIVK+++ +RG+GFI D +ED+FVH+++I K P+K+ +S+G GE V+F + G+K
Sbjct: 27 VLGIVKWFNVRRGYGFINSNDTREDVFVHQTAIKKNKPRKYLRSVGDGETVEFEVVEGEK 86
Query: 69 DIEAINVTGPNGIPVQGAPKSSSETVSGTYR 99
+EA NVTGP G+PVQG+ ++++ S YR
Sbjct: 87 GVEAANVTGPGGVPVQGSKHAAAD--SNHYR 115
Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V GIVK+++ +RG+GFI D +ED+FVH+++I K P+K+ +S+G GE V+F + G+K
Sbjct: 27 VLGIVKWFNVRRGYGFINSNDTREDVFVHQTAIKKNKPRKYLRSVGDGETVEFEVVEGEK 86
Query: 170 DIEAINVTGPNGIPVQGA 187
+EA NVTGP G+PVQG+
Sbjct: 87 GVEAANVTGPGGVPVQGS 104
>MGI|MGI:2137670 [details] [associations]
symbol:Ybx3 "Y box protein 3" species:10090 "Mus musculus"
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0001701 "in utero
embryonic development" evidence=IGI] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0003697 "single-stranded DNA binding" evidence=ISO;IDA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005844 "polysome" evidence=IDA] [GO:0005921 "gap
junction" evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IMP] [GO:0008584 "male gonad development" evidence=IMP]
[GO:0009566 "fertilization" evidence=IMP] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0043066 "negative
regulation of apoptotic process" evidence=IMP] [GO:0046622
"positive regulation of organ growth" evidence=IMP] [GO:0048642
"negative regulation of skeletal muscle tissue development"
evidence=IDA] [GO:0060547 "negative regulation of necrotic cell
death" evidence=ISO] [GO:0071356 "cellular response to tumor
necrosis factor" evidence=ISO] [GO:0071474 "cellular hyperosmotic
response" evidence=ISO] InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00313 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
MGI:MGI:2137670 GO:GO:0005634 GO:GO:0005737 GO:GO:0043066
GO:GO:0003677 GO:GO:0031100 GO:GO:0001701 GO:GO:0009566
GO:GO:0007283 GO:GO:0006351 GO:GO:0003723 GO:GO:0008584
GO:GO:0000122 GO:GO:0003730 GO:GO:0003697 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0046622 GO:GO:0005921
InterPro:IPR019844 eggNOG:COG1278 CTD:8531 HOGENOM:HOG000116439
HOVERGEN:HBG008757 KO:K06099 OMA:ENQQATS ChiTaRS:CSDA GO:GO:0048642
EMBL:AF246224 EMBL:AF248546 EMBL:AF248547 EMBL:BC048242
EMBL:BC062377 IPI:IPI00274739 IPI:IPI00330591 RefSeq:NP_035863.1
RefSeq:NP_620817.2 UniGene:Mm.458000 ProteinModelPortal:Q9JKB3
SMR:Q9JKB3 DIP:DIP-42746N IntAct:Q9JKB3 MINT:MINT-1891951
STRING:Q9JKB3 PhosphoSite:Q9JKB3 PaxDb:Q9JKB3 PRIDE:Q9JKB3
Ensembl:ENSMUST00000032309 Ensembl:ENSMUST00000087865 GeneID:56449
KEGG:mmu:56449 UCSC:uc009eit.1 GeneTree:ENSGT00390000009256
InParanoid:Q9JKB3 NextBio:312662 Bgee:Q9JKB3 CleanEx:MM_CSDA
Genevestigator:Q9JKB3 GermOnline:ENSMUSG00000030189 Uniprot:Q9JKB3
Length = 361
Score = 234 (87.4 bits), Expect = 1.5e-19, P = 1.5e-19
Identities = 49/117 (41%), Positives = 74/117 (63%)
Query: 72 AINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHT-VRGIVKFYDSKRGFGFITRLD 130
A+ P G G +SS G D+ + T V G VK+++ + G+GFI R D
Sbjct: 47 ALLAGSPGGDAAPGPAPASSAPAGG---EDAEKKVLATKVLGTVKWFNVRNGYGFINRND 103
Query: 131 NKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGA 187
KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K EA NVTGP+G+PV+G+
Sbjct: 104 TKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGS 160
Score = 227 (85.0 bits), Expect = 1.0e-18, P = 1.0e-18
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 83 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 142
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G+PV+G+
Sbjct: 143 GAEAANVTGPDGVPVEGS 160
>RGD|621056 [details] [associations]
symbol:Ybx3 "Y box binding protein 3" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=IMP] [GO:0001701 "in utero
embryonic development" evidence=ISO] [GO:0003677 "DNA binding"
evidence=ISO] [GO:0003697 "single-stranded DNA binding"
evidence=ISO;IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0005921 "gap junction" evidence=IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEP;ISO] [GO:0008584 "male
gonad development" evidence=ISO] [GO:0009566 "fertilization"
evidence=ISO] [GO:0031100 "organ regeneration" evidence=IEP]
[GO:0043066 "negative regulation of apoptotic process"
evidence=ISO] [GO:0046622 "positive regulation of organ growth"
evidence=ISO] [GO:0048642 "negative regulation of skeletal muscle
tissue development" evidence=ISO] [GO:0060547 "negative regulation
of necrotic cell death" evidence=ISO] [GO:0071356 "cellular
response to tumor necrosis factor" evidence=ISO] [GO:0071474
"cellular hyperosmotic response" evidence=ISO] [GO:0005844
"polysome" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 RGD:621056
GO:GO:0005634 GO:GO:0005737 GO:GO:0043066 GO:GO:0031100
GO:GO:0001701 GO:GO:0009566 GO:GO:0007283 GO:GO:0006351
GO:GO:0008584 GO:GO:0000122 GO:GO:0003730 GO:GO:0003697
GO:GO:0005844 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0046622 GO:GO:0005921 InterPro:IPR019844 eggNOG:COG1278
CTD:8531 HOGENOM:HOG000116439 HOVERGEN:HBG008757 KO:K06099
GO:GO:0048642 EMBL:U22893 EMBL:D28557 IPI:IPI00208217
IPI:IPI00231811 PIR:S51608 RefSeq:NP_114185.3 UniGene:Rn.3306
ProteinModelPortal:Q62764 SMR:Q62764 IntAct:Q62764
MINT:MINT-4597726 STRING:Q62764 PhosphoSite:Q62764 PRIDE:Q62764
GeneID:83807 KEGG:rno:83807 UCSC:RGD:621056 InParanoid:Q62764
ArrayExpress:Q62764 Genevestigator:Q62764
GermOnline:ENSRNOG00000005480 Uniprot:Q62764
Length = 361
Score = 233 (87.1 bits), Expect = 2.0e-19, P = 2.0e-19
Identities = 49/117 (41%), Positives = 76/117 (64%)
Query: 72 AINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHT-VRGIVKFYDSKRGFGFITRLD 130
A+ P G G P +S +G+ D+ + T V G VK+++ + G+GFI R D
Sbjct: 47 ALLAGSPGGDAAPG-PAPASSAPAGS--EDAEKKVLATKVLGTVKWFNVRNGYGFINRND 103
Query: 131 NKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGA 187
KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K EA NVTGP+G+PV+G+
Sbjct: 104 TKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGS 160
Score = 227 (85.0 bits), Expect = 1.0e-18, P = 1.0e-18
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 83 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 142
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G+PV+G+
Sbjct: 143 GAEAANVTGPDGVPVEGS 160
>UNIPROTKB|F1MA18 [details] [associations]
symbol:Csda "DNA-binding protein A" species:10116 "Rattus
norvegicus" [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005844
"polysome" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008584 "male gonad development"
evidence=IEA] [GO:0009566 "fertilization" evidence=IEA] [GO:0043066
"negative regulation of apoptotic process" evidence=IEA]
[GO:0046622 "positive regulation of organ growth" evidence=IEA]
[GO:0048642 "negative regulation of skeletal muscle tissue
development" evidence=IEA] InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00313 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
RGD:621056 GO:GO:0005634 GO:GO:0005737 GO:GO:0043066 GO:GO:0006355
GO:GO:0003677 GO:GO:0001701 GO:GO:0009566 GO:GO:0007283
GO:GO:0008584 GO:GO:0003730 GO:GO:0005844 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0046622 InterPro:IPR019844
OMA:ENQQATS GO:GO:0048642 GeneTree:ENSGT00390000009256
IPI:IPI01016461 Ensembl:ENSRNOT00000007427 ArrayExpress:F1MA18
Uniprot:F1MA18
Length = 361
Score = 233 (87.1 bits), Expect = 2.0e-19, P = 2.0e-19
Identities = 49/117 (41%), Positives = 76/117 (64%)
Query: 72 AINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHT-VRGIVKFYDSKRGFGFITRLD 130
A+ P G G P +S +G+ D+ + T V G VK+++ + G+GFI R D
Sbjct: 47 ALLAGSPGGDAAPG-PAPASSAPAGS--EDAEKKVLATKVLGTVKWFNVRNGYGFINRND 103
Query: 131 NKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGA 187
KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K EA NVTGP+G+PV+G+
Sbjct: 104 TKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGS 160
Score = 227 (85.0 bits), Expect = 1.0e-18, P = 1.0e-18
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 83 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 142
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G+PV+G+
Sbjct: 143 GAEAANVTGPDGVPVEGS 160
>UNIPROTKB|A5D7Q4 [details] [associations]
symbol:CSDA "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048642 "negative regulation of skeletal muscle tissue
development" evidence=IEA] [GO:0046622 "positive regulation of
organ growth" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0009566 "fertilization"
evidence=IEA] [GO:0008584 "male gonad development" evidence=IEA]
[GO:0005844 "polysome" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00313 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
GO:GO:0005634 GO:GO:0005737 GO:GO:0043066 GO:GO:0006355
GO:GO:0003677 GO:GO:0001701 GO:GO:0009566 GO:GO:0007283
GO:GO:0008584 GO:GO:0003730 GO:GO:0005844 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0046622 InterPro:IPR019844
eggNOG:COG1278 CTD:8531 HOGENOM:HOG000116439 HOVERGEN:HBG008757
KO:K06099 OMA:ENQQATS GO:GO:0048642 GeneTree:ENSGT00390000009256
EMBL:DAAA02014333 EMBL:BC140644 IPI:IPI00852465
RefSeq:NP_001091543.1 UniGene:Bt.7655 SMR:A5D7Q4 STRING:A5D7Q4
Ensembl:ENSBTAT00000012735 GeneID:533297 KEGG:bta:533297
InParanoid:A5D7Q4 NextBio:20875990 Uniprot:A5D7Q4
Length = 376
Score = 234 (87.4 bits), Expect = 2.1e-19, P = 2.1e-19
Identities = 49/115 (42%), Positives = 75/115 (65%)
Query: 75 VTG-PNGIPVQGAPKSSSETVSGTYRNDSFFPAVHT-VRGIVKFYDSKRGFGFITRLDNK 132
V+G P G G +S G+ D+ + T V G VK+++ + G+GFI R D K
Sbjct: 62 VSGNPGGDAAPGTAAPASSAAVGS--EDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTK 119
Query: 133 EDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGA 187
ED+FVH+++I K NP+K+ +S+G GE V+F++ G+K EA NVTGP+G+PV+G+
Sbjct: 120 EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGS 174
Score = 227 (85.0 bits), Expect = 1.3e-18, P = 1.3e-18
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 97 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 156
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G+PV+G+
Sbjct: 157 GAEAANVTGPDGVPVEGS 174
>RGD|1305068 [details] [associations]
symbol:Ybx2 "Y box binding protein 2" species:10116 "Rattus
norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA;ISO] [GO:0003729 "mRNA binding" evidence=ISO]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA;ISO] [GO:0005737
"cytoplasm" evidence=ISO;IDA] [GO:0005844 "polysome"
evidence=IEA;ISO] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0007286 "spermatid development"
evidence=IEA;ISO] [GO:0008289 "lipid binding" evidence=IEA;ISO]
[GO:0017148 "negative regulation of translation" evidence=IEA;ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO] [GO:0043021
"ribonucleoprotein complex binding" evidence=IEA;ISO] [GO:0045182
"translation regulator activity" evidence=IEA;ISO] [GO:0048255
"mRNA stabilization" evidence=IEA;ISO] [GO:0048477 "oogenesis"
evidence=ISO] [GO:0048599 "oocyte development" evidence=IEP]
[GO:0051100 "negative regulation of binding" evidence=IEA;ISO]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 RGD:1305068 GO:GO:0005737
GO:GO:0006355 GO:GO:0007286 GO:GO:0017148 GO:GO:0003677
GO:GO:0003682 GO:GO:0045182 GO:GO:0048255 GO:GO:0008289
GO:GO:0003730 GO:GO:0005844 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0043021 GO:GO:0048599 InterPro:IPR019844
GO:GO:0051100 OrthoDB:EOG46DM3W GeneTree:ENSGT00390000009256
CTD:51087 KO:K09277 OMA:MEGTDGV IPI:IPI00369907
RefSeq:XP_001079683.1 RefSeq:XP_220618.3 ProteinModelPortal:D4A3P0
Ensembl:ENSRNOT00000023003 GeneID:303250 KEGG:rno:303250
UCSC:RGD:1305068 NextBio:650980 ArrayExpress:D4A3P0 Uniprot:D4A3P0
Length = 359
Score = 232 (86.7 bits), Expect = 2.5e-19, P = 2.5e-19
Identities = 49/120 (40%), Positives = 74/120 (61%)
Query: 77 GPNGIPVQGAPKSSSETVSGT----YRNDSFFPAVHT-VRGIVKFYDSKRGFGFITRLDN 131
G P P + + SGT R+ + P + V G VK+++ + G+GFI R D
Sbjct: 57 GTPSAPGPRTPGNQATAASGTPAPPARSQADKPVLAIQVLGTVKWFNVRNGYGFINRNDT 116
Query: 132 KEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGAPKVP 191
KED+FVH+++I + NP+KF +S+G GE V+F++ G+K EA NVTGP G+PV+G+ P
Sbjct: 117 KEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVKGSRYAP 176
Score = 225 (84.3 bits), Expect = 1.7e-18, P = 1.7e-18
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +S+G GE V+F++ G+K
Sbjct: 95 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEK 154
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PV+G+
Sbjct: 155 GAEAANVTGPGGVPVKGS 172
>UNIPROTKB|F1SQ46 [details] [associations]
symbol:CSDA "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0006355 GO:GO:0003677
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 KO:K06099 GeneTree:ENSGT00390000009256
EMBL:CU856689 RefSeq:XP_003355623.1 UniGene:Ssc.9655
Ensembl:ENSSSCT00000000680 GeneID:100518125 KEGG:ssc:100518125
Uniprot:F1SQ46
Length = 312
Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
Identities = 48/107 (44%), Positives = 74/107 (69%)
Query: 82 PVQGAPKSSSETVSGTYRNDSFFPAVHT-VRGIVKFYDSKRGFGFITRLDNKEDIFVHKS 140
P AP SS+ +G+ D+ + T V G VK+++ + G+GFI R D KED+FVH++
Sbjct: 75 PGTAAPASSA--AAGS--EDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQT 130
Query: 141 SIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGA 187
+I K NP+K+ +S+G GE V+F++ G+K EA NVTGP+G+PV+G+
Sbjct: 131 AIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGS 177
Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 100 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 159
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G+PV+G+
Sbjct: 160 GAEAANVTGPDGVPVEGS 177
>UNIPROTKB|F1NFC0 [details] [associations]
symbol:YBX1 "Nuclease-sensitive element-binding protein 1"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00313 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
GO:GO:0006355 GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR019844 GeneTree:ENSGT00390000009256
IPI:IPI00587895 EMBL:AADN02073477 Ensembl:ENSGALT00000007741
ArrayExpress:F1NFC0 Uniprot:F1NFC0
Length = 273
Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 4 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 63
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 64 GAEAANVTGPGGVPVQGS 81
Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 4 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 63
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 64 GAEAANVTGPGGVPVQGS 81
>UNIPROTKB|F1NKY2 [details] [associations]
symbol:YBX1 "Nuclease-sensitive element-binding protein 1"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00313 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
GO:GO:0006355 GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR019844 GeneTree:ENSGT00390000009256
EMBL:AADN02073477 IPI:IPI00819706 Ensembl:ENSGALT00000039197
ArrayExpress:F1NKY2 Uniprot:F1NKY2
Length = 269
Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 4 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 63
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 64 GAEAANVTGPGGVPVQGS 81
Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 4 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 63
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 64 GAEAANVTGPGGVPVQGS 81
>UNIPROTKB|Q06066 [details] [associations]
symbol:YBX1 "Nuclease-sensitive element-binding protein 1"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0071204 "histone pre-mRNA 3'end processing complex"
evidence=ISS] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0005737
GO:GO:0006355 GO:GO:0008380 GO:GO:0003677 GO:GO:0006397
GO:GO:0006351 GO:GO:0003723 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR019844 HOGENOM:HOG000116439
HOVERGEN:HBG008757 OrthoDB:EOG46DM3W GO:GO:0071204 EMBL:L13032
IPI:IPI00587895 PIR:A48136 UniGene:Gga.4145
ProteinModelPortal:Q06066 SMR:Q06066 STRING:Q06066 PRIDE:Q06066
eggNOG:NOG326255 ArrayExpress:Q06066 Uniprot:Q06066
Length = 321
Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 56 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 115
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 116 GAEAANVTGPGGVPVQGS 133
Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 56 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 115
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 116 GAEAANVTGPGGVPVQGS 133
>UNIPROTKB|F1MZ92 [details] [associations]
symbol:YBX1 "Nuclease-sensitive element-binding protein 1"
species:9913 "Bos taurus" [GO:0071204 "histone pre-mRNA 3'end
processing complex" evidence=IEA] [GO:0070937 "CRD-mediated mRNA
stability complex" evidence=IEA] [GO:0070934 "CRD-mediated mRNA
stabilization" evidence=IEA] [GO:0051154 "negative regulation of
striated muscle cell differentiation" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IEA] [GO:0003697 "single-stranded
DNA binding" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0001701 GO:GO:0000122
GO:GO:0003697 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0010494 InterPro:IPR019844 GeneTree:ENSGT00390000009256
GO:GO:0005689 GO:GO:0070937 GO:GO:0070934 GO:GO:0071204
GO:GO:0051154 IPI:IPI00689440 OMA:VEGADNQ EMBL:DAAA02009073
EMBL:DAAA02009074 EMBL:DAAA02009075 Ensembl:ENSBTAT00000023094
ArrayExpress:F1MZ92 Uniprot:F1MZ92
Length = 324
Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 59 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 118
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 119 GAEAANVTGPGGVPVQGS 136
Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 59 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 118
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 119 GAEAANVTGPGGVPVQGS 136
>UNIPROTKB|P67808 [details] [associations]
symbol:YBX1 "Nuclease-sensitive element-binding protein 1"
species:9913 "Bos taurus" [GO:0003697 "single-stranded DNA binding"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS] [GO:0070934
"CRD-mediated mRNA stabilization" evidence=ISS] [GO:0010494
"cytoplasmic stress granule" evidence=ISS] [GO:0071204 "histone
pre-mRNA 3'end processing complex" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0005576
"extracellular region" evidence=IEA] [GO:0051781 "positive
regulation of cell division" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0005576
GO:GO:0006355 GO:GO:0008380 GO:GO:0051781 GO:GO:0006397
GO:GO:0006351 GO:GO:0003723 GO:GO:0003697 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0010494 InterPro:IPR019844
eggNOG:COG1278 HOGENOM:HOG000116439 HOVERGEN:HBG008757
OrthoDB:EOG46DM3W GO:GO:0070934 GO:GO:0071204 EMBL:M95793
EMBL:BC105363 IPI:IPI00689440 PIR:I39382 PIR:JQ2292
RefSeq:NP_777240.1 UniGene:Bt.5332 ProteinModelPortal:P67808
SMR:P67808 STRING:P67808 PRIDE:P67808 GeneID:287023 KEGG:bta:287023
CTD:4904 InParanoid:P67808 KO:K09276 NextBio:20806545
Uniprot:P67808
Length = 324
Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 59 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 118
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 119 GAEAANVTGPGGVPVQGS 136
Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 59 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 118
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 119 GAEAANVTGPGGVPVQGS 136
>UNIPROTKB|P67809 [details] [associations]
symbol:YBX1 "Nuclease-sensitive element-binding protein 1"
species:9606 "Homo sapiens" [GO:0051781 "positive regulation of
cell division" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0001701 "in utero embryonic development" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA] [GO:0051154
"negative regulation of striated muscle cell differentiation"
evidence=IEA] [GO:0005576 "extracellular region" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IDA;TAS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IDA;NAS] [GO:0045892 "negative regulation
of transcription, DNA-dependent" evidence=NAS] [GO:0003723 "RNA
binding" evidence=IDA;NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005689 "U12-type spliceosomal complex"
evidence=IDA] [GO:0071204 "histone pre-mRNA 3'end processing
complex" evidence=ISS] [GO:0070937 "CRD-mediated mRNA stability
complex" evidence=IDA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0070934 "CRD-mediated mRNA stabilization"
evidence=IMP] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0003690 "double-stranded DNA binding" evidence=TAS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=TAS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0043231 "intracellular membrane-bounded organelle"
evidence=IDA] Reactome:REACT_71 InterPro:IPR002059
InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 GO:GO:0045892 GO:GO:0005576 GO:GO:0005654
GO:GO:0051781 GO:GO:0001701 Reactome:REACT_1675 GO:GO:0003700
GO:GO:0003723 GO:GO:0000122 GO:GO:0006366 GO:GO:0003690
GO:GO:0003697 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
Pathway_Interaction_DB:ptp1bpathway GO:GO:0000398 GO:GO:0010494
InterPro:IPR019844 eggNOG:COG1278 HOGENOM:HOG000116439
HOVERGEN:HBG008757 OrthoDB:EOG46DM3W GO:GO:0005689 GO:GO:0070937
GO:GO:0070934 GO:GO:0071204 GO:GO:0051154 PIR:I39382 CTD:4904
KO:K09276 EMBL:M24070 EMBL:J03827 EMBL:M83234 EMBL:L28809
EMBL:BC002411 EMBL:BC010430 EMBL:BC015208 EMBL:BC038384
EMBL:BC065571 EMBL:BC070084 EMBL:BC071708 EMBL:BC090038
EMBL:BC098435 EMBL:BC106045 IPI:IPI00031812 PIR:S34426
RefSeq:NP_004550.2 UniGene:Hs.473583 PDB:1H95 PDBsum:1H95
ProteinModelPortal:P67809 SMR:P67809 DIP:DIP-29405N IntAct:P67809
MINT:MINT-5001202 STRING:P67809 PhosphoSite:P67809 DMDM:54040031
PaxDb:P67809 PRIDE:P67809 DNASU:4904 Ensembl:ENST00000321358
GeneID:4904 KEGG:hsa:4904 UCSC:uc001chs.3 GeneCards:GC01P043148
H-InvDB:HIX0037767 H-InvDB:HIX0172381 HGNC:HGNC:8014 HPA:CAB005875
HPA:HPA040304 MIM:154030 neXtProt:NX_P67809 PharmGKB:PA31791
InParanoid:P67809 OMA:VEGADNQ PhylomeDB:P67809
EvolutionaryTrace:P67809 GenomeRNAi:4904 NextBio:18871
PMAP-CutDB:P67809 ArrayExpress:P67809 Bgee:P67809 CleanEx:HS_YBX1
Genevestigator:P67809 GermOnline:ENSG00000065978 Uniprot:P67809
Length = 324
Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 59 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 118
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 119 GAEAANVTGPGGVPVQGS 136
Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 59 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 118
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 119 GAEAANVTGPGGVPVQGS 136
>UNIPROTKB|P21573 [details] [associations]
symbol:ybx1 "Nuclease-sensitive element-binding protein 1"
species:8355 "Xenopus laevis" [GO:0071204 "histone pre-mRNA 3'end
processing complex" evidence=ISS] InterPro:IPR002059
InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 GO:GO:0005737 GO:GO:0006355 GO:GO:0008380
GO:GO:0003677 GO:GO:0006397 GO:GO:0006351 GO:GO:0003723
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 HOVERGEN:HBG008757 GO:GO:0071204 EMBL:M59453
PIR:A38274 UniGene:Xl.2633 ProteinModelPortal:P21573 SMR:P21573
PRIDE:P21573 Xenbase:XB-GENE-865405 Uniprot:P21573
Length = 303
Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 37 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 96
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 97 GAEAANVTGPEGVPVQGS 114
Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 37 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 96
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 97 GAEAANVTGPEGVPVQGS 114
>UNIPROTKB|Q28618 [details] [associations]
symbol:YBX1 "Nuclease-sensitive element-binding protein 1"
species:9986 "Oryctolagus cuniculus" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0030529 "ribonucleoprotein complex" evidence=ISS]
[GO:0070934 "CRD-mediated mRNA stabilization" evidence=ISS]
[GO:0071204 "histone pre-mRNA 3'end processing complex"
evidence=ISS] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0005576
GO:GO:0006355 GO:GO:0008380 GO:GO:0003677 GO:GO:0051781
GO:GO:0006397 GO:GO:0006351 GO:GO:0003723 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0010494 InterPro:IPR019844
HOGENOM:HOG000116439 HOVERGEN:HBG008757 OrthoDB:EOG46DM3W
GO:GO:0070934 GO:GO:0071204 CTD:4904 eggNOG:NOG326255 EMBL:U16821
PIR:A55971 RefSeq:NP_001076254.1 UniGene:Ocu.6201
ProteinModelPortal:Q28618 SMR:Q28618 GeneID:100009583
Uniprot:Q28618
Length = 324
Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 59 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 118
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 119 GAEAANVTGPGGVPVQGS 136
Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 59 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 118
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 119 GAEAANVTGPGGVPVQGS 136
>MGI|MGI:99146 [details] [associations]
symbol:Ybx1 "Y box protein 1" species:10090 "Mus musculus"
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IGI;ISO;IDA] [GO:0001701 "in utero
embryonic development" evidence=IGI;IMP] [GO:0002039 "p53 binding"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003697
"single-stranded DNA binding" evidence=ISO;IDA] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0003729 "mRNA binding" evidence=ISO]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005576
"extracellular region" evidence=IEA] [GO:0005634 "nucleus"
evidence=IGI;ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=ISO] [GO:0008284 "positive
regulation of cell proliferation" evidence=ISO] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=ISO] [GO:0030425 "dendrite" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0043066 "negative
regulation of apoptotic process" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0046627 "negative regulation of insulin receptor
signaling pathway" evidence=ISO] [GO:0048471 "perinuclear region of
cytoplasm" evidence=ISO] [GO:0051154 "negative regulation of
striated muscle cell differentiation" evidence=IDA] [GO:0051781
"positive regulation of cell division" evidence=IEA] [GO:0070934
"CRD-mediated mRNA stabilization" evidence=ISO] [GO:0070937
"CRD-mediated mRNA stability complex" evidence=ISO] [GO:0071204
"histone pre-mRNA 3'end processing complex" evidence=IDA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 MGI:MGI:99146 GO:GO:0005576
GO:GO:0008380 GO:GO:0051781 GO:GO:0001701 GO:GO:0006397
GO:GO:0006351 GO:GO:0003723 GO:GO:0000122 GO:GO:0003697
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0010494
InterPro:IPR019844 eggNOG:COG1278 HOGENOM:HOG000116439
HOVERGEN:HBG008757 OrthoDB:EOG46DM3W GO:GO:0005689 GO:GO:0070937
GO:GO:0070934 GO:GO:0071204 GO:GO:0051154 CTD:4904 KO:K09276
OMA:VEGADNQ EMBL:M60419 EMBL:M62867 EMBL:X57621 EMBL:BC013450
EMBL:BC013620 EMBL:BC029747 EMBL:BC031472 EMBL:BC061634
IPI:IPI00120886 PIR:I58195 RefSeq:NP_035862.2 UniGene:Mm.258204
ProteinModelPortal:P62960 SMR:P62960 DIP:DIP-34256N IntAct:P62960
MINT:MINT-1212991 STRING:P62960 PhosphoSite:P62960 PaxDb:P62960
PRIDE:P62960 Ensembl:ENSMUST00000079644 GeneID:22608 KEGG:mmu:22608
InParanoid:P62960 ChiTaRS:YBX1 NextBio:302963 Bgee:P62960
CleanEx:MM_YBX1 Genevestigator:P62960 GermOnline:ENSMUSG00000028639
Uniprot:P62960
Length = 322
Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 57 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 116
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 117 GAEAANVTGPGGVPVQGS 134
Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 57 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 116
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 117 GAEAANVTGPGGVPVQGS 134
>RGD|61843 [details] [associations]
symbol:Ybx1 "Y box binding protein 1" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=ISO;IDA] [GO:0001701 "in utero
embryonic development" evidence=ISO] [GO:0002039 "p53 binding"
evidence=IMP] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003697
"single-stranded DNA binding" evidence=ISO;IDA] [GO:0003723 "RNA
binding" evidence=ISO;ISS] [GO:0003729 "mRNA binding" evidence=IPI]
[GO:0005576 "extracellular region" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005689 "U12-type spliceosomal
complex" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IPI] [GO:0008284 "positive
regulation of cell proliferation" evidence=IMP] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=ISO;ISS] [GO:0030425 "dendrite" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0043066 "negative
regulation of apoptotic process" evidence=IDA] [GO:0043231
"intracellular membrane-bounded organelle" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=IDA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0046627 "negative regulation of insulin receptor
signaling pathway" evidence=IMP] [GO:0048471 "perinuclear region of
cytoplasm" evidence=IDA] [GO:0051154 "negative regulation of
striated muscle cell differentiation" evidence=ISO] [GO:0051781
"positive regulation of cell division" evidence=IEA] [GO:0070934
"CRD-mediated mRNA stabilization" evidence=ISO;ISS] [GO:0070937
"CRD-mediated mRNA stability complex" evidence=ISO] [GO:0071204
"histone pre-mRNA 3'end processing complex" evidence=ISO;ISS]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 RGD:61843 GO:GO:0048471 GO:GO:0043066
GO:GO:0005576 GO:GO:0008380 GO:GO:0008284 GO:GO:0051781
GO:GO:0030425 GO:GO:0043565 GO:GO:0003729 GO:GO:0006397
GO:GO:0045944 GO:GO:0006351 GO:GO:0000122 GO:GO:0003697
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0046627
GO:GO:0010494 GO:GO:0002039 InterPro:IPR019844 eggNOG:COG1278
HOGENOM:HOG000116439 HOVERGEN:HBG008757 OrthoDB:EOG46DM3W
GO:GO:0070934 GO:GO:0071204 CTD:4904 KO:K09276 EMBL:M57299
EMBL:M69138 EMBL:D13309 EMBL:BC072486 EMBL:BC098672 IPI:IPI00551815
PIR:A23677 RefSeq:NP_113751.3 UniGene:Rn.110976 UniGene:Rn.194909
ProteinModelPortal:P62961 SMR:P62961 IntAct:P62961
PhosphoSite:P62961 PRIDE:P62961 GeneID:500538 KEGG:rno:500538
UCSC:RGD:61843 InParanoid:P62961 NextBio:706472 ArrayExpress:P62961
Genevestigator:P62961 GermOnline:ENSRNOG00000032902 Uniprot:P62961
Length = 322
Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 57 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 116
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 117 GAEAANVTGPGGVPVQGS 134
Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 57 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 116
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 117 GAEAANVTGPGGVPVQGS 134
>RGD|6486912 [details] [associations]
symbol:LOC100912427 "nuclease-sensitive element-binding protein
1-like" species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00313 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
RGD:6486912 GO:GO:0006355 GO:GO:0003677 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR019844
GeneTree:ENSGT00390000009256 OMA:VEGADNQ IPI:IPI00568666
RefSeq:XP_003749029.1 Ensembl:ENSRNOT00000058700 GeneID:100912427
KEGG:rno:100912427 ArrayExpress:F1LPL7 Uniprot:F1LPL7
Length = 322
Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 57 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 116
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 117 GAEAANVTGPGGVPVQGS 134
Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 57 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 116
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 117 GAEAANVTGPGGVPVQGS 134
>ZFIN|ZDB-GENE-000629-3 [details] [associations]
symbol:ybx1 "Y box binding protein 1" species:7955
"Danio rerio" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR002059
InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 ZFIN:ZDB-GENE-000629-3 GO:GO:0006355 GO:GO:0003677
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 HOVERGEN:HBG008757 EMBL:BC070000 IPI:IPI00837236
UniGene:Dr.59019 ProteinModelPortal:Q6NSP3 SMR:Q6NSP3
InParanoid:Q6NSP3 ArrayExpress:Q6NSP3 Uniprot:Q6NSP3
Length = 310
Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
Identities = 48/106 (45%), Positives = 67/106 (63%)
Query: 82 PVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSS 141
P A SS + T D A V G VK+++ + G+GFI R D KED+FVH+++
Sbjct: 13 PAADAESPSSPAAAAT-AGDKKVIATK-VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTA 70
Query: 142 IVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGA 187
I K NP+K+ +S+G GE V+F + G+K EA NVTGP G+PVQG+
Sbjct: 71 IKKNNPRKYLRSVGDGETVEFAVVEGEKGAEAANVTGPGGVPVQGS 116
Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
Identities = 41/78 (52%), Positives = 59/78 (75%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F + G+K
Sbjct: 39 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFAVVEGEK 98
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 99 GAEAANVTGPGGVPVQGS 116
>UNIPROTKB|E2R1A0 [details] [associations]
symbol:YBX1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 GeneTree:ENSGT00390000009256 EMBL:AAEX03009523
EMBL:AAEX03009522 ProteinModelPortal:E2R1A0 PRIDE:E2R1A0
Ensembl:ENSCAFT00000004010 OMA:EGNESAP NextBio:20892779
Uniprot:E2R1A0
Length = 359
Score = 229 (85.7 bits), Expect = 5.7e-19, P = 5.7e-19
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 94 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 153
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 154 GAEAANVTGPGGVPVQGS 171
Score = 229 (85.7 bits), Expect = 5.7e-19, P = 5.7e-19
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 94 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 153
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 154 GAEAANVTGPGGVPVQGS 171
>UNIPROTKB|I3LQF8 [details] [associations]
symbol:CSDA "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048642 "negative regulation of skeletal muscle tissue
development" evidence=IEA] [GO:0046622 "positive regulation of
organ growth" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0009566 "fertilization"
evidence=IEA] [GO:0008584 "male gonad development" evidence=IEA]
[GO:0005844 "polysome" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00313 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
GO:GO:0005634 GO:GO:0005737 GO:GO:0043066 GO:GO:0006355
GO:GO:0003677 GO:GO:0001701 GO:GO:0009566 GO:GO:0007283
GO:GO:0008584 GO:GO:0003730 GO:GO:0005844 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0046622 InterPro:IPR019844
KO:K06099 OMA:ENQQATS GO:GO:0048642 GeneTree:ENSGT00390000009256
EMBL:CU856689 UniGene:Ssc.9655 GeneID:100518125 KEGG:ssc:100518125
RefSeq:XP_003126523.1 Ensembl:ENSSSCT00000027246 Uniprot:I3LQF8
Length = 380
Score = 230 (86.0 bits), Expect = 6.4e-19, P = 6.4e-19
Identities = 48/107 (44%), Positives = 74/107 (69%)
Query: 82 PVQGAPKSSSETVSGTYRNDSFFPAVHT-VRGIVKFYDSKRGFGFITRLDNKEDIFVHKS 140
P AP SS+ +G+ D+ + T V G VK+++ + G+GFI R D KED+FVH++
Sbjct: 75 PGTAAPASSA--AAGS--EDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQT 130
Query: 141 SIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGA 187
+I K NP+K+ +S+G GE V+F++ G+K EA NVTGP+G+PV+G+
Sbjct: 131 AIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGS 177
Score = 227 (85.0 bits), Expect = 1.4e-18, P = 1.4e-18
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 100 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 159
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G+PV+G+
Sbjct: 160 GAEAANVTGPDGVPVEGS 177
>UNIPROTKB|F1NQ33 [details] [associations]
symbol:F1NQ33 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0006355 GO:GO:0003677
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 GeneTree:ENSGT00390000009256 EMBL:AADN02037767
EMBL:AADN02037762 EMBL:AADN02037763 EMBL:AADN02037764
EMBL:AADN02037765 EMBL:AADN02037766 IPI:IPI00819532
Ensembl:ENSGALT00000037028 ArrayExpress:F1NQ33 Uniprot:F1NQ33
Length = 104
Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 4 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 63
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G+PV+G+
Sbjct: 64 GAEAANVTGPDGVPVEGS 81
Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 4 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 63
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G+PV+G+
Sbjct: 64 GAEAANVTGPDGVPVEGS 81
>UNIPROTKB|J9NTE1 [details] [associations]
symbol:CSDA "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 GeneTree:ENSGT00390000009256 EMBL:AAEX03015257
EMBL:AAEX03015256 Ensembl:ENSCAFT00000048154 Uniprot:J9NTE1
Length = 314
Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 23 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 82
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G+PV+G+
Sbjct: 83 GAEAANVTGPDGVPVEGS 100
Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 23 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 82
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G+PV+G+
Sbjct: 83 GAEAANVTGPDGVPVEGS 100
>UNIPROTKB|J9NV99 [details] [associations]
symbol:CSDA "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 GeneTree:ENSGT00390000009256 EMBL:AAEX03015257
EMBL:AAEX03015256 Ensembl:ENSCAFT00000044569 Uniprot:J9NV99
Length = 217
Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 6 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 65
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G+PV+G+
Sbjct: 66 GAEAANVTGPDGVPVEGS 83
Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 6 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 65
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G+PV+G+
Sbjct: 66 GAEAANVTGPDGVPVEGS 83
>UNIPROTKB|F1LXN5 [details] [associations]
symbol:Csda "DNA-binding protein A" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 RGD:621056 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 IPI:IPI00951973 PRIDE:F1LXN5
Ensembl:ENSRNOT00000068352 ArrayExpress:F1LXN5 Uniprot:F1LXN5
Length = 273
Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 66 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 125
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G+PV+G+
Sbjct: 126 GAEAANVTGPDGVPVEGS 143
Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 66 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 125
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G+PV+G+
Sbjct: 126 GAEAANVTGPDGVPVEGS 143
>UNIPROTKB|P16989 [details] [associations]
symbol:CSDA "DNA-binding protein A" species:9606 "Homo
sapiens" [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0001701 "in utero embryonic development" evidence=IEA]
[GO:0005844 "polysome" evidence=IEA] [GO:0008584 "male gonad
development" evidence=IEA] [GO:0009566 "fertilization"
evidence=IEA] [GO:0043066 "negative regulation of apoptotic
process" evidence=IEA] [GO:0046622 "positive regulation of organ
growth" evidence=IEA] [GO:0048642 "negative regulation of skeletal
muscle tissue development" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0003690 "double-stranded DNA binding"
evidence=TAS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=NAS] [GO:0003714
"transcription corepressor activity" evidence=TAS] [GO:0009409
"response to cold" evidence=TAS] [GO:0017048 "Rho GTPase binding"
evidence=ISS] [GO:0060547 "negative regulation of necrotic cell
death" evidence=IMP] [GO:0071474 "cellular hyperosmotic response"
evidence=IMP] [GO:0071356 "cellular response to tumor necrosis
factor" evidence=IMP] [GO:2000767 "positive regulation of
cytoplasmic translation" evidence=ISS] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005923 "tight junction" evidence=ISS] [GO:0048471 "perinuclear
region of cytoplasm" evidence=ISS] [GO:0070935 "3'-UTR-mediated
mRNA stabilization" evidence=IC] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0005634
GO:GO:0005737 GO:GO:0003714 GO:GO:0043066 GO:GO:0031100
GO:GO:0009409 GO:GO:0001701 GO:GO:0009566 GO:GO:0003700
GO:GO:0007283 GO:GO:0006351 GO:GO:0008584 GO:GO:0000122
GO:GO:0003730 GO:GO:0003690 GO:GO:0003697 EMBL:CH471094
GO:GO:0005844 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0046622 GO:GO:0005921 InterPro:IPR019844 eggNOG:COG1278
EMBL:M24069 EMBL:L29071 EMBL:L29064 EMBL:L29065 EMBL:L29066
EMBL:L29067 EMBL:L29068 EMBL:L29069 EMBL:L29070 EMBL:X95325
EMBL:X72712 EMBL:AK314846 EMBL:BC008801 EMBL:BC015564 EMBL:BC015913
EMBL:BC021926 IPI:IPI00031801 IPI:IPI00219147 IPI:IPI00219148
PIR:I53354 PIR:S69501 RefSeq:NP_001138898.1 RefSeq:NP_003642.3
UniGene:Hs.221889 ProteinModelPortal:P16989 SMR:P16989
DIP:DIP-42489N IntAct:P16989 MINT:MINT-1152000 STRING:P16989
PhosphoSite:P16989 DMDM:97536050 PaxDb:P16989 PRIDE:P16989
DNASU:8531 Ensembl:ENST00000228251 Ensembl:ENST00000279550
GeneID:8531 KEGG:hsa:8531 UCSC:uc001qyt.3 UCSC:uc001qyu.3 CTD:8531
GeneCards:GC12M010851 HGNC:HGNC:2428 HPA:HPA034838 MIM:603437
neXtProt:NX_P16989 PharmGKB:PA26929 HOGENOM:HOG000116439
HOVERGEN:HBG008757 InParanoid:P16989 KO:K06099 OMA:ENQQATS
OrthoDB:EOG46DM3W PhylomeDB:P16989 ChiTaRS:CSDA GenomeRNAi:8531
NextBio:31948 PMAP-CutDB:P16989 Bgee:P16989 CleanEx:HS_CSDA
Genevestigator:P16989 GermOnline:ENSG00000060138 GO:GO:0048642
Uniprot:P16989
Length = 372
Score = 229 (85.7 bits), Expect = 7.3e-19, P = 7.3e-19
Identities = 48/120 (40%), Positives = 76/120 (63%)
Query: 72 AINVTG-PNG--IPVQGAPKSSSETVSGTYRNDSFFPAVHT-VRGIVKFYDSKRGFGFIT 127
A +V G P G P +++ + D+ + T V G VK+++ + G+GFI
Sbjct: 49 AAHVAGNPGGDAAPAATGTAAAASLATAAGSEDAEKKVLATKVLGTVKWFNVRNGYGFIN 108
Query: 128 RLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGA 187
R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K EA NVTGP+G+PV+G+
Sbjct: 109 RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGS 168
Score = 227 (85.0 bits), Expect = 1.2e-18, P = 1.2e-18
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 91 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 150
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G+PV+G+
Sbjct: 151 GAEAANVTGPDGVPVEGS 168
>UNIPROTKB|E9PTV8 [details] [associations]
symbol:E9PTV8 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 GeneTree:ENSGT00390000009256 IPI:IPI00551815
OMA:EGNESAP PRIDE:E9PTV8 Ensembl:ENSRNOT00000015875
ArrayExpress:E9PTV8 Uniprot:E9PTV8
Length = 326
Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V++++ G+K
Sbjct: 57 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEYDVVEGEK 116
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 117 GAEAANVTGPGGVPVQGS 134
Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V++++ G+K
Sbjct: 57 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEYDVVEGEK 116
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 117 GAEAANVTGPGGVPVQGS 134
>UNIPROTKB|F1LY12 [details] [associations]
symbol:F1LY12 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 IPI:IPI00780136 Ensembl:ENSRNOT00000030974
ArrayExpress:F1LY12 Uniprot:F1LY12
Length = 292
Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V++++ G+K
Sbjct: 27 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEYDVVEGEK 86
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 87 GAEAANVTGPGGVPVQGS 104
Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V++++ G+K
Sbjct: 27 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEYDVVEGEK 86
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 87 GAEAANVTGPGGVPVQGS 104
>MGI|MGI:1096372 [details] [associations]
symbol:Ybx2 "Y box protein 2" species:10090 "Mus musculus"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO;IDA] [GO:0005844 "polysome" evidence=IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007286 "spermatid development" evidence=IMP]
[GO:0008289 "lipid binding" evidence=IDA] [GO:0017148 "negative
regulation of translation" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0043021
"ribonucleoprotein complex binding" evidence=IDA] [GO:0045182
"translation regulator activity" evidence=IDA] [GO:0048255 "mRNA
stabilization" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP]
[GO:0051100 "negative regulation of binding" evidence=IMP]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 MGI:MGI:1096372 GO:GO:0005634
GO:GO:0005737 GO:GO:0006355 GO:GO:0007286 GO:GO:0017148
GO:GO:0003677 GO:GO:0048477 GO:GO:0003682 GO:GO:0045182
GO:GO:0048255 EMBL:AL596185 GO:GO:0008289 GO:GO:0003730
GO:GO:0005844 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0043021 InterPro:IPR019844 GO:GO:0051100 eggNOG:COG1278
HOGENOM:HOG000116439 OrthoDB:EOG46DM3W GeneTree:ENSGT00390000009256
CTD:51087 HOVERGEN:HBG079361 KO:K09277 ChiTaRS:YBX2 EMBL:AF073954
EMBL:AF073955 IPI:IPI00131034 IPI:IPI00553286 RefSeq:NP_058571.2
UniGene:Mm.29286 ProteinModelPortal:Q9Z2C8 SMR:Q9Z2C8
DIP:DIP-59783N STRING:Q9Z2C8 PhosphoSite:Q9Z2C8
REPRODUCTION-2DPAGE:Q9Z2C8 PaxDb:Q9Z2C8 PRIDE:Q9Z2C8
Ensembl:ENSMUST00000108601 GeneID:53422 KEGG:mmu:53422
InParanoid:Q9Z2C8 NextBio:310261 Bgee:Q9Z2C8 CleanEx:MM_YBX2
Genevestigator:Q9Z2C8 GermOnline:ENSMUSG00000018554 Uniprot:Q9Z2C8
Length = 360
Score = 226 (84.6 bits), Expect = 1.3e-18, P = 1.3e-18
Identities = 48/119 (40%), Positives = 73/119 (61%)
Query: 78 PNGIPVQGAPKSSSETVSGT----YRNDSFFPAVHT-VRGIVKFYDSKRGFGFITRLDNK 132
P P P + + SGT R+ + P + V G VK+++ + G+GFI R D K
Sbjct: 59 PLHAPGPRTPGNQATAASGTPAPPARSQADKPVLAIQVLGTVKWFNVRNGYGFINRNDTK 118
Query: 133 EDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGAPKVP 191
ED+FVH+++I + NP+KF +S+G GE V+F++ G+K A NVTGP G+PV+G+ P
Sbjct: 119 EDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGARAANVTGPGGVPVKGSRYAP 177
Score = 220 (82.5 bits), Expect = 6.6e-18, P = 6.6e-18
Identities = 39/78 (50%), Positives = 59/78 (75%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I + NP+KF +S+G GE V+F++ G+K
Sbjct: 96 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEK 155
Query: 69 DIEAINVTGPNGIPVQGA 86
A NVTGP G+PV+G+
Sbjct: 156 GARAANVTGPGGVPVKGS 173
>UNIPROTKB|J9NTJ7 [details] [associations]
symbol:LOC474472 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 GeneTree:ENSGT00390000009256 EMBL:AAEX03026560
Ensembl:ENSCAFT00000027380 OMA:ARKEDTH Uniprot:J9NTJ7
Length = 322
Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K +P+K+ +S+G GE V+F++ G+K
Sbjct: 57 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNHPRKYLRSVGDGETVEFDVVEGEK 116
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 117 GAEAANVTGPGGVPVQGS 134
Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R D KED+FVH+++I K +P+K+ +S+G GE V+F++ G+K
Sbjct: 57 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNHPRKYLRSVGDGETVEFDVVEGEK 116
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 117 GAEAANVTGPGGVPVQGS 134
>UNIPROTKB|F1M0E9 [details] [associations]
symbol:F1M0E9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 GeneTree:ENSGT00390000009256 EMBL:AC118318
IPI:IPI00781417 Ensembl:ENSRNOT00000011205 Uniprot:F1M0E9
Length = 311
Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
Identities = 45/101 (44%), Positives = 64/101 (63%)
Query: 87 PKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMN 146
P+S+ S + V G VKF + + G+GFI R D KED+FVH+++I K N
Sbjct: 25 PRSTGSLTSAAPASGDKKVIATKVLGTVKF-NVRNGYGFINRNDTKEDVFVHQTAIKKNN 83
Query: 147 PKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGA 187
P K+ +S+G GE V+F++ G+K EA NVTGP G+PVQG+
Sbjct: 84 PSKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGS 124
Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
Identities = 42/78 (53%), Positives = 58/78 (74%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VKF + + G+GFI R D KED+FVH+++I K NP K+ +S+G GE V+F++ G+K
Sbjct: 48 VLGTVKF-NVRNGYGFINRNDTKEDVFVHQTAIKKNNPSKYLRSVGDGETVEFDVVEGEK 106
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 107 GAEAANVTGPGGVPVQGS 124
>UNIPROTKB|E1C9B8 [details] [associations]
symbol:E1C9B8 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 GO:GO:0006355 GO:GO:0003677 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GeneTree:ENSGT00390000009256
EMBL:AADN02037767 EMBL:AADN02037762 EMBL:AADN02037763
EMBL:AADN02037764 EMBL:AADN02037765 EMBL:AADN02037766
IPI:IPI00588677 Ensembl:ENSGALT00000029277 OMA:EHAGIIV
ArrayExpress:E1C9B8 Uniprot:E1C9B8
Length = 295
Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
Identities = 47/114 (41%), Positives = 76/114 (66%)
Query: 77 GPNGIPVQGAPK-SSSETVSGTYRNDSFFPAVHT-VRGIVKFYDSKRGFGFI-TRLDNKE 133
G +G V A S++ T + ++ + T V G VK+++ + G+GFI +R D KE
Sbjct: 47 GASGGEVAPAASGSAATTTAAAAAGETEKKVLATKVLGTVKWFNVRNGYGFINSRNDTKE 106
Query: 134 DIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGA 187
D+FVH+++I K NP+K+ +S+G GE V+F++ G+K EA NVTGP+G+PV+G+
Sbjct: 107 DVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGS 160
Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
Identities = 40/79 (50%), Positives = 62/79 (78%)
Query: 9 VRGIVKFYDSKRGFGFI-TRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGK 67
V G VK+++ + G+GFI +R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+
Sbjct: 82 VLGTVKWFNVRNGYGFINSRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 141
Query: 68 KDIEAINVTGPNGIPVQGA 86
K EA NVTGP+G+PV+G+
Sbjct: 142 KGAEAANVTGPDGVPVEGS 160
>UNIPROTKB|F1PF53 [details] [associations]
symbol:F1PF53 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 GeneTree:ENSGT00390000009256 EMBL:AAEX03026423
EMBL:AAEX03026424 Ensembl:ENSCAFT00000026168 OMA:ERESDWQ
Uniprot:F1PF53
Length = 231
Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
VRG VK+++ K G+GFI+R D +ED+FVH+++I + NP K+ +S+G GE V+F++ G++
Sbjct: 17 VRGSVKWFNVKNGYGFISRHDTQEDVFVHQTAITRNNPHKYQRSVGDGETVEFDVVQGER 76
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G PVQG+
Sbjct: 77 GTEAANVTGPAGAPVQGS 94
Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
VRG VK+++ K G+GFI+R D +ED+FVH+++I + NP K+ +S+G GE V+F++ G++
Sbjct: 17 VRGSVKWFNVKNGYGFISRHDTQEDVFVHQTAITRNNPHKYQRSVGDGETVEFDVVQGER 76
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G PVQG+
Sbjct: 77 GTEAANVTGPAGAPVQGS 94
>UNIPROTKB|F1PF55 [details] [associations]
symbol:F1PF55 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 GeneTree:ENSGT00390000009256 EMBL:AAEX03026423
EMBL:AAEX03026424 Ensembl:ENSCAFT00000026166 Uniprot:F1PF55
Length = 216
Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
VRG VK+++ K G+GFI+R D +ED+FVH+++I + NP K+ +S+G GE V+F++ G++
Sbjct: 31 VRGSVKWFNVKNGYGFISRHDTQEDVFVHQTAITRNNPHKYQRSVGDGETVEFDVVQGER 90
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G PVQG+
Sbjct: 91 GTEAANVTGPAGAPVQGS 108
Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
VRG VK+++ K G+GFI+R D +ED+FVH+++I + NP K+ +S+G GE V+F++ G++
Sbjct: 31 VRGSVKWFNVKNGYGFISRHDTQEDVFVHQTAITRNNPHKYQRSVGDGETVEFDVVQGER 90
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G PVQG+
Sbjct: 91 GTEAANVTGPAGAPVQGS 108
>UNIPROTKB|J9NYZ2 [details] [associations]
symbol:J9NYZ2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 GeneTree:ENSGT00390000009256 EMBL:AAEX03026423
OMA:GGPQDQR Ensembl:ENSCAFT00000048266 Uniprot:J9NYZ2
Length = 316
Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
VRG VK+++ K G+GFI+R D +ED+FVH+++I + NP K+ +S+G GE V+F++ G++
Sbjct: 69 VRGSVKWFNVKNGYGFISRHDTQEDVFVHQTAITRNNPHKYQRSVGDGETVEFDVVQGER 128
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G PVQG+
Sbjct: 129 GTEAANVTGPAGAPVQGS 146
Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
VRG VK+++ K G+GFI+R D +ED+FVH+++I + NP K+ +S+G GE V+F++ G++
Sbjct: 69 VRGSVKWFNVKNGYGFISRHDTQEDVFVHQTAITRNNPHKYQRSVGDGETVEFDVVQGER 128
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G PVQG+
Sbjct: 129 GTEAANVTGPAGAPVQGS 146
>UNIPROTKB|J9P9A0 [details] [associations]
symbol:J9P9A0 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 GeneTree:ENSGT00390000009256 EMBL:AAEX03001199
OMA:QPREDSK Ensembl:ENSCAFT00000048533 Uniprot:J9P9A0
Length = 257
Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
Identities = 38/78 (48%), Positives = 60/78 (76%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GF+ R D+KED+F H+++I K +P+K+ +S+G GE V+F++ G+K
Sbjct: 48 VLGTVKWFNVRNGYGFLNRNDSKEDVFAHQTAIKKNHPRKYLRSVGDGETVEFDVVEGEK 107
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 108 GAEAANVTGPGGVPVQGS 125
Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
Identities = 38/78 (48%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GF+ R D+KED+F H+++I K +P+K+ +S+G GE V+F++ G+K
Sbjct: 48 VLGTVKWFNVRNGYGFLNRNDSKEDVFAHQTAIKKNHPRKYLRSVGDGETVEFDVVEGEK 107
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 108 GAEAANVTGPGGVPVQGS 125
>UNIPROTKB|F1RWB7 [details] [associations]
symbol:F1RWB7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071204 "histone pre-mRNA 3'end processing complex"
evidence=IEA] [GO:0070937 "CRD-mediated mRNA stability complex"
evidence=IEA] [GO:0070934 "CRD-mediated mRNA stabilization"
evidence=IEA] [GO:0051154 "negative regulation of striated muscle
cell differentiation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IEA] InterPro:IPR002059
InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 GO:GO:0006355 GO:GO:0003677 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR019844
GeneTree:ENSGT00390000009256 EMBL:CU693419
Ensembl:ENSSSCT00000009700 OMA:QPREDSK Uniprot:F1RWB7
Length = 302
Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
Identities = 49/118 (41%), Positives = 71/118 (60%)
Query: 72 AINVTGPNGIPV-QGAPKSSSETVSGTYRNDS-FFPAVHTVRGIVKFYDSKRGFGFITRL 129
A+ P G V QG T + D F A V G VK+++ + G+GFI R
Sbjct: 25 ALPTPSPAGPAVAQGVAAPGGLTSAAPAGGDKKVFAA--KVLGTVKWFNVRNGYGFINRN 82
Query: 130 DNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGA 187
D KED+FVH+++I K NP+K+ +S+G GEIV+F++ G++ EA N TGP G+ VQG+
Sbjct: 83 DTKEDVFVHQTAIKKNNPRKYLRSVGDGEIVEFDVVEGEESAEAANFTGPGGVGVQGS 140
Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
Identities = 39/78 (50%), Positives = 59/78 (75%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R D KED+FVH+++I K NP+K+ +S+G GEIV+F++ G++
Sbjct: 63 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGEIVEFDVVEGEE 122
Query: 69 DIEAINVTGPNGIPVQGA 86
EA N TGP G+ VQG+
Sbjct: 123 SAEAANFTGPGGVGVQGS 140
>FB|FBgn0022959 [details] [associations]
symbol:yps "ypsilon schachtel" species:7227 "Drosophila
melanogaster" [GO:0005634 "nucleus" evidence=ISS] [GO:0003676
"nucleic acid binding" evidence=ISS] [GO:0003729 "mRNA binding"
evidence=TAS] [GO:0048477 "oogenesis" evidence=NAS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IC] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0006355
GO:GO:0003677 GO:GO:0003729 GO:GO:0048477 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0071011 GO:GO:0000398
GO:GO:0071013 InterPro:IPR019844 HSSP:O54310 EMBL:U49120
ProteinModelPortal:O46173 SMR:O46173 IntAct:O46173 STRING:O46173
PaxDb:O46173 PRIDE:O46173 FlyBase:FBgn0022959 eggNOG:NOG317970
InParanoid:O46173 OrthoDB:EOG4MPG6H ChiTaRS:yps ArrayExpress:O46173
Bgee:O46173 Uniprot:O46173
Length = 359
Score = 220 (82.5 bits), Expect = 6.5e-18, P = 6.5e-18
Identities = 45/86 (52%), Positives = 64/86 (74%)
Query: 2 TKFEIHT-VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVD 60
TK I T V G VK+++ K G+GFI R D +ED+FVH+S+I NPKK +S+G GE+V+
Sbjct: 55 TKEVIATKVTGTVKWFNVKSGYGFINRNDTREDVFVHQSAIAN-NPKKAVRSVGDGEVVE 113
Query: 61 FNIGVGKKDIEAINVTGPNGIPVQGA 86
F++ +G+K EA NVTGP+G PV+G+
Sbjct: 114 FDVVIGEKGNEAANVTGPSGEPVRGS 139
Score = 217 (81.4 bits), Expect = 1.4e-17, P = 1.4e-17
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ K G+GFI R D +ED+FVH+S+I NPKK +S+G GE+V+F++ +G+K
Sbjct: 63 VTGTVKWFNVKSGYGFINRNDTREDVFVHQSAIAN-NPKKAVRSVGDGEVVEFDVVIGEK 121
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G PV+G+
Sbjct: 122 GNEAANVTGPSGEPVRGS 139
>WB|WBGene00000472 [details] [associations]
symbol:cey-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
evidence=IDA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 eggNOG:COG1278 OMA:CFKCGEP EMBL:Z81525
GeneTree:ENSGT00390000009256 HSSP:P41016 PIR:T21689
RefSeq:NP_496366.1 ProteinModelPortal:O62213 SMR:O62213
DIP:DIP-26200N IntAct:O62213 MINT:MINT-1068354 STRING:O62213
PaxDb:O62213 EnsemblMetazoa:F33A8.3.1 EnsemblMetazoa:F33A8.3.2
GeneID:174690 KEGG:cel:CELE_F33A8.3 CTD:174690 WormBase:F33A8.3
HOGENOM:HOG000016800 InParanoid:O62213 NextBio:885082
Uniprot:O62213
Length = 208
Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
Identities = 42/91 (46%), Positives = 60/91 (65%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V+G VK+++ K G+GFI R D EDIFVH+++I+ NP K+ +SLG E V F+I G K
Sbjct: 21 VKGTVKWFNVKNGYGFINRTDTNEDIFVHQTAIINNNPNKYLRSLGDNEEVMFDIVEGSK 80
Query: 69 DIEAINVTGPNGIPVQGAPKSSSETVSGTYR 99
+EA +VTGP+G PVQG+ ++ R
Sbjct: 81 GLEAASVTGPDGGPVQGSKYAADRDAENAAR 111
Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 41/78 (52%), Positives = 57/78 (73%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V+G VK+++ K G+GFI R D EDIFVH+++I+ NP K+ +SLG E V F+I G K
Sbjct: 21 VKGTVKWFNVKNGYGFINRTDTNEDIFVHQTAIINNNPNKYLRSLGDNEEVMFDIVEGSK 80
Query: 170 DIEAINVTGPNGIPVQGA 187
+EA +VTGP+G PVQG+
Sbjct: 81 GLEAASVTGPDGGPVQGS 98
>UNIPROTKB|F1NMZ8 [details] [associations]
symbol:YBX1 "Nuclease-sensitive element-binding protein 1"
species:9031 "Gallus gallus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0001701 "in utero embryonic development" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA] [GO:0005689
"U12-type spliceosomal complex" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0051154 "negative
regulation of striated muscle cell differentiation" evidence=IEA]
[GO:0070934 "CRD-mediated mRNA stabilization" evidence=IEA]
[GO:0070937 "CRD-mediated mRNA stability complex" evidence=IEA]
[GO:0071204 "histone pre-mRNA 3'end processing complex"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0000122
GO:GO:0003697 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0010494 InterPro:IPR019844 GeneTree:ENSGT00390000009256
GO:GO:0005689 GO:GO:0070937 GO:GO:0070934 GO:GO:0071204
GO:GO:0051154 OMA:VEGADNQ EMBL:AADN02073477 IPI:IPI00683264
Ensembl:ENSGALT00000039185 ArrayExpress:F1NMZ8 Uniprot:F1NMZ8
Length = 288
Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
Identities = 37/68 (54%), Positives = 53/68 (77%)
Query: 19 KRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGP 78
+ G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K EA NVTGP
Sbjct: 12 RNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGP 71
Query: 79 NGIPVQGA 86
G+PVQG+
Sbjct: 72 GGVPVQGS 79
Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
Identities = 37/68 (54%), Positives = 53/68 (77%)
Query: 120 KRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGP 179
+ G+GFI R D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K EA NVTGP
Sbjct: 12 RNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGP 71
Query: 180 NGIPVQGA 187
G+PVQG+
Sbjct: 72 GGVPVQGS 79
>UNIPROTKB|F1S319 [details] [associations]
symbol:F1S319 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 GO:GO:0006355 GO:GO:0003677 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GeneTree:ENSGT00390000009256
EMBL:CU914460 Ensembl:ENSSSCT00000016681 Uniprot:F1S319
Length = 238
Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 38/84 (45%), Positives = 57/84 (67%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+ + G+GFI D KED+FV++++I NP+K+ S+G GE +F++ G+K
Sbjct: 43 VLGTVKWLSVRNGYGFINGNDTKEDVFVYQTAIKNNNPRKYLHSIGDGETAEFDVVEGEK 102
Query: 69 DIEAINVTGPNGIPVQGAPKSSSE 92
EA NVTGP G+ VQG+ K ++E
Sbjct: 103 GAEAANVTGPGGV-VQGS-KYAAE 124
Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 36/78 (46%), Positives = 53/78 (67%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+ + G+GFI D KED+FV++++I NP+K+ S+G GE +F++ G+K
Sbjct: 43 VLGTVKWLSVRNGYGFINGNDTKEDVFVYQTAIKNNNPRKYLHSIGDGETAEFDVVEGEK 102
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G+ VQG+
Sbjct: 103 GAEAANVTGPGGV-VQGS 119
>UNIPROTKB|F1NA94 [details] [associations]
symbol:F1NA94 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 GO:GO:0006355 GO:GO:0003677 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GeneTree:ENSGT00390000009256
EMBL:AADN02037767 EMBL:AADN02037762 EMBL:AADN02037763
EMBL:AADN02037764 EMBL:AADN02037765 EMBL:AADN02037766
IPI:IPI00581805 Ensembl:ENSGALT00000023812 ArrayExpress:F1NA94
Uniprot:F1NA94
Length = 214
Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
Identities = 33/78 (42%), Positives = 55/78 (70%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ + G+GFI R + + + ++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 4 VLGTVKWFNVRNGYGFINRYVARHSVNLDPTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 63
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP+G+PV+G+
Sbjct: 64 GAEAANVTGPDGVPVEGS 81
Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
Identities = 33/78 (42%), Positives = 55/78 (70%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ + G+GFI R + + + ++I K NP+K+ +S+G GE V+F++ G+K
Sbjct: 4 VLGTVKWFNVRNGYGFINRYVARHSVNLDPTAIKKNNPRKYLRSVGDGETVEFDVVEGEK 63
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP+G+PV+G+
Sbjct: 64 GAEAANVTGPDGVPVEGS 81
>UNIPROTKB|I3LFV4 [details] [associations]
symbol:YBX1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 GO:GO:0001701 GO:GO:0000122 GO:GO:0003697
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0010494
GeneTree:ENSGT00390000009256 GO:GO:0005689 GO:GO:0070937
GO:GO:0070934 GO:GO:0071204 GO:GO:0051154 OMA:VEGADNQ EMBL:CU929642
EMBL:CU467721 Ensembl:ENSSSCT00000026666 Uniprot:I3LFV4
Length = 324
Score = 182 (69.1 bits), Expect = 8.8e-14, P = 8.8e-14
Identities = 43/112 (38%), Positives = 64/112 (57%)
Query: 77 GPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFITRL-DNKEDI 135
GP G+ AP + V G + ++ F +K F +L D KED+
Sbjct: 38 GPGGL-TSAAPAGGDKKVIGN----------KILESMIWFLQNK--FDAYLKLNDTKEDV 84
Query: 136 FVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGA 187
FVH+++I K NP+K+ +S+G GE V+F++ G+K EA NVTGP G+PVQG+
Sbjct: 85 FVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGS 136
Score = 181 (68.8 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 32/58 (55%), Positives = 46/58 (79%)
Query: 29 DNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGA 86
D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K EA NVTGP G+PVQG+
Sbjct: 79 DTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGS 136
>UNIPROTKB|J9PBG2 [details] [associations]
symbol:J9PBG2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR002059 Pfam:PF00313 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GeneTree:ENSGT00390000009256 EMBL:AAEX03013739
Ensembl:ENSCAFT00000008316 OMA:PPHNILE Uniprot:J9PBG2
Length = 271
Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 33/75 (44%), Positives = 53/75 (70%)
Query: 117 YDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINV 176
++ + +GFI R D KE +FVH+++I + NP+KF +S+G G+ V+F++ G+K EA NV
Sbjct: 1 FNVQNHYGFINRNDTKECVFVHQTAIKRSNPRKFLRSVGDGD-VEFDVVEGEKGAEAANV 59
Query: 177 TGPNGIPVQGAPKVP 191
GP G+PV+G+ P
Sbjct: 60 PGPGGVPVKGSSYAP 74
Score = 174 (66.3 bits), Expect = 2.8e-13, P = 2.8e-13
Identities = 32/71 (45%), Positives = 52/71 (73%)
Query: 16 YDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINV 75
++ + +GFI R D KE +FVH+++I + NP+KF +S+G G+ V+F++ G+K EA NV
Sbjct: 1 FNVQNHYGFINRNDTKECVFVHQTAIKRSNPRKFLRSVGDGD-VEFDVVEGEKGAEAANV 59
Query: 76 TGPNGIPVQGA 86
GP G+PV+G+
Sbjct: 60 PGPGGVPVKGS 70
>UNIPROTKB|F1PZ69 [details] [associations]
symbol:F1PZ69 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 GO:GO:0006355 GO:GO:0003677
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GeneTree:ENSGT00390000009256 EMBL:AAEX03013316
Ensembl:ENSCAFT00000008808 Uniprot:F1PZ69
Length = 306
Score = 179 (68.1 bits), Expect = 1.5e-13, P = 1.5e-13
Identities = 36/79 (45%), Positives = 53/79 (67%)
Query: 9 VRGIVKFYDSKRG-FGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGK 67
V G VK++ + G +G I R D KED F H+++I K NP+K+ S+G G+ V+F++ G+
Sbjct: 51 VLGTVKWFSVRNGGYGLINRNDTKEDAFAHQTAIKKNNPRKYLCSVGDGDTVEFDVAEGE 110
Query: 68 KDIEAINVTGPNGIPVQGA 86
K EA V GP G+PVQG+
Sbjct: 111 KGAEAAPV-GPGGVPVQGS 128
Score = 179 (68.1 bits), Expect = 1.5e-13, P = 1.5e-13
Identities = 36/79 (45%), Positives = 53/79 (67%)
Query: 110 VRGIVKFYDSKRG-FGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGK 168
V G VK++ + G +G I R D KED F H+++I K NP+K+ S+G G+ V+F++ G+
Sbjct: 51 VLGTVKWFSVRNGGYGLINRNDTKEDAFAHQTAIKKNNPRKYLCSVGDGDTVEFDVAEGE 110
Query: 169 KDIEAINVTGPNGIPVQGA 187
K EA V GP G+PVQG+
Sbjct: 111 KGAEAAPV-GPGGVPVQGS 128
>UNIPROTKB|G3N0T3 [details] [associations]
symbol:G3N0T3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0006355 GO:GO:0003677
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 GeneTree:ENSGT00390000009256 EMBL:DAAA02073368
Ensembl:ENSBTAT00000064453 OMA:GGPQDQR Uniprot:G3N0T3
Length = 239
Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 34/78 (43%), Positives = 53/78 (67%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G V ++ K+G+GFI+R D +ED+FVH ++I NP + S+ GE+V+F++ G+
Sbjct: 25 VLGTVVWFKEKKGYGFISRQDTQEDVFVHHTAITGKNPCTYRGSVDDGEMVEFDVVQGEW 84
Query: 69 DIEAINVTGPNGIPVQGA 86
EA NVTGP G P++G+
Sbjct: 85 GTEAANVTGPAGAPLKGS 102
Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 34/78 (43%), Positives = 53/78 (67%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G V ++ K+G+GFI+R D +ED+FVH ++I NP + S+ GE+V+F++ G+
Sbjct: 25 VLGTVVWFKEKKGYGFISRQDTQEDVFVHHTAITGKNPCTYRGSVDDGEMVEFDVVQGEW 84
Query: 170 DIEAINVTGPNGIPVQGA 187
EA NVTGP G P++G+
Sbjct: 85 GTEAANVTGPAGAPLKGS 102
>UNIPROTKB|H0Y449 [details] [associations]
symbol:YBX1 "Nuclease-sensitive element-binding protein 1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0043231
"intracellular membrane-bounded organelle" evidence=IDA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 GO:GO:0043231 GO:GO:0005737 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
EMBL:AC098484 HGNC:HGNC:8014 ProteinModelPortal:H0Y449 PRIDE:H0Y449
Ensembl:ENST00000436427 Uniprot:H0Y449
Length = 374
Score = 181 (68.8 bits), Expect = 1.9e-13, P = 1.9e-13
Identities = 32/58 (55%), Positives = 46/58 (79%)
Query: 29 DNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGA 86
D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K EA NVTGP G+PVQG+
Sbjct: 129 DTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGS 186
Score = 181 (68.8 bits), Expect = 1.9e-13, P = 1.9e-13
Identities = 32/58 (55%), Positives = 46/58 (79%)
Query: 130 DNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGA 187
D KED+FVH+++I K NP+K+ +S+G GE V+F++ G+K EA NVTGP G+PVQG+
Sbjct: 129 DTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGS 186
>UNIPROTKB|G3X6E4 [details] [associations]
symbol:G3X6E4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0006355 GO:GO:0003677
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 GeneTree:ENSGT00390000009256 OMA:ERESDWQ
EMBL:DAAA02073461 Ensembl:ENSBTAT00000005429 Uniprot:G3X6E4
Length = 245
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 37/103 (35%), Positives = 59/103 (57%)
Query: 85 GAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVK 144
G PK+++ G V G V ++ K+G+GFI R D +ED+FVH ++I
Sbjct: 22 GIPKTTTRGAKGKAPKKVI---AKRVLGTVVWFKDKKGYGFIRRHDTQEDVFVHHTAITG 78
Query: 145 MNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGA 187
P K+ S+ GE V+F++ G++ EA VTGP G+P++G+
Sbjct: 79 ETPCKYRGSVDDGETVEFDVVQGERGTEAAKVTGPAGVPLKGS 121
Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 33/78 (42%), Positives = 52/78 (66%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G V ++ K+G+GFI R D +ED+FVH ++I P K+ S+ GE V+F++ G++
Sbjct: 44 VLGTVVWFKDKKGYGFIRRHDTQEDVFVHHTAITGETPCKYRGSVDDGETVEFDVVQGER 103
Query: 69 DIEAINVTGPNGIPVQGA 86
EA VTGP G+P++G+
Sbjct: 104 GTEAAKVTGPAGVPLKGS 121
>RGD|2324048 [details] [associations]
symbol:LOC100366210 "Y box binding protein 1-like" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR002059 Pfam:PF00313 PRINTS:PR00050
RGD:2324048 GO:GO:0006355 GO:GO:0003677 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 IPI:IPI00779316
Ensembl:ENSRNOT00000061547 OMA:SAVACRD Uniprot:F1LX40
Length = 292
Score = 170 (64.9 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 34/76 (44%), Positives = 51/76 (67%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G +K G G I R D KED+FVH++++ K +P+K+ +S+G E V+F+ G+K
Sbjct: 31 VLGTMKCSIVWNGCGLINRNDTKEDVFVHQTAMKKNDPRKYLRSVGDAETVEFDFVEGEK 90
Query: 69 DIEAINVTGPNGIPVQ 84
D+EA +VTG G+PVQ
Sbjct: 91 DVEAASVTGLGGVPVQ 106
Score = 170 (64.9 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 34/76 (44%), Positives = 51/76 (67%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G +K G G I R D KED+FVH++++ K +P+K+ +S+G E V+F+ G+K
Sbjct: 31 VLGTMKCSIVWNGCGLINRNDTKEDVFVHQTAMKKNDPRKYLRSVGDAETVEFDFVEGEK 90
Query: 170 DIEAINVTGPNGIPVQ 185
D+EA +VTG G+PVQ
Sbjct: 91 DVEAASVTGLGGVPVQ 106
>UNIPROTKB|F1M1T6 [details] [associations]
symbol:F1M1T6 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
SMART:SM00357 GO:GO:0006355 GO:GO:0003677 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 IPI:IPI00560842
Ensembl:ENSRNOT00000031766 ArrayExpress:F1M1T6 Uniprot:F1M1T6
Length = 309
Score = 168 (64.2 bits), Expect = 2.8e-12, P = 2.8e-12
Identities = 36/97 (37%), Positives = 59/97 (60%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G +K+++ + GF I R D KED+FVH++++ K NP+K + +G GE F++ G+K
Sbjct: 60 VLGTIKWFNERNGF--INRNDTKEDVFVHQTAVKKKNPRKNLRRVGDGE-TGFDVVEGEK 116
Query: 69 DIEAINVTGPNGIPVQG----APKSSSETVSGTYRND 101
E +VT P G+PVQG A ++ G Y+++
Sbjct: 117 GAEVASVTDPGGVPVQGGKGAADRNHYRRYPGNYQHN 153
Score = 167 (63.8 bits), Expect = 3.6e-12, P = 3.6e-12
Identities = 33/77 (42%), Positives = 51/77 (66%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G +K+++ + GF I R D KED+FVH++++ K NP+K + +G GE F++ G+K
Sbjct: 60 VLGTIKWFNERNGF--INRNDTKEDVFVHQTAVKKKNPRKNLRRVGDGE-TGFDVVEGEK 116
Query: 170 DIEAINVTGPNGIPVQG 186
E +VT P G+PVQG
Sbjct: 117 GAEVASVTDPGGVPVQG 133
>WB|WBGene00000473 [details] [associations]
symbol:cey-2 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00313 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
GO:GO:0006355 GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR019844 eggNOG:COG1278
GeneTree:ENSGT00390000009256 EMBL:FO081396 HSSP:P41016 PIR:T25767
RefSeq:NP_491645.1 ProteinModelPortal:P91306 SMR:P91306
DIP:DIP-26178N IntAct:P91306 MINT:MINT-1083994 STRING:P91306
PaxDb:P91306 EnsemblMetazoa:F46F11.2.1 EnsemblMetazoa:F46F11.2.2
GeneID:172219 KEGG:cel:CELE_F46F11.2 UCSC:F46F11.2.1 CTD:172219
WormBase:F46F11.2 HOGENOM:HOG000016644 InParanoid:P91306
OMA:VERIRIW NextBio:874555 Uniprot:P91306
Length = 267
Score = 165 (63.1 bits), Expect = 3.1e-12, P = 3.1e-12
Identities = 39/84 (46%), Positives = 57/84 (67%)
Query: 106 AVHT-VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFF-QSLGLGEIVDFN 163
A+ T ++G VK+Y R +GFI+R D ++DIFVH+++I K +KF+ ++LG E V F+
Sbjct: 61 AITTGLQGKVKWYSVLRRYGFISRNDGEKDIFVHQTAIAKSATEKFYLRTLGDDEEVLFD 120
Query: 164 IGVGKKDIEAINVTGPNGIPVQGA 187
+ GK EA NVTGPNG V G+
Sbjct: 121 LVEGKNGPEAANVTGPNGDNVIGS 144
Score = 165 (63.1 bits), Expect = 3.1e-12, P = 3.1e-12
Identities = 40/87 (45%), Positives = 58/87 (66%)
Query: 2 TKFEIHT-VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFF-QSLGLGEIV 59
+K I T ++G VK+Y R +GFI+R D ++DIFVH+++I K +KF+ ++LG E V
Sbjct: 58 SKTAITTGLQGKVKWYSVLRRYGFISRNDGEKDIFVHQTAIAKSATEKFYLRTLGDDEEV 117
Query: 60 DFNIGVGKKDIEAINVTGPNGIPVQGA 86
F++ GK EA NVTGPNG V G+
Sbjct: 118 LFDLVEGKNGPEAANVTGPNGDNVIGS 144
>UNIPROTKB|F1RZ18 [details] [associations]
symbol:F1RZ18 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 GO:GO:0006355 GO:GO:0003677 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GeneTree:ENSGT00390000009256
EMBL:FP102825 Ensembl:ENSSSCT00000014024 Uniprot:F1RZ18
Length = 302
Score = 165 (63.1 bits), Expect = 5.7e-12, P = 5.7e-12
Identities = 35/72 (48%), Positives = 50/72 (69%)
Query: 13 VKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEA 72
VK+Y+ + G+GF R D K+ IFVH+++I K NP+K+ S+ GE V+F+I G+K A
Sbjct: 56 VKWYNVRNGYGF-NRNDTKKYIFVHQTAIKKNNPRKYLHSVEDGETVEFDIVEGEKG-RA 113
Query: 73 INVTGPNGIPVQ 84
NVTGP G+ VQ
Sbjct: 114 ANVTGPGGVSVQ 125
Score = 165 (63.1 bits), Expect = 5.7e-12, P = 5.7e-12
Identities = 35/72 (48%), Positives = 50/72 (69%)
Query: 114 VKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEA 173
VK+Y+ + G+GF R D K+ IFVH+++I K NP+K+ S+ GE V+F+I G+K A
Sbjct: 56 VKWYNVRNGYGF-NRNDTKKYIFVHQTAIKKNNPRKYLHSVEDGETVEFDIVEGEKG-RA 113
Query: 174 INVTGPNGIPVQ 185
NVTGP G+ VQ
Sbjct: 114 ANVTGPGGVSVQ 125
>TAIR|locus:2047092 [details] [associations]
symbol:GRP2B "glycine-rich protein 2B" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009409 "response
to cold" evidence=IEP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009790 "embryo
development" evidence=IMP] [GO:0010154 "fruit development"
evidence=IMP] InterPro:IPR001878 InterPro:IPR002059
InterPro:IPR011129 Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050
PROSITE:PS50158 SMART:SM00343 SMART:SM00357 Prosite:PS00352
GO:GO:0005829 GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0005730 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0009409 GO:GO:0008270 GO:GO:0003723 GO:GO:0009790
GO:GO:0010154 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
Gene3D:4.10.60.10 SUPFAM:SSF57756 HOGENOM:HOG000186262
InterPro:IPR019844 EMBL:AC006264 eggNOG:COG1278
ProtClustDB:CLSN2683565 EMBL:U39072 EMBL:AY057693 EMBL:BT021142
IPI:IPI00516457 PIR:F84596 RefSeq:NP_179702.1 UniGene:At.1680
ProteinModelPortal:Q38896 SMR:Q38896 PaxDb:Q38896 PRIDE:Q38896
EnsemblPlants:AT2G21060.1 GeneID:816641 KEGG:ath:AT2G21060
TAIR:At2g21060 InParanoid:Q38896 OMA:CFKCGEP PhylomeDB:Q38896
Genevestigator:Q38896 GermOnline:AT2G21060 Uniprot:Q38896
Length = 201
Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 35/77 (45%), Positives = 52/77 (67%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 69
+G VK++D+++GFGFIT D +D+FVH+SSI + F+SL E V+F++ V
Sbjct: 16 KGTVKWFDTQKGFGFITPSDGGDDLFVHQSSI----RSEGFRSLAAEESVEFDVEVDNSG 71
Query: 70 I-EAINVTGPNGIPVQG 85
+AI V+GP+G PVQG
Sbjct: 72 RPKAIEVSGPDGAPVQG 88
Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 35/77 (45%), Positives = 52/77 (67%)
Query: 111 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 170
+G VK++D+++GFGFIT D +D+FVH+SSI + F+SL E V+F++ V
Sbjct: 16 KGTVKWFDTQKGFGFITPSDGGDDLFVHQSSI----RSEGFRSLAAEESVEFDVEVDNSG 71
Query: 171 I-EAINVTGPNGIPVQG 186
+AI V+GP+G PVQG
Sbjct: 72 RPKAIEVSGPDGAPVQG 88
>TAIR|locus:2121219 [details] [associations]
symbol:GRP2 "AT4G38680" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0009409 "response to cold" evidence=IEP] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0010228 "vegetative to
reproductive phase transition of meristem" evidence=IMP]
[GO:0048316 "seed development" evidence=IMP] [GO:0048443 "stamen
development" evidence=IMP] [GO:0009414 "response to water
deprivation" evidence=IEP] [GO:0032508 "DNA duplex unwinding"
evidence=IDA] [GO:0043457 "regulation of cellular respiration"
evidence=IMP] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0009631 "cold
acclimation" evidence=IGI] [GO:0005829 "cytosol" evidence=IDA]
[GO:0009269 "response to desiccation" evidence=IEP] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP]
InterPro:IPR001878 InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050 PROSITE:PS50158
SMART:SM00343 SMART:SM00357 Prosite:PS00352 GO:GO:0005829
GO:GO:0005886 GO:GO:0009737 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0005730 GO:GO:0006355 GO:GO:0046872 GO:GO:0008270
GO:GO:0003729 GO:GO:0009631 GO:GO:0048443 GO:GO:0048316
GO:GO:0003690 GO:GO:0003697 GO:GO:0010228 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 Gene3D:4.10.60.10 GO:GO:0009269
EMBL:AL161593 HOGENOM:HOG000186262 InterPro:IPR019844 GO:GO:0043457
eggNOG:COG1278 GO:GO:0032508 EMBL:S47408 EMBL:AL035540
EMBL:AF360202 EMBL:AF385696 EMBL:AY040049 EMBL:AY133591
EMBL:AK318762 IPI:IPI00537614 IPI:IPI00930938 PIR:JQ1061
RefSeq:NP_195580.1 UniGene:At.24348 UniGene:At.75605 HSSP:O54310
ProteinModelPortal:Q41188 SMR:Q41188 STRING:Q41188 PRIDE:Q41188
ProMEX:Q41188 EnsemblPlants:AT4G38680.1 GeneID:830024
KEGG:ath:AT4G38680 TAIR:At4g38680 InParanoid:Q41188 OMA:DCYKCGE
PhylomeDB:Q41188 ProtClustDB:CLSN2683565 Genevestigator:Q41188
Uniprot:Q41188
Length = 203
Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 34/77 (44%), Positives = 53/77 (68%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 69
+G VK++D+++GFGFIT D +D+FVH+SSI + F+SL E V+F + + +
Sbjct: 12 KGSVKWFDTQKGFGFITPDDGGDDLFVHQSSI----RSEGFRSLAAEEAVEFEVEIDNNN 67
Query: 70 I-EAINVTGPNGIPVQG 85
+AI+V+GP+G PVQG
Sbjct: 68 RPKAIDVSGPDGAPVQG 84
Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 34/77 (44%), Positives = 53/77 (68%)
Query: 111 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 170
+G VK++D+++GFGFIT D +D+FVH+SSI + F+SL E V+F + + +
Sbjct: 12 KGSVKWFDTQKGFGFITPDDGGDDLFVHQSSI----RSEGFRSLAAEEAVEFEVEIDNNN 67
Query: 171 I-EAINVTGPNGIPVQG 186
+AI+V+GP+G PVQG
Sbjct: 68 RPKAIDVSGPDGAPVQG 84
>WB|WBGene00000474 [details] [associations]
symbol:cey-3 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0043021 "ribonucleoprotein complex
binding" evidence=IDA] [GO:0030529 "ribonucleoprotein complex"
evidence=IDA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0006355
GO:GO:0003677 GO:GO:0030529 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0043021 InterPro:IPR019844 eggNOG:COG1278
GeneTree:ENSGT00390000009256 HSSP:P41016 EMBL:FO081398
HOGENOM:HOG000016644 PIR:T29322 RefSeq:NP_491631.1
ProteinModelPortal:P91398 SMR:P91398 STRING:P91398 PaxDb:P91398
EnsemblMetazoa:M01E11.5.1 EnsemblMetazoa:M01E11.5.2 GeneID:172211
KEGG:cel:CELE_M01E11.5 UCSC:M01E11.5.1 CTD:172211 WormBase:M01E11.5
InParanoid:P91398 OMA:FDSKETE NextBio:874515 Uniprot:P91398
Length = 265
Score = 158 (60.7 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 34/79 (43%), Positives = 54/79 (68%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFF-QSLGLGEIVDFNIGVGK 67
++G VK+Y R +GFI+R D ++D+FVH+++I K + +KF+ ++L E V F++ GK
Sbjct: 64 LQGKVKWYSVLRRYGFISRSDGEKDVFVHQTAISKSDTEKFYLRTLADEEEVLFDLVDGK 123
Query: 68 KDIEAINVTGPNGIPVQGA 86
EA NVTGP G+ V G+
Sbjct: 124 NGPEAANVTGPAGVNVSGS 142
Score = 158 (60.7 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 34/79 (43%), Positives = 54/79 (68%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFF-QSLGLGEIVDFNIGVGK 168
++G VK+Y R +GFI+R D ++D+FVH+++I K + +KF+ ++L E V F++ GK
Sbjct: 64 LQGKVKWYSVLRRYGFISRSDGEKDVFVHQTAISKSDTEKFYLRTLADEEEVLFDLVDGK 123
Query: 169 KDIEAINVTGPNGIPVQGA 187
EA NVTGP G+ V G+
Sbjct: 124 NGPEAANVTGPAGVNVSGS 142
>UNIPROTKB|F1M2W5 [details] [associations]
symbol:F1M2W5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR002059 Pfam:PF00313 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GeneTree:ENSGT00390000009256 IPI:IPI00950285
Ensembl:ENSRNOT00000067498 ArrayExpress:F1M2W5 Uniprot:F1M2W5
Length = 328
Score = 157 (60.3 bits), Expect = 5.9e-11, P = 5.9e-11
Identities = 33/83 (39%), Positives = 51/83 (61%)
Query: 23 GFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIP 82
GFI R D KED+FVH++++ K NP+K + +G GE F++ G+K E +VT P G+P
Sbjct: 63 GFINRNDTKEDVFVHQTAVKKKNPRKNLRRVGDGE-TGFDVVEGEKGAEVASVTDPGGVP 121
Query: 83 VQG----APKSSSETVSGTYRND 101
VQG A ++ G Y+++
Sbjct: 122 VQGGKGAADRNHYRRYPGNYQHN 144
Score = 156 (60.0 bits), Expect = 7.6e-11, P = 7.6e-11
Identities = 30/63 (47%), Positives = 43/63 (68%)
Query: 124 GFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIP 183
GFI R D KED+FVH++++ K NP+K + +G GE F++ G+K E +VT P G+P
Sbjct: 63 GFINRNDTKEDVFVHQTAVKKKNPRKNLRRVGDGE-TGFDVVEGEKGAEVASVTDPGGVP 121
Query: 184 VQG 186
VQG
Sbjct: 122 VQG 124
>UNIPROTKB|F1SN83 [details] [associations]
symbol:F1SN83 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 GO:GO:0006355 GO:GO:0003677 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GeneTree:ENSGT00390000009256
EMBL:CU856056 EMBL:FP015901 Ensembl:ENSSSCT00000006028
Ensembl:ENSSSCT00000006029 Uniprot:F1SN83
Length = 299
Score = 155 (59.6 bits), Expect = 7.3e-11, P = 7.3e-11
Identities = 33/76 (43%), Positives = 51/76 (67%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 70
G VK + + G+GFI R D KED+ VH ++I K NP+K+ ++ G GE ++F++ VG++
Sbjct: 45 GTVKCFSGRNGYGFINRNDTKEDVCVH-TAIKKNNPRKYLRTKGDGETMEFDV-VGEEAG 102
Query: 71 EAINVTGPNGIPVQGA 86
EA NVT G+ QG+
Sbjct: 103 EAANVTSRGGV-AQGS 117
Score = 155 (59.6 bits), Expect = 7.3e-11, P = 7.3e-11
Identities = 33/76 (43%), Positives = 51/76 (67%)
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 171
G VK + + G+GFI R D KED+ VH ++I K NP+K+ ++ G GE ++F++ VG++
Sbjct: 45 GTVKCFSGRNGYGFINRNDTKEDVCVH-TAIKKNNPRKYLRTKGDGETMEFDV-VGEEAG 102
Query: 172 EAINVTGPNGIPVQGA 187
EA NVT G+ QG+
Sbjct: 103 EAANVTSRGGV-AQGS 117
>UNIPROTKB|I3LAD3 [details] [associations]
symbol:I3LAD3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 GO:GO:0006355 GO:GO:0003677 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GeneTree:ENSGT00390000009256
EMBL:CU856056 EMBL:FP015901 Ensembl:ENSSSCT00000023603
Ensembl:ENSSSCT00000025195 Uniprot:I3LAD3
Length = 315
Score = 155 (59.6 bits), Expect = 8.6e-11, P = 8.6e-11
Identities = 33/76 (43%), Positives = 51/76 (67%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 70
G VK + + G+GFI R D KED+ VH ++I K NP+K+ ++ G GE ++F++ VG++
Sbjct: 57 GTVKCFSGRNGYGFINRNDTKEDVCVH-TAIKKNNPRKYLRTKGDGETMEFDV-VGEEAG 114
Query: 71 EAINVTGPNGIPVQGA 86
EA NVT G+ QG+
Sbjct: 115 EAANVTSRGGV-AQGS 129
Score = 155 (59.6 bits), Expect = 8.6e-11, P = 8.6e-11
Identities = 33/76 (43%), Positives = 51/76 (67%)
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 171
G VK + + G+GFI R D KED+ VH ++I K NP+K+ ++ G GE ++F++ VG++
Sbjct: 57 GTVKCFSGRNGYGFINRNDTKEDVCVH-TAIKKNNPRKYLRTKGDGETMEFDV-VGEEAG 114
Query: 172 EAINVTGPNGIPVQGA 187
EA NVT G+ QG+
Sbjct: 115 EAANVTSRGGV-AQGS 129
>UNIPROTKB|G3N2S9 [details] [associations]
symbol:G3N2S9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0006355 GO:GO:0003677
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 GeneTree:ENSGT00390000009256 EMBL:DAAA02073372
Ensembl:ENSBTAT00000065366 Uniprot:G3N2S9
Length = 224
Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 29/79 (36%), Positives = 51/79 (64%)
Query: 8 TVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGK 67
+V G V + K+G+GFI+ + +ED+FVH ++I + NP + S+ GE V+F++ G+
Sbjct: 9 SVLGSVVRFKEKKGYGFISMHNTQEDVFVHHTAITRKNPCMYRGSVENGETVEFDVVQGE 68
Query: 68 KDIEAINVTGPNGIPVQGA 86
+ +A VTGP P++G+
Sbjct: 69 QGTKAAKVTGPVDAPLKGS 87
Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 29/79 (36%), Positives = 51/79 (64%)
Query: 109 TVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGK 168
+V G V + K+G+GFI+ + +ED+FVH ++I + NP + S+ GE V+F++ G+
Sbjct: 9 SVLGSVVRFKEKKGYGFISMHNTQEDVFVHHTAITRKNPCMYRGSVENGETVEFDVVQGE 68
Query: 169 KDIEAINVTGPNGIPVQGA 187
+ +A VTGP P++G+
Sbjct: 69 QGTKAAKVTGPVDAPLKGS 87
>UNIPROTKB|F1LUS5 [details] [associations]
symbol:F1LUS5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR002059 Pfam:PF00313 PRINTS:PR00050
GO:GO:0006355 GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GeneTree:ENSGT00390000009256 IPI:IPI00566025
Ensembl:ENSRNOT00000032550 Uniprot:F1LUS5
Length = 210
Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 32/96 (33%), Positives = 55/96 (57%)
Query: 5 EIHTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIG 64
EI T+R + + +G++ + + D+FVH+++I K NP+K+ + G E V+F++
Sbjct: 28 EIFTIRMELSL---RNIYGYVGKNSSGNDVFVHQTAIKKNNPRKYLHTTGDRETVEFDVI 84
Query: 65 VGKKDIEAINVTGPNGIPVQGAPKSSSETVSGTYRN 100
G+KD EA N+ GP G VQG+ ++ Y N
Sbjct: 85 EGEKDAEAANIIGPGG--VQGSQYAAGTNHYSRYCN 118
Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 26/65 (40%), Positives = 44/65 (67%)
Query: 123 FGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGI 182
+G++ + + D+FVH+++I K NP+K+ + G E V+F++ G+KD EA N+ GP G
Sbjct: 42 YGYVGKNSSGNDVFVHQTAIKKNNPRKYLHTTGDRETVEFDVIEGEKDAEAANIIGPGG- 100
Query: 183 PVQGA 187
VQG+
Sbjct: 101 -VQGS 104
>UNIPROTKB|Q5EB47 [details] [associations]
symbol:lin28a "Protein lin-28 homolog A" species:8364
"Xenopus (Silurana) tropicalis" [GO:0000932 "cytoplasmic mRNA
processing body" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0010494
"cytoplasmic stress granule" evidence=ISS] [GO:0010587 "miRNA
catabolic process" evidence=ISS] [GO:0019827 "stem cell
maintenance" evidence=ISS] [GO:0031054 "pre-miRNA processing"
evidence=ISS] [GO:0031123 "RNA 3'-end processing" evidence=ISS]
InterPro:IPR001878 InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050 PROSITE:PS50158
SMART:SM00343 SMART:SM00357 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0003723
GO:GO:0000932 GO:GO:0031054 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 HSSP:Q9H9Z2 Gene3D:4.10.60.10 SUPFAM:SSF57756
GO:GO:0019827 GO:GO:0010494 eggNOG:COG1278 CTD:79727
HOGENOM:HOG000047091 HOVERGEN:HBG081922 OrthoDB:EOG4640D4
GO:GO:0010587 GO:GO:0031123 EMBL:CR761690 EMBL:BC090084
RefSeq:NP_001015806.2 RefSeq:NP_001016266.1 UniGene:Str.45911
ProteinModelPortal:Q5EB47 SMR:Q5EB47 STRING:Q5EB47 GeneID:548523
KEGG:xtr:548523 Xenbase:XB-GENE-491384 Bgee:Q5EB47 Uniprot:Q5EB47
Length = 195
Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 38/114 (33%), Positives = 60/114 (52%)
Query: 85 GAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFITR-------LDNKEDIFV 137
G PKS ET +++D + G+ K+++ + GFGF+T L+ D+FV
Sbjct: 12 GLPKSLDETAD-IHKSDESL--IFQGSGVCKWFNVRMGFGFLTMTKKEGTDLETPVDVFV 68
Query: 138 HKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGAPKVP 191
H+S K++ + F +SL GE V+F K +E+ VTGP G P G+ + P
Sbjct: 69 HQS---KLHMEGF-RSLKEGESVEFTFKKSSKGLESTRVTGPGGAPCIGSERRP 118
Score = 120 (47.3 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 30/85 (35%), Positives = 48/85 (56%)
Query: 11 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
G+ K+++ + GFGF+T L+ D+FVH+S K++ + F +SL GE V+F
Sbjct: 36 GVCKWFNVRMGFGFLTMTKKEGTDLETPVDVFVHQS---KLHMEGF-RSLKEGESVEFTF 91
Query: 64 GVGKKDIEAINVTGPNGIPVQGAPK 88
K +E+ VTGP G P G+ +
Sbjct: 92 KKSSKGLESTRVTGPGGAPCIGSER 116
>UNIPROTKB|F1M549 [details] [associations]
symbol:F1M549 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
SMART:SM00357 GO:GO:0006355 GO:GO:0003677 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GeneTree:ENSGT00390000009256
IPI:IPI00764317 Ensembl:ENSRNOT00000013847 Uniprot:F1M549
Length = 305
Score = 142 (55.0 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 35/77 (45%), Positives = 50/77 (64%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK++ + G+GFI R D KED+ V + +I K N +K +S+G GE +F++ G+K
Sbjct: 52 VLGTVKWF-VRNGYGFINRNDTKEDVCVQQIAI-KNNSRKDLRSVGDGE-TEFDVVEGEK 108
Query: 69 DIEAINVTGPNGIPVQG 85
+A N TGP G PVQG
Sbjct: 109 G-DAENDTGPGGAPVQG 124
Score = 142 (55.0 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 35/77 (45%), Positives = 50/77 (64%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK++ + G+GFI R D KED+ V + +I K N +K +S+G GE +F++ G+K
Sbjct: 52 VLGTVKWF-VRNGYGFINRNDTKEDVCVQQIAI-KNNSRKDLRSVGDGE-TEFDVVEGEK 108
Query: 170 DIEAINVTGPNGIPVQG 186
+A N TGP G PVQG
Sbjct: 109 G-DAENDTGPGGAPVQG 124
>WB|WBGene00000475 [details] [associations]
symbol:cey-4 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IDA] [GO:0043021 "ribonucleoprotein complex binding"
evidence=IDA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
SMART:SM00357 GO:GO:0006355 GO:GO:0003677 GO:GO:0030529
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0043021
GeneTree:ENSGT00390000009256 EMBL:AL023839 EMBL:Z73424 PIR:T19920
RefSeq:NP_499393.1 HSSP:P41016 ProteinModelPortal:G5EDV3 SMR:G5EDV3
IntAct:G5EDV3 EnsemblMetazoa:Y39A1C.3.1 EnsemblMetazoa:Y39A1C.3.2
GeneID:176516 KEGG:cel:CELE_Y39A1C.3 CTD:176516 WormBase:Y39A1C.3
OMA:VFDIVEG NextBio:892912 Uniprot:G5EDV3
Length = 294
Score = 140 (54.3 bits), Expect = 3.4e-09, P = 3.4e-09
Identities = 37/90 (41%), Positives = 55/90 (61%)
Query: 2 TKFEIHT-VRGIVKFYDSKRGFGFITR---LDNKEDIFVHKSSIVKMNPKKFF-QSLGLG 56
+K I T V+G VK++ + +GF+ R D ED FVH+++I K + KF+ ++L
Sbjct: 81 SKKVIETGVKGHVKWFSVRGRYGFVARDKPTDENEDFFVHQTAITKSSTIKFYLRTLDDD 140
Query: 57 EIVDFNIGVGKKDIEAINVTGPNGIPVQGA 86
E V F+I G K EA NVTGP+G V+G+
Sbjct: 141 EPVVFDIVEGLKGPEAANVTGPDGENVRGS 170
Score = 139 (54.0 bits), Expect = 8.7e-09, P = 8.7e-09
Identities = 34/82 (41%), Positives = 51/82 (62%)
Query: 110 VRGIVKFYDSKRGFGFITR---LDNKEDIFVHKSSIVKMNPKKFF-QSLGLGEIVDFNIG 165
V+G VK++ + +GF+ R D ED FVH+++I K + KF+ ++L E V F+I
Sbjct: 89 VKGHVKWFSVRGRYGFVARDKPTDENEDFFVHQTAITKSSTIKFYLRTLDDDEPVVFDIV 148
Query: 166 VGKKDIEAINVTGPNGIPVQGA 187
G K EA NVTGP+G V+G+
Sbjct: 149 EGLKGPEAANVTGPDGENVRGS 170
>ZFIN|ZDB-GENE-040426-747 [details] [associations]
symbol:lin28a "lin-28 homolog A (C. elegans)"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0010629
"negative regulation of gene expression" evidence=IMP] [GO:0005634
"nucleus" evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0031054 "pre-miRNA processing" evidence=ISS]
[GO:0031123 "RNA 3'-end processing" evidence=ISS] [GO:0019827 "stem
cell maintenance" evidence=ISS] [GO:0000932 "cytoplasmic mRNA
processing body" evidence=ISS] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0010587 "miRNA catabolic process"
evidence=ISS] [GO:0031047 "gene silencing by RNA" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] InterPro:IPR001878 InterPro:IPR002059
InterPro:IPR011129 Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050
PROSITE:PS50158 SMART:SM00343 SMART:SM00357
ZFIN:ZDB-GENE-040426-747 GO:GO:0005634 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0003723 GO:GO:0000932
GO:GO:0031054 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
HSSP:Q9H9Z2 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0019827
GO:GO:0010494 eggNOG:COG1278 GeneTree:ENSGT00390000001177 CTD:79727
HOGENOM:HOG000047091 HOVERGEN:HBG081922 OrthoDB:EOG4640D4
GO:GO:0010587 GO:GO:0031123 EMBL:BX322664 EMBL:BC044433
IPI:IPI00495578 RefSeq:NP_957385.1 UniGene:Dr.24217
ProteinModelPortal:Q803L0 SMR:Q803L0 STRING:Q803L0 PRIDE:Q803L0
Ensembl:ENSDART00000098970 Ensembl:ENSDART00000142509 GeneID:394066
KEGG:dre:394066 InParanoid:Q803L0 NextBio:20815023
ArrayExpress:Q803L0 Bgee:Q803L0 Uniprot:Q803L0
Length = 202
Score = 136 (52.9 bits), Expect = 8.7e-09, P = 8.7e-09
Identities = 37/114 (32%), Positives = 60/114 (52%)
Query: 85 GAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFITR-------LDNKEDIFV 137
G K+ E + + + F H G+ K+++ + GFGF++ LD+ D+FV
Sbjct: 13 GCTKTEEEEAASSEEDSGSF---HG-SGVCKWFNVRMGFGFLSMTHREGICLDSPVDVFV 68
Query: 138 HKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGAPKVP 191
H+S K++ + F +SL GE V+F K +E++ VTGP G P G+ K P
Sbjct: 69 HQS---KLHMEGF-RSLKEGEAVEFTFKRSSKGLESLQVTGPGGAPCVGSEKKP 118
Score = 134 (52.2 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 34/101 (33%), Positives = 54/101 (53%)
Query: 11 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
G+ K+++ + GFGF++ LD+ D+FVH+S K++ + F +SL GE V+F
Sbjct: 36 GVCKWFNVRMGFGFLSMTHREGICLDSPVDVFVHQS---KLHMEGF-RSLKEGEAVEFTF 91
Query: 64 GVGKKDIEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFF 104
K +E++ VTGP G P G+ K T + D F
Sbjct: 92 KRSSKGLESLQVTGPGGAPCVGSEKKPKGTQKRRSKGDRCF 132
>UNIPROTKB|P0A9Y6 [details] [associations]
symbol:cspC species:83333 "Escherichia coli K-12"
[GO:0001072 "RNA binding transcription antitermination factor
activity" evidence=IDA] [GO:0060567 "negative regulation of
DNA-dependent transcription, termination" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0003697 "single-stranded DNA
binding" evidence=IDA] [GO:0031564 "transcription antitermination"
evidence=IDA] [GO:0016020 "membrane" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 InterPro:IPR012156
Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 GO:GO:0005737 GO:GO:0016020 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0006351 GO:GO:0003723 GO:GO:0003697 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR019844
eggNOG:COG1278 HOGENOM:HOG000070674 KO:K03704 GO:GO:0001072
GO:GO:0060567 EMBL:L28430 EMBL:D28496 PIR:S43618 RefSeq:NP_416337.1
RefSeq:YP_490084.1 ProteinModelPortal:P0A9Y6 SMR:P0A9Y6
DIP:DIP-36183N IntAct:P0A9Y6 MINT:MINT-1218847 SWISS-2DPAGE:P0A9Y6
PaxDb:P0A9Y6 PRIDE:P0A9Y6 EnsemblBacteria:EBESCT00000000185
EnsemblBacteria:EBESCT00000017479 GeneID:12934542 GeneID:946339
KEGG:ecj:Y75_p1798 KEGG:eco:b1823 PATRIC:32118965 EchoBASE:EB2120
EcoGene:EG12204 OMA:LEEGQHV ProtClustDB:PRK10943
BioCyc:EcoCyc:EG12204-MONOMER BioCyc:ECOL316407:JW1812-MONOMER
Genevestigator:P0A9Y6 Uniprot:P0A9Y6
Length = 69
Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 29/68 (42%), Positives = 45/68 (66%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
++G VK+++ +GFGFIT D +D+FVH S+I + N F++L G+ V+F I G+K
Sbjct: 4 IKGQVKWFNESKGFGFITPADGSKDVFVHFSAI-QGNG---FKTLAEGQNVEFEIQDGQK 59
Query: 69 DIEAINVT 76
A+NVT
Sbjct: 60 GPAAVNVT 67
Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 29/68 (42%), Positives = 45/68 (66%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
++G VK+++ +GFGFIT D +D+FVH S+I + N F++L G+ V+F I G+K
Sbjct: 4 IKGQVKWFNESKGFGFITPADGSKDVFVHFSAI-QGNG---FKTLAEGQNVEFEIQDGQK 59
Query: 170 DIEAINVT 177
A+NVT
Sbjct: 60 GPAAVNVT 67
>UNIPROTKB|Q8JHC4 [details] [associations]
symbol:lin28a "Protein lin-28 homolog A" species:8355
"Xenopus laevis" [GO:0000932 "cytoplasmic mRNA processing body"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0010587 "miRNA catabolic process" evidence=ISS]
[GO:0019827 "stem cell maintenance" evidence=ISS] [GO:0031054
"pre-miRNA processing" evidence=ISS] [GO:0031123 "RNA 3'-end
processing" evidence=ISS] InterPro:IPR001878 InterPro:IPR002059
InterPro:IPR011129 Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050
PROSITE:PS50158 SMART:SM00343 SMART:SM00357 GO:GO:0005634
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0003723 GO:GO:0000932 GO:GO:0031054 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 HSSP:Q9H9Z2 Gene3D:4.10.60.10
SUPFAM:SSF57756 GO:GO:0019827 GO:GO:0010494 CTD:79727
HOVERGEN:HBG081922 GO:GO:0010587 GO:GO:0031123 EMBL:AF521098
RefSeq:NP_001080918.1 UniGene:Xl.76870 ProteinModelPortal:Q8JHC4
SMR:Q8JHC4 GeneID:387262 KEGG:xla:387262 Xenbase:XB-GENE-866059
Uniprot:Q8JHC4
Length = 195
Score = 133 (51.9 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 37/115 (32%), Positives = 60/115 (52%)
Query: 84 QGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFITR-------LDNKEDIF 136
+G PKS T +++D + G+ K+++ + GFGF+T L+ D+F
Sbjct: 11 EGLPKSLDGTAD-IHKSDK--SVIFQGSGVCKWFNVRMGFGFLTMTKKEGTDLETPLDVF 67
Query: 137 VHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGAPKVP 191
VH+S K++ + F +SL GE V+F K +E+ VTGP G P G+ + P
Sbjct: 68 VHQS---KLHMEGF-RSLKEGESVEFTFKKSSKGLESTQVTGPGGAPCIGSERRP 118
Score = 119 (46.9 bits), Expect = 5.2e-06, P = 5.2e-06
Identities = 30/85 (35%), Positives = 48/85 (56%)
Query: 11 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
G+ K+++ + GFGF+T L+ D+FVH+S K++ + F +SL GE V+F
Sbjct: 36 GVCKWFNVRMGFGFLTMTKKEGTDLETPLDVFVHQS---KLHMEGF-RSLKEGESVEFTF 91
Query: 64 GVGKKDIEAINVTGPNGIPVQGAPK 88
K +E+ VTGP G P G+ +
Sbjct: 92 KKSSKGLESTQVTGPGGAPCIGSER 116
>TIGR_CMR|GSU_0207 [details] [associations]
symbol:GSU_0207 "cold-shock domain family protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003677 "DNA
binding" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009409 "response to cold"
evidence=ISS] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0005737 GO:GO:0006355
GO:GO:0003677 EMBL:AE017180 GenomeReviews:AE017180_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 HOGENOM:HOG000070674 KO:K03704
RefSeq:NP_951268.1 ProteinModelPortal:Q74GN9 SMR:Q74GN9
GeneID:2687733 KEGG:gsu:GSU0207 PATRIC:22023162 OMA:MSTITGN
BioCyc:GSUL243231:GH27-162-MONOMER Uniprot:Q74GN9
Length = 66
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 29/68 (42%), Positives = 43/68 (63%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ +GFGF+ + +N ED+FVH S+I N F +SL G+ V F + G K
Sbjct: 2 VNGTVKWFNDSKGFGFLEQ-ENGEDVFVHFSAI---NGNGF-KSLAEGDRVTFEVTKGPK 56
Query: 69 DIEAINVT 76
++A NVT
Sbjct: 57 GLQAANVT 64
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 29/68 (42%), Positives = 43/68 (63%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ +GFGF+ + +N ED+FVH S+I N F +SL G+ V F + G K
Sbjct: 2 VNGTVKWFNDSKGFGFLEQ-ENGEDVFVHFSAI---NGNGF-KSLAEGDRVTFEVTKGPK 56
Query: 170 DIEAINVT 177
++A NVT
Sbjct: 57 GLQAANVT 64
>TIGR_CMR|GSU_1905 [details] [associations]
symbol:GSU_1905 "cold shock domain family protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003677 "DNA
binding" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009409 "response to cold"
evidence=ISS] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0005737 GO:GO:0006355
GO:GO:0003677 EMBL:AE017180 GenomeReviews:AE017180_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 HOGENOM:HOG000070674 KO:K03704
RefSeq:NP_952954.1 ProteinModelPortal:Q74BX3 SMR:Q74BX3
GeneID:2688446 KEGG:gsu:GSU1905 PATRIC:22026675 OMA:FISRDNG
ProtClustDB:CLSK828634 BioCyc:GSUL243231:GH27-1948-MONOMER
Uniprot:Q74BX3
Length = 66
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 29/65 (44%), Positives = 42/65 (64%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 70
G VK+++ +GFGFI + DN ED+FVH S+I + F+SL GE V F++ G K +
Sbjct: 4 GRVKWFNDAKGFGFIEQ-DNGEDVFVHFSAIQQDG----FKSLAEGEQVSFDVVNGPKGL 58
Query: 71 EAINV 75
+A NV
Sbjct: 59 QAANV 63
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 29/65 (44%), Positives = 42/65 (64%)
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 171
G VK+++ +GFGFI + DN ED+FVH S+I + F+SL GE V F++ G K +
Sbjct: 4 GRVKWFNDAKGFGFIEQ-DNGEDVFVHFSAIQQDG----FKSLAEGEQVSFDVVNGPKGL 58
Query: 172 EAINV 176
+A NV
Sbjct: 59 QAANV 63
>UNIPROTKB|P0A972 [details] [associations]
symbol:cspE species:83333 "Escherichia coli K-12"
[GO:0003723 "RNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0001072 "RNA
binding transcription antitermination factor activity"
evidence=IDA] [GO:0060567 "negative regulation of DNA-dependent
transcription, termination" evidence=IDA] [GO:0031564
"transcription antitermination" evidence=IDA] [GO:0008143 "poly(A)
RNA binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 InterPro:IPR012156
Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 GO:GO:0005737 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0006351
GO:GO:0003697 EMBL:U82598 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR019844 EMBL:D28497 EMBL:S83396
eggNOG:COG1278 HOGENOM:HOG000070674 KO:K03704 GO:GO:0001072
GO:GO:0060567 OMA:WTKRTTI EMBL:L29054 PIR:S49050 RefSeq:NP_415156.1
RefSeq:YP_488914.1 ProteinModelPortal:P0A972 SMR:P0A972
DIP:DIP-47834N IntAct:P0A972 MINT:MINT-1221433 PaxDb:P0A972
PRIDE:P0A972 EnsemblBacteria:EBESCT00000004662
EnsemblBacteria:EBESCT00000018389 GeneID:12931648 GeneID:947024
KEGG:ecj:Y75_p0613 KEGG:eco:b0623 PATRIC:32116426 EchoBASE:EB2096
EcoGene:EG12179 ProtClustDB:PRK09507 BioCyc:EcoCyc:EG12179-MONOMER
BioCyc:ECOL316407:JW0618-MONOMER Genevestigator:P0A972
GO:GO:0008143 Uniprot:P0A972
Length = 69
Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 28/67 (41%), Positives = 42/67 (62%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
++G VK+++ +GFGFIT D +D+FVH S+I + N F++L G+ V+F I G K
Sbjct: 4 IKGNVKWFNESKGFGFITPEDGSKDVFVHFSAI-QTNG---FKTLAEGQRVEFEITNGAK 59
Query: 69 DIEAINV 75
A NV
Sbjct: 60 GPSAANV 66
Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 28/67 (41%), Positives = 42/67 (62%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
++G VK+++ +GFGFIT D +D+FVH S+I + N F++L G+ V+F I G K
Sbjct: 4 IKGNVKWFNESKGFGFITPEDGSKDVFVHFSAI-QTNG---FKTLAEGQRVEFEITNGAK 59
Query: 170 DIEAINV 176
A NV
Sbjct: 60 GPSAANV 66
>TIGR_CMR|CPS_0718 [details] [associations]
symbol:CPS_0718 "cold-shock DNA-binding domain family
protein" species:167879 "Colwellia psychrerythraea 34H" [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] InterPro:IPR002059
InterPro:IPR011129 InterPro:IPR012156 Pfam:PF00313
PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
GO:GO:0005737 GO:GO:0006355 GO:GO:0003677 EMBL:CP000083
GenomeReviews:CP000083_GR Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR019844 eggNOG:COG1278
HOGENOM:HOG000070674 KO:K03704 RefSeq:YP_267468.1
ProteinModelPortal:Q488P6 SMR:Q488P6 GeneID:3518546
KEGG:cps:CPS_0718 PATRIC:21464753 OMA:QKGPCAN
ProtClustDB:CLSK768090 BioCyc:CPSY167879:GI48-805-MONOMER
Uniprot:Q488P6
Length = 68
Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 24/59 (40%), Positives = 38/59 (64%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+GIVK+++S +GFGFIT D +D+FVH S I + +L G+ V++ +G G+K
Sbjct: 3 KGIVKWFNSDKGFGFITPEDGSKDLFVHHSEIQSGGE---YATLADGQTVEYEVGQGQK 58
Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 24/59 (40%), Positives = 38/59 (64%)
Query: 111 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+GIVK+++S +GFGFIT D +D+FVH S I + +L G+ V++ +G G+K
Sbjct: 3 KGIVKWFNSDKGFGFITPEDGSKDLFVHHSEIQSGGE---YATLADGQTVEYEVGQGQK 58
>UNIPROTKB|P36995 [details] [associations]
symbol:cspB species:83333 "Escherichia coli K-12"
[GO:0003723 "RNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0009409 "response
to cold" evidence=IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006950 "response to stress"
evidence=IEA;IEP] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0005737 GO:GO:0006355
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0009409 GO:GO:0006351 GO:GO:0003723
GO:GO:0003697 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 eggNOG:COG1278 HOGENOM:HOG000070674 KO:K03704
EMBL:L28429 EMBL:AF003590 PIR:S43617 RefSeq:NP_416075.1
RefSeq:YP_489821.1 ProteinModelPortal:P36995 SMR:P36995
DIP:DIP-9334N IntAct:P36995 MINT:MINT-1241665 PaxDb:P36995
EnsemblBacteria:EBESCT00000000475 EnsemblBacteria:EBESCT00000016617
GeneID:12930135 GeneID:946091 KEGG:ecj:Y75_p1533 KEGG:eco:b1557
PATRIC:32118416 EchoBASE:EB2119 EcoGene:EG12203 OMA:ANVFRRN
ProtClustDB:CLSK891756 BioCyc:EcoCyc:EG12203-MONOMER
BioCyc:ECOL316407:JW1549-MONOMER Genevestigator:P36995
Uniprot:P36995
Length = 71
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 26/65 (40%), Positives = 41/65 (63%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 70
G+VK++++ +GFGFI+ +D +D+FVH S+I N + F+ G+ V F+I G K
Sbjct: 7 GLVKWFNADKGFGFISPVDGSKDVFVHFSAIQNDNYRTLFE----GQKVTFSIESGAKGP 62
Query: 71 EAINV 75
A NV
Sbjct: 63 AAANV 67
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 26/65 (40%), Positives = 41/65 (63%)
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 171
G+VK++++ +GFGFI+ +D +D+FVH S+I N + F+ G+ V F+I G K
Sbjct: 7 GLVKWFNADKGFGFISPVDGSKDVFVHFSAIQNDNYRTLFE----GQKVTFSIESGAKGP 62
Query: 172 EAINV 176
A NV
Sbjct: 63 AAANV 67
>UNIPROTKB|P0A9X9 [details] [associations]
symbol:cspA species:83333 "Escherichia coli K-12"
[GO:0009409 "response to cold" evidence=IEP] [GO:0006950 "response
to stress" evidence=IEP] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0003727 "single-stranded RNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0003697 "single-stranded DNA
binding" evidence=IDA] [GO:0060567 "negative regulation of
DNA-dependent transcription, termination" evidence=IDA] [GO:0001072
"RNA binding transcription antitermination factor activity"
evidence=IDA] [GO:0031564 "transcription antitermination"
evidence=IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEP;IDA;TAS] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 InterPro:IPR012156
Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 GO:GO:0005737 EMBL:U00039 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0009409
GO:GO:0003727 GO:GO:0006351 GO:GO:0003697 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR019844
eggNOG:COG1278 HOGENOM:HOG000070674 KO:K03704 EMBL:M30139
EMBL:U60035 PIR:JH0201 RefSeq:NP_418012.1 RefSeq:YP_491880.1
PDB:1MJC PDB:2BH8 PDB:3MEF PDBsum:1MJC PDBsum:2BH8 PDBsum:3MEF
ProteinModelPortal:P0A9X9 SMR:P0A9X9 DIP:DIP-31862N IntAct:P0A9X9
MINT:MINT-1220153 PaxDb:P0A9X9 PRIDE:P0A9X9
EnsemblBacteria:EBESCT00000002447 EnsemblBacteria:EBESCT00000002448
EnsemblBacteria:EBESCT00000016761 GeneID:12933539 GeneID:948070
KEGG:ecj:Y75_p3621 KEGG:eco:b3556 PATRIC:32122584 EchoBASE:EB0164
EcoGene:EG10166 OMA:AHFRQIT ProtClustDB:PRK10354
BioCyc:EcoCyc:PD03695 BioCyc:ECOL316407:JW3525-MONOMER
EvolutionaryTrace:P0A9X9 Genevestigator:P0A9X9 GO:GO:0001072
GO:GO:0060567 Uniprot:P0A9X9
Length = 70
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 30/66 (45%), Positives = 41/66 (62%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 70
GIVK++++ +GFGFIT D +D+FVH S+I N ++SL G+ V F I G K
Sbjct: 7 GIVKWFNADKGFGFITPDDGSKDVFVHFSAI--QNDG--YKSLDEGQKVSFTIESGAKGP 62
Query: 71 EAINVT 76
A NVT
Sbjct: 63 AAGNVT 68
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 30/66 (45%), Positives = 41/66 (62%)
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 171
GIVK++++ +GFGFIT D +D+FVH S+I N ++SL G+ V F I G K
Sbjct: 7 GIVKWFNADKGFGFITPDDGSKDVFVHFSAI--QNDG--YKSLDEGQKVSFTIESGAKGP 62
Query: 172 EAINVT 177
A NVT
Sbjct: 63 AAGNVT 68
>UNIPROTKB|F1M451 [details] [associations]
symbol:F1M451 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR002059 Pfam:PF00313 PRINTS:PR00050
GO:GO:0006355 GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GeneTree:ENSGT00390000009256 IPI:IPI00569917
Ensembl:ENSRNOT00000034688 OMA:NQQPATS Uniprot:F1M451
Length = 147
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 25/52 (48%), Positives = 35/52 (67%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVD 60
V GIV +++ + G+ FI R D KED FVH++ I K NPK + S+G GE V+
Sbjct: 96 VLGIVTWFNVRNGYVFINRNDTKEDTFVHQTVIKKNNPK-YLHSVGDGETVE 146
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 25/52 (48%), Positives = 35/52 (67%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVD 161
V GIV +++ + G+ FI R D KED FVH++ I K NPK + S+G GE V+
Sbjct: 96 VLGIVTWFNVRNGYVFINRNDTKEDTFVHQTVIKKNNPK-YLHSVGDGETVE 146
>UNIPROTKB|Q45KJ5 [details] [associations]
symbol:LIN28A "Protein lin-28 homolog A" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0010587 "miRNA
catabolic process" evidence=ISS] [GO:0019827 "stem cell
maintenance" evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0031054 "pre-miRNA processing" evidence=ISS]
[GO:0031123 "RNA 3'-end processing" evidence=ISS] [GO:0003723 "RNA
binding" evidence=ISS] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
InterPro:IPR001878 InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050 PROSITE:PS50158
SMART:SM00343 SMART:SM00357 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0003723
GO:GO:0000932 GO:GO:0031054 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 HSSP:Q9H9Z2 Gene3D:4.10.60.10 SUPFAM:SSF57756
GO:GO:0019827 GO:GO:0010494 EMBL:DQ127226 IPI:IPI00573980
RefSeq:NP_001026944.2 UniGene:Gga.21004 ProteinModelPortal:Q45KJ5
SMR:Q45KJ5 GeneID:428206 KEGG:gga:428206 CTD:79727 eggNOG:NOG244191
HOGENOM:HOG000047091 HOVERGEN:HBG081922 InParanoid:Q45KJ5
OrthoDB:EOG4640D4 NextBio:20829257 GO:GO:0010587 GO:GO:0031123
Uniprot:Q45KJ5
Length = 202
Score = 127 (49.8 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 35/91 (38%), Positives = 53/91 (58%)
Query: 11 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
GI K+++ + GFGF++ LD+ D+FVH+S K++ + F +SL GE V+F
Sbjct: 36 GICKWFNVRMGFGFLSMTAKGGAMLDSPVDVFVHQS---KLHMEGF-RSLKEGEAVEFTF 91
Query: 64 GVGKKDIEAINVTGPNGIPVQGA---PKSSS 91
K +E+I VTGP G+ G+ PKS S
Sbjct: 92 KKSSKGLESIRVTGPGGVFCIGSERRPKSKS 122
Score = 125 (49.1 bits), Expect = 8.4e-07, P = 8.4e-07
Identities = 32/87 (36%), Positives = 51/87 (58%)
Query: 112 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 164
GI K+++ + GFGF++ LD+ D+FVH+S K++ + F +SL GE V+F
Sbjct: 36 GICKWFNVRMGFGFLSMTAKGGAMLDSPVDVFVHQS---KLHMEGF-RSLKEGEAVEFTF 91
Query: 165 GVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP G+ G+ + P
Sbjct: 92 KKSSKGLESIRVTGPGGVFCIGSERRP 118
>TIGR_CMR|GSU_0581 [details] [associations]
symbol:GSU_0581 "cold-shock domain family protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003677 "DNA
binding" evidence=ISS] [GO:0009409 "response to cold" evidence=ISS]
InterPro:IPR002059 InterPro:IPR011129 InterPro:IPR012156
Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 GO:GO:0005737 GO:GO:0006355 GO:GO:0003677
EMBL:AE017180 GenomeReviews:AE017180_GR Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR019844
HOGENOM:HOG000070674 KO:K03704 RefSeq:NP_951639.1
ProteinModelPortal:Q74FM5 SMR:Q74FM5 GeneID:2685798
KEGG:gsu:GSU0581 PATRIC:22023911 OMA:RAITSAF ProtClustDB:CLSK827926
BioCyc:GSUL243231:GH27-557-MONOMER Uniprot:Q74FM5
Length = 66
Score = 115 (45.5 bits), Expect = 5.0e-07, P = 5.0e-07
Identities = 26/66 (39%), Positives = 43/66 (65%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 69
+G+VK+++ +G+GFI + +N ED+FVH SSI F++L G+ V F++ G K
Sbjct: 3 KGVVKWFNDSKGYGFIEQ-ENGEDVFVHFSSIQGDG----FKTLVEGQAVTFDVVQGAKG 57
Query: 70 IEAINV 75
++A NV
Sbjct: 58 LQAANV 63
Score = 115 (45.5 bits), Expect = 5.0e-07, P = 5.0e-07
Identities = 26/66 (39%), Positives = 43/66 (65%)
Query: 111 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 170
+G+VK+++ +G+GFI + +N ED+FVH SSI F++L G+ V F++ G K
Sbjct: 3 KGVVKWFNDSKGYGFIEQ-ENGEDVFVHFSSIQGDG----FKTLVEGQAVTFDVVQGAKG 57
Query: 171 IEAINV 176
++A NV
Sbjct: 58 LQAANV 63
>TAIR|locus:2827810 [details] [associations]
symbol:CSP3 "cold shock domain protein 3" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0009409 "response to cold"
evidence=IEP;IMP] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0009631
"cold acclimation" evidence=IMP] [GO:0032508 "DNA duplex unwinding"
evidence=IDA] InterPro:IPR001878 InterPro:IPR002059
InterPro:IPR011129 Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050
PROSITE:PS50158 SMART:SM00343 SMART:SM00357 Prosite:PS00352
GO:GO:0005634 GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0009631 GO:GO:0003723 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 Gene3D:4.10.60.10 SUPFAM:SSF57756
HOGENOM:HOG000186262 KO:K09250 InterPro:IPR019844 eggNOG:COG1278
ProtClustDB:CLSN2685328 GO:GO:0032508 HSSP:O54310 EMBL:AB308041
EMBL:AY035133 EMBL:AY062985 IPI:IPI00519047 PIR:T00837
RefSeq:NP_565427.1 UniGene:At.19464 ProteinModelPortal:Q94C69
SMR:Q94C69 PaxDb:Q94C69 PRIDE:Q94C69 EnsemblPlants:AT2G17870.1
GeneID:816297 KEGG:ath:AT2G17870 TAIR:At2g17870 InParanoid:Q94C69
OMA:MEDQSAA PhylomeDB:Q94C69 Genevestigator:Q94C69 Uniprot:Q94C69
Length = 301
Score = 130 (50.8 bits), Expect = 6.4e-07, P = 6.4e-07
Identities = 31/71 (43%), Positives = 43/71 (60%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD- 69
G V ++ +G+GFIT D E++FVH+SSIV F+SL LGE V++ I +G
Sbjct: 13 GKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSDG----FRSLTLGESVEYEIALGSDGK 68
Query: 70 IEAINVTGPNG 80
+AI VT P G
Sbjct: 69 TKAIEVTAPGG 79
Score = 130 (50.8 bits), Expect = 6.4e-07, P = 6.4e-07
Identities = 31/71 (43%), Positives = 43/71 (60%)
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD- 170
G V ++ +G+GFIT D E++FVH+SSIV F+SL LGE V++ I +G
Sbjct: 13 GKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSDG----FRSLTLGESVEYEIALGSDGK 68
Query: 171 IEAINVTGPNG 181
+AI VT P G
Sbjct: 69 TKAIEVTAPGG 79
>UNIPROTKB|Q9KN00 [details] [associations]
symbol:cspA "Cold shock-like protein CspA" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] InterPro:IPR002059
InterPro:IPR011129 InterPro:IPR012156 Pfam:PF00313
PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
GO:GO:0005737 GO:GO:0006355 GO:GO:0003677 GO:GO:0009409
GO:GO:0006351 EMBL:AE003853 GenomeReviews:AE003853_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 eggNOG:COG1278 KO:K03704 PIR:G82492
RefSeq:NP_232566.1 ProteinModelPortal:Q9KN00 SMR:Q9KN00
PRIDE:Q9KN00 DNASU:2611900 GeneID:2611900 KEGG:vch:VCA0166
PATRIC:20084905 OMA:KMRGKVS ProtClustDB:CLSK788675 Uniprot:Q9KN00
Length = 70
Score = 114 (45.2 bits), Expect = 6.6e-07, P = 6.6e-07
Identities = 26/66 (39%), Positives = 40/66 (60%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 70
G VK+++ +GFGFI++ + +D+FVH SIV F++L G+ V F + GKK
Sbjct: 7 GSVKWFNETKGFGFISQDNGGQDVFVHFKSIVSEG----FKTLAEGQRVSFTVEQGKKGP 62
Query: 71 EAINVT 76
+A VT
Sbjct: 63 QAAQVT 68
Score = 114 (45.2 bits), Expect = 6.6e-07, P = 6.6e-07
Identities = 26/66 (39%), Positives = 40/66 (60%)
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 171
G VK+++ +GFGFI++ + +D+FVH SIV F++L G+ V F + GKK
Sbjct: 7 GSVKWFNETKGFGFISQDNGGQDVFVHFKSIVSEG----FKTLAEGQRVSFTVEQGKKGP 62
Query: 172 EAINVT 177
+A VT
Sbjct: 63 QAAQVT 68
>TIGR_CMR|GSU_0191 [details] [associations]
symbol:GSU_0191 "cold-shock domain family protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003677 "DNA
binding" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009409 "response to cold"
evidence=ISS] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0005737 GO:GO:0006355
GO:GO:0003677 EMBL:AE017180 GenomeReviews:AE017180_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 HOGENOM:HOG000070674 KO:K03704
RefSeq:NP_951252.1 ProteinModelPortal:Q74GQ5 SMR:Q74GQ5
GeneID:2687816 KEGG:gsu:GSU0191 PATRIC:22023128 OMA:SVTFDVQ
ProtClustDB:CLSK827691 BioCyc:GSUL243231:GH27-130-MONOMER
Uniprot:Q74GQ5
Length = 66
Score = 114 (45.2 bits), Expect = 6.6e-07, P = 6.6e-07
Identities = 28/68 (41%), Positives = 41/68 (60%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ +GFGF+ + +N ED+F H S+I F+SL G+ V F I G K
Sbjct: 2 VNGTVKWFNDSKGFGFLEQ-ENGEDVFCHFSAISGDG----FKSLTEGDRVTFEITKGPK 56
Query: 69 DIEAINVT 76
++A NVT
Sbjct: 57 GLQAANVT 64
Score = 114 (45.2 bits), Expect = 6.6e-07, P = 6.6e-07
Identities = 28/68 (41%), Positives = 41/68 (60%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ +GFGF+ + +N ED+F H S+I F+SL G+ V F I G K
Sbjct: 2 VNGTVKWFNDSKGFGFLEQ-ENGEDVFCHFSAISGDG----FKSLTEGDRVTFEITKGPK 56
Query: 170 DIEAINVT 177
++A NVT
Sbjct: 57 GLQAANVT 64
>TIGR_CMR|VC_A0166 [details] [associations]
symbol:VC_A0166 "cold shock transcriptional regulator
CspA" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] InterPro:IPR002059
InterPro:IPR011129 InterPro:IPR012156 Pfam:PF00313
PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
GO:GO:0005737 GO:GO:0006355 GO:GO:0003677 GO:GO:0009409
GO:GO:0006351 EMBL:AE003853 GenomeReviews:AE003853_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 eggNOG:COG1278 KO:K03704 PIR:G82492
RefSeq:NP_232566.1 ProteinModelPortal:Q9KN00 SMR:Q9KN00
PRIDE:Q9KN00 DNASU:2611900 GeneID:2611900 KEGG:vch:VCA0166
PATRIC:20084905 OMA:KMRGKVS ProtClustDB:CLSK788675 Uniprot:Q9KN00
Length = 70
Score = 114 (45.2 bits), Expect = 6.6e-07, P = 6.6e-07
Identities = 26/66 (39%), Positives = 40/66 (60%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 70
G VK+++ +GFGFI++ + +D+FVH SIV F++L G+ V F + GKK
Sbjct: 7 GSVKWFNETKGFGFISQDNGGQDVFVHFKSIVSEG----FKTLAEGQRVSFTVEQGKKGP 62
Query: 71 EAINVT 76
+A VT
Sbjct: 63 QAAQVT 68
Score = 114 (45.2 bits), Expect = 6.6e-07, P = 6.6e-07
Identities = 26/66 (39%), Positives = 40/66 (60%)
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 171
G VK+++ +GFGFI++ + +D+FVH SIV F++L G+ V F + GKK
Sbjct: 7 GSVKWFNETKGFGFISQDNGGQDVFVHFKSIVSEG----FKTLAEGQRVSFTVEQGKKGP 62
Query: 172 EAINVT 177
+A VT
Sbjct: 63 QAAQVT 68
>UNIPROTKB|F1NS05 [details] [associations]
symbol:LIN28A "Protein lin-28 homolog A" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0010587 "miRNA
catabolic process" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0031054 "pre-miRNA processing"
evidence=IEA] [GO:0031123 "RNA 3'-end processing" evidence=IEA]
[GO:0031369 "translation initiation factor binding" evidence=IEA]
[GO:0035198 "miRNA binding" evidence=IEA] [GO:0045666 "positive
regulation of neuron differentiation" evidence=IEA] [GO:0045686
"negative regulation of glial cell differentiation" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0060964 "regulation of gene silencing by miRNA" evidence=IEA]
InterPro:IPR001878 InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050 PROSITE:PS50158
SMART:SM00343 SMART:SM00357 GO:GO:0005730 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0003729
GO:GO:0048863 GO:GO:0035198 GO:GO:0000932 GO:GO:0031054
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0045727 GO:GO:0010494
GeneTree:ENSGT00390000001177 IPI:IPI00573980 GO:GO:0010587
GO:GO:0031123 OMA:GVGVCKW EMBL:AADN02051390
Ensembl:ENSGALT00000000529 Uniprot:F1NS05
Length = 202
Score = 125 (49.1 bits), Expect = 8.4e-07, P = 8.4e-07
Identities = 32/87 (36%), Positives = 51/87 (58%)
Query: 112 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 164
GI K+++ + GFGF++ LD+ D+FVH+S K++ + F +SL GE V+F
Sbjct: 36 GICKWFNVRMGFGFLSMTAKGGAMLDSPVDVFVHQS---KLHMEGF-RSLKEGEAVEFTF 91
Query: 165 GVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP G+ G+ + P
Sbjct: 92 KKSSKGLESIRVTGPGGVFCIGSERRP 118
Score = 123 (48.4 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 34/91 (37%), Positives = 52/91 (57%)
Query: 11 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
GI K+++ + GFGF++ LD+ D+FVH+S K++ + F +SL GE V+F
Sbjct: 36 GICKWFNVRMGFGFLSMTAKGGAMLDSPVDVFVHQS---KLHMEGF-RSLKEGEAVEFTF 91
Query: 64 GVGKKDIEAINVTGPNGIPVQGA---PKSSS 91
K +E+I VTGP G+ G+ PK S
Sbjct: 92 KKSSKGLESIRVTGPGGVFCIGSERRPKGKS 122
>TIGR_CMR|CPS_0737 [details] [associations]
symbol:CPS_0737 "cold-shock DNA-binding domain family
protein" species:167879 "Colwellia psychrerythraea 34H" [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] InterPro:IPR002059
InterPro:IPR011129 InterPro:IPR012156 Pfam:PF00313
PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
GO:GO:0005737 GO:GO:0006355 GO:GO:0003677 EMBL:CP000083
GenomeReviews:CP000083_GR Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR019844 eggNOG:COG1278
HOGENOM:HOG000070674 KO:K03704 RefSeq:YP_267487.1
ProteinModelPortal:Q488M7 SMR:Q488M7 GeneID:3518930
KEGG:cps:CPS_0737 PATRIC:21464787 OMA:PQAENVE
ProtClustDB:CLSK742412 BioCyc:CPSY167879:GI48-824-MONOMER
Uniprot:Q488M7
Length = 69
Score = 113 (44.8 bits), Expect = 8.7e-07, P = 8.7e-07
Identities = 29/68 (42%), Positives = 41/68 (60%)
Query: 8 TVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGK 67
TV G VKF++ +GFGFI + +N D+FVH S+I F++L G+ V F + G+
Sbjct: 4 TVTGKVKFFNETKGFGFIEQ-ENGPDVFVHFSAISGDG----FRTLADGQAVTFTVKQGQ 58
Query: 68 KDIEAINV 75
K EA NV
Sbjct: 59 KGPEAENV 66
Score = 113 (44.8 bits), Expect = 8.7e-07, P = 8.7e-07
Identities = 29/68 (42%), Positives = 41/68 (60%)
Query: 109 TVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGK 168
TV G VKF++ +GFGFI + +N D+FVH S+I F++L G+ V F + G+
Sbjct: 4 TVTGKVKFFNETKGFGFIEQ-ENGPDVFVHFSAISGDG----FRTLADGQAVTFTVKQGQ 58
Query: 169 KDIEAINV 176
K EA NV
Sbjct: 59 KGPEAENV 66
>TIGR_CMR|CHY_0155 [details] [associations]
symbol:CHY_0155 "cold shock protein CspC" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003677 "DNA
binding" evidence=ISS] [GO:0009409 "response to cold" evidence=ISS]
InterPro:IPR002059 InterPro:IPR011129 InterPro:IPR012156
Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 GO:GO:0005737 GO:GO:0006355 GO:GO:0003677
EMBL:CP000141 GenomeReviews:CP000141_GR Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR019844
eggNOG:COG1278 HOGENOM:HOG000070674 KO:K03704
ProtClustDB:CLSK742705 RefSeq:YP_359027.1 ProteinModelPortal:Q3AFQ7
SMR:Q3AFQ7 STRING:Q3AFQ7 GeneID:3726793 KEGG:chy:CHY_0155
PATRIC:21273497 OMA:IETEGSE BioCyc:CHYD246194:GJCN-155-MONOMER
Uniprot:Q3AFQ7
Length = 65
Score = 112 (44.5 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 28/67 (41%), Positives = 43/67 (64%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
++G VK++D K+G+GFI R D D+FVH S+I +K F++L G+ V+F I G +
Sbjct: 1 MQGKVKWFDPKKGYGFIEREDGG-DVFVHFSAI----QEKGFKTLEEGQRVEFEIVEGAR 55
Query: 69 DIEAINV 75
+A NV
Sbjct: 56 GPQAANV 62
Score = 112 (44.5 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 28/67 (41%), Positives = 43/67 (64%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
++G VK++D K+G+GFI R D D+FVH S+I +K F++L G+ V+F I G +
Sbjct: 1 MQGKVKWFDPKKGYGFIEREDGG-DVFVHFSAI----QEKGFKTLEEGQRVEFEIVEGAR 55
Query: 170 DIEAINV 176
+A NV
Sbjct: 56 GPQAANV 62
>UNIPROTKB|P0A986 [details] [associations]
symbol:cspI species:83333 "Escherichia coli K-12"
[GO:0009409 "response to cold" evidence=IDA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 InterPro:IPR012156
Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 GO:GO:0005737 GO:GO:0006355 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003677 GO:GO:0009409 GO:GO:0006351 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR019844
eggNOG:COG1278 HOGENOM:HOG000070674 KO:K03704 OMA:IQSNNFK
PIR:C64910 RefSeq:NP_416070.1 RefSeq:YP_489816.1
ProteinModelPortal:P0A986 SMR:P0A986 DIP:DIP-48195N IntAct:P0A986
MINT:MINT-1309031 PRIDE:P0A986 EnsemblBacteria:EBESCT00000000769
EnsemblBacteria:EBESCT00000016713 GeneID:12931246 GeneID:946099
KEGG:ecj:Y75_p1528 KEGG:eco:b1552 PATRIC:32118406 EchoBASE:EB3636
EcoGene:EG13877 ProtClustDB:CLSK891754 BioCyc:EcoCyc:G6825-MONOMER
BioCyc:ECOL316407:JW1544-MONOMER Genevestigator:P0A986
Uniprot:P0A986
Length = 70
Score = 110 (43.8 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 26/65 (40%), Positives = 42/65 (64%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 70
G+VK+++ ++GFGFIT D +D+FVH S+I + N F++L + V+F I G K
Sbjct: 7 GLVKWFNPEKGFGFITPKDGSKDVFVHFSAI-QSND---FKTLTENQEVEFGIENGPKGP 62
Query: 71 EAINV 75
A++V
Sbjct: 63 AAVHV 67
Score = 110 (43.8 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 26/65 (40%), Positives = 42/65 (64%)
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 171
G+VK+++ ++GFGFIT D +D+FVH S+I + N F++L + V+F I G K
Sbjct: 7 GLVKWFNPEKGFGFITPKDGSKDVFVHFSAI-QSND---FKTLTENQEVEFGIENGPKGP 62
Query: 172 EAINV 176
A++V
Sbjct: 63 AAVHV 67
>UNIPROTKB|P0A978 [details] [associations]
symbol:cspG species:83333 "Escherichia coli K-12"
[GO:0009409 "response to cold" evidence=IDA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006950 "response
to stress" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0005737 GO:GO:0006355
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003677 GO:GO:0009409 GO:GO:0006351
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 eggNOG:COG1278 HOGENOM:HOG000070674 KO:K03704
OMA:AWEDEEV EMBL:D63344 EMBL:AF003591 PIR:D64840 RefSeq:NP_415510.1
RefSeq:YP_489262.1 ProteinModelPortal:P0A978 SMR:P0A978
DIP:DIP-47938N IntAct:P0A978 MINT:MINT-1247768 PRIDE:P0A978
EnsemblBacteria:EBESCT00000003528 EnsemblBacteria:EBESCT00000016965
GeneID:12931923 GeneID:945591 KEGG:ecj:Y75_p0962 KEGG:eco:b0990
PATRIC:32117205 EchoBASE:EB3993 EcoGene:EG14243
ProtClustDB:PRK09890 BioCyc:EcoCyc:G6511-MONOMER
BioCyc:ECOL316407:JW0974-MONOMER Genevestigator:P0A978
Uniprot:P0A978
Length = 70
Score = 109 (43.4 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 25/65 (38%), Positives = 43/65 (66%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 70
G+VK++++ +GFGFIT D +D+FVH ++I + N F++L + V+F+I G++
Sbjct: 7 GLVKWFNADKGFGFITPDDGSKDVFVHFTAI-QSNE---FRTLNENQKVEFSIEQGQRGP 62
Query: 71 EAINV 75
A NV
Sbjct: 63 AAANV 67
Score = 109 (43.4 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 25/65 (38%), Positives = 43/65 (66%)
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 171
G+VK++++ +GFGFIT D +D+FVH ++I + N F++L + V+F+I G++
Sbjct: 7 GLVKWFNADKGFGFITPDDGSKDVFVHFTAI-QSNE---FRTLNENQKVEFSIEQGQRGP 62
Query: 172 EAINV 176
A NV
Sbjct: 63 AAANV 67
>UNIPROTKB|C9J5V9 [details] [associations]
symbol:YBX1 "Nuclease-sensitive element-binding protein 1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0043231
"intracellular membrane-bounded organelle" evidence=IDA]
InterPro:IPR002059 Pfam:PF00313 PRINTS:PR00050 GO:GO:0043231
GO:GO:0005737 GO:GO:0006355 GO:GO:0003677 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AC098484
HOGENOM:HOG000116439 HGNC:HGNC:8014 IPI:IPI00643807
ProteinModelPortal:C9J5V9 SMR:C9J5V9 STRING:C9J5V9 PRIDE:C9J5V9
Ensembl:ENST00000332220 ArrayExpress:C9J5V9 Bgee:C9J5V9
Uniprot:C9J5V9
Length = 216
Score = 93 (37.8 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSS 40
V G VK+++ + G+GFI R D KED+FVH+ +
Sbjct: 59 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQGA 90
Score = 93 (37.8 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSS 141
V G VK+++ + G+GFI R D KED+FVH+ +
Sbjct: 59 VLGTVKWFNVRNGYGFINRNDTKEDVFVHQGA 90
Score = 68 (29.0 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 12/16 (75%), Positives = 14/16 (87%)
Query: 71 EAINVTGPNGIPVQGA 86
EA NVTGP G+PVQG+
Sbjct: 91 EAANVTGPGGVPVQGS 106
Score = 68 (29.0 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 12/16 (75%), Positives = 14/16 (87%)
Query: 172 EAINVTGPNGIPVQGA 187
EA NVTGP G+PVQG+
Sbjct: 91 EAANVTGPGGVPVQGS 106
>TIGR_CMR|SPO_2140 [details] [associations]
symbol:SPO_2140 "cold shock DNA-binding domain protein"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009409 "response to cold"
evidence=ISS] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 GO:GO:0005737 GO:GO:0006355
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003677
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 KO:K03704
RefSeq:YP_167367.1 ProteinModelPortal:Q5LRI8 GeneID:3193503
KEGG:sil:SPO2140 PATRIC:23377625 HOGENOM:HOG000139725 OMA:FIVPDNG
ProtClustDB:CLSK933775 Uniprot:Q5LRI8
Length = 175
Score = 118 (46.6 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 41/170 (24%), Positives = 72/170 (42%)
Query: 7 HTVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVG 66
+ VRG VK++D +G+GF+ + DI +H + + + EI+ G
Sbjct: 9 YKVRGRVKWFDPTKGYGFVVAEEGGPDILLHVNVLRNFGQSSVADGAAI-EIMTHRTDRG 67
Query: 67 KKDIEAINVTGPNGIPVQGAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFI 126
+ +E +++ P P +E R PA R VK++D +GFGF
Sbjct: 68 VQAVEVVSIVPPER-PETVLLSDFAEMDPEAIRAAPLEPA----R--VKWFDKGKGFGFA 120
Query: 127 TRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINV 176
+ ED+F+H +++ + L GE + + GK+ A V
Sbjct: 121 NVFGSSEDVFLH----IEVLRQSGLSDLQPGEALAMRVIDGKRGRMAAEV 166
>UNIPROTKB|E1BHM3 [details] [associations]
symbol:LIN28A "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001878
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00098 Pfam:PF00313
PRINTS:PR00050 PROSITE:PS50158 SMART:SM00343 SMART:SM00357
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
Gene3D:4.10.60.10 SUPFAM:SSF57756 GeneTree:ENSGT00390000001177
CTD:79727 OMA:GVGVCKW EMBL:DAAA02006373 IPI:IPI00718151
RefSeq:NP_001179986.1 UniGene:Bt.106487 ProteinModelPortal:E1BHM3
PRIDE:E1BHM3 Ensembl:ENSBTAT00000004196 GeneID:614997
KEGG:bta:614997 NextBio:20899397 Uniprot:E1BHM3
Length = 205
Score = 121 (47.7 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 32/87 (36%), Positives = 50/87 (57%)
Query: 112 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 164
GI K+++ + GFGF++ LD D+FVH+S K++ + F +SL GE V+F
Sbjct: 38 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQS---KLHMEGF-RSLKEGEAVEFTF 93
Query: 165 GVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP G+ G+ + P
Sbjct: 94 KKSAKGLESIRVTGPGGVFCIGSERRP 120
Score = 117 (46.2 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 30/78 (38%), Positives = 46/78 (58%)
Query: 11 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
GI K+++ + GFGF++ LD D+FVH+S K++ + F +SL GE V+F
Sbjct: 38 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQS---KLHMEGF-RSLKEGEAVEFTF 93
Query: 64 GVGKKDIEAINVTGPNGI 81
K +E+I VTGP G+
Sbjct: 94 KKSAKGLESIRVTGPGGV 111
>UNIPROTKB|B1PXG0 [details] [associations]
symbol:LIN28 "LIN28" species:9823 "Sus scrofa" [GO:0060964
"regulation of gene silencing by miRNA" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0045686
"negative regulation of glial cell differentiation" evidence=IEA]
[GO:0045666 "positive regulation of neuron differentiation"
evidence=IEA] [GO:0035198 "miRNA binding" evidence=IEA] [GO:0031369
"translation initiation factor binding" evidence=IEA] [GO:0031123
"RNA 3'-end processing" evidence=IEA] [GO:0031054 "pre-miRNA
processing" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0010587 "miRNA catabolic process" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0007281
"germ cell development" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001878 InterPro:IPR002059
InterPro:IPR011129 Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050
PROSITE:PS50158 SMART:SM00343 SMART:SM00357 GO:GO:0005730
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0003729 GO:GO:0007281 GO:GO:0045666 GO:GO:0035198
GO:GO:0000932 GO:GO:0031054 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0045727
GO:GO:0019827 GO:GO:0010494 GeneTree:ENSGT00390000001177 CTD:79727
eggNOG:NOG244191 HOGENOM:HOG000047091 HOVERGEN:HBG081922
OrthoDB:EOG4640D4 GO:GO:0010587 GO:GO:0031123 OMA:GVGVCKW
GO:GO:0045686 EMBL:FP236394 EMBL:EU503118 RefSeq:NP_001116605.1
UniGene:Ssc.70783 SMR:B1PXG0 STRING:B1PXG0
Ensembl:ENSSSCT00000003951 GeneID:100142662 KEGG:ssc:100142662
Uniprot:B1PXG0
Length = 205
Score = 121 (47.7 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 32/87 (36%), Positives = 50/87 (57%)
Query: 112 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 164
GI K+++ + GFGF++ LD D+FVH+S K++ + F +SL GE V+F
Sbjct: 38 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQS---KLHMEGF-RSLKEGEAVEFTF 93
Query: 165 GVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP G+ G+ + P
Sbjct: 94 KKSAKGLESIRVTGPGGVFCIGSERRP 120
Score = 117 (46.2 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 30/78 (38%), Positives = 46/78 (58%)
Query: 11 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
GI K+++ + GFGF++ LD D+FVH+S K++ + F +SL GE V+F
Sbjct: 38 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQS---KLHMEGF-RSLKEGEAVEFTF 93
Query: 64 GVGKKDIEAINVTGPNGI 81
K +E+I VTGP G+
Sbjct: 94 KKSAKGLESIRVTGPGGV 111
>UNIPROTKB|E2RD12 [details] [associations]
symbol:LIN28A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0060964 "regulation of gene silencing by
miRNA" evidence=IEA] [GO:0045727 "positive regulation of
translation" evidence=IEA] [GO:0045686 "negative regulation of
glial cell differentiation" evidence=IEA] [GO:0045666 "positive
regulation of neuron differentiation" evidence=IEA] [GO:0035198
"miRNA binding" evidence=IEA] [GO:0031369 "translation initiation
factor binding" evidence=IEA] [GO:0031123 "RNA 3'-end processing"
evidence=IEA] [GO:0031054 "pre-miRNA processing" evidence=IEA]
[GO:0019827 "stem cell maintenance" evidence=IEA] [GO:0010587
"miRNA catabolic process" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0007281 "germ cell development"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0003729
"mRNA binding" evidence=IEA] [GO:0000932 "cytoplasmic mRNA
processing body" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR001878 InterPro:IPR002059
InterPro:IPR011129 Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050
PROSITE:PS50158 SMART:SM00343 SMART:SM00357 GO:GO:0005730
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0003729 GO:GO:0007281 GO:GO:0045666 GO:GO:0035198
GO:GO:0000932 GO:GO:0031054 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0045727
GO:GO:0019827 GO:GO:0010494 GeneTree:ENSGT00390000001177 CTD:79727
GO:GO:0010587 GO:GO:0031123 OMA:GVGVCKW GO:GO:0045686
EMBL:AAEX03001720 RefSeq:XP_854985.1 ProteinModelPortal:E2RD12
Ensembl:ENSCAFT00000019830 GeneID:612162 KEGG:cfa:612162
NextBio:20897695 Uniprot:E2RD12
Length = 206
Score = 121 (47.7 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 32/87 (36%), Positives = 50/87 (57%)
Query: 112 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 164
GI K+++ + GFGF++ LD D+FVH+S K++ + F +SL GE V+F
Sbjct: 38 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQS---KLHMEGF-RSLKEGEAVEFTF 93
Query: 165 GVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP G+ G+ + P
Sbjct: 94 KKSAKGLESIRVTGPGGVFCIGSERRP 120
Score = 117 (46.2 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 30/78 (38%), Positives = 46/78 (58%)
Query: 11 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
GI K+++ + GFGF++ LD D+FVH+S K++ + F +SL GE V+F
Sbjct: 38 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQS---KLHMEGF-RSLKEGEAVEFTF 93
Query: 64 GVGKKDIEAINVTGPNGI 81
K +E+I VTGP G+
Sbjct: 94 KKSAKGLESIRVTGPGGV 111
>UNIPROTKB|Q9H9Z2 [details] [associations]
symbol:LIN28A "Protein lin-28 homolog A" species:9606 "Homo
sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IEA] [GO:0007281 "germ cell development"
evidence=IEA] [GO:0031369 "translation initiation factor binding"
evidence=IEA] [GO:0035198 "miRNA binding" evidence=IEA] [GO:0045666
"positive regulation of neuron differentiation" evidence=IEA]
[GO:0045686 "negative regulation of glial cell differentiation"
evidence=IEA] [GO:0045727 "positive regulation of translation"
evidence=IEA] [GO:0060964 "regulation of gene silencing by miRNA"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0010587 "miRNA catabolic process" evidence=IMP]
[GO:0019827 "stem cell maintenance" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] [GO:0031054 "pre-miRNA processing"
evidence=IMP] [GO:0031123 "RNA 3'-end processing" evidence=IMP]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=IDA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR001878 InterPro:IPR002059
InterPro:IPR011129 Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050
PROSITE:PS50158 SMART:SM00343 SMART:SM00357 GO:GO:0005634
GO:GO:0005730 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0003729 GO:GO:0003723 GO:GO:0007281
GO:GO:0045666 GO:GO:0035198 GO:GO:0000932 GO:GO:0031054
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0045727 GO:GO:0019827
GO:GO:0010494 EMBL:AL513365 CTD:79727 eggNOG:NOG244191
HOGENOM:HOG000047091 HOVERGEN:HBG081922 OrthoDB:EOG4640D4
GO:GO:0010587 GO:GO:0031123 EMBL:AF521099 EMBL:AK022519
EMBL:BC028566 IPI:IPI00002948 RefSeq:NP_078950.1 UniGene:Hs.86154
PDB:2CQF PDB:2LI8 PDBsum:2CQF PDBsum:2LI8 ProteinModelPortal:Q9H9Z2
SMR:Q9H9Z2 IntAct:Q9H9Z2 STRING:Q9H9Z2 PhosphoSite:Q9H9Z2
DMDM:74752750 PaxDb:Q9H9Z2 PRIDE:Q9H9Z2 DNASU:79727
Ensembl:ENST00000254231 Ensembl:ENST00000326279 GeneID:79727
KEGG:hsa:79727 UCSC:uc001bmj.3 GeneCards:GC01P026737
HGNC:HGNC:15986 HPA:CAB020785 MIM:611043 neXtProt:NX_Q9H9Z2
PharmGKB:PA165751523 InParanoid:Q9H9Z2 OMA:GVGVCKW PhylomeDB:Q9H9Z2
EvolutionaryTrace:Q9H9Z2 GenomeRNAi:79727 NextBio:69098 Bgee:Q9H9Z2
CleanEx:HS_LIN28 Genevestigator:Q9H9Z2 GermOnline:ENSG00000131914
GO:GO:0045686 Uniprot:Q9H9Z2
Length = 209
Score = 121 (47.7 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 32/87 (36%), Positives = 50/87 (57%)
Query: 112 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 164
GI K+++ + GFGF++ LD D+FVH+S K++ + F +SL GE V+F
Sbjct: 42 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQS---KLHMEGF-RSLKEGEAVEFTF 97
Query: 165 GVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP G+ G+ + P
Sbjct: 98 KKSAKGLESIRVTGPGGVFCIGSERRP 124
Score = 119 (46.9 bits), Expect = 7.4e-06, P = 7.4e-06
Identities = 34/91 (37%), Positives = 51/91 (56%)
Query: 11 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
GI K+++ + GFGF++ LD D+FVH+S K++ + F +SL GE V+F
Sbjct: 42 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQS---KLHMEGF-RSLKEGEAVEFTF 97
Query: 64 GVGKKDIEAINVTGPNGIPVQGA---PKSSS 91
K +E+I VTGP G+ G+ PK S
Sbjct: 98 KKSAKGLESIRVTGPGGVFCIGSERRPKGKS 128
>RGD|1566408 [details] [associations]
symbol:Lin28a "lin-28 homolog A (C. elegans)" species:10116
"Rattus norvegicus" [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA;ISO] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=ISO] [GO:0003729 "mRNA binding" evidence=IEA;ISO]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0007281 "germ cell development"
evidence=IEA;ISO] [GO:0008150 "biological_process" evidence=ND]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA;ISO] [GO:0010586 "miRNA
metabolic process" evidence=ISO] [GO:0010587 "miRNA catabolic
process" evidence=IEA;ISO] [GO:0019827 "stem cell maintenance"
evidence=IEA;ISO] [GO:0031054 "pre-miRNA processing"
evidence=IEA;ISO] [GO:0031123 "RNA 3'-end processing"
evidence=IEA;ISO] [GO:0031369 "translation initiation factor
binding" evidence=IEA;ISO] [GO:0035198 "miRNA binding"
evidence=IEA;ISO] [GO:0045666 "positive regulation of neuron
differentiation" evidence=IEA;ISO] [GO:0045686 "negative regulation
of glial cell differentiation" evidence=IEA;ISO] [GO:0045727
"positive regulation of translation" evidence=IEA;ISO] [GO:0048863
"stem cell differentiation" evidence=ISO] [GO:0060964 "regulation
of gene silencing by miRNA" evidence=IEA;ISO] InterPro:IPR001878
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00098 Pfam:PF00313
PRINTS:PR00050 PROSITE:PS50158 SMART:SM00343 SMART:SM00357
RGD:1566408 GO:GO:0005730 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0003729 GO:GO:0007281 GO:GO:0045666
GO:GO:0035198 GO:GO:0000932 GO:GO:0031054 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 Gene3D:4.10.60.10
SUPFAM:SSF57756 GO:GO:0045727 GO:GO:0019827 GO:GO:0010494
EMBL:CH473968 CTD:79727 OrthoDB:EOG4640D4 GO:GO:0010587
GO:GO:0031123 OMA:GVGVCKW GO:GO:0045686 IPI:IPI00560264
RefSeq:NP_001102739.1 UniGene:Rn.147538 Ensembl:ENSRNOT00000020641
GeneID:500562 KEGG:rno:500562 UCSC:RGD:1566408 NextBio:706580
Uniprot:D3ZZA6
Length = 209
Score = 121 (47.7 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 32/87 (36%), Positives = 50/87 (57%)
Query: 112 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 164
GI K+++ + GFGF++ LD D+FVH+S K++ + F +SL GE V+F
Sbjct: 42 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQS---KLHMEGF-RSLKEGEAVEFTF 97
Query: 165 GVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP G+ G+ + P
Sbjct: 98 KKSAKGLESIRVTGPGGVFCIGSERRP 124
Score = 119 (46.9 bits), Expect = 7.4e-06, P = 7.4e-06
Identities = 34/91 (37%), Positives = 51/91 (56%)
Query: 11 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
GI K+++ + GFGF++ LD D+FVH+S K++ + F +SL GE V+F
Sbjct: 42 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQS---KLHMEGF-RSLKEGEAVEFTF 97
Query: 64 GVGKKDIEAINVTGPNGIPVQGA---PKSSS 91
K +E+I VTGP G+ G+ PK S
Sbjct: 98 KKSAKGLESIRVTGPGGVFCIGSERRPKGKS 128
>MGI|MGI:1890546 [details] [associations]
symbol:Lin28a "lin-28 homolog A (C. elegans)" species:10090
"Mus musculus" [GO:0000932 "cytoplasmic mRNA processing body"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=ISO;IDA] [GO:0003729 "mRNA binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IGI;IMP] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISO] [GO:0010586 "miRNA metabolic process"
evidence=IDA] [GO:0010587 "miRNA catabolic process"
evidence=ISO;IMP] [GO:0019827 "stem cell maintenance" evidence=ISO]
[GO:0031047 "gene silencing by RNA" evidence=IEA] [GO:0031054
"pre-miRNA processing" evidence=ISO;IMP;IDA] [GO:0031123 "RNA
3'-end processing" evidence=ISO] [GO:0031369 "translation
initiation factor binding" evidence=IPI] [GO:0035198 "miRNA
binding" evidence=IDA] [GO:0045666 "positive regulation of neuron
differentiation" evidence=IDA] [GO:0045686 "negative regulation of
glial cell differentiation" evidence=IDA] [GO:0045727 "positive
regulation of translation" evidence=IDA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0048863 "stem cell differentiation"
evidence=IMP] [GO:0060964 "regulation of gene silencing by miRNA"
evidence=IGI] InterPro:IPR001878 InterPro:IPR002059
InterPro:IPR011129 Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050
PROSITE:PS50158 SMART:SM00343 SMART:SM00357 MGI:MGI:1890546
GO:GO:0005730 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0003729 GO:GO:0048863 GO:GO:0007281
GO:GO:0045666 GO:GO:0035198 GO:GO:0000932 GO:GO:0031054
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0045727 GO:GO:0019827
GO:GO:0010494 GO:GO:0060964 GeneTree:ENSGT00390000001177 CTD:79727
eggNOG:NOG244191 HOGENOM:HOG000047091 HOVERGEN:HBG081922
OrthoDB:EOG4640D4 GO:GO:0010587 GO:GO:0031123 OMA:GVGVCKW
GO:GO:0045686 EMBL:AF521097 EMBL:BC068304 IPI:IPI00170180
RefSeq:NP_665832.1 UniGene:Mm.302567 PDB:3TRZ PDB:3TS0 PDB:3TS2
PDBsum:3TRZ PDBsum:3TS0 PDBsum:3TS2 ProteinModelPortal:Q8K3Y3
SMR:Q8K3Y3 DIP:DIP-48573N STRING:Q8K3Y3 PhosphoSite:Q8K3Y3
PRIDE:Q8K3Y3 Ensembl:ENSMUST00000051674 GeneID:83557 KEGG:mmu:83557
UCSC:uc008vdw.1 InParanoid:Q8K3Y3 NextBio:350634 Bgee:Q8K3Y3
CleanEx:MM_LIN28 Genevestigator:Q8K3Y3
GermOnline:ENSMUSG00000050966 Uniprot:Q8K3Y3
Length = 209
Score = 121 (47.7 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 32/87 (36%), Positives = 50/87 (57%)
Query: 112 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 164
GI K+++ + GFGF++ LD D+FVH+S K++ + F +SL GE V+F
Sbjct: 42 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQS---KLHMEGF-RSLKEGEAVEFTF 97
Query: 165 GVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP G+ G+ + P
Sbjct: 98 KKSAKGLESIRVTGPGGVFCIGSERRP 124
Score = 117 (46.2 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 30/78 (38%), Positives = 46/78 (58%)
Query: 11 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
GI K+++ + GFGF++ LD D+FVH+S K++ + F +SL GE V+F
Sbjct: 42 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQS---KLHMEGF-RSLKEGEAVEFTF 97
Query: 64 GVGKKDIEAINVTGPNGI 81
K +E+I VTGP G+
Sbjct: 98 KKSAKGLESIRVTGPGGV 115
>MGI|MGI:3584032 [details] [associations]
symbol:Lin28b "lin-28 homolog B (C. elegans)" species:10090
"Mus musculus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0010587 "miRNA catabolic process" evidence=ISO]
[GO:0031047 "gene silencing by RNA" evidence=IEA] [GO:0031054
"pre-miRNA processing" evidence=ISO] [GO:0031123 "RNA 3'-end
processing" evidence=ISO] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001878 InterPro:IPR002059
InterPro:IPR011129 Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050
PROSITE:PS50158 SMART:SM00343 SMART:SM00357 MGI:MGI:3584032
GO:GO:0005739 GO:GO:0005634 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0003723 GO:GO:0031054
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 HSSP:Q9H9Z2
Gene3D:4.10.60.10 SUPFAM:SSF57756 eggNOG:COG1278 EMBL:AC153847
GeneTree:ENSGT00390000001177 HOGENOM:HOG000047091
HOVERGEN:HBG081922 OrthoDB:EOG4640D4 GO:GO:0010587 GO:GO:0031123
CTD:389421 OMA:GGHGCTS EMBL:DQ127225 EMBL:AK133928 EMBL:AK012973
EMBL:AC155715 EMBL:BC089037 IPI:IPI00380861 IPI:IPI00652406
IPI:IPI00652717 IPI:IPI00798608 RefSeq:NP_001026942.1
UniGene:Mm.440328 ProteinModelPortal:Q45KJ6 SMR:Q45KJ6
DIP:DIP-48572N STRING:Q45KJ6 PhosphoSite:Q45KJ6 PRIDE:Q45KJ6
Ensembl:ENSMUST00000079390 GeneID:380669 KEGG:mmu:380669
UCSC:uc007faa.2 UCSC:uc007fab.1 NextBio:401084 Bgee:Q45KJ6
CleanEx:MM_LIN28B Genevestigator:Q45KJ6
GermOnline:ENSMUSG00000063804 Uniprot:Q45KJ6
Length = 247
Score = 123 (48.4 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 39/115 (33%), Positives = 56/115 (48%)
Query: 85 GAPKSSS-ETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFITR-------LDNKEDIF 136
GA K E + G ++ P V G K+++ + GFGFI+ LD D+F
Sbjct: 5 GASKGEEPEKLPGLAEDE---PQVLHGTGHCKWFNVRMGFGFISMISREGNPLDIPVDVF 61
Query: 137 VHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGAPKVP 191
VH+S + F+SL GE V+F K +E+I VTGP G P G+ + P
Sbjct: 62 VHQSKLFMEG----FRSLKEGEPVEFTFKKSPKGLESIRVTGPGGSPCLGSERRP 112
Score = 116 (45.9 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 31/85 (36%), Positives = 45/85 (52%)
Query: 11 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
G K+++ + GFGFI+ LD D+FVH+S + F+SL GE V+F
Sbjct: 30 GHCKWFNVRMGFGFISMISREGNPLDIPVDVFVHQSKLFMEG----FRSLKEGEPVEFTF 85
Query: 64 GVGKKDIEAINVTGPNGIPVQGAPK 88
K +E+I VTGP G P G+ +
Sbjct: 86 KKSPKGLESIRVTGPGGSPCLGSER 110
>UNIPROTKB|F1P7H7 [details] [associations]
symbol:LIN28B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001878 InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050 PROSITE:PS50158
SMART:SM00343 SMART:SM00357 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 Gene3D:4.10.60.10 SUPFAM:SSF57756
GeneTree:ENSGT00390000001177 CTD:389421 OMA:GGHGCTS
EMBL:AAEX03008576 RefSeq:XP_539064.2 ProteinModelPortal:F1P7H7
Ensembl:ENSCAFT00000005790 GeneID:481943 KEGG:cfa:481943
Uniprot:F1P7H7
Length = 251
Score = 123 (48.4 bits), Expect = 4.1e-06, P = 4.1e-06
Identities = 37/115 (32%), Positives = 56/115 (48%)
Query: 85 GAPKSSSETVSGTYRNDSFFPAVHTVRGIVKFYDSKRGFGFITRLDNKE--------DIF 136
GA K E + + +H G K+++ + GFGFI+ + N+E D+F
Sbjct: 5 GASKGGEEPGKLPEQTEEESQILHGT-GHCKWFNVRMGFGFISMI-NREGSPLDIPVDVF 62
Query: 137 VHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGAPKVP 191
VH+S + F+SL GE V+F K +E+I VTGP G P G+ + P
Sbjct: 63 VHQSKLFMEG----FRSLKEGEPVEFTFKKSSKGLESIRVTGPGGSPCLGSERRP 113
Score = 117 (46.2 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 31/86 (36%), Positives = 47/86 (54%)
Query: 11 GIVKFYDSKRGFGFITRLDNKE--------DIFVHKSSIVKMNPKKFFQSLGLGEIVDFN 62
G K+++ + GFGFI+ + N+E D+FVH+S + F+SL GE V+F
Sbjct: 31 GHCKWFNVRMGFGFISMI-NREGSPLDIPVDVFVHQSKLFMEG----FRSLKEGEPVEFT 85
Query: 63 IGVGKKDIEAINVTGPNGIPVQGAPK 88
K +E+I VTGP G P G+ +
Sbjct: 86 FKKSSKGLESIRVTGPGGSPCLGSER 111
>UNIPROTKB|Q8AVK2 [details] [associations]
symbol:lin28b "Protein lin-28 homolog B" species:8355
"Xenopus laevis" [GO:0003723 "RNA binding" evidence=ISS]
[GO:0010587 "miRNA catabolic process" evidence=ISS] [GO:0031054
"pre-miRNA processing" evidence=ISS] [GO:0031123 "RNA 3'-end
processing" evidence=ISS] InterPro:IPR001878 InterPro:IPR002059
InterPro:IPR011129 Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050
PROSITE:PS50158 SMART:SM00343 SMART:SM00357 GO:GO:0005737
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0003723 GO:GO:0031054 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 HSSP:Q9H9Z2 Gene3D:4.10.60.10 SUPFAM:SSF57756
HOVERGEN:HBG081922 GO:GO:0010587 GO:GO:0031123 EMBL:BC042225
UniGene:Xl.23571 ProteinModelPortal:Q8AVK2 SMR:Q8AVK2
Xenbase:XB-GENE-1218973 Uniprot:Q8AVK2
Length = 252
Score = 123 (48.4 bits), Expect = 4.2e-06, P = 4.2e-06
Identities = 34/94 (36%), Positives = 50/94 (53%)
Query: 105 PAVHTVRGIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLG 157
P V G K+++ + GFGFI+ L+N D+FVH+S + M+ F+SL G
Sbjct: 28 PQVLLGSGHCKWFNVRMGFGFISMTSREGSPLENPVDVFVHQSKLY-MDG---FRSLKEG 83
Query: 158 EIVDFNIGVGKKDIEAINVTGPNGIPVQGAPKVP 191
E V+F K E++ VTGP G P G+ + P
Sbjct: 84 EPVEFTFKKSSKGFESLRVTGPGGNPCLGSERRP 117
Score = 118 (46.6 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 33/92 (35%), Positives = 51/92 (55%)
Query: 11 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
G K+++ + GFGFI+ L+N D+FVH+S + M+ F+SL GE V+F
Sbjct: 35 GHCKWFNVRMGFGFISMTSREGSPLENPVDVFVHQSKLY-MDG---FRSLKEGEPVEFTF 90
Query: 64 GVGKKDIEAINVTGPNGIPVQGAPKS-SSETV 94
K E++ VTGP G P G+ + ++TV
Sbjct: 91 KKSSKGFESLRVTGPGGNPCLGSERRPKAKTV 122
>UNIPROTKB|Q9KL16 [details] [associations]
symbol:cspV "Cold shock protein CspV" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] InterPro:IPR002059
InterPro:IPR011129 InterPro:IPR012156 Pfam:PF00313
PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357 GO:GO:0005737
GO:GO:0006355 GO:GO:0003677 GO:GO:0009409 GO:GO:0006351
EMBL:AE003853 GenomeReviews:AE003853_GR Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 eggNOG:COG1278 KO:K03704
OMA:LNIKGHY EMBL:AF409091 PIR:E82399 RefSeq:NP_233318.1
ProteinModelPortal:Q9KL16 SMR:Q9KL16 DNASU:2612854 GeneID:2612854
KEGG:vch:VCA0933 PATRIC:20086396 ProtClustDB:CLSK2748081
Uniprot:Q9KL16
Length = 70
Score = 107 (42.7 bits), Expect = 4.6e-06, P = 4.6e-06
Identities = 25/65 (38%), Positives = 40/65 (61%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 70
G VK+++ +GFGF+T+ + D+FVH +SI + F++L G+ V F + GKK
Sbjct: 7 GSVKWFNETKGFGFLTQDNGGNDVFVHFNSI----QSEGFKTLAEGQRVSFIVEQGKKGP 62
Query: 71 EAINV 75
+A NV
Sbjct: 63 QASNV 67
Score = 107 (42.7 bits), Expect = 4.6e-06, P = 4.6e-06
Identities = 25/65 (38%), Positives = 40/65 (61%)
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 171
G VK+++ +GFGF+T+ + D+FVH +SI + F++L G+ V F + GKK
Sbjct: 7 GSVKWFNETKGFGFLTQDNGGNDVFVHFNSI----QSEGFKTLAEGQRVSFIVEQGKKGP 62
Query: 172 EAINV 176
+A NV
Sbjct: 63 QASNV 67
>TIGR_CMR|VC_A0933 [details] [associations]
symbol:VC_A0933 "cold shock domain family protein"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] InterPro:IPR002059
InterPro:IPR011129 InterPro:IPR012156 Pfam:PF00313
PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357 GO:GO:0005737
GO:GO:0006355 GO:GO:0003677 GO:GO:0009409 GO:GO:0006351
EMBL:AE003853 GenomeReviews:AE003853_GR Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 eggNOG:COG1278 KO:K03704
OMA:LNIKGHY EMBL:AF409091 PIR:E82399 RefSeq:NP_233318.1
ProteinModelPortal:Q9KL16 SMR:Q9KL16 DNASU:2612854 GeneID:2612854
KEGG:vch:VCA0933 PATRIC:20086396 ProtClustDB:CLSK2748081
Uniprot:Q9KL16
Length = 70
Score = 107 (42.7 bits), Expect = 4.6e-06, P = 4.6e-06
Identities = 25/65 (38%), Positives = 40/65 (61%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 70
G VK+++ +GFGF+T+ + D+FVH +SI + F++L G+ V F + GKK
Sbjct: 7 GSVKWFNETKGFGFLTQDNGGNDVFVHFNSI----QSEGFKTLAEGQRVSFIVEQGKKGP 62
Query: 71 EAINV 75
+A NV
Sbjct: 63 QASNV 67
Score = 107 (42.7 bits), Expect = 4.6e-06, P = 4.6e-06
Identities = 25/65 (38%), Positives = 40/65 (61%)
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 171
G VK+++ +GFGF+T+ + D+FVH +SI + F++L G+ V F + GKK
Sbjct: 7 GSVKWFNETKGFGFLTQDNGGNDVFVHFNSI----QSEGFKTLAEGQRVSFIVEQGKKGP 62
Query: 172 EAINV 176
+A NV
Sbjct: 63 QASNV 67
>TIGR_CMR|BA_5424 [details] [associations]
symbol:BA_5424 "cold shock protein CspC" species:198094
"Bacillus anthracis str. Ames" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009409 "response to cold"
evidence=ISS] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0005737 GO:GO:0006355
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0006351 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 eggNOG:COG1278 HOGENOM:HOG000070674 KO:K03704
RefSeq:NP_847592.1 RefSeq:YP_022086.2 RefSeq:YP_031279.1
ProteinModelPortal:P62169 SMR:P62169 DNASU:1085020
EnsemblBacteria:EBBACT00000012131 EnsemblBacteria:EBBACT00000018032
EnsemblBacteria:EBBACT00000022166 GeneID:1085020 GeneID:2818619
GeneID:2851935 KEGG:ban:BA_5424 KEGG:bar:GBAA_5424 KEGG:bat:BAS5040
OMA:WTKRTTI ProtClustDB:CLSK873658
BioCyc:BANT260799:GJAJ-5115-MONOMER
BioCyc:BANT261594:GJ7F-5291-MONOMER Uniprot:P62169
Length = 65
Score = 106 (42.4 bits), Expect = 6.1e-06, P = 6.1e-06
Identities = 26/67 (38%), Positives = 45/67 (67%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
++G VK++++++GFGFI R D +D+FVH S+I + ++SL G+ V+F+I G +
Sbjct: 1 MQGRVKWFNAEKGFGFIEREDG-DDVFVHFSAIQQDG----YKSLEEGQQVEFDIVDGAR 55
Query: 69 DIEAINV 75
+A NV
Sbjct: 56 GPQAANV 62
Score = 106 (42.4 bits), Expect = 6.1e-06, P = 6.1e-06
Identities = 26/67 (38%), Positives = 45/67 (67%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
++G VK++++++GFGFI R D +D+FVH S+I + ++SL G+ V+F+I G +
Sbjct: 1 MQGRVKWFNAEKGFGFIEREDG-DDVFVHFSAIQQDG----YKSLEEGQQVEFDIVDGAR 55
Query: 170 DIEAINV 176
+A NV
Sbjct: 56 GPQAANV 62
>TIGR_CMR|SO_2787 [details] [associations]
symbol:SO_2787 "cold shock domain family protein"
species:211586 "Shewanella oneidensis MR-1" [GO:0003677 "DNA
binding" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009409 "response to cold"
evidence=ISS] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0005737 GO:GO:0006355
GO:GO:0003677 EMBL:AE014299 GenomeReviews:AE014299_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 HOGENOM:HOG000070674 KO:K03704 HSSP:P41016
RefSeq:NP_718365.1 ProteinModelPortal:Q8EDG5 SMR:Q8EDG5
GeneID:1170487 KEGG:son:SO_2787 PATRIC:23525209 OMA:FRAIQGN
ProtClustDB:CLSK906860 Uniprot:Q8EDG5
Length = 69
Score = 106 (42.4 bits), Expect = 6.1e-06, P = 6.1e-06
Identities = 27/68 (39%), Positives = 43/68 (63%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G+VK+++S +GFGFI + ++ D+FVH +I N F ++L G+ V F + G+K
Sbjct: 4 VTGVVKWFNSDKGFGFIEQ-ESGPDVFVHFRAI---NSDGF-KTLDEGQKVSFTVTQGQK 58
Query: 69 DIEAINVT 76
+A NVT
Sbjct: 59 GPQAENVT 66
Score = 106 (42.4 bits), Expect = 6.1e-06, P = 6.1e-06
Identities = 27/68 (39%), Positives = 43/68 (63%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G+VK+++S +GFGFI + ++ D+FVH +I N F ++L G+ V F + G+K
Sbjct: 4 VTGVVKWFNSDKGFGFIEQ-ESGPDVFVHFRAI---NSDGF-KTLDEGQKVSFTVTQGQK 58
Query: 170 DIEAINVT 177
+A NVT
Sbjct: 59 GPQAENVT 66
>TAIR|locus:2135139 [details] [associations]
symbol:CSDP1 "cold shock domain protein 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009409 "response
to cold" evidence=IGI;IEP] [GO:0003690 "double-stranded DNA
binding" evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0009414
"response to water deprivation" evidence=IEP] [GO:0009651 "response
to salt stress" evidence=IEP] [GO:0010501 "RNA secondary structure
unwinding" evidence=IDA] [GO:0032508 "DNA duplex unwinding"
evidence=IDA] [GO:0009631 "cold acclimation" evidence=IGI]
[GO:0009165 "nucleotide biosynthetic process" evidence=RCA]
InterPro:IPR001878 InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050 PROSITE:PS50158
SMART:SM00343 SMART:SM00357 Prosite:PS00352 GO:GO:0005634
GO:GO:0005737 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006355
GO:GO:0046872 GO:GO:0009651 GO:GO:0009414 GO:GO:0008270
GO:GO:0009631 GO:GO:0003723 EMBL:AL161588 GO:GO:0003690
GO:GO:0003697 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
Gene3D:4.10.60.10 SUPFAM:SSF57756 EMBL:AL022373
HOGENOM:HOG000186262 KO:K09250 InterPro:IPR019844 GO:GO:0010501
EMBL:AK226815 IPI:IPI00525206 PIR:T05494 RefSeq:NP_195326.1
UniGene:At.23073 HSSP:P15277 ProteinModelPortal:O65639 SMR:O65639
STRING:O65639 PaxDb:O65639 PRIDE:O65639 EnsemblPlants:AT4G36020.1
GeneID:829758 KEGG:ath:AT4G36020 TAIR:At4g36020 eggNOG:COG1278
InParanoid:O65639 OMA:GRACYNC PhylomeDB:O65639
ProtClustDB:CLSN2685328 Genevestigator:O65639 GO:GO:0032508
Uniprot:O65639
Length = 299
Score = 123 (48.4 bits), Expect = 6.5e-06, P = 6.5e-06
Identities = 28/71 (39%), Positives = 44/71 (61%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD- 69
G V ++++ +G+GFIT D ++FVH+SSIV ++SL +G+ V+F I G
Sbjct: 13 GKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEG----YRSLTVGDAVEFAITQGSDGK 68
Query: 70 IEAINVTGPNG 80
+A+NVT P G
Sbjct: 69 TKAVNVTAPGG 79
Score = 123 (48.4 bits), Expect = 6.5e-06, P = 6.5e-06
Identities = 28/71 (39%), Positives = 44/71 (61%)
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD- 170
G V ++++ +G+GFIT D ++FVH+SSIV ++SL +G+ V+F I G
Sbjct: 13 GKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEG----YRSLTVGDAVEFAITQGSDGK 68
Query: 171 IEAINVTGPNG 181
+A+NVT P G
Sbjct: 69 TKAVNVTAPGG 79
>UNIPROTKB|Q6ZN17 [details] [associations]
symbol:LIN28B "Protein lin-28 homolog B" species:9606 "Homo
sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IDA] [GO:0031054 "pre-miRNA processing"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0031123 "RNA 3'-end processing" evidence=IMP] [GO:0010587
"miRNA catabolic process" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005739 "mitochondrion" evidence=IDA]
InterPro:IPR001878 InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050 PROSITE:PS50158
SMART:SM00343 SMART:SM00357 GO:GO:0005739 GO:GO:0005634
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 EMBL:CH471051
GO:GO:0008270 GO:GO:0003723 GO:GO:0031054 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 Gene3D:4.10.60.10
SUPFAM:SSF57756 eggNOG:COG1278 HOGENOM:HOG000047091
HOVERGEN:HBG081922 OrthoDB:EOG4640D4 GO:GO:0010587 GO:GO:0031123
CTD:389421 OMA:GGHGCTS EMBL:DQ127228 EMBL:AK131411 EMBL:Z95329
EMBL:AL135911 EMBL:BC127712 EMBL:BC127713 EMBL:BC137526
EMBL:BC137527 EMBL:BC141960 IPI:IPI00398131 IPI:IPI00854717
RefSeq:NP_001004317.1 UniGene:Hs.23616 PDB:4A4I PDBsum:4A4I
ProteinModelPortal:Q6ZN17 SMR:Q6ZN17 IntAct:Q6ZN17 STRING:Q6ZN17
PhosphoSite:Q6ZN17 DMDM:74758701 PaxDb:Q6ZN17 PeptideAtlas:Q6ZN17
PRIDE:Q6ZN17 Ensembl:ENST00000345080 GeneID:389421 KEGG:hsa:389421
UCSC:uc003pqv.1 GeneCards:GC06P105404 HGNC:HGNC:32207 HPA:HPA036630
MIM:611044 neXtProt:NX_Q6ZN17 PharmGKB:PA142671543
InParanoid:Q6ZN17 PhylomeDB:Q6ZN17 GenomeRNAi:389421 NextBio:102860
ArrayExpress:Q6ZN17 Bgee:Q6ZN17 CleanEx:HS_LIN28B
Genevestigator:Q6ZN17 GermOnline:ENSG00000187772 Uniprot:Q6ZN17
Length = 250
Score = 121 (47.7 bits), Expect = 7.4e-06, P = 7.4e-06
Identities = 32/88 (36%), Positives = 48/88 (54%)
Query: 112 GIVKFYDSKRGFGFITRLDNKE--------DIFVHKSSIVKMNPKKFFQSLGLGEIVDFN 163
G K+++ + GFGFI+ + N+E D+FVH+S + F+SL GE V+F
Sbjct: 32 GHCKWFNVRMGFGFISMI-NREGSPLDIPVDVFVHQSKLFMEG----FRSLKEGEPVEFT 86
Query: 164 IGVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP G P G+ + P
Sbjct: 87 FKKSSKGLESIRVTGPGGSPCLGSERRP 114
Score = 117 (46.2 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 31/86 (36%), Positives = 47/86 (54%)
Query: 11 GIVKFYDSKRGFGFITRLDNKE--------DIFVHKSSIVKMNPKKFFQSLGLGEIVDFN 62
G K+++ + GFGFI+ + N+E D+FVH+S + F+SL GE V+F
Sbjct: 32 GHCKWFNVRMGFGFISMI-NREGSPLDIPVDVFVHQSKLFMEG----FRSLKEGEPVEFT 86
Query: 63 IGVGKKDIEAINVTGPNGIPVQGAPK 88
K +E+I VTGP G P G+ +
Sbjct: 87 FKKSSKGLESIRVTGPGGSPCLGSER 112
>UNIPROTKB|Q45KJ4 [details] [associations]
symbol:LIN28B "Protein lin-28 homolog B" species:9031
"Gallus gallus" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0031054 "pre-miRNA
processing" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0010587 "miRNA catabolic process" evidence=ISS]
[GO:0031123 "RNA 3'-end processing" evidence=ISS]
InterPro:IPR001878 InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050 PROSITE:PS50158
SMART:SM00343 SMART:SM00357 GO:GO:0005739 GO:GO:0005634
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0003723 GO:GO:0031054 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 HSSP:Q9H9Z2 Gene3D:4.10.60.10 SUPFAM:SSF57756
eggNOG:COG1278 GeneTree:ENSGT00390000001177 HOGENOM:HOG000047091
HOVERGEN:HBG081922 OrthoDB:EOG4640D4 GO:GO:0010587 GO:GO:0031123
EMBL:DQ127227 IPI:IPI00655492 RefSeq:NP_001029990.1
UniGene:Gga.14055 ProteinModelPortal:Q45KJ4 SMR:Q45KJ4
Ensembl:ENSGALT00000024860 GeneID:421786 KEGG:gga:421786 CTD:389421
InParanoid:Q45KJ4 OMA:GGHGCTS NextBio:20824507 Uniprot:Q45KJ4
Length = 250
Score = 121 (47.7 bits), Expect = 7.4e-06, P = 7.4e-06
Identities = 37/115 (32%), Positives = 55/115 (47%)
Query: 85 GAPKSSSETVS-GTYRNDSFFPAVHTVRGIVKFYDSKRGFGFITR-------LDNKEDIF 136
GA K E + + P H G K+++ + GFGFI+ L++ D+F
Sbjct: 5 GASKGGEEPGRLPEHEEEEESPLWHGA-GHCKWFNVRMGFGFISMSSREGSPLESPVDVF 63
Query: 137 VHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGAPKVP 191
VH+S + F+SL GE V+F K +E+I VTGP G P G+ + P
Sbjct: 64 VHQSKLYMEG----FRSLKEGEPVEFTYKKSSKGLESIRVTGPGGSPCLGSERRP 114
Score = 116 (45.9 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 30/85 (35%), Positives = 46/85 (54%)
Query: 11 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
G K+++ + GFGFI+ L++ D+FVH+S + F+SL GE V+F
Sbjct: 32 GHCKWFNVRMGFGFISMSSREGSPLESPVDVFVHQSKLYMEG----FRSLKEGEPVEFTY 87
Query: 64 GVGKKDIEAINVTGPNGIPVQGAPK 88
K +E+I VTGP G P G+ +
Sbjct: 88 KKSSKGLESIRVTGPGGSPCLGSER 112
>UNIPROTKB|F1RYQ5 [details] [associations]
symbol:F1RYQ5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0031123 "RNA 3'-end processing" evidence=IEA]
[GO:0031054 "pre-miRNA processing" evidence=IEA] [GO:0010587 "miRNA
catabolic process" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001878 InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00313 PRINTS:PR00050 PROSITE:PS50158 SMART:SM00343
SMART:SM00357 GO:GO:0005739 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0008270 GO:GO:0003723 GO:GO:0031054
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
Gene3D:4.10.60.10 SUPFAM:SSF57756 GeneTree:ENSGT00390000001177
GO:GO:0010587 GO:GO:0031123 OMA:GGHGCTS EMBL:CU407220 EMBL:CU074276
EMBL:JF913470 Ensembl:ENSSSCT00000004824 Uniprot:F1RYQ5
Length = 263
Score = 121 (47.7 bits), Expect = 8.5e-06, P = 8.5e-06
Identities = 32/87 (36%), Positives = 46/87 (52%)
Query: 112 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 164
G K+++ + GFGFI+ LD D+FVH+S + F+SL GE V+F
Sbjct: 45 GHCKWFNVRMGFGFISMISREGSPLDIPVDVFVHQSKLFMEG----FRSLKEGEPVEFTF 100
Query: 165 GVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP G P G+ + P
Sbjct: 101 KKSSKGLESIRVTGPGGSPCLGSERRP 127
Score = 117 (46.2 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 31/85 (36%), Positives = 45/85 (52%)
Query: 11 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
G K+++ + GFGFI+ LD D+FVH+S + F+SL GE V+F
Sbjct: 45 GHCKWFNVRMGFGFISMISREGSPLDIPVDVFVHQSKLFMEG----FRSLKEGEPVEFTF 100
Query: 64 GVGKKDIEAINVTGPNGIPVQGAPK 88
K +E+I VTGP G P G+ +
Sbjct: 101 KKSSKGLESIRVTGPGGSPCLGSER 125
>TIGR_CMR|CHY_0157 [details] [associations]
symbol:CHY_0157 "cold shock protein CspC" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003677 "DNA
binding" evidence=ISS] [GO:0009409 "response to cold" evidence=ISS]
InterPro:IPR002059 InterPro:IPR011129 InterPro:IPR012156
Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 GO:GO:0005737 GO:GO:0006355 GO:GO:0003677
EMBL:CP000141 GenomeReviews:CP000141_GR Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR019844
eggNOG:COG1278 HOGENOM:HOG000070674 OMA:WTKRTTI RefSeq:YP_359029.1
ProteinModelPortal:Q3AFQ5 SMR:Q3AFQ5 STRING:Q3AFQ5 GeneID:3727298
KEGG:chy:CHY_0157 PATRIC:21273501 ProtClustDB:CLSK742705
BioCyc:CHYD246194:GJCN-157-MONOMER Uniprot:Q3AFQ5
Length = 65
Score = 104 (41.7 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 28/67 (41%), Positives = 43/67 (64%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
++G VK++D +G+GFI R D D+FVH S+I K N F++L G+ V+FNI G +
Sbjct: 1 MQGKVKWFDPAKGYGFIEREDGG-DVFVHFSAI-KGNG---FKTLEEGQRVEFNIVEGTR 55
Query: 69 DIEAINV 75
+A +V
Sbjct: 56 GPQAADV 62
Score = 104 (41.7 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 28/67 (41%), Positives = 43/67 (64%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
++G VK++D +G+GFI R D D+FVH S+I K N F++L G+ V+FNI G +
Sbjct: 1 MQGKVKWFDPAKGYGFIEREDGG-DVFVHFSAI-KGNG---FKTLEEGQRVEFNIVEGTR 55
Query: 170 DIEAINV 176
+A +V
Sbjct: 56 GPQAADV 62
>UNIPROTKB|D4A0Q1 [details] [associations]
symbol:Lin28b "Protein Lin28b" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001878
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00098 Pfam:PF00313
PRINTS:PR00050 PROSITE:PS50158 SMART:SM00343 SMART:SM00357
RGD:1597432 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
Gene3D:4.10.60.10 SUPFAM:SSF57756 GeneTree:ENSGT00390000001177
CTD:389421 IPI:IPI00951319 RefSeq:XP_002725926.1
RefSeq:XP_002729027.1 Ensembl:ENSRNOT00000064466 GeneID:689054
KEGG:rno:689054 NextBio:737812 Uniprot:D4A0Q1
Length = 247
Score = 119 (46.9 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 32/87 (36%), Positives = 46/87 (52%)
Query: 112 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 164
G K+++ + GFGFI+ LD D+FVH+S + F+SL GE V+F
Sbjct: 30 GHCKWFNVRMGFGFISMISREGNPLDIPVDVFVHQSKLFMEG----FRSLKEGEPVEFTF 85
Query: 165 GVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E+I VTGP G P G+ + P
Sbjct: 86 KKSPKGLESIRVTGPGGNPCLGSERRP 112
Score = 115 (45.5 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 31/85 (36%), Positives = 45/85 (52%)
Query: 11 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
G K+++ + GFGFI+ LD D+FVH+S + F+SL GE V+F
Sbjct: 30 GHCKWFNVRMGFGFISMISREGNPLDIPVDVFVHQSKLFMEG----FRSLKEGEPVEFTF 85
Query: 64 GVGKKDIEAINVTGPNGIPVQGAPK 88
K +E+I VTGP G P G+ +
Sbjct: 86 KKSPKGLESIRVTGPGGNPCLGSER 110
>TIGR_CMR|BA_2422 [details] [associations]
symbol:BA_2422 "cold shock protein CspA" species:198094
"Bacillus anthracis str. Ames" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009409 "response to cold"
evidence=ISS] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0005737 GO:GO:0006355
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0006351 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 eggNOG:COG1278 HOGENOM:HOG000070674 KO:K03704
RefSeq:NP_844799.1 RefSeq:YP_019064.1 RefSeq:YP_028518.1
ProteinModelPortal:Q81QK2 SMR:Q81QK2 DNASU:1086343
EnsemblBacteria:EBBACT00000011610 EnsemblBacteria:EBBACT00000017774
EnsemblBacteria:EBBACT00000021660 GeneID:1086343 GeneID:2816216
GeneID:2851992 KEGG:ban:BA_2422 KEGG:bar:GBAA_2422 KEGG:bat:BAS2257
OMA:ASESVHI ProtClustDB:CLSK916624
BioCyc:BANT260799:GJAJ-2323-MONOMER
BioCyc:BANT261594:GJ7F-2403-MONOMER Uniprot:Q81QK2
Length = 67
Score = 103 (41.3 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 26/68 (38%), Positives = 41/68 (60%)
Query: 8 TVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGK 67
T+ G VK+++S++GFGFI ++ D+FVH S+I F+SL G+ V F + G
Sbjct: 2 TLTGKVKWFNSEKGFGFI-EVEGGNDVFVHFSAITGDG----FKSLDEGQEVSFEVEDGN 56
Query: 68 KDIEAINV 75
+ +A NV
Sbjct: 57 RGPQAKNV 64
Score = 103 (41.3 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 26/68 (38%), Positives = 41/68 (60%)
Query: 109 TVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGK 168
T+ G VK+++S++GFGFI ++ D+FVH S+I F+SL G+ V F + G
Sbjct: 2 TLTGKVKWFNSEKGFGFI-EVEGGNDVFVHFSAITGDG----FKSLDEGQEVSFEVEDGN 56
Query: 169 KDIEAINV 176
+ +A NV
Sbjct: 57 RGPQAKNV 64
>UNIPROTKB|Q47VJ5 [details] [associations]
symbol:CPS_4529 "Cold-shock DNA-binding domain family
protein" species:167879 "Colwellia psychrerythraea 34H" [GO:0003677
"DNA binding" evidence=ISS] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050
SMART:SM00357 GO:GO:0005737 GO:GO:0006355 GO:GO:0003677
EMBL:CP000083 GenomeReviews:CP000083_GR Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 eggNOG:COG1278
HOGENOM:HOG000070674 KO:K03704 RefSeq:YP_271177.1
ProteinModelPortal:Q47VJ5 SMR:Q47VJ5 GeneID:3518971
KEGG:cps:CPS_4529 PATRIC:21471883 OMA:ETEGQDI
ProtClustDB:CLSK757227 BioCyc:CPSY167879:GI48-4538-MONOMER
Uniprot:Q47VJ5
Length = 68
Score = 102 (41.0 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 24/68 (35%), Positives = 41/68 (60%)
Query: 8 TVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGK 67
T G VK+++ +GFGFI + +N D+F H ++IV F++L G+ V+F + G+
Sbjct: 3 TTTGTVKWFNEAKGFGFIEQ-ENGPDVFAHFNAIVGDG----FKTLAEGQKVEFTVTDGQ 57
Query: 68 KDIEAINV 75
K +A N+
Sbjct: 58 KGPQAENI 65
Score = 102 (41.0 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 24/68 (35%), Positives = 41/68 (60%)
Query: 109 TVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGK 168
T G VK+++ +GFGFI + +N D+F H ++IV F++L G+ V+F + G+
Sbjct: 3 TTTGTVKWFNEAKGFGFIEQ-ENGPDVFAHFNAIVGDG----FKTLAEGQKVEFTVTDGQ 57
Query: 169 KDIEAINV 176
K +A N+
Sbjct: 58 KGPQAENI 65
>TIGR_CMR|BA_5115 [details] [associations]
symbol:BA_5115 "cold shock protein CspD" species:198094
"Bacillus anthracis str. Ames" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009409 "response to cold"
evidence=ISS] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0005737 GO:GO:0006355
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0006351 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 eggNOG:COG1278 KO:K03704 RefSeq:NP_847301.1
RefSeq:YP_021768.1 RefSeq:YP_030998.1 ProteinModelPortal:Q81K90
SMR:Q81K90 DNASU:1084426 EnsemblBacteria:EBBACT00000008459
EnsemblBacteria:EBBACT00000015452 EnsemblBacteria:EBBACT00000020851
GeneID:1084426 GeneID:2816754 GeneID:2848947 KEGG:ban:BA_5115
KEGG:bar:GBAA_5115 KEGG:bat:BAS4754 HOGENOM:HOG000070673
OMA:IQSNNFK ProtClustDB:CLSK917532
BioCyc:BANT260799:GJAJ-4808-MONOMER
BioCyc:BANT261594:GJ7F-4967-MONOMER Uniprot:Q81K90
Length = 66
Score = 102 (41.0 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 26/66 (39%), Positives = 41/66 (62%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 70
G VK+++S++GFGFI ++ +D+FVH S+I F++L G+ V F I G +
Sbjct: 4 GKVKWFNSEKGFGFI-EVEGGDDVFVHFSAIQGDG----FKTLEEGQEVSFEIVEGNRGP 58
Query: 71 EAINVT 76
+A NVT
Sbjct: 59 QAANVT 64
Score = 102 (41.0 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 26/66 (39%), Positives = 41/66 (62%)
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 171
G VK+++S++GFGFI ++ +D+FVH S+I F++L G+ V F I G +
Sbjct: 4 GKVKWFNSEKGFGFI-EVEGGDDVFVHFSAIQGDG----FKTLEEGQEVSFEIVEGNRGP 58
Query: 172 EAINVT 177
+A NVT
Sbjct: 59 QAANVT 64
>TIGR_CMR|CPS_4529 [details] [associations]
symbol:CPS_4529 "cold shock protein cspV" species:167879
"Colwellia psychrerythraea 34H" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009409 "response to cold"
evidence=ISS] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050
SMART:SM00357 GO:GO:0005737 GO:GO:0006355 GO:GO:0003677
EMBL:CP000083 GenomeReviews:CP000083_GR Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 eggNOG:COG1278
HOGENOM:HOG000070674 KO:K03704 RefSeq:YP_271177.1
ProteinModelPortal:Q47VJ5 SMR:Q47VJ5 GeneID:3518971
KEGG:cps:CPS_4529 PATRIC:21471883 OMA:ETEGQDI
ProtClustDB:CLSK757227 BioCyc:CPSY167879:GI48-4538-MONOMER
Uniprot:Q47VJ5
Length = 68
Score = 102 (41.0 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 24/68 (35%), Positives = 41/68 (60%)
Query: 8 TVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGK 67
T G VK+++ +GFGFI + +N D+F H ++IV F++L G+ V+F + G+
Sbjct: 3 TTTGTVKWFNEAKGFGFIEQ-ENGPDVFAHFNAIVGDG----FKTLAEGQKVEFTVTDGQ 57
Query: 68 KDIEAINV 75
K +A N+
Sbjct: 58 KGPQAENI 65
Score = 102 (41.0 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 24/68 (35%), Positives = 41/68 (60%)
Query: 109 TVRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGK 168
T G VK+++ +GFGFI + +N D+F H ++IV F++L G+ V+F + G+
Sbjct: 3 TTTGTVKWFNEAKGFGFIEQ-ENGPDVFAHFNAIVGDG----FKTLAEGQKVEFTVTDGQ 57
Query: 169 KDIEAINV 176
K +A N+
Sbjct: 58 KGPQAENI 65
>TIGR_CMR|BA_3594 [details] [associations]
symbol:BA_3594 "cold shock protein CspB" species:198094
"Bacillus anthracis str. Ames" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009409 "response to cold"
evidence=ISS] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0005737 GO:GO:0006355
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 KO:K03704 OMA:AHFRQIT HOGENOM:HOG000070673
HSSP:P41016 RefSeq:NP_845864.1 RefSeq:YP_020229.1
RefSeq:YP_029590.1 ProteinModelPortal:Q81YF5 SMR:Q81YF5
DNASU:1086356 EnsemblBacteria:EBBACT00000010475
EnsemblBacteria:EBBACT00000015696 EnsemblBacteria:EBBACT00000021214
GeneID:1086356 GeneID:2816334 GeneID:2852892 KEGG:ban:BA_3594
KEGG:bar:GBAA_3594 KEGG:bat:BAS3333 ProtClustDB:CLSK917095
BioCyc:BANT260799:GJAJ-3395-MONOMER
BioCyc:BANT261594:GJ7F-3504-MONOMER Uniprot:Q81YF5
Length = 66
Score = 101 (40.6 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 25/65 (38%), Positives = 41/65 (63%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 70
G VK+++S++GFGFI ++ ED+FVH S+I + F++L G+ V F + G +
Sbjct: 4 GKVKWFNSEKGFGFI-EVEGGEDVFVHFSAI----QGEGFKTLEEGQEVTFEVEQGNRGP 58
Query: 71 EAINV 75
+A NV
Sbjct: 59 QATNV 63
Score = 101 (40.6 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 25/65 (38%), Positives = 41/65 (63%)
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 171
G VK+++S++GFGFI ++ ED+FVH S+I + F++L G+ V F + G +
Sbjct: 4 GKVKWFNSEKGFGFI-EVEGGEDVFVHFSAI----QGEGFKTLEEGQEVTFEVEQGNRGP 58
Query: 172 EAINV 176
+A NV
Sbjct: 59 QATNV 63
>TIGR_CMR|SPO_3625 [details] [associations]
symbol:SPO_3625 "cold shock protein CspA" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003677 "DNA binding" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0009409 "response to cold" evidence=ISS]
InterPro:IPR002059 InterPro:IPR011129 InterPro:IPR012156
Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 GO:GO:0005737 GO:GO:0006355 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003677 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR019844 KO:K03704
HOGENOM:HOG000070673 RefSeq:YP_168819.1 ProteinModelPortal:Q5LMD9
SMR:Q5LMD9 GeneID:3195668 KEGG:sil:SPO3625 PATRIC:23380729
OMA:TMDGFKT Uniprot:Q5LMD9
Length = 68
Score = 100 (40.3 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 25/66 (37%), Positives = 39/66 (59%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 70
G VK+++S++GFGFI +D+FVH S++ + Q L G+ V F+I G+
Sbjct: 4 GTVKWFNSQKGFGFIAPEQGSKDVFVHISALERSG----IQKLDDGQAVTFDIESGRDGR 59
Query: 71 E-AINV 75
E AIN+
Sbjct: 60 ESAINL 65
Score = 100 (40.3 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 25/66 (37%), Positives = 39/66 (59%)
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 171
G VK+++S++GFGFI +D+FVH S++ + Q L G+ V F+I G+
Sbjct: 4 GTVKWFNSQKGFGFIAPEQGSKDVFVHISALERSG----IQKLDDGQAVTFDIESGRDGR 59
Query: 172 E-AINV 176
E AIN+
Sbjct: 60 ESAINL 65
>TIGR_CMR|BA_1629 [details] [associations]
symbol:BA_1629 "cold shock protein CspB" species:198094
"Bacillus anthracis str. Ames" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009409 "response to cold"
evidence=ISS] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0005737 GO:GO:0006355
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 HOGENOM:HOG000070674 KO:K03704 OMA:ANVFRRN
HSSP:P41016 RefSeq:NP_844076.1 RefSeq:YP_018263.1
RefSeq:YP_027779.1 ProteinModelPortal:Q81SL9 SMR:Q81SL9
DNASU:1086132 EnsemblBacteria:EBBACT00000009010
EnsemblBacteria:EBBACT00000014540 EnsemblBacteria:EBBACT00000022883
GeneID:1086132 GeneID:2816052 GeneID:2848926 KEGG:ban:BA_1629
KEGG:bar:GBAA_1629 KEGG:bat:BAS1512 ProtClustDB:CLSK916304
BioCyc:BANT260799:GJAJ-1584-MONOMER
BioCyc:BANT261594:GJ7F-1650-MONOMER Uniprot:Q81SL9
Length = 65
Score = 99 (39.9 bits), Expect = 4.0e-05, P = 4.0e-05
Identities = 23/67 (34%), Positives = 44/67 (65%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
++G VK++++++GFGFI ++ +D+FVH S+I + +++L G+ V F+I G +
Sbjct: 1 MQGKVKWFNNEKGFGFI-EMEGADDVFVHFSAI----QGEGYKALEEGQEVSFDITEGNR 55
Query: 69 DIEAINV 75
+A NV
Sbjct: 56 GPQAANV 62
Score = 99 (39.9 bits), Expect = 4.0e-05, P = 4.0e-05
Identities = 23/67 (34%), Positives = 44/67 (65%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
++G VK++++++GFGFI ++ +D+FVH S+I + +++L G+ V F+I G +
Sbjct: 1 MQGKVKWFNNEKGFGFI-EMEGADDVFVHFSAI----QGEGYKALEEGQEVSFDITEGNR 55
Query: 170 DIEAINV 176
+A NV
Sbjct: 56 GPQAANV 62
>UNIPROTKB|Q48JS5 [details] [associations]
symbol:capA "Cold shock protein CapA" species:264730
"Pseudomonas syringae pv. phaseolicola 1448A" [GO:0003677 "DNA
binding" evidence=ISS] [GO:0009409 "response to cold" evidence=ISS]
InterPro:IPR002059 InterPro:IPR011129 InterPro:IPR012156
Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 GO:GO:0005737 GO:GO:0006355 GO:GO:0003677
GO:GO:0009409 EMBL:CP000058 GenomeReviews:CP000058_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 eggNOG:COG1278 HOGENOM:HOG000070674 KO:K03704
RefSeq:YP_274352.1 ProteinModelPortal:Q48JS5 SMR:Q48JS5
STRING:Q48JS5 GeneID:3557063 KEGG:psp:PSPPH_2133 PATRIC:19973494
OMA:GFIVPAN ProtClustDB:CLSK410037 Uniprot:Q48JS5
Length = 70
Score = 98 (39.6 bits), Expect = 5.3e-05, P = 5.3e-05
Identities = 24/65 (36%), Positives = 37/65 (56%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 70
G VK+++ ++GFGFIT +D+FVH +I F+SL G+ V F G+K +
Sbjct: 7 GTVKWFNDEKGFGFITPQGGGDDLFVHFKAIESDG----FKSLKEGQTVSFVAAKGQKGM 62
Query: 71 EAINV 75
+A V
Sbjct: 63 QAEQV 67
Score = 98 (39.6 bits), Expect = 5.3e-05, P = 5.3e-05
Identities = 24/65 (36%), Positives = 37/65 (56%)
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 171
G VK+++ ++GFGFIT +D+FVH +I F+SL G+ V F G+K +
Sbjct: 7 GTVKWFNDEKGFGFITPQGGGDDLFVHFKAIESDG----FKSLKEGQTVSFVAAKGQKGM 62
Query: 172 EAINV 176
+A V
Sbjct: 63 QAEQV 67
>TIGR_CMR|BA_1135 [details] [associations]
symbol:BA_1135 "cold shock protein CspA" species:198094
"Bacillus anthracis str. Ames" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009409 "response to cold"
evidence=ISS] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0005737 GO:GO:0006355
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0006351 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 eggNOG:COG1278 RefSeq:NP_843619.1
RefSeq:YP_017753.1 RefSeq:YP_027326.1 ProteinModelPortal:Q81TW8
SMR:Q81TW8 DNASU:1086206 EnsemblBacteria:EBBACT00000011078
EnsemblBacteria:EBBACT00000018522 EnsemblBacteria:EBBACT00000023981
GeneID:1086206 GeneID:2816671 GeneID:2852366 KEGG:ban:BA_1135
KEGG:bar:GBAA_1135 KEGG:bat:BAS1054 HOGENOM:HOG000070674 KO:K03704
OMA:LNIKGHY ProtClustDB:CLSK916107
BioCyc:BANT260799:GJAJ-1130-MONOMER
BioCyc:BANT261594:GJ7F-1181-MONOMER Uniprot:Q81TW8
Length = 67
Score = 98 (39.6 bits), Expect = 5.3e-05, P = 5.3e-05
Identities = 26/67 (38%), Positives = 40/67 (59%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK++++++GFGFI + + D+FVH S+I F+SL G+ V F I G +
Sbjct: 3 VTGQVKWFNNEKGFGFI-EVPGENDVFVHFSAIETDG----FKSLEEGQKVSFEIEEGNR 57
Query: 69 DIEAINV 75
+A NV
Sbjct: 58 GPQAKNV 64
Score = 98 (39.6 bits), Expect = 5.3e-05, P = 5.3e-05
Identities = 26/67 (38%), Positives = 40/67 (59%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK++++++GFGFI + + D+FVH S+I F+SL G+ V F I G +
Sbjct: 3 VTGQVKWFNNEKGFGFI-EVPGENDVFVHFSAIETDG----FKSLEEGQKVSFEIEEGNR 57
Query: 170 DIEAINV 176
+A NV
Sbjct: 58 GPQAKNV 64
>TIGR_CMR|SO_1648 [details] [associations]
symbol:SO_1648 "cold shock domain family protein"
species:211586 "Shewanella oneidensis MR-1" [GO:0003677 "DNA
binding" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009409 "response to cold"
evidence=ISS] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050
SMART:SM00357 GO:GO:0005737 GO:GO:0006355 GO:GO:0003677
EMBL:AE014299 GenomeReviews:AE014299_GR Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 HOGENOM:HOG000070674 HSSP:P41016
RefSeq:NP_717259.2 ProteinModelPortal:Q8EGF6 GeneID:1169442
PATRIC:23522932 OMA:FEVENGQ ProtClustDB:CLSK912356 Uniprot:Q8EGF6
Length = 69
Score = 98 (39.6 bits), Expect = 5.3e-05, P = 5.3e-05
Identities = 23/65 (35%), Positives = 38/65 (58%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 70
G+VK+++ +GFGFI+ + D FVH +IV F++L G+ V + + G+K
Sbjct: 6 GVVKWFNEDKGFGFISPDNGGADAFVHFRAIVSDG----FKTLAEGQKVSYEVEQGQKGP 61
Query: 71 EAINV 75
+A NV
Sbjct: 62 QAANV 66
Score = 98 (39.6 bits), Expect = 5.3e-05, P = 5.3e-05
Identities = 23/65 (35%), Positives = 38/65 (58%)
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 171
G+VK+++ +GFGFI+ + D FVH +IV F++L G+ V + + G+K
Sbjct: 6 GVVKWFNEDKGFGFISPDNGGADAFVHFRAIVSDG----FKTLAEGQKVSYEVEQGQKGP 61
Query: 172 EAINV 176
+A NV
Sbjct: 62 QAANV 66
>UNIPROTKB|G3MX85 [details] [associations]
symbol:LOC539705 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001878 InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050 PROSITE:PS50158
SMART:SM00343 SMART:SM00357 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 Gene3D:4.10.60.10 SUPFAM:SSF57756
GeneTree:ENSGT00390000001177 EMBL:DAAA02059465
RefSeq:XP_003584165.1 RefSeq:XP_003587957.1
Ensembl:ENSBTAT00000065480 GeneID:539705 KEGG:bta:539705
OMA:CMGSERR Uniprot:G3MX85
Length = 201
Score = 112 (44.5 bits), Expect = 5.7e-05, P = 5.7e-05
Identities = 31/87 (35%), Positives = 49/87 (56%)
Query: 112 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 164
GI K+++ GFGF++ LD D+FVH+S K++ + F +SL GE V+F
Sbjct: 34 GICKWFNVPMGFGFLSMTACAGVALDPPVDVFVHQS---KLHMEGF-RSLKEGEAVEFTF 89
Query: 165 GVGKKDIEAINVTGPNGIPVQGAPKVP 191
K +E++ VTGP G+ G+ + P
Sbjct: 90 KKSAKGLESLRVTGPWGVFCIGSERRP 116
Score = 108 (43.1 bits), Expect = 0.00019, P = 0.00019
Identities = 29/78 (37%), Positives = 45/78 (57%)
Query: 11 GIVKFYDSKRGFGFITR-------LDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
GI K+++ GFGF++ LD D+FVH+S K++ + F +SL GE V+F
Sbjct: 34 GICKWFNVPMGFGFLSMTACAGVALDPPVDVFVHQS---KLHMEGF-RSLKEGEAVEFTF 89
Query: 64 GVGKKDIEAINVTGPNGI 81
K +E++ VTGP G+
Sbjct: 90 KKSAKGLESLRVTGPWGV 107
>UNIPROTKB|P63848 [details] [associations]
symbol:cspA "Probable cold shock protein A" species:1773
"Mycobacterium tuberculosis" [GO:0005618 "cell wall" evidence=IDA]
[GO:0040007 "growth" evidence=IMP] InterPro:IPR002059
InterPro:IPR011129 InterPro:IPR012156 Pfam:PF00313
PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
GO:GO:0005737 GO:GO:0040007 GO:GO:0005618 GO:GO:0006355
EMBL:AE000516 GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR
GO:GO:0003677 EMBL:BX842583 GO:GO:0006351 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR019844
eggNOG:COG1278 HOGENOM:HOG000070674 KO:K03704 PIR:A70564
RefSeq:NP_218165.1 RefSeq:NP_338297.1 RefSeq:YP_006517135.1
ProteinModelPortal:P63848 SMR:P63848 PRIDE:P63848
EnsemblBacteria:EBMYCT00000001507 EnsemblBacteria:EBMYCT00000071867
GeneID:13317256 GeneID:885837 GeneID:922742 KEGG:mtc:MT3750.1
KEGG:mtu:Rv3648c KEGG:mtv:RVBD_3648c PATRIC:18130006
TubercuList:Rv3648c OMA:AWEDEEV ProtClustDB:CLSK792621
Uniprot:P63848
Length = 67
Score = 96 (38.9 bits), Expect = 8.9e-05, P = 8.9e-05
Identities = 23/66 (34%), Positives = 37/66 (56%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 69
+G VK++++++GFGFI D D+FVH + I F++L + V+F IG K
Sbjct: 3 QGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGTG----FRTLEENQKVEFEIGHSPKG 58
Query: 70 IEAINV 75
+A V
Sbjct: 59 PQATGV 64
Score = 96 (38.9 bits), Expect = 8.9e-05, P = 8.9e-05
Identities = 23/66 (34%), Positives = 37/66 (56%)
Query: 111 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKD 170
+G VK++++++GFGFI D D+FVH + I F++L + V+F IG K
Sbjct: 3 QGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGTG----FRTLEENQKVEFEIGHSPKG 58
Query: 171 IEAINV 176
+A V
Sbjct: 59 PQATGV 64
>TIGR_CMR|CPS_2895 [details] [associations]
symbol:CPS_2895 "cold shock-like protein CspD"
species:167879 "Colwellia psychrerythraea 34H" [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] InterPro:IPR002059
InterPro:IPR011129 InterPro:IPR012156 InterPro:IPR012751
Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 GO:GO:0005737 GO:GO:0006950 GO:GO:0006355
GO:GO:0003677 EMBL:CP000083 GenomeReviews:CP000083_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 eggNOG:COG1278 HOGENOM:HOG000070674 KO:K03704
OMA:QVVRFDV TIGRFAMs:TIGR02381 RefSeq:YP_269596.1
ProteinModelPortal:Q480C3 SMR:Q480C3 STRING:Q480C3 GeneID:3518797
KEGG:cps:CPS_2895 PATRIC:21468815
BioCyc:CPSY167879:GI48-2945-MONOMER Uniprot:Q480C3
Length = 72
Score = 96 (38.9 bits), Expect = 8.9e-05, P = 8.9e-05
Identities = 24/70 (34%), Positives = 41/70 (58%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 70
G VK++++ +GFGFI EDIF H S+I +M+ +++L G+ VD+ + G K
Sbjct: 4 GTVKWFNNAKGFGFIRPDSGGEDIFAHYSTI-EMDG---YRTLKAGQDVDYELNDGPKGH 59
Query: 71 EAINVTGPNG 80
A ++ +G
Sbjct: 60 HAASIKLADG 69
Score = 96 (38.9 bits), Expect = 8.9e-05, P = 8.9e-05
Identities = 24/70 (34%), Positives = 41/70 (58%)
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 171
G VK++++ +GFGFI EDIF H S+I +M+ +++L G+ VD+ + G K
Sbjct: 4 GTVKWFNNAKGFGFIRPDSGGEDIFAHYSTI-EMDG---YRTLKAGQDVDYELNDGPKGH 59
Query: 172 EAINVTGPNG 181
A ++ +G
Sbjct: 60 HAASIKLADG 69
>UNIPROTKB|P0A968 [details] [associations]
symbol:cspD species:83333 "Escherichia coli K-12"
[GO:0003697 "single-stranded DNA binding" evidence=IDA] [GO:0042594
"response to starvation" evidence=IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008156 "negative
regulation of DNA replication" evidence=IEA;IDA] [GO:0003723 "RNA
binding" evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 InterPro:IPR012156
InterPro:IPR012751 Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0005737 GO:GO:0006355
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0042594 GO:GO:0003723 GO:GO:0003697
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0008156
InterPro:IPR019844 EMBL:M31045 eggNOG:COG1278 HOGENOM:HOG000070674
KO:K03704 PIR:H64826 RefSeq:NP_415401.1 RefSeq:YP_489153.1
ProteinModelPortal:P0A968 SMR:P0A968 DIP:DIP-47833N IntAct:P0A968
MINT:MINT-1219798 PaxDb:P0A968 PRIDE:P0A968
EnsemblBacteria:EBESCT00000001356 EnsemblBacteria:EBESCT00000017372
GeneID:12934143 GeneID:945669 KEGG:ecj:Y75_p0853 KEGG:eco:b0880
PATRIC:32116969 EchoBASE:EB1102 EcoGene:EG11111 OMA:QVVRFDV
ProtClustDB:PRK09937 BioCyc:EcoCyc:EG11111-MONOMER
BioCyc:ECOL316407:JW0864-MONOMER Genevestigator:P0A968
TIGRFAMs:TIGR02381 Uniprot:P0A968
Length = 74
Score = 93 (37.8 bits), Expect = 0.00020, P = 0.00020
Identities = 22/59 (37%), Positives = 37/59 (62%)
Query: 10 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
+G VK++++ +GFGFI EDIF H S+I +M+ +++L G+ V F++ G K
Sbjct: 3 KGTVKWFNNAKGFGFICPEGGGEDIFAHYSTI-QMDG---YRTLKAGQSVQFDVHQGPK 57
Score = 93 (37.8 bits), Expect = 0.00020, P = 0.00020
Identities = 22/59 (37%), Positives = 37/59 (62%)
Query: 111 RGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
+G VK++++ +GFGFI EDIF H S+I +M+ +++L G+ V F++ G K
Sbjct: 3 KGTVKWFNNAKGFGFICPEGGGEDIFAHYSTI-QMDG---YRTLKAGQSVQFDVHQGPK 57
>FB|FBgn0035626 [details] [associations]
symbol:lin-28 "lin-28" species:7227 "Drosophila melanogaster"
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0001708 "cell fate specification" evidence=ISS]
InterPro:IPR001878 InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00313 PRINTS:PR00050 PROSITE:PS50158 SMART:SM00343
SMART:SM00357 GO:GO:0005737 EMBL:AE014296 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 Gene3D:4.10.60.10
SUPFAM:SSF57756 eggNOG:COG1278 HSSP:O54310 CTD:38639
GeneTree:ENSGT00390000001177 EMBL:AF521096 EMBL:AY118360
RefSeq:NP_647983.1 UniGene:Dm.13816 ProteinModelPortal:Q9VRN5
SMR:Q9VRN5 STRING:Q9VRN5 PaxDb:Q9VRN5 EnsemblMetazoa:FBtr0077090
GeneID:38639 KEGG:dme:Dmel_CG17334 UCSC:CG17334-RA
FlyBase:FBgn0035626 InParanoid:Q9VRN5 OMA:FANHIAS OrthoDB:EOG447D9P
PhylomeDB:Q9VRN5 GenomeRNAi:38639 NextBio:809656 Bgee:Q9VRN5
GermOnline:CG17334 Uniprot:Q9VRN5
Length = 195
Score = 107 (42.7 bits), Expect = 0.00022, P = 0.00022
Identities = 38/120 (31%), Positives = 61/120 (50%)
Query: 74 NVTGPNGIPVQGAPKSSSETVSGTYRN-DSFFPAVHTVR-GIVKFYDSKRGFGFITRLDN 131
NV NG+ + S S T S N S VR G K+++ +G+GF+T D
Sbjct: 3 NVQLENGL--ERRTTSQSSTSSANPANLASPTEECGCVRLGKCKWFNVAKGWGFLTPNDG 60
Query: 132 KEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDIEAINVTGPNGIPVQGAPKVP 191
+++FVH+S +++M+ F+SLG E V+F + +EA V+ +G QG+ P
Sbjct: 61 GQEVFVHQS-VIQMSG---FRSLGEQEEVEFECQRTSRGLEATRVSSRHGGSCQGSTYRP 116
Score = 105 (42.0 bits), Expect = 0.00041, P = 0.00041
Identities = 28/83 (33%), Positives = 49/83 (59%)
Query: 5 EIHTVR-GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNI 63
E VR G K+++ +G+GF+T D +++FVH+S +++M+ F+SLG E V+F
Sbjct: 34 ECGCVRLGKCKWFNVAKGWGFLTPNDGGQEVFVHQS-VIQMSG---FRSLGEQEEVEFEC 89
Query: 64 GVGKKDIEAINVTGPNGIPVQGA 86
+ +EA V+ +G QG+
Sbjct: 90 QRTSRGLEATRVSSRHGGSCQGS 112
>UNIPROTKB|Q9KMY2 [details] [associations]
symbol:VC_A0184 "Cold shock DNA-binding domain protein"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0009409 "response to cold" evidence=ISS]
InterPro:IPR002059 InterPro:IPR011129 InterPro:IPR012156
Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 GO:GO:0005737 GO:GO:0006355 GO:GO:0003677
GO:GO:0009409 EMBL:AE003853 GenomeReviews:AE003853_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 KO:K03704 HSSP:P41016 PIR:A82489
RefSeq:NP_232584.1 ProteinModelPortal:Q9KMY2 SMR:Q9KMY2
DNASU:2611851 GeneID:2611851 KEGG:vch:VCA0184 PATRIC:20084941
OMA:SFEATQD ProtClustDB:CLSK2392342 Uniprot:Q9KMY2
Length = 69
Score = 92 (37.4 bits), Expect = 0.00026, P = 0.00026
Identities = 24/67 (35%), Positives = 40/67 (59%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ +GFGFI + +N D+F H S+I F++L G+ V+F I G+K
Sbjct: 5 VTGTVKWFNETKGFGFIKQ-ENGPDVFAHFSAIQGDG----FRTLAEGQKVEFVITQGQK 59
Query: 69 DIEAINV 75
+A ++
Sbjct: 60 GPQAESI 66
Score = 92 (37.4 bits), Expect = 0.00026, P = 0.00026
Identities = 24/67 (35%), Positives = 40/67 (59%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ +GFGFI + +N D+F H S+I F++L G+ V+F I G+K
Sbjct: 5 VTGTVKWFNETKGFGFIKQ-ENGPDVFAHFSAIQGDG----FRTLAEGQKVEFVITQGQK 59
Query: 170 DIEAINV 176
+A ++
Sbjct: 60 GPQAESI 66
>TIGR_CMR|VC_A0184 [details] [associations]
symbol:VC_A0184 "cold shock DNA-binding domain protein"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] InterPro:IPR002059
InterPro:IPR011129 InterPro:IPR012156 Pfam:PF00313
PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
GO:GO:0005737 GO:GO:0006355 GO:GO:0003677 GO:GO:0009409
EMBL:AE003853 GenomeReviews:AE003853_GR Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR019844 KO:K03704
HSSP:P41016 PIR:A82489 RefSeq:NP_232584.1 ProteinModelPortal:Q9KMY2
SMR:Q9KMY2 DNASU:2611851 GeneID:2611851 KEGG:vch:VCA0184
PATRIC:20084941 OMA:SFEATQD ProtClustDB:CLSK2392342 Uniprot:Q9KMY2
Length = 69
Score = 92 (37.4 bits), Expect = 0.00026, P = 0.00026
Identities = 24/67 (35%), Positives = 40/67 (59%)
Query: 9 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 68
V G VK+++ +GFGFI + +N D+F H S+I F++L G+ V+F I G+K
Sbjct: 5 VTGTVKWFNETKGFGFIKQ-ENGPDVFAHFSAIQGDG----FRTLAEGQKVEFVITQGQK 59
Query: 69 DIEAINV 75
+A ++
Sbjct: 60 GPQAESI 66
Score = 92 (37.4 bits), Expect = 0.00026, P = 0.00026
Identities = 24/67 (35%), Positives = 40/67 (59%)
Query: 110 VRGIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKK 169
V G VK+++ +GFGFI + +N D+F H S+I F++L G+ V+F I G+K
Sbjct: 5 VTGTVKWFNETKGFGFIKQ-ENGPDVFAHFSAIQGDG----FRTLAEGQKVEFVITQGQK 59
Query: 170 DIEAINV 176
+A ++
Sbjct: 60 GPQAESI 66
>TIGR_CMR|SO_2628 [details] [associations]
symbol:SO_2628 "stress response protein CspD"
species:211586 "Shewanella oneidensis MR-1" [GO:0003697
"single-stranded DNA binding" evidence=ISS] [GO:0003723 "RNA
binding" evidence=ISS] [GO:0006950 "response to stress"
evidence=ISS] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 InterPro:IPR012751 Pfam:PF00313
PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
GO:GO:0005737 GO:GO:0006950 GO:GO:0006355 GO:GO:0003677
EMBL:AE014299 GenomeReviews:AE014299_GR Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR019844 HSSP:O54310
HOGENOM:HOG000070674 KO:K03704 TIGRFAMs:TIGR02381
RefSeq:NP_718213.1 ProteinModelPortal:Q8EDW3 SMR:Q8EDW3
GeneID:1170330 KEGG:son:SO_2628 PATRIC:23524883 OMA:DGCENDI
ProtClustDB:CLSK906807 Uniprot:Q8EDW3
Length = 68
Score = 91 (37.1 bits), Expect = 0.00034, P = 0.00034
Identities = 22/62 (35%), Positives = 36/62 (58%)
Query: 11 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 70
G VK++++ +GFGFI ED+F H S+I +M +++L G+ V F + G K +
Sbjct: 4 GTVKWFNNAKGFGFICPDQGGEDVFAHYSTI-EMEG---YRTLKAGQPVQFEVEQGPKGM 59
Query: 71 EA 72
A
Sbjct: 60 HA 61
Score = 91 (37.1 bits), Expect = 0.00034, P = 0.00034
Identities = 22/62 (35%), Positives = 36/62 (58%)
Query: 112 GIVKFYDSKRGFGFITRLDNKEDIFVHKSSIVKMNPKKFFQSLGLGEIVDFNIGVGKKDI 171
G VK++++ +GFGFI ED+F H S+I +M +++L G+ V F + G K +
Sbjct: 4 GTVKWFNNAKGFGFICPDQGGEDVFAHYSTI-EMEG---YRTLKAGQPVQFEVEQGPKGM 59
Query: 172 EA 173
A
Sbjct: 60 HA 61
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.141 0.411 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 191 191 0.00094 110 3 11 22 0.46 32
31 0.43 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 134
No. of states in DFA: 487 (52 KB)
Total size of DFA: 117 KB (2077 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 17.93u 0.07s 18.00t Elapsed: 00:00:02
Total cpu time: 17.95u 0.07s 18.02t Elapsed: 00:00:02
Start: Thu Aug 15 12:50:56 2013 End: Thu Aug 15 12:50:58 2013
WARNINGS ISSUED: 1