BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9901
(390 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SDW|A Chain A, Reduced (Cu+) Peptidylglycine Alpha-Hydroxylating
Monooxygenase With Bound Peptide And Dioxygen
pdb|3MIB|A Chain A, Oxidized (Cu2+) Peptidylglycine Alpha-Hydroxylating
Monooxygenase (Phm) With Bound Nitrite
pdb|3MIC|A Chain A, Oxidized (Cu2+) Peptidylglycine Alpha-Hydroxylating
Monooxygenase (Phm) With Bound Azide Obtained By
Co-Crystallization
pdb|3MID|A Chain A, Oxidized (Cu2+) Peptidylglycine Alpha-Hydroxylating
Monooxygenase (Phm) With Bound Azide Obtained By Soaking
(100mm Nan3)
pdb|3MIE|A Chain A, Oxidized (Cu2+) Peptidylglycine Alpha-Hydroxylating
Monooxygenase (Phm) With Bound Azide Obtained By Soaking
(50mm Nan3)
pdb|3MIF|A Chain A, Oxidized (Cu2+) Peptidylglycine Alpha-Hydroxylating
Monooxygenase (Phm) With Bound Carbon Monooxide (Co)
pdb|3MIG|A Chain A, Oxidized (Cu2+) Peptidylglycine Alpha-Hydroxylating
Monooxygenase (Phm) With Bound Nitrite, Obtained In The
Presence Of Substrate
pdb|3MIH|A Chain A, Oxidized (Cu2+) Peptidylglycine Alpha-Hydroxylating
Monooxygenase (Phm) With Bound Azide, Obtained In The
Presence Of Substrate
pdb|3MLJ|A Chain A, Reduced (Cu+) Peptidylglycine Alpha-Hydroxylating
Monooxygenase (Phm) With Bound Carbon Monooxide (Co)
pdb|3MLK|A Chain A, Reduced (Cu+) Peptidylglycine Alpha-Hydroxylating
Monooxygenase (Phm) With Bound Nitrite
pdb|3MLL|A Chain A, Reduced (Cu+) Peptidylglycine Alpha-Hydroxylating
Monooxygenase (Phm) With Bound Azide
Length = 314
Score = 147 bits (371), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 92/228 (40%), Positives = 119/228 (52%), Gaps = 35/228 (15%)
Query: 182 IIYAWARDAPSLILPEGVGFKVGGDTAIQYLVLQVHYAHVEGFRDGHTDSSGVFLQYTRR 241
I+YAWAR+AP LP+GVGF+VGG+T +Y VLQVHY + FRD H D SGV + TR
Sbjct: 95 ILYAWARNAPPTRLPKGVGFRVGGETGSKYFVLQVHYGDISAFRDNHKDCSGVSVHLTRV 154
Query: 242 PLTKEAGVLLLGTGGKI--PALSVENMETSCIMMEDKEIHPFAYRTHTHALGKEVQGYVV 299
P AG+ L+ + + P V N + SC + +H FAYR HTH LGK V GY V
Sbjct: 155 PQPLIAGMYLMMSVDTVIPPGEKVVNADISC-QYKMYPMHVFAYRVHTHHLGKVVSGYRV 213
Query: 300 KKNNNLNRKDEWLLLGKRDPLTPQMFYPVE--VNVTI-------------------HKG- 337
R +W L+G+++P PQ FYPVE V+VT H G
Sbjct: 214 -------RNGQWTLIGRQNPQLPQAFYPVEHPVDVTFGDILAARCVFTGEGRTEATHIGG 266
Query: 338 --QDEMCNFYLMYWVENSSPLETKYCFSEGPPNYYWGMGDNLNNIPHP 383
DEMCN Y+MY++E L C P+ + + NIP P
Sbjct: 267 TSSDEMCNLYIMYYMEAKYALSFMTCTKNVAPDMFRTIPAE-ANIPIP 313
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 61/116 (52%), Gaps = 9/116 (7%)
Query: 65 KEVQGYVVKKNNNLNRKDEWLLLGKRDPLTPQMFYPVEVNVTIHKGDVMAARCVMKNY-R 123
K V GY V R +W L+G+++P PQ FYPVE V + GD++AARCV R
Sbjct: 206 KVVSGYRV-------RNGQWTLIGRQNPQLPQAFYPVEHPVDVTFGDILAARCVFTGEGR 258
Query: 124 NHETYVGSTGQDEMCNFYLMYWVENSSPLETKYCFSEGPPNYYWGMGDNLNNIPHP 179
T++G T DEMCN Y+MY++E L C P+ + + NIP P
Sbjct: 259 TEATHIGGTSSDEMCNLYIMYYMEAKYALSFMTCTKNVAPDMFRTIPAE-ANIPIP 313
>pdb|4E4Z|A Chain A, Oxidized (cu2+) Peptidylglycine Alpha-hydroxylating
Monooxygenase (phm) In Complex With Hydrogen Peroxide
(1.98 A)
Length = 312
Score = 147 bits (371), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 92/228 (40%), Positives = 119/228 (52%), Gaps = 35/228 (15%)
Query: 182 IIYAWARDAPSLILPEGVGFKVGGDTAIQYLVLQVHYAHVEGFRDGHTDSSGVFLQYTRR 241
I+YAWAR+AP LP+GVGF+VGG+T +Y VLQVHY + FRD H D SGV + TR
Sbjct: 93 ILYAWARNAPPTRLPKGVGFRVGGETGSKYFVLQVHYGDISAFRDNHKDCSGVSVHLTRV 152
Query: 242 PLTKEAGVLLLGTGGKI--PALSVENMETSCIMMEDKEIHPFAYRTHTHALGKEVQGYVV 299
P AG+ L+ + + P V N + SC + +H FAYR HTH LGK V GY V
Sbjct: 153 PQPLIAGMYLMMSVDTVIPPGEKVVNADISC-QYKMYPMHVFAYRVHTHHLGKVVSGYRV 211
Query: 300 KKNNNLNRKDEWLLLGKRDPLTPQMFYPVE--VNVTI-------------------HKG- 337
R +W L+G+++P PQ FYPVE V+VT H G
Sbjct: 212 -------RNGQWTLIGRQNPQLPQAFYPVEHPVDVTFGDILAARCVFTGEGRTEATHIGG 264
Query: 338 --QDEMCNFYLMYWVENSSPLETKYCFSEGPPNYYWGMGDNLNNIPHP 383
DEMCN Y+MY++E L C P+ + + NIP P
Sbjct: 265 TSSDEMCNLYIMYYMEAKYALSFMTCTKNVAPDMFRTIPAE-ANIPIP 311
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 61/116 (52%), Gaps = 9/116 (7%)
Query: 65 KEVQGYVVKKNNNLNRKDEWLLLGKRDPLTPQMFYPVEVNVTIHKGDVMAARCVMKNY-R 123
K V GY V R +W L+G+++P PQ FYPVE V + GD++AARCV R
Sbjct: 204 KVVSGYRV-------RNGQWTLIGRQNPQLPQAFYPVEHPVDVTFGDILAARCVFTGEGR 256
Query: 124 NHETYVGSTGQDEMCNFYLMYWVENSSPLETKYCFSEGPPNYYWGMGDNLNNIPHP 179
T++G T DEMCN Y+MY++E L C P+ + + NIP P
Sbjct: 257 TEATHIGGTSSDEMCNLYIMYYMEAKYALSFMTCTKNVAPDMFRTIPAE-ANIPIP 311
>pdb|1YJK|A Chain A, Reduced Peptidylglycine Alpha-Hydroxylating Monooxygenase
(Phm) In A New Crystal Form
Length = 306
Score = 147 bits (371), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 92/228 (40%), Positives = 119/228 (52%), Gaps = 35/228 (15%)
Query: 182 IIYAWARDAPSLILPEGVGFKVGGDTAIQYLVLQVHYAHVEGFRDGHTDSSGVFLQYTRR 241
I+YAWAR+AP LP+GVGF+VGG+T +Y VLQVHY + FRD H D SGV + TR
Sbjct: 88 ILYAWARNAPPTRLPKGVGFRVGGETGSKYFVLQVHYGDISAFRDNHKDCSGVSVHLTRV 147
Query: 242 PLTKEAGVLLLGTGGKI--PALSVENMETSCIMMEDKEIHPFAYRTHTHALGKEVQGYVV 299
P AG+ L+ + + P V N + SC + +H FAYR HTH LGK V GY V
Sbjct: 148 PQPLIAGMYLMMSVDTVIPPGEKVVNADISC-QYKMYPMHVFAYRVHTHHLGKVVSGYRV 206
Query: 300 KKNNNLNRKDEWLLLGKRDPLTPQMFYPVE--VNVTI-------------------HKG- 337
R +W L+G+++P PQ FYPVE V+VT H G
Sbjct: 207 -------RNGQWTLIGRQNPQLPQAFYPVEHPVDVTFGDILAARCVFTGEGRTEATHIGG 259
Query: 338 --QDEMCNFYLMYWVENSSPLETKYCFSEGPPNYYWGMGDNLNNIPHP 383
DEMCN Y+MY++E L C P+ + + NIP P
Sbjct: 260 TSSDEMCNLYIMYYMEAKYALSFMTCTKNVAPDMFRTIPAE-ANIPIP 306
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 61/116 (52%), Gaps = 9/116 (7%)
Query: 65 KEVQGYVVKKNNNLNRKDEWLLLGKRDPLTPQMFYPVEVNVTIHKGDVMAARCVMKNY-R 123
K V GY V R +W L+G+++P PQ FYPVE V + GD++AARCV R
Sbjct: 199 KVVSGYRV-------RNGQWTLIGRQNPQLPQAFYPVEHPVDVTFGDILAARCVFTGEGR 251
Query: 124 NHETYVGSTGQDEMCNFYLMYWVENSSPLETKYCFSEGPPNYYWGMGDNLNNIPHP 179
T++G T DEMCN Y+MY++E L C P+ + + NIP P
Sbjct: 252 TEATHIGGTSSDEMCNLYIMYYMEAKYALSFMTCTKNVAPDMFRTIPAE-ANIPIP 306
>pdb|1YIP|A Chain A, Oxidized Peptidylglycine Alpha-hydroxylating Monooxygenase
(phm) In A New Crystal Form
Length = 311
Score = 147 bits (370), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 92/228 (40%), Positives = 119/228 (52%), Gaps = 35/228 (15%)
Query: 182 IIYAWARDAPSLILPEGVGFKVGGDTAIQYLVLQVHYAHVEGFRDGHTDSSGVFLQYTRR 241
I+YAWAR+AP LP+GVGF+VGG+T +Y VLQVHY + FRD H D SGV + TR
Sbjct: 93 ILYAWARNAPPTRLPKGVGFRVGGETGSKYFVLQVHYGDISAFRDNHKDCSGVSVHLTRV 152
Query: 242 PLTKEAGVLLLGTGGKI--PALSVENMETSCIMMEDKEIHPFAYRTHTHALGKEVQGYVV 299
P AG+ L+ + + P V N + SC + +H FAYR HTH LGK V GY V
Sbjct: 153 PQPLIAGMYLMMSVDTVIPPGEKVVNADISC-QYKMYPMHVFAYRVHTHHLGKVVSGYRV 211
Query: 300 KKNNNLNRKDEWLLLGKRDPLTPQMFYPVE--VNVTI-------------------HKG- 337
R +W L+G+++P PQ FYPVE V+VT H G
Sbjct: 212 -------RNGQWTLIGRQNPQLPQAFYPVEHPVDVTFGDILAARCVFTGEGRTEATHIGG 264
Query: 338 --QDEMCNFYLMYWVENSSPLETKYCFSEGPPNYYWGMGDNLNNIPHP 383
DEMCN Y+MY++E L C P+ + + NIP P
Sbjct: 265 TSSDEMCNLYIMYYMEAKYALSFMTCTKNVAPDMFRTIPAE-ANIPIP 311
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 61/116 (52%), Gaps = 9/116 (7%)
Query: 65 KEVQGYVVKKNNNLNRKDEWLLLGKRDPLTPQMFYPVEVNVTIHKGDVMAARCVMKNY-R 123
K V GY V R +W L+G+++P PQ FYPVE V + GD++AARCV R
Sbjct: 204 KVVSGYRV-------RNGQWTLIGRQNPQLPQAFYPVEHPVDVTFGDILAARCVFTGEGR 256
Query: 124 NHETYVGSTGQDEMCNFYLMYWVENSSPLETKYCFSEGPPNYYWGMGDNLNNIPHP 179
T++G T DEMCN Y+MY++E L C P+ + + NIP P
Sbjct: 257 TEATHIGGTSSDEMCNLYIMYYMEAKYALSFMTCTKNVAPDMFRTIPAE-ANIPIP 311
>pdb|1OPM|A Chain A, Oxidized (Cu2+) Peptidylglycine Alpha-Hydroxylating
Monooxygenase (Phm) With Bound Substrate
pdb|3PHM|A Chain A, Reduced (Cu+) Peptidylglycine Alpha-Hydroxylating
Monooxygenase (Phm)
pdb|1PHM|A Chain A, Peptidylglycine Alpha-Hydroxylating Monooxygenase (Phm)
From Rat
Length = 310
Score = 146 bits (369), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 88/215 (40%), Positives = 114/215 (53%), Gaps = 34/215 (15%)
Query: 182 IIYAWARDAPSLILPEGVGFKVGGDTAIQYLVLQVHYAHVEGFRDGHTDSSGVFLQYTRR 241
I+YAWAR+AP LP+GVGF+VGG+T +Y VLQVHY + FRD H D SGV + TR
Sbjct: 93 ILYAWARNAPPTRLPKGVGFRVGGETGSKYFVLQVHYGDISAFRDNHKDCSGVSVHLTRV 152
Query: 242 PLTKEAGVLLLGTGGKI--PALSVENMETSCIMMEDKEIHPFAYRTHTHALGKEVQGYVV 299
P AG+ L+ + + P V N + SC + +H FAYR HTH LGK V GY V
Sbjct: 153 PQPLIAGMYLMMSVDTVIPPGEKVVNADISC-QYKMYPMHVFAYRVHTHHLGKVVSGYRV 211
Query: 300 KKNNNLNRKDEWLLLGKRDPLTPQMFYPVE--VNVTI-------------------HKG- 337
R +W L+G+++P PQ FYPVE V+VT H G
Sbjct: 212 -------RNGQWTLIGRQNPQLPQAFYPVEHPVDVTFGDILAARCVFTGEGRTEATHIGG 264
Query: 338 --QDEMCNFYLMYWVENSSPLETKYCFSEGPPNYY 370
DEMCN Y+MY++E L C P+ +
Sbjct: 265 TSSDEMCNLYIMYYMEAKYALSFMTCTKNVAPDMF 299
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 56/103 (54%), Gaps = 8/103 (7%)
Query: 65 KEVQGYVVKKNNNLNRKDEWLLLGKRDPLTPQMFYPVEVNVTIHKGDVMAARCVMKNY-R 123
K V GY V R +W L+G+++P PQ FYPVE V + GD++AARCV R
Sbjct: 204 KVVSGYRV-------RNGQWTLIGRQNPQLPQAFYPVEHPVDVTFGDILAARCVFTGEGR 256
Query: 124 NHETYVGSTGQDEMCNFYLMYWVENSSPLETKYCFSEGPPNYY 166
T++G T DEMCN Y+MY++E L C P+ +
Sbjct: 257 TEATHIGGTSSDEMCNLYIMYYMEAKYALSFMTCTKNVAPDMF 299
>pdb|1YJL|A Chain A, Reduced Peptidylglycine Alpha-Hydroxylating Monooxygenase
In A New Crystal Form
Length = 306
Score = 145 bits (367), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 91/228 (39%), Positives = 119/228 (52%), Gaps = 35/228 (15%)
Query: 182 IIYAWARDAPSLILPEGVGFKVGGDTAIQYLVLQVHYAHVEGFRDGHTDSSGVFLQYTRR 241
I+YAWAR+AP LP+GVGF+VGG+T +Y VLQVHY + FRD H D SGV + TR
Sbjct: 88 ILYAWARNAPPTRLPKGVGFRVGGETGSKYFVLQVHYGDISAFRDNHKDCSGVSVHLTRV 147
Query: 242 PLTKEAGVLLLGTGGKI--PALSVENMETSCIMMEDKEIHPFAYRTHTHALGKEVQGYVV 299
P AG+ L+ + + P V N + SC + +H FAYR HTH LGK V GY V
Sbjct: 148 PQPLIAGMYLMMSVDTVIPPGEKVVNADISC-QYKMYPMHVFAYRVHTHHLGKVVSGYRV 206
Query: 300 KKNNNLNRKDEWLLLGKRDPLTPQMFYPVE--VNVTI-------------------HKG- 337
R +W L+G+++P PQ FYPVE V+VT H G
Sbjct: 207 -------RNGQWTLIGRQNPQLPQAFYPVEHPVDVTFGDILAARCVFTGEGRTEATHIGG 259
Query: 338 --QDEMCNFYLMYWVENSSPLETKYCFSEGPPNYYWGMGDNLNNIPHP 383
DE+CN Y+MY++E L C P+ + + NIP P
Sbjct: 260 TSSDEICNLYIMYYMEAKYALSFMTCTKNVAPDMFRTIPAE-ANIPIP 306
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 61/116 (52%), Gaps = 9/116 (7%)
Query: 65 KEVQGYVVKKNNNLNRKDEWLLLGKRDPLTPQMFYPVEVNVTIHKGDVMAARCVMKNY-R 123
K V GY V R +W L+G+++P PQ FYPVE V + GD++AARCV R
Sbjct: 199 KVVSGYRV-------RNGQWTLIGRQNPQLPQAFYPVEHPVDVTFGDILAARCVFTGEGR 251
Query: 124 NHETYVGSTGQDEMCNFYLMYWVENSSPLETKYCFSEGPPNYYWGMGDNLNNIPHP 179
T++G T DE+CN Y+MY++E L C P+ + + NIP P
Sbjct: 252 TEATHIGGTSSDEICNLYIMYYMEAKYALSFMTCTKNVAPDMFRTIPAE-ANIPIP 306
>pdb|1YI9|A Chain A, Crystal Structure Analysis Of The Oxidized Form Of The
M314i Mutant Of Peptidylglycine Alpha-Hydroxylating
Monooxygenase
Length = 309
Score = 145 bits (366), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 91/228 (39%), Positives = 119/228 (52%), Gaps = 35/228 (15%)
Query: 182 IIYAWARDAPSLILPEGVGFKVGGDTAIQYLVLQVHYAHVEGFRDGHTDSSGVFLQYTRR 241
I+YAWAR+AP LP+GVGF+VGG+T +Y VLQVHY + FRD H D SGV + TR
Sbjct: 91 ILYAWARNAPPTRLPKGVGFRVGGETGSKYFVLQVHYGDISAFRDNHKDCSGVSVHLTRV 150
Query: 242 PLTKEAGVLLLGTGGKI--PALSVENMETSCIMMEDKEIHPFAYRTHTHALGKEVQGYVV 299
P AG+ L+ + + P V N + SC + +H FAYR HTH LGK V GY V
Sbjct: 151 PQPLIAGMYLMMSVDTVIPPGEKVVNADISC-QYKMYPMHVFAYRVHTHHLGKVVSGYRV 209
Query: 300 KKNNNLNRKDEWLLLGKRDPLTPQMFYPVE--VNVTI-------------------HKG- 337
R +W L+G+++P PQ FYPVE V+VT H G
Sbjct: 210 -------RNGQWTLIGRQNPQLPQAFYPVEHPVDVTFGDILAARCVFTGEGRTEATHIGG 262
Query: 338 --QDEMCNFYLMYWVENSSPLETKYCFSEGPPNYYWGMGDNLNNIPHP 383
DE+CN Y+MY++E L C P+ + + NIP P
Sbjct: 263 TSSDEICNLYIMYYMEAKYALSFMTCTKNVAPDMFRTIPAE-ANIPIP 309
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 61/116 (52%), Gaps = 9/116 (7%)
Query: 65 KEVQGYVVKKNNNLNRKDEWLLLGKRDPLTPQMFYPVEVNVTIHKGDVMAARCVMKNY-R 123
K V GY V R +W L+G+++P PQ FYPVE V + GD++AARCV R
Sbjct: 202 KVVSGYRV-------RNGQWTLIGRQNPQLPQAFYPVEHPVDVTFGDILAARCVFTGEGR 254
Query: 124 NHETYVGSTGQDEMCNFYLMYWVENSSPLETKYCFSEGPPNYYWGMGDNLNNIPHP 179
T++G T DE+CN Y+MY++E L C P+ + + NIP P
Sbjct: 255 TEATHIGGTSSDEICNLYIMYYMEAKYALSFMTCTKNVAPDMFRTIPAE-ANIPIP 309
>pdb|2PN7|A Chain A, Human Gamma-Glutamyl Cyclotransferase
pdb|2PN7|B Chain B, Human Gamma-Glutamyl Cyclotransferase
Length = 188
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Query: 291 GKEVQGYVVKKN-NNLNRKDEWLLLGKRDPLTPQMFYPVEVNVTIHKGQDEMCNFYLMYW 349
G EV G V K N +NLN DE ++ + M+ +EV V +G++ C YLM
Sbjct: 76 GDEVWGVVWKMNKSNLNSLDE------QEGVKSGMYVVIEVKVATQEGKEITCRSYLMTN 129
Query: 350 VENSSP 355
E++ P
Sbjct: 130 YESAPP 135
>pdb|3CRY|A Chain A, Gamma-Glutamyl Cyclotransferase
pdb|3CRY|B Chain B, Gamma-Glutamyl Cyclotransferase
Length = 188
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 291 GKEVQGYVVKKN-NNLNRKDEWLLLGKRDPLTPQMFYPVEVNVTIHKGQDEMCNFYLMYW 349
G EV G V K N +NLN DE + + M+ +EV V +G++ C YLM
Sbjct: 76 GDEVWGVVWKMNKSNLNSLDE------QQGVKSGMYVVIEVKVATQEGKEITCRSYLMTN 129
Query: 350 VENSSP 355
E++ P
Sbjct: 130 YESAPP 135
>pdb|2RBH|A Chain A, Gamma-Glutamyl Cyclotransferase
pdb|2RBH|B Chain B, Gamma-Glutamyl Cyclotransferase
Length = 188
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 291 GKEVQGYVVKKN-NNLNRKDEWLLLGKRDPLTPQMFYPVEVNVTIHKGQDEMCNFYLMYW 349
G EV G V K N +NLN DE + + M+ +EV V +G++ C YLM
Sbjct: 76 GDEVWGVVWKMNKSNLNSLDE------QAGVKSGMYVVIEVKVATQEGKEITCRSYLMTN 129
Query: 350 VENSSP 355
E++ P
Sbjct: 130 YESAPP 135
>pdb|1A8H|A Chain A, Methionyl-Trna Synthetase From Thermus Thermophilus
Length = 500
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 55/166 (33%), Gaps = 16/166 (9%)
Query: 169 MGDNLNNIPHPGPIIYAWARDAPSLILPEGVGFKVGGDTAIQYLVLQVHYAHVEGFRDGH 228
M L N+ P ++ + RDA L + + G DT + L+ Y
Sbjct: 298 MSKTLGNVVDPFALLEKYGRDALRYYLLREIPY--GQDTPVSEEALRTRY------EADL 349
Query: 229 TDSSGVFLQYTRRPLTKEAGVLLLGTGGKIPALSVENMETSCIMMEDKEIHPFAYRTHTH 288
D G +Q TR +L G+IP V E + + P H
Sbjct: 350 ADDLGNLVQRTR-------AMLFRFAEGRIPE-PVAGEELAEGTGLAGRLRPLVRELKFH 401
Query: 289 ALGKEVQGYVVKKNNNLNRKDEWLLLGKRDPLTPQMFYPVEVNVTI 334
+E YV N +N K W L K + Y V + I
Sbjct: 402 VALEEAMAYVKALNRYINEKKPWELFKKEPEEARAVLYRVVEGLRI 447
>pdb|1WOY|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225f
Mutant From Thermus Thermophilus
pdb|2D5B|A Chain A, Crystal Structure Of Thermus Thermophilus Methionyl Trna
Synthetase Y225f Mutant Obtained In The Presence Of
Peg6000
Length = 500
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 55/166 (33%), Gaps = 16/166 (9%)
Query: 169 MGDNLNNIPHPGPIIYAWARDAPSLILPEGVGFKVGGDTAIQYLVLQVHYAHVEGFRDGH 228
M L N+ P ++ + RDA L + + G DT + L+ Y
Sbjct: 298 MSKTLGNVVDPFALLEKYGRDALRYYLLREIPY--GQDTPVSEEALRTRY------EADL 349
Query: 229 TDSSGVFLQYTRRPLTKEAGVLLLGTGGKIPALSVENMETSCIMMEDKEIHPFAYRTHTH 288
D G +Q TR +L G+IP V E + + P H
Sbjct: 350 ADDLGNLVQRTR-------AMLFRFAEGRIPE-PVAGEELAEGTGLAGRLRPLVRELKFH 401
Query: 289 ALGKEVQGYVVKKNNNLNRKDEWLLLGKRDPLTPQMFYPVEVNVTI 334
+E YV N +N K W L K + Y V + I
Sbjct: 402 VALEEAMAYVKALNRYINEKKPWELFKKEPEEARAVLYRVVEGLRI 447
>pdb|2D54|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225a
Mutant From Thermus Thermophilus
Length = 502
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 55/166 (33%), Gaps = 16/166 (9%)
Query: 169 MGDNLNNIPHPGPIIYAWARDAPSLILPEGVGFKVGGDTAIQYLVLQVHYAHVEGFRDGH 228
M L N+ P ++ + RDA L + + G DT + L+ Y
Sbjct: 298 MSKTLGNVVDPFALLEKYGRDALRYYLLREIPY--GQDTPVSEEALRTRY------EADL 349
Query: 229 TDSSGVFLQYTRRPLTKEAGVLLLGTGGKIPALSVENMETSCIMMEDKEIHPFAYRTHTH 288
D G +Q TR +L G+IP V E + + P H
Sbjct: 350 ADDLGNLVQRTR-------AMLFRFAEGRIPE-PVAGEELAEGTGLAGRLRPLVRELKFH 401
Query: 289 ALGKEVQGYVVKKNNNLNRKDEWLLLGKRDPLTPQMFYPVEVNVTI 334
+E YV N +N K W L K + Y V + I
Sbjct: 402 VALEEAMAYVKALNRYINEKKPWELFKKEPEEARAVLYRVVEGLRI 447
>pdb|3S6B|A Chain A, Crystal Structure Of Methionine Aminopeptidase 1b From
Plasmodium Falciparum, Pf10_0150
Length = 368
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Query: 11 YRAVHCDLIRLNNTDHIVHTSDISISDKNIVGTQIFGYENPCKTCHPSSKLKN-SKEVQG 69
Y+ VH DL N T + +D+ K +V T F K C P KN +
Sbjct: 198 YKGVHSDL---NETYFVGDINDVPKEGKELVETCYFSLMEAIKKCKPGMFYKNIGTLIDA 254
Query: 70 YVVKKNNNLNR 80
YV KKN ++ R
Sbjct: 255 YVSKKNFSVVR 265
>pdb|3DWB|A Chain A, Structure Of Human Ece-1 Complexed With Phosphoramidon
Length = 670
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 20/99 (20%)
Query: 92 PLTPQMFYPVEVN----VTIHKGDVMAA---------RCVMKNY------RNHETYVGST 132
P +FYPVE+N + ++ + + RC++ NY R +++
Sbjct: 250 PFLNTIFYPVEINESEPIVVYDKEYLEQISTLINTTDRCLLNNYMIWNLVRKTSSFLDQR 309
Query: 133 GQDEMCNFY-LMYWVENSSPLETKYCFSEGPPNYYWGMG 170
QD F +MY + +S K+C S+ N + +G
Sbjct: 310 FQDADEKFMEVMYGTKKTSLPRWKFCVSDTENNLGFALG 348
>pdb|2REG|A Chain A, Abc-transporter Choline Binding Protein In Complex With
Choline
pdb|2REG|B Chain B, Abc-transporter Choline Binding Protein In Complex With
Choline
pdb|2REJ|A Chain A, Abc-Transporter Choline Binding Protein In Unliganded
Semi- Closed Conformation
pdb|2REJ|B Chain B, Abc-Transporter Choline Binding Protein In Unliganded
Semi- Closed Conformation
pdb|2RF1|A Chain A, Crystal Structure Of Chox In An Unliganded Closed
Conformation
pdb|2RF1|B Chain B, Crystal Structure Of Chox In An Unliganded Closed
Conformation
pdb|2RIN|A Chain A, Abc-Transporter Choline Binding Protein In Complex With
Acetylcholine
pdb|2RIN|B Chain B, Abc-Transporter Choline Binding Protein In Complex With
Acetylcholine
pdb|3HCQ|A Chain A, Structural Analysis Of The Choline Binding Protein Chox In
A Semi- Closed And Ligand-Free Conformation
pdb|3HCQ|B Chain B, Structural Analysis Of The Choline Binding Protein Chox In
A Semi- Closed And Ligand-Free Conformation
Length = 298
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 169 MGDNLNNIPHPGPIIYAWARDAPSLILP--EGVGFKVGGD 206
MG LN+ P AW +D P I P GV K GGD
Sbjct: 241 MGKILNDGEDPEKAAAAWLKDNPQSIEPWLSGVATKDGGD 280
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,762,825
Number of Sequences: 62578
Number of extensions: 642809
Number of successful extensions: 1511
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1454
Number of HSP's gapped (non-prelim): 41
length of query: 390
length of database: 14,973,337
effective HSP length: 101
effective length of query: 289
effective length of database: 8,652,959
effective search space: 2500705151
effective search space used: 2500705151
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)