Query psy9901
Match_columns 390
No_of_seqs 209 out of 413
Neff 5.8
Searched_HMMs 29240
Date Fri Aug 16 22:34:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9901.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9901hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yi9_A PAM, peptidyl-glycine a 100.0 1.5E-61 5.2E-66 475.9 24.9 265 98-378 18-305 (309)
2 1yi9_A PAM, peptidyl-glycine a 99.8 1.6E-18 5.6E-23 170.1 11.0 153 14-173 125-304 (309)
3 1gr3_A Collagen X; extracellul 24.1 78 0.0027 27.3 4.4 50 275-326 73-136 (160)
4 1o91_A Collagen alpha 1(VIII) 20.6 98 0.0033 27.1 4.4 50 275-326 91-154 (178)
5 2wnv_C C1Q chain C, complement 20.3 1.2E+02 0.0041 24.9 4.7 49 275-326 48-109 (131)
6 2wnv_B C1Q chain B, complement 14.0 2.1E+02 0.007 23.6 4.6 49 275-326 47-111 (136)
7 1nct_A Titin; cell adhesion, g 12.1 1.6E+02 0.0056 22.1 3.3 27 311-337 23-49 (106)
8 3hqx_A UPF0345 protein aciad03 12.1 2.8E+02 0.0097 22.8 4.7 52 61-120 58-110 (111)
9 3v2d_4 50S ribosomal protein L 11.5 69 0.0024 24.4 0.8 29 46-75 31-59 (71)
10 2ka3_A Emilin-1; C1Q-like doma 10.2 2.4E+02 0.0081 24.1 3.9 28 275-303 57-84 (162)
No 1
>1yi9_A PAM, peptidyl-glycine alpha-amidating monooxygenase; bioactive peptide activation, ascorbate, oxidoreductase; 1.70A {Rattus norvegicus} SCOP: b.121.1.2 b.121.1.2 PDB: 1sdw_A* 3mib_A 3mic_A 3mid_A 3mie_A 3mif_A 3mig_A 3mih_A 3mlj_A 3mlk_A 3mll_A 1yip_A 1phm_A 1opm_A 3phm_A 1yjl_A 1yjk_A
Probab=100.00 E-value=1.5e-61 Score=475.88 Aligned_cols=265 Identities=31% Similarity=0.503 Sum_probs=212.1
Q ss_pred ccCcccceEecCCCeeeEEEEeecC---C-CeeEEEccCCCccceEEEEEEEEcCCCCccccccCCCCCCCCccccCCCC
Q psy9901 98 FYPVEVNVTIHKGDVMAARCVMKNY---R-NHETYVGSTGQDEMCNFYLMYWVENSSPLETKYCFSEGPPNYYWGMGDNL 173 (390)
Q Consensus 98 F~pv~~~v~I~~gD~~ayrC~~~~~---~-~~~~~iG~~gndemVHH~imY~c~~~~~~~~~~C~spg~P~~~W~C~~~~ 173 (390)
|.....++ ||.++ ++|||+++++ + ++++.++..||+++||||++|.|.... +....|+|+++.
T Consensus 18 ~~l~mp~v-~P~~~-~~Y~C~~~~lp~~~~~hIv~~Ep~gn~~~VHHmlly~c~~~~-----------~~~~~~~C~~~~ 84 (309)
T 1yi9_A 18 LDIRMPGV-TPKES-DTYFCMSMRLPVDEEAFVIDFKPRASMDTVHHMLLFGCNMPS-----------STGSYWFCDEGT 84 (309)
T ss_dssp EEEECSSB-CCCSS-SEEEEEEEECSCSSCEEEEEEEEECCTTTEEEEEEEEESSBS-----------CCSSSEEGGGCS
T ss_pred EEEECCCC-CCCCC-ceEEEEEEECCCCCCEEEEEEEEeCCCCcEEEEEEEEcCCCC-----------CCCCCccCCCCc
Confidence 33344556 77766 5899999974 3 344466666999999999999998532 123567775332
Q ss_pred CCCCCCCCceeEeecCCCCcccCCCcceeecCCCCccEEEEEEeeccccCCCCCcccCCCceEEEecCCcceeeEEEeec
Q psy9901 174 NNIPHPGPIIYAWARDAPSLILPEGVGFKVGGDTAIQYLVLQVHYAHVEGFRDGHTDSSGVFLQYTRRPLTKEAGVLLLG 253 (390)
Q Consensus 174 ~~ip~~~~il~aWA~Ga~~~~lP~gvG~~iG~~s~~~~lvLQvHY~np~~~~~g~~D~SGirL~~T~~~r~~~aGvl~~g 253 (390)
+ ..++.+|+|||+|++++.||+||||+||+.++++||||||||+|+.++.+++.|+|||||+||+++|+++||+|+++
T Consensus 85 c--~~~~~il~aWa~Ga~~~~~P~~vG~~ig~~~~~~ylvlqvHY~n~~~~~~~~~D~SGirL~~T~~~r~~~aGvl~l~ 162 (309)
T 1yi9_A 85 C--TDKANILYAWARNAPPTRLPKGVGFRVGGETGSKYFVLQVHYGDISAFRDNHKDCSGVSVHLTRVPQPLIAGMYLMM 162 (309)
T ss_dssp B--SSCCEEEEEEETTSCCCCCCTTEEEEESTTTSBCEEEEEEEECCCCTTCCCCCBCCEEEEEEESSCCSEEEEEEEEE
T ss_pred c--CCCCceEEEECCCCCCccCCCCcceECCCCCCCCEEEEEEeECCCccCCCCCccCCeEEEEECCCCCceeeEEEEec
Confidence 1 12468999999999999999999999999888999999999999755457899999999999999999999999988
Q ss_pred C-CCccCCCCccee-EeEEeecCCCceEEEEeccccccccceEEEEEEecCeecC------CC-cce------EEeCCCC
Q psy9901 254 T-GGKIPALSVENM-ETSCIMMEDKEIHPFAYRTHTHALGKEVQGYVVKKNNNLN------RK-DEW------LLLGKRD 318 (390)
Q Consensus 254 ~-~~~IPPg~~~~~-~~~C~~~~~~~I~ifa~~~H~HllGr~v~~~~~R~g~el~------~~-~e~------~~l~~gD 318 (390)
+ .+.||||++++. +++|++.. .+|+|||+++|||++||+|+++++|+|+|+. +. |++ ..|.+||
T Consensus 163 ~~~~~IPPg~~~~~~~~~Ct~~~-~~i~ifa~~~H~Hl~G~~v~~~~vr~G~e~~I~~~d~~~~Q~~y~l~~~v~i~~GD 241 (309)
T 1yi9_A 163 SVDTVIPPGEKVVNADISCQYKM-YPMHVFAYRVHTHHLGKVVSGYRVRNGQWTLIGRQNPQLPQAFYPVEHPVDVTFGD 241 (309)
T ss_dssp ECCCCCCSSCSEEEEEEEEECCS-SCEEEEEEEEEESSCEEEEEEEEEETTEEEEEEEECTTSCCSCEEEEEEEEECTTC
T ss_pred cCCceeCcCCcceEEeeEEeccC-CceEEEEEEceeccCceEEEEEEEECCEEEEcccCCCCCceeEEEcCCceEECCCC
Confidence 7 899999999886 66798754 7899999999999999999999999998642 11 433 4577899
Q ss_pred CceeEEEEecCCCccccc-C---CccccccceeeeecCCCCccccccccCCCCCceeccCCCCC
Q psy9901 319 PLTPQMFYPVEVNVTIHK-G---QDEMCNFYLMYWVENSSPLETKYCFSEGPPNYYWGMGDNLN 378 (390)
Q Consensus 319 ~l~~qc~Y~~~~~~~i~~-G---~dEMC~~yl~YYP~~~~~~~~~~C~s~~~~~~~~~~~~~~~ 378 (390)
.|..+|+||++++..+++ | .||||++|+||||+......++.|.|.++|+++|+..++.|
T Consensus 242 ~L~~~C~yd~s~r~~~t~~G~~t~dEMC~~yi~Yyp~~~~~~~~~~C~~~~~~~~~~~~p~~~~ 305 (309)
T 1yi9_A 242 ILAARCVFTGEGRTEATHIGGTSSDEICNLYIMYYMEAKYALSFMTCTKNVAPDMFRTIPAEAN 305 (309)
T ss_dssp EEEEEEEEECC--------------CCEEEEEEEEEEGGGCCSEEEECCBSCGGGGGGCCGGGG
T ss_pred EEEEEEEecCCCCCcceeCCCCccchhhheeEEEEcCcccccchhhhcCCCChHHhccCCcccC
Confidence 999999999998877664 5 99999999999999666667899999999999999888765
No 2
>1yi9_A PAM, peptidyl-glycine alpha-amidating monooxygenase; bioactive peptide activation, ascorbate, oxidoreductase; 1.70A {Rattus norvegicus} SCOP: b.121.1.2 b.121.1.2 PDB: 1sdw_A* 3mib_A 3mic_A 3mid_A 3mie_A 3mif_A 3mig_A 3mih_A 3mlj_A 3mlk_A 3mll_A 1yip_A 1phm_A 1opm_A 3phm_A 1yjl_A 1yjk_A
Probab=99.76 E-value=1.6e-18 Score=170.10 Aligned_cols=153 Identities=31% Similarity=0.589 Sum_probs=116.7
Q ss_pred eeeee---eecCCcCceEEeeeeec-cCCCccceeee--------------eeccccc----cccccc----ccccceeE
Q psy9901 14 VHCDL---IRLNNTDHIVHTSDISI-SDKNIVGTQIF--------------GYENPCK----TCHPSS----KLKNSKEV 67 (390)
Q Consensus 14 ~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--------------~~~~~~~----~~~~~~----~~~~~~~v 67 (390)
+|-+. ++.+-+|.|++.+-|.- .++..+|..++ .++..|+ .+|+|| +|-+||.|
T Consensus 125 vHY~n~~~~~~~~~D~SGirL~~T~~~r~~~aGvl~l~~~~~~IPPg~~~~~~~~~Ct~~~~~i~ifa~~~H~Hl~G~~v 204 (309)
T 1yi9_A 125 VHYGDISAFRDNHKDCSGVSVHLTRVPQPLIAGMYLMMSVDTVIPPGEKVVNADISCQYKMYPMHVFAYRVHTHHLGKVV 204 (309)
T ss_dssp EEECCCCTTCCCCCBCCEEEEEEESSCCSEEEEEEEEEECCCCCCSSCSEEEEEEEEECCSSCEEEEEEEEEESSCEEEE
T ss_pred EeECCCccCCCCCccCCeEEEEECCCCCceeeEEEEeccCCceeCcCCcceEEeeEEeccCCceEEEEEEceeccCceEE
Confidence 56655 45688999999987765 66666666433 3346786 599999 79999999
Q ss_pred EeEEeecCCccCCCCcEEEeeecCCCCCccccCcccceEecCCCeeeEEEEeecC-CCeeEEEccCCCccceEEEEEEEE
Q psy9901 68 QGYVVKKNNNLNRKDEWLLLGKRDPLTPQMFYPVEVNVTIHKGDVMAARCVMKNY-RNHETYVGSTGQDEMCNFYLMYWV 146 (390)
Q Consensus 68 sGy~v~~~~~~~~~~~w~ligk~~P~~PQ~F~pv~~~v~I~~gD~~ayrC~~~~~-~~~~~~iG~~gndemVHH~imY~c 146 (390)
++|.++ +|+|.+|++.|++|||.||++++.++|++||.+.++|+|++. ++..|+.|....||||+.|+||+-
T Consensus 205 ~~~~vr-------~G~e~~I~~~d~~~~Q~~y~l~~~v~i~~GD~L~~~C~yd~s~r~~~t~~G~~t~dEMC~~yi~Yyp 277 (309)
T 1yi9_A 205 SGYRVR-------NGQWTLIGRQNPQLPQAFYPVEHPVDVTFGDILAARCVFTGEGRTEATHIGGTSSDEICNLYIMYYM 277 (309)
T ss_dssp EEEEEE-------TTEEEEEEEECTTSCCSCEEEEEEEEECTTCEEEEEEEEECC--------------CCEEEEEEEEE
T ss_pred EEEEEE-------CCEEEEcccCCCCCceeEEEcCCceEECCCCEEEEEEEecCCCCCcceeCCCCccchhhheeEEEEc
Confidence 999995 367999999999999999999999999999999999999985 677788999999999999999998
Q ss_pred cCCCCccccccCCCCCCCCccccCCCC
Q psy9901 147 ENSSPLETKYCFSEGPPNYYWGMGDNL 173 (390)
Q Consensus 147 ~~~~~~~~~~C~spg~P~~~W~C~~~~ 173 (390)
..+..+....|.+.++|..+|...+.+
T Consensus 278 ~~~~~~~~~~C~~~~~~~~~~~~p~~~ 304 (309)
T 1yi9_A 278 EAKYALSFMTCTKNVAPDMFRTIPAEA 304 (309)
T ss_dssp EGGGCCSEEEECCBSCGGGGGGCCGGG
T ss_pred CcccccchhhhcCCCChHHhccCCccc
Confidence 776666678899999999999865443
No 3
>1gr3_A Collagen X; extracellular matrix, connective tissue; HET: CPS; 2.0A {Homo sapiens} SCOP: b.22.1.1
Probab=24.12 E-value=78 Score=27.26 Aligned_cols=50 Identities=20% Similarity=0.142 Sum_probs=35.3
Q ss_pred CCceEEEEeccccccccceEEEEEEecCeecC--------C-C-----cceEEeCCCCCceeEEEE
Q psy9901 275 DKEIHPFAYRTHTHALGKEVQGYVVKKNNNLN--------R-K-----DEWLLLGKRDPLTPQMFY 326 (390)
Q Consensus 275 ~~~I~ifa~~~H~HllGr~v~~~~~R~g~el~--------~-~-----~e~~~l~~gD~l~~qc~Y 326 (390)
..+++.|++..+.. ++.+.+.+++||+.+. + . +-.-.|.+||.++++...
T Consensus 73 v~GvY~Fsft~~~~--~~~~~v~L~~Ng~~i~~~~~~~~~~~~~~~S~s~vL~L~~GD~Vwv~~~~ 136 (160)
T 1gr3_A 73 IPGIYYFSYHVHVK--GTHVWVGLYKNGTPVMYTYDEYTKGYLDQASGSAIIDLTENDQVWLQLPN 136 (160)
T ss_dssp SCEEEEEEEEEEEE--EEEEEEEEEETTEEEEEEEECCBTTBCEEEEEEEEEEECTTCEEEEECCC
T ss_pred cCCEEEEEEEEEeC--CCeEEEEEEECCEEEEEEeeccCCCcccEEeEEEEEEECCCCEEEEEEec
Confidence 46899999876654 6788888889987431 0 0 122468899999999853
No 4
>1o91_A Collagen alpha 1(VIII) chain; C1Q_LIKE_domain, extracellular matrix, adhesion, connective tissue, repeat; HET: CPS; 1.9A {Mus musculus} SCOP: b.22.1.1
Probab=20.64 E-value=98 Score=27.14 Aligned_cols=50 Identities=28% Similarity=0.237 Sum_probs=35.3
Q ss_pred CCceEEEEeccccccccceEEEEEEecCeecC----C-----C-----cceEEeCCCCCceeEEEE
Q psy9901 275 DKEIHPFAYRTHTHALGKEVQGYVVKKNNNLN----R-----K-----DEWLLLGKRDPLTPQMFY 326 (390)
Q Consensus 275 ~~~I~ifa~~~H~HllGr~v~~~~~R~g~el~----~-----~-----~e~~~l~~gD~l~~qc~Y 326 (390)
..+++.|++..++ .++.+.+.+++||+.+. . . +-.-.|.+||.+++|...
T Consensus 91 v~GvY~Fsft~~~--~~~~~~v~L~~Ng~~i~~~~~~~~~~~~~~~S~s~vL~L~~GD~Vwl~l~~ 154 (178)
T 1o91_A 91 VPGVYYFAYHVHC--KGGNVWVALFKNNEPMMYTYDEYKKGFLDQASGSAVLLLRPGDQVFLQMPS 154 (178)
T ss_dssp SCEEEEEEEEEEE--EEEEEEEEEEETTEEEEEEEECCBTTBCEEEEEEEEEEECTTCEEEEECCC
T ss_pred cCeEEEEEEEEEe--ccceEEEEEEECCEEEEEEEcccCCCcceEEeEEEEEEECCCCEEEEEEec
Confidence 3689999987665 36788888889987431 0 0 123468899999998853
No 5
>2wnv_C C1Q chain C, complement C1Q subcomponent subunit C; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_C 2wnu_C* 2jg9_C* 1pk6_C
Probab=20.29 E-value=1.2e+02 Score=24.87 Aligned_cols=49 Identities=10% Similarity=0.016 Sum_probs=34.3
Q ss_pred CCceEEEEeccccccccceEEEEEEecCeecC------C-------CcceEEeCCCCCceeEEEE
Q psy9901 275 DKEIHPFAYRTHTHALGKEVQGYVVKKNNNLN------R-------KDEWLLLGKRDPLTPQMFY 326 (390)
Q Consensus 275 ~~~I~ifa~~~H~HllGr~v~~~~~R~g~el~------~-------~~e~~~l~~gD~l~~qc~Y 326 (390)
..+++.|++..+.+. .+.+.+.+||.... + .+-.-.|.+||.++++...
T Consensus 48 ~~G~Y~Fs~~~~~~~---~~~v~L~~Ng~~~~~~~~~~~~~~~~~S~~~~L~L~~GD~V~v~~~~ 109 (131)
T 2wnv_C 48 VPGLYYFVYHASHTA---NLCVLLYRSGVKVVTFCGHTSKTNQVNSGGVLLRLQVGEEVWLAVND 109 (131)
T ss_dssp SCEEEEEEEEEEESS---CEEEEEEETTEEEEEEEECCSSSCEEEEEEEEEEECTTCEEEEEEEE
T ss_pred cCCEEEEEEEEEECC---eEEEEEEECCeEEEEEEecCCCcccEEeeeEEEEECCCCEEEEEEeC
Confidence 468899998877663 78888888885321 0 1123468899999999864
No 6
>2wnv_B C1Q chain B, complement C1Q subcomponent subunit B; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_B 2wnu_B* 2jg9_B* 1pk6_B
Probab=13.95 E-value=2.1e+02 Score=23.60 Aligned_cols=49 Identities=10% Similarity=0.049 Sum_probs=34.3
Q ss_pred CCceEEEEeccccccccceEEEEEEecCe--ec-C-------C------CcceEEeCCCCCceeEEEE
Q psy9901 275 DKEIHPFAYRTHTHALGKEVQGYVVKKNN--NL-N-------R------KDEWLLLGKRDPLTPQMFY 326 (390)
Q Consensus 275 ~~~I~ifa~~~H~HllGr~v~~~~~R~g~--el-~-------~------~~e~~~l~~gD~l~~qc~Y 326 (390)
..+++.|++..+.+. .+.+.+.+||. .. . + .+-.-.|.+||.++++...
T Consensus 47 ~~G~Y~Fs~~~~~~~---~~~v~L~~Ng~~v~~~~~~~~~~~~~~~~~S~~~~L~L~~GD~V~v~~~~ 111 (136)
T 2wnv_B 47 VPGLYYFTYHASSRG---NLCVNLMRGRERAQKVVTFCDYAYNTFQVTTGGMVLKLEQGENVFLQATD 111 (136)
T ss_dssp SCEEEEEEEEEEESS---CEEEEEEEESSSCEEEEEEEECCSSSCEEEEEEEEEEECTTCEEEEEEEE
T ss_pred cCeEEEEEEEEEECC---eEEEEEEECCcceEEEEEEEecCCCcccEEeeeEEEEECCCCEEEEEEeC
Confidence 468999998877763 78888888886 21 0 0 0123468899999999864
No 7
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A
Probab=12.12 E-value=1.6e+02 Score=22.06 Aligned_cols=27 Identities=7% Similarity=-0.266 Sum_probs=20.1
Q ss_pred eEEeCCCCCceeEEEEecCCCcccccC
Q psy9901 311 WLLLGKRDPLTPQMFYPVEVNVTIHKG 337 (390)
Q Consensus 311 ~~~l~~gD~l~~qc~Y~~~~~~~i~~G 337 (390)
...+..|+++.++|.........|.|=
T Consensus 23 ~~~v~~G~~v~L~C~~~g~p~p~v~W~ 49 (106)
T 1nct_A 23 SMTVYEGESARFSCDTDGEPVPTVTWL 49 (106)
T ss_dssp CEEESSSSCEECCEEEECSSCCBCCBC
T ss_pred CEEEeCCCcEEEEEEEEEcCCCEEEEE
Confidence 466788999999999875555566663
No 8
>3hqx_A UPF0345 protein aciad0356; DUF1255,PF06865,PSI2,MCSG, structural genomics, protein STRU initiative, midwest center for structural genomics; 1.66A {Acinetobacter SP} SCOP: b.82.1.0
Probab=12.11 E-value=2.8e+02 Score=22.77 Aligned_cols=52 Identities=21% Similarity=0.299 Sum_probs=36.8
Q ss_pred cccceeEEeEEeecCCccCCCCcEEEeeecCCCCCcccc-CcccceEecCCCeeeEEEEee
Q psy9901 61 LKNSKEVQGYVVKKNNNLNRKDEWLLLGKRDPLTPQMFY-PVEVNVTIHKGDVMAARCVMK 120 (390)
Q Consensus 61 ~~~~~~vsGy~v~~~~~~~~~~~w~ligk~~P~~PQ~F~-pv~~~v~I~~gD~~ayrC~~~ 120 (390)
.-++.+|+|=.--. +....+|..+..+ +.|. |.+..+.|.-....+|-|.+.
T Consensus 58 ~E~MevvsG~l~V~---Lpg~~eW~~~~aG-----esF~VpanssF~lkv~~~~~Y~C~y~ 110 (111)
T 3hqx_A 58 PERMEIISGECRVK---IADSTESELFRAG-----QSFYVPGNSLFKIETDEVLDYVCHLE 110 (111)
T ss_dssp CEEEEEEESEEEEE---ETTCSSCEEEETT-----CEEEECTTCEEEEECSSCEEEEEEEC
T ss_pred cEEEEEEEeEEEEE---cCCcccCEEeCCC-----CEEEECCCCcEEEEECcceeEEEEcC
Confidence 56788999954322 3455789987655 4565 666678888888889999773
No 9
>3v2d_4 50S ribosomal protein L31; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_3 2hgj_3 2hgu_3 2j03_4 2v47_4 2v49_4 2wdi_4 2wdj_4 2wdl_4 2wdn_4 2wh2_4 2wrj_4 2wrl_4 2wro_4 2wrr_4 2x9s_4 2x9u_4 2xg0_4 2xg2_4 2xqe_4 ...
Probab=11.53 E-value=69 Score=24.37 Aligned_cols=29 Identities=21% Similarity=0.190 Sum_probs=12.4
Q ss_pred eeecccccccccccccccceeEEeEEeecC
Q psy9901 46 FGYENPCKTCHPSSKLKNSKEVQGYVVKKN 75 (390)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~vsGy~v~~~ 75 (390)
+.+|+ |+.+|||-|-+.--+-++=+|+.+
T Consensus 31 i~vdi-~S~~HPFyTGkqk~vdt~GRVekF 59 (71)
T 3v2d_4 31 IYVEV-CSKCHPFYTGQQRFVDTEGRVERF 59 (71)
T ss_dssp EEESC-CTTTSSSSSCC-------------
T ss_pred EEEEe-cCCCCCCCCCCEEEEcccCcHHHH
Confidence 45654 889999998655334455567665
No 10
>2ka3_A Emilin-1; C1Q-like domain, homotrimeric protein complex, beta-sandwich, structural protein, cell adhesion, extracellular matrix; NMR {Homo sapiens} PDB: 2oii_A
Probab=10.22 E-value=2.4e+02 Score=24.13 Aligned_cols=28 Identities=11% Similarity=0.039 Sum_probs=19.2
Q ss_pred CCceEEEEeccccccccceEEEEEEecCe
Q psy9901 275 DKEIHPFAYRTHTHALGKEVQGYVVKKNN 303 (390)
Q Consensus 275 ~~~I~ifa~~~H~HllGr~v~~~~~R~g~ 303 (390)
..+++.|++..+.+. +..+.+...+||.
T Consensus 57 v~GvY~Fsf~~~~~~-~~~~~~~L~~N~~ 84 (162)
T 2ka3_A 57 LAGRYLLSAVLTGHR-HEKVEAVLSRSNQ 84 (162)
T ss_dssp CCEEEEEEECCCCCT-TCCEEEEECTTTS
T ss_pred CCeEEEEEEEEEEeC-CCeEEEEEEECCE
Confidence 468889988766653 4556666777765
Done!