RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy9901
         (390 letters)



>gnl|CDD|217685 pfam03712, Cu2_monoox_C, Copper type II ascorbate-dependent
           monooxygenase, C-terminal domain.  The N and C-terminal
           domains of members of this family adopt the same PNGase
           F-like fold.
          Length = 157

 Score =  128 bits (323), Expect = 8e-36
 Identities = 57/155 (36%), Positives = 76/155 (49%), Gaps = 34/155 (21%)

Query: 245 KEAGVLLLGTGGK-IPALSVE-NMETSCIMMEDKEIHPFAYRTHTHALGKEVQGYVVKKN 302
            +AG++LLG+G   IP       +E SC +   K + PFAYRTHTH LG+ V GY+V+  
Sbjct: 2   YDAGIMLLGSGYFAIPPGQTAYPVEGSCEIECTKTMFPFAYRTHTHLLGRVVSGYLVRDG 61

Query: 303 NNLNRKDEWLLLGKRDPLTP--QMFYPVEVNVTIHKG----------------------- 337
                  EW L+G+ DP  P  Q FYP+E  V +  G                       
Sbjct: 62  E------EWTLIGRDDPYDPNWQAFYPLESPVEVLPGDKLAARCTYDSTSRNTPVLGGET 115

Query: 338 -QDEMCNFYLMYWVENSSPLETKYCFSEGPPNYYW 371
             DEMCNFY+MY+ + S     K C S G P+ Y+
Sbjct: 116 TSDEMCNFYIMYYPDQSELEPCKSCVSNGTPDDYF 150



 Score =  112 bits (281), Expect = 1e-29
 Identities = 43/106 (40%), Positives = 57/106 (53%), Gaps = 9/106 (8%)

Query: 65  KEVQGYVVKKNNNLNRKDEWLLLGKRDPLTP--QMFYPVEVNVTIHKGDVMAARCVMKNY 122
           + V GY+V+         EW L+G+ DP  P  Q FYP+E  V +  GD +AARC   + 
Sbjct: 51  RVVSGYLVRDGE------EWTLIGRDDPYDPNWQAFYPLESPVEVLPGDKLAARCTYDST 104

Query: 123 -RNHETYVGSTGQDEMCNFYLMYWVENSSPLETKYCFSEGPPNYYW 167
            RN     G T  DEMCNFY+MY+ + S     K C S G P+ Y+
Sbjct: 105 SRNTPVLGGETTSDEMCNFYIMYYPDQSELEPCKSCVSNGTPDDYF 150


>gnl|CDD|216290 pfam01082, Cu2_monooxygen, Copper type II ascorbate-dependent
           monooxygenase, N-terminal domain.  The N and C-terminal
           domains of members of this family adopt the same PNGase
           F-like fold.
          Length = 128

 Score = 71.9 bits (177), Expect = 2e-15
 Identities = 22/48 (45%), Positives = 31/48 (64%), Gaps = 1/48 (2%)

Query: 182 IIYAWARDAPSLILPEGVGFKVGGDTAIQYLVLQVHYAHVEGFRDGHT 229
           ++ AWAR AP  + P+ VG  +GG   I+YLVL+VHY +   F+DG  
Sbjct: 82  VVAAWARGAPPFVYPKEVGLPIGGSGGIRYLVLEVHYNNPN-FKDGEV 128


>gnl|CDD|239233 cd02905, Macro_GDAP2_like, Macro domain, GDAP2_like family. The
          macro domain is a high-affinity ADP-ribose binding
          module found in a variety of proteins as a stand-alone
          domain or in combination with other domains like in
          histone macroH2A and some PARPs (poly ADP-ribose
          polymerases).  Some macro domains recognize poly
          ADP-ribose as a ligand. Previously identified as
          displaying an Appr-1"-p (ADP-ribose-1"-monophosphate)
          processing activity, the macro domain may play roles in
          distinct ADP-ribose pathways, such as the
          ADP-ribosylation of proteins, an important
          post-translational modification which occurs in DNA
          repair, transcription, chromatin biology, and long-term
          memory formation, among other processes. This family
          contains proteins similar to human GDAP2, the
          ganglioside induced differentiation associated protein
          2, whose gene is expressed at a higher level in
          differentiated Neuro2a cells compared with
          non-differentiated cells. GDAP2 contains an N-terminal
          macro domain and a C-terminal Sec14p-like lipid binding
          domain. It is specifically expressed in brain and
          testis.
          Length = 140

 Score = 28.5 bits (64), Expect = 3.1
 Identities = 9/29 (31%), Positives = 18/29 (62%)

Query: 23 NTDHIVHTSDISISDKNIVGTQIFGYENP 51
          N D IV++++ +++DKN +  +IF     
Sbjct: 14 NVDAIVNSTNETLTDKNPISDKIFARAGS 42


>gnl|CDD|183455 PRK12342, PRK12342, hypothetical protein; Provisional.
          Length = 254

 Score = 28.2 bits (63), Expect = 7.5
 Identities = 8/18 (44%), Positives = 10/18 (55%)

Query: 246 EAGVLLLGTGGKIPALSV 263
           EA   L   G +I AL+V
Sbjct: 42  EAASQLATDGDEIAALTV 59


>gnl|CDD|238602 cd01197, INT_FimBE_C, FimB and FimE and related proteins, DNA
           breaking-rejoining enzymes, integrase/recombinases,
           catalytic domain. This CD includes those proteins
           similar to E.coli FimE and FimB regulatory proteins and
           Proteus mirabilis MrpI.
          Length = 180

 Score = 27.4 bits (61), Expect = 9.9
 Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 18/73 (24%)

Query: 227 GHTDSSGVFLQYTRRPLTKEAGVLLLGTGGKIPALSVENMETSCIMMEDKEIHPFAYRTH 286
           G  DS  +FL     PL+++    L+   G    LS+             ++HP   R  
Sbjct: 92  GLPDSDWIFLSRRGGPLSRQQVYKLIRRLGAQAGLSI-------------KVHPHMLR-- 136

Query: 287 THALGKEV--QGY 297
            HA G  +  QG 
Sbjct: 137 -HACGYALANQGA 148


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.319    0.137    0.437 

Gapped
Lambda     K      H
   0.267   0.0715    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,892,897
Number of extensions: 1868748
Number of successful extensions: 1269
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1263
Number of HSP's successfully gapped: 11
Length of query: 390
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 291
Effective length of database: 6,546,556
Effective search space: 1905047796
Effective search space used: 1905047796
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.9 bits)