RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9901
         (390 letters)



>d1sdwa2 b.121.1.2 (A:199-356) Peptidylglycine alpha-hydroxylating
           monooxygenase, PHM {Rat (Rattus norvegicus) [TaxId:
           10116]}
          Length = 158

 Score = 98.2 bits (244), Expect = 3e-25
 Identities = 53/165 (32%), Positives = 72/165 (43%), Gaps = 35/165 (21%)

Query: 245 KEAGVLLLGTGGKI--PALSVENMETSCIMMEDKEIHPFAYRTHTHALGKEVQGYVVKKN 302
             AG+ L+ +   +  P   V N + SC   +   +H FAYR HTH LGK V GY V   
Sbjct: 2   LIAGMYLMMSVDTVIPPGEKVVNADISCQY-KMYPMHVFAYRVHTHHLGKVVSGYRV--- 57

Query: 303 NNLNRKDEWLLLGKRDPLTPQMFYPVEVNVTIHKG------------------------Q 338
               R  +W L+G+++P  PQ FYPVE  V +  G                         
Sbjct: 58  ----RNGQWTLIGRQNPQLPQAFYPVEHPVDVTFGDILAARCVFTGEGRTEATHIGGTSS 113

Query: 339 DEMCNFYLMYWVENSSPLETKYCFSEGPPNYYWGMGDNLNNIPHP 383
           DEMCN Y+MY++E    L    C     P+ +  +     NIP P
Sbjct: 114 DEMCNLYIMYYMEAKYALSFMTCTKNVAPDMFRTIPA-EANIPIP 157



 Score = 95.1 bits (236), Expect = 4e-24
 Identities = 40/101 (39%), Positives = 56/101 (55%), Gaps = 2/101 (1%)

Query: 80  RKDEWLLLGKRDPLTPQMFYPVEVNVTIHKGDVMAARCVMKNY-RNHETYVGSTGQDEMC 138
           R  +W L+G+++P  PQ FYPVE  V +  GD++AARCV     R   T++G T  DEMC
Sbjct: 58  RNGQWTLIGRQNPQLPQAFYPVEHPVDVTFGDILAARCVFTGEGRTEATHIGGTSSDEMC 117

Query: 139 NFYLMYWVENSSPLETKYCFSEGPPNYYWGMGDNLNNIPHP 179
           N Y+MY++E    L    C     P+ +  +     NIP P
Sbjct: 118 NLYIMYYMEAKYALSFMTCTKNVAPDMFRTIPA-EANIPIP 157


>d1sdwa1 b.121.1.2 (A:45-198) Peptidylglycine alpha-hydroxylating
           monooxygenase, PHM {Rat (Rattus norvegicus) [TaxId:
           10116]}
          Length = 154

 Score = 84.3 bits (208), Expect = 3e-20
 Identities = 39/86 (45%), Positives = 48/86 (55%), Gaps = 2/86 (2%)

Query: 157 CFSEGPPNYYWGMGDNLNNIPHPGPIIYAWARDAPSLILPEGVGFKVGGDTAIQYLVLQV 216
           C        YW   +          I+YAWAR+AP   LP+GVGF+VGG+T  +Y VLQV
Sbjct: 70  CNMPSSTGSYWFCDEG--TCTDKANILYAWARNAPPTRLPKGVGFRVGGETGSKYFVLQV 127

Query: 217 HYAHVEGFRDGHTDSSGVFLQYTRRP 242
           HY  +  FRD H D SGV +  TR P
Sbjct: 128 HYGDISAFRDNHKDCSGVSVHLTRVP 153


>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain
           [TaxId: 10090]}
          Length = 115

 Score = 26.3 bits (57), Expect = 2.8
 Identities = 6/40 (15%), Positives = 12/40 (30%)

Query: 131 STGQDEMCNFYLMYWVENSSPLETKYCFSEGPPNYYWGMG 170
                +    +L          +  +C + G P   +G G
Sbjct: 70  ILESSDSRRPFLSIMNVKPEDSDFYFCATVGSPKMVFGTG 109



 Score = 25.2 bits (54), Expect = 7.2
 Identities = 6/32 (18%), Positives = 11/32 (34%)

Query: 343 NFYLMYWVENSSPLETKYCFSEGPPNYYWGMG 374
             +L          +  +C + G P   +G G
Sbjct: 78  RPFLSIMNVKPEDSDFYFCATVGSPKMVFGTG 109


>d1uqwa_ c.94.1.1 (A:) Hypothetical protein YliB {Escherichia coli
           [TaxId: 562]}
          Length = 487

 Score = 27.8 bits (60), Expect = 3.0
 Identities = 7/42 (16%), Positives = 16/42 (38%)

Query: 271 IMMEDKEIHPFAYRTHTHALGKEVQGYVVKKNNNLNRKDEWL 312
           I+ ++    P        A  K + G+ +  +   + +D  L
Sbjct: 445 IIWQESPWIPLVVEKLVSAHSKNLTGFWIMPDTGFSFEDADL 486


>d1xvia_ c.108.1.10 (A:) Putative mannosyl-3-phosphoglycerate
           phosphatase MPGP (YedP) {Escherichia coli [TaxId: 562]}
          Length = 232

 Score = 27.0 bits (58), Expect = 3.5
 Identities = 16/172 (9%), Positives = 40/172 (23%)

Query: 6   RTPLEYRAVHCDLIRLNNTDHIVHTSDISISDKNIVGTQIFGYENPCKTCHPSSKLKNSK 65
           +T  E   +   L          + + I ++++           +       S  L   +
Sbjct: 46  KTSAEMLYLQKTLGLQGLPLIAENGAVIQLAEQWQEIDGFPRIISGISHGEISLVLNTLR 105

Query: 66  EVQGYVVKKNNNLNRKDEWLLLGKRDPLTPQMFYPVEVNVTIHKGDVMAARCVMKNYRNH 125
           E + +     ++++        G                  I +                
Sbjct: 106 EKEHFKFTTFDDVDDATIAEWTGLSRSQAALTQLHEASVTLIWRDSDERMAQFTARLNEL 165

Query: 126 ETYVGSTGQDEMCNFYLMYWVENSSPLETKYCFSEGPPNYYWGMGDNLNNIP 177
                   +            + ++ +   Y    G      G+GD  N+ P
Sbjct: 166 GLQFMQGARFWHVLDASAGKDQAANWIIATYQQLSGKRPTTLGLGDGPNDAP 217


>d1sr8a_ e.54.1.1 (A:) Cobalamin biosynthesis protein CbiD {Archaeon
           Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 282

 Score = 27.1 bits (60), Expect = 3.8
 Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 170 GDNLNNIPHPGPIIYAWARDAPSLILPEGVGFKVGGDTAIQYLVLQVHYAHVE 222
           GD+  ++ + G I  A   +   +    GVG K G     +   LQ+    ++
Sbjct: 94  GDHEFDVTN-GIIFEAEVCETSGIFFGRGVGVKAGEKAVSRSAKLQILENFIK 145


>d1xoca1 c.94.1.1 (A:17-520) Oligo-peptide binding protein (OPPA)
           {Bacillus subtilis [TaxId: 1423]}
          Length = 504

 Score = 25.8 bits (55), Expect = 9.6
 Identities = 8/41 (19%), Positives = 18/41 (43%)

Query: 271 IMMEDKEIHPFAYRTHTHALGKEVQGYVVKKNNNLNRKDEW 311
            + ED+      Y  +  A+ + ++GY      +L   ++W
Sbjct: 460 KIAEDQPYTFLYYPNNHMAMPENLEGYKYHPKRDLYNIEKW 500


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.137    0.437 

Gapped
Lambda     K      H
   0.267   0.0484    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,543,560
Number of extensions: 72964
Number of successful extensions: 236
Number of sequences better than 10.0: 1
Number of HSP's gapped: 233
Number of HSP's successfully gapped: 15
Length of query: 390
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 303
Effective length of database: 1,213,086
Effective search space: 367565058
Effective search space used: 367565058
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.2 bits)