BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9903
(204 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2R5L|A Chain A, Crystal Structure Of Lactoperoxidase At 2.4a Resolution
pdb|3N8F|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Thiocyanate At 3.2 A Resolution
pdb|3N8F|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Thiocyanate At 3.2 A Resolution
pdb|3NIU|A Chain A, Crystal Structure Of The Complex Of Dimeric Goat
Lactoperoxidase With Diethylene Glycol At 2.9 A
Resolution
pdb|3NIU|B Chain B, Crystal Structure Of The Complex Of Dimeric Goat
Lactoperoxidase With Diethylene Glycol At 2.9 A
Resolution
pdb|3NAK|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Hypothiocyanite At 3.3 A Resolution
pdb|3NAK|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Hypothiocyanite At 3.3 A Resolution
pdb|3QF1|A Chain A, Crystal Structure Of The Complex Of Caprine
Lactoperoxidase With Diethylenediamine At 2.6a
Resolution
pdb|3RKE|A Chain A, Crystal Structure Of Goat Lactoperoxidase Complexed With A
Tightly Bound Inhibitor, 4-Aminophenyl-4h-Imidazole-1-Yl
Methanone At 2.3 A Resolution
pdb|3R55|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Pyrazinamide At 2.1 A Resolution
pdb|3SXV|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Amitrole At 2.1 A Resolution
Length = 595
Score = 111 bits (277), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/131 (43%), Positives = 84/131 (64%), Gaps = 6/131 (4%)
Query: 1 METDGLTQHLFEQVGSKVPYGLDLVSLNIQRGRDHGLPGYPKWRKYCGLSEPKTFDDLKD 60
M T L LF Q KV +G DL ++N+QR RDHG+PGY WR +CGLS+PKT L+
Sbjct: 412 MVTSELRNKLF-QPTHKV-HGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQA 469
Query: 61 HVDDESL-KLLSKIYKSVDDVDMYTGGLSEKPLEGGMLGPTMTCLIANQFVRMKSGDRYW 119
+ ++ L K L +YK+ D++D++ GG +E +E G +GP + CL+ QF +++ GDR+W
Sbjct: 470 VLKNKVLAKKLLDLYKTPDNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFW 529
Query: 120 YETSEQPQAFT 130
+E P FT
Sbjct: 530 WEN---PGVFT 537
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
Query: 149 YGLDLVSLNIQRGRDHGLPGYPRWRKYCGLSEPKTFDDLKDHVDDESL-KLLSKIYK 204
+G DL ++N+QR RDHG+PGY WR +CGLS+PKT L+ + ++ L K L +YK
Sbjct: 429 HGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQAVLKNKVLAKKLLDLYK 485
>pdb|2E9E|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Nitrate At 3.25 A Resolution
pdb|2E9E|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Nitrate At 3.25 A Resolution
pdb|2OJV|A Chain A, Crystal Structure Of A Ternary Complex Of Goat
Lactoperoxidase With Cyanide And Iodide Ions At 2.4 A
Resolution
pdb|2EFB|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Phosphate At 2.94 A Resolution
pdb|2EFB|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Phosphate At 2.94 A Resolution
pdb|2EHA|A Chain A, Crystal Structure Of Goat Lactoperoxidase Complexed With
Formate Anion At 3.3 A Resolution
pdb|2EHA|B Chain B, Crystal Structure Of Goat Lactoperoxidase Complexed With
Formate Anion At 3.3 A Resolution
Length = 595
Score = 111 bits (277), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/131 (43%), Positives = 84/131 (64%), Gaps = 6/131 (4%)
Query: 1 METDGLTQHLFEQVGSKVPYGLDLVSLNIQRGRDHGLPGYPKWRKYCGLSEPKTFDDLKD 60
M T L LF Q KV +G DL ++N+QR RDHG+PGY WR +CGLS+PKT L+
Sbjct: 412 MVTSELRNKLF-QPTHKV-HGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQA 469
Query: 61 HVDDESL-KLLSKIYKSVDDVDMYTGGLSEKPLEGGMLGPTMTCLIANQFVRMKSGDRYW 119
+ ++ L K L +YK+ D++D++ GG +E +E G +GP + CL+ QF +++ GDR+W
Sbjct: 470 VLKNKVLAKKLLDLYKTPDNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFW 529
Query: 120 YETSEQPQAFT 130
+E P FT
Sbjct: 530 WEN---PGVFT 537
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
Query: 149 YGLDLVSLNIQRGRDHGLPGYPRWRKYCGLSEPKTFDDLKDHVDDESL-KLLSKIYK 204
+G DL ++N+QR RDHG+PGY WR +CGLS+PKT L+ + ++ L K L +YK
Sbjct: 429 HGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQAVLKNKVLAKKLLDLYK 485
>pdb|2PT3|A Chain A, Crystal Structure Of Bovine Lactoperoxidase At 2.34 A
Resolution Reveals Multiple Anion Binding Sites
pdb|2PUM|A Chain A, Crystal Structure Of Bovine Lactoperoxidase Complex With
Catechol And Iodide At 2.7 A Resolution
pdb|2QPK|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Salicylhydroxamic Acid At 2.34 A Resolution
pdb|2QQT|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Acetyl Salicylic Acid At 2.5 A Resolution
pdb|2QRB|A Chain A, Crystal Structure Of Chloride Saturated Bovine
Lactoperoxidase At 2.5 A Resolution Shows Multiple
Halide Binding Sites
pdb|3BXI|A Chain A, Structure Of The Complex Of Bovine Lactoperoxidase With
Its Catalyzed Product Hypothiocyanate Ion At 2.3a
Resolution
pdb|3ERI|A Chain A, First Structural Evidence Of Substrate Specificity In
Mammalian Peroxidases: Crystal Structures Of Substrate
Complexes With Lactoperoxidases From Two Different
Species
pdb|3GC1|A Chain A, Crystal Structure Of Bovine Lactoperoxidase
pdb|3GCJ|A Chain A, Mode Of Ligand Binding And Assignment Of Subsites In
Mammalian Peroxidases: Crystal Structure Of
Lactoperoxidase Complexes With Acetyl Salycylic Acid,
Salicylhydroxamic Acid And Benzylhydroxamic Acid
pdb|3GCK|A Chain A, Mode Of Ligand Binding And Assignment Of Subsites In
Mammalian Peroxidases: Crystal Structure Of
Lactoperoxidase Complexes With Acetyl Salycylic Acid,
Salicylhydroxamic Acid And Benzylhydroxamic Acid
pdb|3GCL|A Chain A, Mode Of Ligand Binding And Assignment Of Subsites In
Mammalian Peroxidases: Crystal Structure Of
Lactoperoxidase Complexes With Acetyl Salycylic Acid,
Salicylhydroxamic Acid And Benzylhydroxamic Acid
pdb|3I6N|A Chain A, Mode Of Binding Of The Tuberculosis Prodrug Isoniazid To
Peroxidases: Crystal Structure Of Bovine Lactoperoxidase
With Isoniazid At 2.7 Resolution
pdb|3KRQ|A Chain A, Crystal Structure Of The Complex Of Lactoperoxidase With A
Potent Inhibitor Amino-Triazole At 2.2a Resolution
pdb|3NYH|A Chain A, Crystal Structure Of Lactoperoxidase Complexed
Simultaneously With Thiocyanate Ion, Iodide Ion, Bromide
Ion, Chloride Ion Through The Substrate Diffusion
Channel Reveals A Preferential Queue Of The Inorganic
Substrates Towards The Distal Heme Cavity
pdb|3OGW|A Chain A, Structure Of The Complex Of Bovine Lactoperoxidase With
Indomethacin At 1.9a Resolution
pdb|3PY4|A Chain A, Crystal Structure Of Bovine Lactoperoxidase In Complex
With Paracetamol At 2.4a Resolution
pdb|3Q9K|A Chain A, Crystal Structure Of Bovine Lactoperoxidase Complexed With
Phenyl Isothiocyanate At 1.7 A Resolution
pdb|3QL6|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Nimesulide At 1.7 A Resolution
pdb|3S4F|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With 1h- Pyrazolo[4,3-C] Pyridine At 1.99 A Resolution
pdb|3R4X|A Chain A, Crystal Structure Of Bovine Lactoperoxidase Complexed With
Pyrazine-2- Carboxamide At 2 A Resolution
pdb|3R5O|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With 4- Allyl-2-Methoxyphenol At 2.6 A Resolution
pdb|3TGY|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Ascorbic Acid At 2.35 A Resolution
pdb|3TUW|A Chain A, Crystal Structure Of Lactoperoxidase Complexed With
Pyrazinamide At 2.2a Resolution
pdb|3UBA|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With P- Hydroxycinnamic Acid At 2.6 A Resolution
pdb|3V6Q|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Carbon Monoxide At 2.0 A Resolution
pdb|4GM7|A Chain A, Structure Of Cinnamic Acid Bound Bovine Lactoperoxidase At
2.6a Resolution.
pdb|4GN6|A Chain A, Structure Of Paracetamol Bound Bovine Lactoperoxidase At
2.45a Resolution
Length = 595
Score = 111 bits (277), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 56/131 (42%), Positives = 84/131 (64%), Gaps = 6/131 (4%)
Query: 1 METDGLTQHLFEQVGSKVPYGLDLVSLNIQRGRDHGLPGYPKWRKYCGLSEPKTFDDLKD 60
M T L LF Q K+ +G DL ++N+QR RDHG+PGY WR +CGLS+PKT L+
Sbjct: 412 MVTSELRNKLF-QPTHKI-HGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQT 469
Query: 61 HVDDESL-KLLSKIYKSVDDVDMYTGGLSEKPLEGGMLGPTMTCLIANQFVRMKSGDRYW 119
+ ++ L K L +YK+ D++D++ GG +E +E G +GP + CL+ QF +++ GDR+W
Sbjct: 470 VLKNKILAKKLMDLYKTPDNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFW 529
Query: 120 YETSEQPQAFT 130
+E P FT
Sbjct: 530 WEN---PGVFT 537
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
Query: 149 YGLDLVSLNIQRGRDHGLPGYPRWRKYCGLSEPKTFDDLKDHVDDESL-KLLSKIYK 204
+G DL ++N+QR RDHG+PGY WR +CGLS+PKT L+ + ++ L K L +YK
Sbjct: 429 HGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDLYK 485
>pdb|3ERH|A Chain A, First Structural Evidence Of Substrate Specificity In
Mammalian Peroxidases: Crystal Structures Of Substrate
Complexes With Lactoperoxidases From Two Different
Species
pdb|3FAQ|A Chain A, Crystal Struture Of Lactoperoxidase Complex With Cyanide
Length = 595
Score = 111 bits (277), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 56/131 (42%), Positives = 84/131 (64%), Gaps = 6/131 (4%)
Query: 1 METDGLTQHLFEQVGSKVPYGLDLVSLNIQRGRDHGLPGYPKWRKYCGLSEPKTFDDLKD 60
M T L LF Q K+ +G DL ++N+QR RDHG+PGY WR +CGLS+PKT L+
Sbjct: 412 MVTSELRNKLF-QPTHKI-HGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQT 469
Query: 61 HVDDESL-KLLSKIYKSVDDVDMYTGGLSEKPLEGGMLGPTMTCLIANQFVRMKSGDRYW 119
+ ++ L K L +YK+ D++D++ GG +E +E G +GP + CL+ QF +++ GDR+W
Sbjct: 470 VLKNKILAKKLMDLYKTPDNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFW 529
Query: 120 YETSEQPQAFT 130
+E P FT
Sbjct: 530 WEN---PGVFT 537
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
Query: 149 YGLDLVSLNIQRGRDHGLPGYPRWRKYCGLSEPKTFDDLKDHVDDESL-KLLSKIYK 204
+G DL ++N+QR RDHG+PGY WR +CGLS+PKT L+ + ++ L K L +YK
Sbjct: 429 HGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDLYK 485
>pdb|2IPS|A Chain A, Crystal Structure Of A Ternary Complex Of Bovine
Lactoperoxidase With Thiocyanate And Iodide At 3.1 A
Resolution
pdb|2NQX|A Chain A, Crystal Structure Of Bovine Lactoperoxidase With Iodide
Ions At 2.9a Resolution
Length = 595
Score = 111 bits (277), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 56/131 (42%), Positives = 84/131 (64%), Gaps = 6/131 (4%)
Query: 1 METDGLTQHLFEQVGSKVPYGLDLVSLNIQRGRDHGLPGYPKWRKYCGLSEPKTFDDLKD 60
M T L LF Q K+ +G DL ++N+QR RDHG+PGY WR +CGLS+PKT L+
Sbjct: 412 MVTSELRNKLF-QPTHKI-HGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQT 469
Query: 61 HVDDESL-KLLSKIYKSVDDVDMYTGGLSEKPLEGGMLGPTMTCLIANQFVRMKSGDRYW 119
+ ++ L K L +YK+ D++D++ GG +E +E G +GP + CL+ QF +++ GDR+W
Sbjct: 470 VLKNKILAKKLMDLYKTPDNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFW 529
Query: 120 YETSEQPQAFT 130
+E P FT
Sbjct: 530 WEN---PGVFT 537
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
Query: 149 YGLDLVSLNIQRGRDHGLPGYPRWRKYCGLSEPKTFDDLKDHVDDESL-KLLSKIYK 204
+G DL ++N+QR RDHG+PGY WR +CGLS+PKT L+ + ++ L K L +YK
Sbjct: 429 HGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDLYK 485
>pdb|2GJ1|A Chain A, Crystal Structure Of Bovine Lactoperoxidase At 2.3a
Resolution
Length = 583
Score = 110 bits (276), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 56/131 (42%), Positives = 84/131 (64%), Gaps = 6/131 (4%)
Query: 1 METDGLTQHLFEQVGSKVPYGLDLVSLNIQRGRDHGLPGYPKWRKYCGLSEPKTFDDLKD 60
M T L LF Q K+ +G DL ++N+QR RDHG+PGY WR +CGLS+PKT L+
Sbjct: 400 MVTSELRNKLF-QPTHKI-HGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQT 457
Query: 61 HVDDESL-KLLSKIYKSVDDVDMYTGGLSEKPLEGGMLGPTMTCLIANQFVRMKSGDRYW 119
+ ++ L K L +YK+ D++D++ GG +E +E G +GP + CL+ QF +++ GDR+W
Sbjct: 458 VLKNKILAKKLMDLYKTPDNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFW 517
Query: 120 YETSEQPQAFT 130
+E P FT
Sbjct: 518 WEN---PGVFT 525
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
Query: 149 YGLDLVSLNIQRGRDHGLPGYPRWRKYCGLSEPKTFDDLKDHVDDESL-KLLSKIYK 204
+G DL ++N+QR RDHG+PGY WR +CGLS+PKT L+ + ++ L K L +YK
Sbjct: 417 HGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDLYK 473
>pdb|2GJM|A Chain A, Crystal Structure Of Buffalo Lactoperoxidase At 2.75a
Resolution
Length = 583
Score = 110 bits (276), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 56/131 (42%), Positives = 84/131 (64%), Gaps = 6/131 (4%)
Query: 1 METDGLTQHLFEQVGSKVPYGLDLVSLNIQRGRDHGLPGYPKWRKYCGLSEPKTFDDLKD 60
M T L LF Q K+ +G DL ++N+QR RDHG+PGY WR +CGLS+PKT L+
Sbjct: 400 MVTSELRNKLF-QPTHKI-HGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQT 457
Query: 61 HVDDESL-KLLSKIYKSVDDVDMYTGGLSEKPLEGGMLGPTMTCLIANQFVRMKSGDRYW 119
+ ++ L K L +YK+ D++D++ GG +E +E G +GP + CL+ QF +++ GDR+W
Sbjct: 458 VLKNKILAKKLMDLYKTPDNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFW 517
Query: 120 YETSEQPQAFT 130
+E P FT
Sbjct: 518 WEN---PGVFT 525
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
Query: 149 YGLDLVSLNIQRGRDHGLPGYPRWRKYCGLSEPKTFDDLKDHVDDESL-KLLSKIYK 204
+G DL ++N+QR RDHG+PGY WR +CGLS+PKT L+ + ++ L K L +YK
Sbjct: 417 HGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDLYK 473
>pdb|2Z5Z|A Chain A, Crystal Structure Of The Complex Of Buffalo
Lactoperoxidase With Fluoride Ion At 3.5a Resolution
pdb|3FNL|A Chain A, Crystal Structure Of The Complex Of Buffalo
Lactoperoxidase With Salicylhydroxamic Acid At 2.48 A
Resolution
Length = 595
Score = 110 bits (276), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 56/131 (42%), Positives = 84/131 (64%), Gaps = 6/131 (4%)
Query: 1 METDGLTQHLFEQVGSKVPYGLDLVSLNIQRGRDHGLPGYPKWRKYCGLSEPKTFDDLKD 60
M T L LF Q K+ +G DL ++N+QR RDHG+PGY WR +CGLS+PKT L+
Sbjct: 412 MVTSELRNKLF-QPTHKI-HGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQT 469
Query: 61 HVDDESL-KLLSKIYKSVDDVDMYTGGLSEKPLEGGMLGPTMTCLIANQFVRMKSGDRYW 119
+ ++ L K L +YK+ D++D++ GG +E +E G +GP + CL+ QF +++ GDR+W
Sbjct: 470 VLKNKILAKKLMDLYKTPDNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFW 529
Query: 120 YETSEQPQAFT 130
+E P FT
Sbjct: 530 WEN---PGVFT 537
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
Query: 149 YGLDLVSLNIQRGRDHGLPGYPRWRKYCGLSEPKTFDDLKDHVDDESL-KLLSKIYK 204
+G DL ++N+QR RDHG+PGY WR +CGLS+PKT L+ + ++ L K L +YK
Sbjct: 429 HGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDLYK 485
>pdb|2O86|A Chain A, Crystal Structure Of A Ternary Complex Of Buffalo
Lactoperoxidase With Nitrate And Iodide At 2.8 A
Resolution
Length = 595
Score = 110 bits (276), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 56/131 (42%), Positives = 84/131 (64%), Gaps = 6/131 (4%)
Query: 1 METDGLTQHLFEQVGSKVPYGLDLVSLNIQRGRDHGLPGYPKWRKYCGLSEPKTFDDLKD 60
M T L LF Q K+ +G DL ++N+QR RDHG+PGY WR +CGLS+PKT L+
Sbjct: 412 MVTSELRNKLF-QPTHKI-HGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQT 469
Query: 61 HVDDESL-KLLSKIYKSVDDVDMYTGGLSEKPLEGGMLGPTMTCLIANQFVRMKSGDRYW 119
+ ++ L K L +YK+ D++D++ GG +E +E G +GP + CL+ QF +++ GDR+W
Sbjct: 470 VLKNKILAKKLMDLYKTPDNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFW 529
Query: 120 YETSEQPQAFT 130
+E P FT
Sbjct: 530 WEN---PGVFT 537
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
Query: 149 YGLDLVSLNIQRGRDHGLPGYPRWRKYCGLSEPKTFDDLKDHVDDESL-KLLSKIYK 204
+G DL ++N+QR RDHG+PGY WR +CGLS+PKT L+ + ++ L K L +YK
Sbjct: 429 HGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDLYK 485
>pdb|3R5Q|A Chain A, Crystal Structure Of Sheep Lactoperoxidase In Complex With
Tetrahydrofuran At 2.7 A Resolution
Length = 595
Score = 110 bits (275), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 56/131 (42%), Positives = 84/131 (64%), Gaps = 6/131 (4%)
Query: 1 METDGLTQHLFEQVGSKVPYGLDLVSLNIQRGRDHGLPGYPKWRKYCGLSEPKTFDDLKD 60
M T L LF Q K+ +G DL ++N+QR RDHG+PGY WR +CGLS+PKT L+
Sbjct: 412 MVTSELRNKLF-QPTHKI-HGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQA 469
Query: 61 HVDDESL-KLLSKIYKSVDDVDMYTGGLSEKPLEGGMLGPTMTCLIANQFVRMKSGDRYW 119
+ ++ L K L +YK+ D++D++ GG +E +E G +GP + CL+ QF +++ GDR+W
Sbjct: 470 VLKNKILAKKLLDLYKTPDNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFW 529
Query: 120 YETSEQPQAFT 130
+E P FT
Sbjct: 530 WEN---PGVFT 537
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
Query: 149 YGLDLVSLNIQRGRDHGLPGYPRWRKYCGLSEPKTFDDLKDHVDDESL-KLLSKIYK 204
+G DL ++N+QR RDHG+PGY WR +CGLS+PKT L+ + ++ L K L +YK
Sbjct: 429 HGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQAVLKNKILAKKLLDLYK 485
>pdb|2IKC|A Chain A, Crystal Structure Of Sheep Lactoperoxidase At 3.25 A
Resolution Reveals The Binding Sites For Formate
pdb|2IKC|B Chain B, Crystal Structure Of Sheep Lactoperoxidase At 3.25 A
Resolution Reveals The Binding Sites For Formate
Length = 595
Score = 110 bits (275), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 56/131 (42%), Positives = 84/131 (64%), Gaps = 6/131 (4%)
Query: 1 METDGLTQHLFEQVGSKVPYGLDLVSLNIQRGRDHGLPGYPKWRKYCGLSEPKTFDDLKD 60
M T L LF Q K+ +G DL ++N+QR RDHG+PGY WR +CGLS+PKT L+
Sbjct: 412 MVTSELRNKLF-QPTHKI-HGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQA 469
Query: 61 HVDDESL-KLLSKIYKSVDDVDMYTGGLSEKPLEGGMLGPTMTCLIANQFVRMKSGDRYW 119
+ ++ L K L +YK+ D++D++ GG +E +E G +GP + CL+ QF +++ GDR+W
Sbjct: 470 VLKNKILAKKLLDLYKTPDNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFW 529
Query: 120 YETSEQPQAFT 130
+E P FT
Sbjct: 530 WEN---PGVFT 537
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
Query: 149 YGLDLVSLNIQRGRDHGLPGYPRWRKYCGLSEPKTFDDLKDHVDDESL-KLLSKIYK 204
+G DL ++N+QR RDHG+PGY WR +CGLS+PKT L+ + ++ L K L +YK
Sbjct: 429 HGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQAVLKNKILAKKLLDLYK 485
>pdb|3F9P|C Chain C, Crystal Structure Of Myeloperoxidase From Human Leukocytes
pdb|3F9P|D Chain D, Crystal Structure Of Myeloperoxidase From Human Leukocytes
pdb|3ZS0|C Chain C, Human Myeloperoxidase Inactivated By Tx2
pdb|3ZS0|D Chain D, Human Myeloperoxidase Inactivated By Tx2
pdb|3ZS1|C Chain C, Human Myeloperoxidase Inactivated By Tx5
pdb|3ZS1|D Chain D, Human Myeloperoxidase Inactivated By Tx5
Length = 467
Score = 108 bits (269), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 80/125 (64%), Gaps = 8/125 (6%)
Query: 1 METDGLTQHLFEQVGSKVPYGLDLVSLNIQRGRDHGLPGYPKWRKYCGLSEPKTFDDLKD 60
+ D + + LFEQV + GLDL +LN+QR RDHGLPGY WR++CGL +P+T L
Sbjct: 285 IAVDEIRERLFEQV---MRIGLDLPALNMQRSRDHGLPGYNAWRRFCGLPQPETVGQLGT 341
Query: 61 HVDDESLKLLSKI---YKSVDDVDMYTGGLSEKPLEGGMLGPTMTCLIANQFVRMKSGDR 117
+ +LKL K+ Y + +++D++ GG+SE G +GP + C+I QF +++ GDR
Sbjct: 342 VL--RNLKLARKLMEQYGTPNNIDIWMGGVSEPLKRKGRVGPLLACIIGTQFRKLRDGDR 399
Query: 118 YWYET 122
+W+E
Sbjct: 400 FWWEN 404
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 46/70 (65%), Gaps = 5/70 (7%)
Query: 135 LTQHLFEQVGSKVPYGLDLVSLNIQRGRDHGLPGYPRWRKYCGLSEPKTFDDLKDHVDDE 194
+ + LFEQV + GLDL +LN+QR RDHGLPGY WR++CGL +P+T L +
Sbjct: 290 IRERLFEQV---MRIGLDLPALNMQRSRDHGLPGYNAWRRFCGLPQPETVGQLGTVL--R 344
Query: 195 SLKLLSKIYK 204
+LKL K+ +
Sbjct: 345 NLKLARKLME 354
>pdb|1CXP|C Chain C, Cryogenic Crystal Structure Of Human Myeloperoxidase
Isoform C
pdb|1CXP|D Chain D, Cryogenic Crystal Structure Of Human Myeloperoxidase
Isoform C
pdb|1D2V|C Chain C, Crystal Structure Of Bromide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
pdb|1D2V|D Chain D, Crystal Structure Of Bromide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
pdb|1D7W|C Chain C, Crystal Structure Of Human Myeloperoxidase Isoform C
Complexed With Cyanide And Bromide At Ph 4.0
pdb|1D7W|D Chain D, Crystal Structure Of Human Myeloperoxidase Isoform C
Complexed With Cyanide And Bromide At Ph 4.0
pdb|1D5L|C Chain C, Crystal Structure Of Cyanide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
pdb|1D5L|D Chain D, Crystal Structure Of Cyanide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
pdb|1DNU|C Chain C, Structural Analyses Of Human Myeloperoxidase-Thiocyanate
Complex
pdb|1DNU|D Chain D, Structural Analyses Of Human Myeloperoxidase-Thiocyanate
Complex
pdb|1DNW|C Chain C, Human Myeloperoxidase-Cyanide-Thiocyanate Complex
pdb|1DNW|D Chain D, Human Myeloperoxidase-Cyanide-Thiocyanate Complex
pdb|4DL1|C Chain C, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|D Chain D, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|G Chain G, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|H Chain H, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|K Chain K, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|L Chain L, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|O Chain O, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|P Chain P, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
Length = 466
Score = 108 bits (269), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 80/125 (64%), Gaps = 8/125 (6%)
Query: 1 METDGLTQHLFEQVGSKVPYGLDLVSLNIQRGRDHGLPGYPKWRKYCGLSEPKTFDDLKD 60
+ D + + LFEQV + GLDL +LN+QR RDHGLPGY WR++CGL +P+T L
Sbjct: 285 IAVDEIRERLFEQV---MRIGLDLPALNMQRSRDHGLPGYNAWRRFCGLPQPETVGQLGT 341
Query: 61 HVDDESLKLLSKI---YKSVDDVDMYTGGLSEKPLEGGMLGPTMTCLIANQFVRMKSGDR 117
+ +LKL K+ Y + +++D++ GG+SE G +GP + C+I QF +++ GDR
Sbjct: 342 VL--RNLKLARKLMEQYGTPNNIDIWMGGVSEPLKRKGRVGPLLACIIGTQFRKLRDGDR 399
Query: 118 YWYET 122
+W+E
Sbjct: 400 FWWEN 404
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 46/70 (65%), Gaps = 5/70 (7%)
Query: 135 LTQHLFEQVGSKVPYGLDLVSLNIQRGRDHGLPGYPRWRKYCGLSEPKTFDDLKDHVDDE 194
+ + LFEQV + GLDL +LN+QR RDHGLPGY WR++CGL +P+T L +
Sbjct: 290 IRERLFEQV---MRIGLDLPALNMQRSRDHGLPGYNAWRRFCGLPQPETVGQLGTVL--R 344
Query: 195 SLKLLSKIYK 204
+LKL K+ +
Sbjct: 345 NLKLARKLME 354
>pdb|1MYP|C Chain C, X-Ray Crystal Structure Of Canine Myeloperoxidase At 3
Angstroms Resolution
pdb|1MYP|D Chain D, X-Ray Crystal Structure Of Canine Myeloperoxidase At 3
Angstroms Resolution
pdb|1MHL|C Chain C, Crystal Structure Of Human Myeloperoxidase Isoform C
Crystallized In Space Group P2(1) At Ph 5.5 And 20 Deg C
pdb|1MHL|D Chain D, Crystal Structure Of Human Myeloperoxidase Isoform C
Crystallized In Space Group P2(1) At Ph 5.5 And 20 Deg C
Length = 466
Score = 108 bits (269), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 80/125 (64%), Gaps = 8/125 (6%)
Query: 1 METDGLTQHLFEQVGSKVPYGLDLVSLNIQRGRDHGLPGYPKWRKYCGLSEPKTFDDLKD 60
+ D + + LFEQV + GLDL +LN+QR RDHGLPGY WR++CGL +P+T L
Sbjct: 285 IAVDEIRERLFEQV---MRIGLDLPALNMQRSRDHGLPGYNAWRRFCGLPQPETVGQLGT 341
Query: 61 HVDDESLKLLSKI---YKSVDDVDMYTGGLSEKPLEGGMLGPTMTCLIANQFVRMKSGDR 117
+ +LKL K+ Y + +++D++ GG+SE G +GP + C+I QF +++ GDR
Sbjct: 342 VL--RNLKLARKLMEQYGTPNNIDIWMGGVSEPLKRKGRVGPLLACIIGTQFRKLRDGDR 399
Query: 118 YWYET 122
+W+E
Sbjct: 400 FWWEN 404
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 46/70 (65%), Gaps = 5/70 (7%)
Query: 135 LTQHLFEQVGSKVPYGLDLVSLNIQRGRDHGLPGYPRWRKYCGLSEPKTFDDLKDHVDDE 194
+ + LFEQV + GLDL +LN+QR RDHGLPGY WR++CGL +P+T L +
Sbjct: 290 IRERLFEQV---MRIGLDLPALNMQRSRDHGLPGYNAWRRFCGLPQPETVGQLGTVL--R 344
Query: 195 SLKLLSKIYK 204
+LKL K+ +
Sbjct: 345 NLKLARKLME 354
>pdb|4HHR|A Chain A, Crystal Structure Of Fatty Acid Alpha-dioxygenase
(arabidopsis Thaliana)
pdb|4HHS|A Chain A, Crystal Structure Of Fatty Acid Alpha-dioxygenase
(arabidopsis Thaliana)
Length = 652
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 63/122 (51%), Gaps = 5/122 (4%)
Query: 15 GSKVPYGLDLVSLNIQRGRDHGLPGYPKWRKYCGLSEPKTFDDLKDHVDDESLKLLSKIY 74
G P +DL +L I R R+ +P Y ++R+ + ++DL + D+E++++L +Y
Sbjct: 482 GQARPDHVDLAALEIYRDRERSVPRYNEFRRSMFMIPITKWEDLTE--DEEAIEVLDDVY 539
Query: 75 K-SVDDVDMYTGGLSEKPLEGGMLGPTMTCLIANQFVRMKSGDRYWYETSEQPQAFTAGK 133
V+++D+ G ++EK ++G + T + R DR++ TS+ + K
Sbjct: 540 DGDVEELDLLVGLMAEKKIKGFAISETAFYIFLIMATRRLEADRFF--TSDFNETIYTKK 597
Query: 134 GL 135
GL
Sbjct: 598 GL 599
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 144 GSKVPYGLDLVSLNIQRGRDHGLPGYPRWRKYCGLSEPKTFDDLKDHVDDESLKLLSKIY 203
G P +DL +L I R R+ +P Y +R+ + ++DL + D+E++++L +Y
Sbjct: 482 GQARPDHVDLAALEIYRDRERSVPRYNEFRRSMFMIPITKWEDLTE--DEEAIEVLDDVY 539
>pdb|3TZI|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of G533v Murine Cox-2
pdb|3TZI|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of G533v Murine Cox-2
Length = 593
Score = 35.8 bits (81), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 64/155 (41%), Gaps = 18/155 (11%)
Query: 15 GSKVPYGLDLVS-LNIQRGRDHGLPGYPKWRKYCGLSEPKTFDDLKDHVDDESLKLLSKI 73
G VP + V+ +I + R+ ++RK L +F++L + E L +
Sbjct: 412 GRNVPIAVQAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEELTG--EKEMAAELKAL 469
Query: 74 YKSVDDVDMYTGGLSEKPLEGGMLGPTMTCLIANQFVRMKSGD-----RYWYETSEQPQA 128
Y +D +++Y L EKP + G TM L A +++ G+ +YW +P
Sbjct: 470 YSDIDVMELYPALLVEKPRPDAIFGETMVELGAPFSLKVLMGNPICSPQYW-----KPST 524
Query: 129 FTAGKGL----TQHLFEQVGSKVPYGLDLVSLNIQ 159
F G T + + + V G S N+Q
Sbjct: 525 FGGEVGFKIINTASIQSLICNNVK-GCPFTSFNVQ 558
>pdb|3PGH|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|4COX|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|4COX|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|4COX|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|4COX|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|5COX|A Chain A, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|B Chain B, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|C Chain C, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|D Chain D, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|6COX|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558 In I222 Space Group
pdb|6COX|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558 In I222 Space Group
pdb|1CX2|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
pdb|1CX2|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
pdb|1CX2|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
pdb|1CX2|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
Length = 587
Score = 34.7 bits (78), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 3/93 (3%)
Query: 15 GSKVPYGLDLVS-LNIQRGRDHGLPGYPKWRKYCGLSEPKTFDDLKDHVDDESLKLLSKI 73
G VP + V+ +I + R+ ++RK L +F++L + E L +
Sbjct: 406 GRNVPIAVQAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEELTG--EKEMAAELKAL 463
Query: 74 YKSVDDVDMYTGGLSEKPLEGGMLGPTMTCLIA 106
Y +D +++Y L EKP + G TM L A
Sbjct: 464 YSDIDVMELYPALLVEKPRPDAIFGETMVELGA 496
>pdb|3RR3|A Chain A, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|B Chain B, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|C Chain C, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|D Chain D, Structure Of (R)-Flurbiprofen Bound To Mcox-2
Length = 560
Score = 34.7 bits (78), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 3/93 (3%)
Query: 15 GSKVPYGLDLVS-LNIQRGRDHGLPGYPKWRKYCGLSEPKTFDDLKDHVDDESLKLLSKI 73
G VP + V+ +I + R+ ++RK L +F++L + E L +
Sbjct: 406 GRNVPIAVQAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEELTG--EKEMAAELKAL 463
Query: 74 YKSVDDVDMYTGGLSEKPLEGGMLGPTMTCLIA 106
Y +D +++Y L EKP + G TM L A
Sbjct: 464 YSDIDVMELYPALLVEKPRPDAIFGETMVELGA 496
>pdb|3QH0|A Chain A, X-Ray Crystal Structure Of Palmitic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QH0|B Chain B, X-Ray Crystal Structure Of Palmitic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QMO|A Chain A, X-Ray Crystal Structure Of Ns-398 Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QMO|B Chain B, X-Ray Crystal Structure Of Ns-398 Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|4E1G|A Chain A, X-Ray Crystal Structure Of Alpha-Linolenic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|4E1G|B Chain B, X-Ray Crystal Structure Of Alpha-Linolenic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 610
Score = 34.7 bits (78), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 3/93 (3%)
Query: 15 GSKVPYGLDLVS-LNIQRGRDHGLPGYPKWRKYCGLSEPKTFDDLKDHVDDESLKLLSKI 73
G VP + V+ +I + R+ ++RK L +F++L + E L +
Sbjct: 429 GRNVPIAVQAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEELTG--EKEMAAELKAL 486
Query: 74 YKSVDDVDMYTGGLSEKPLEGGMLGPTMTCLIA 106
Y +D +++Y L EKP + G TM L A
Sbjct: 487 YSDIDVMELYPALLVEKPRPDAIFGETMVELGA 519
>pdb|3MDL|A Chain A, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3MDL|B Chain B, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 587
Score = 34.7 bits (78), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 3/93 (3%)
Query: 15 GSKVPYGLDLVS-LNIQRGRDHGLPGYPKWRKYCGLSEPKTFDDLKDHVDDESLKLLSKI 73
G VP + V+ +I + R+ ++RK L +F++L + E L +
Sbjct: 411 GRNVPIAVQAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEELTG--EKEMAAELKAL 468
Query: 74 YKSVDDVDMYTGGLSEKPLEGGMLGPTMTCLIA 106
Y +D +++Y L EKP + G TM L A
Sbjct: 469 YSDIDVMELYPALLVEKPRPDAIFGETMVELGA 501
>pdb|3KRK|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of L531f Murine Cox-2
pdb|3KRK|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of L531f Murine Cox-2
Length = 591
Score = 34.7 bits (78), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 3/93 (3%)
Query: 15 GSKVPYGLDLVS-LNIQRGRDHGLPGYPKWRKYCGLSEPKTFDDLKDHVDDESLKLLSKI 73
G VP + V+ +I + R+ ++RK L +F++L + E L +
Sbjct: 410 GRNVPIAVQAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEELTG--EKEMAAELKAL 467
Query: 74 YKSVDDVDMYTGGLSEKPLEGGMLGPTMTCLIA 106
Y +D +++Y L EKP + G TM L A
Sbjct: 468 YSDIDVMELYPALLVEKPRPDAIFGETMVELGA 500
>pdb|3NT1|A Chain A, High Resolution Structure Of Naproxen:cox-2 Complex.
pdb|3NT1|B Chain B, High Resolution Structure Of Naproxen:cox-2 Complex.
pdb|3NTB|A Chain A, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3NTB|B Chain B, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3NTB|C Chain C, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3NTB|D Chain D, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3LN0|A Chain A, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|B Chain B, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|C Chain C, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|D Chain D, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN1|A Chain A, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|B Chain B, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|C Chain C, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|D Chain D, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3MQE|A Chain A, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|B Chain B, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|C Chain C, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|D Chain D, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3Q7D|A Chain A, Structure Of (R)-Naproxen Bound To Mcox-2.
pdb|3Q7D|B Chain B, Structure Of (R)-Naproxen Bound To Mcox-2
Length = 587
Score = 34.7 bits (78), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 3/93 (3%)
Query: 15 GSKVPYGLDLVS-LNIQRGRDHGLPGYPKWRKYCGLSEPKTFDDLKDHVDDESLKLLSKI 73
G VP + V+ +I + R+ ++RK L +F++L + E L +
Sbjct: 406 GRNVPIAVQAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEELTG--EKEMAAELKAL 463
Query: 74 YKSVDDVDMYTGGLSEKPLEGGMLGPTMTCLIA 106
Y +D +++Y L EKP + G TM L A
Sbjct: 464 YSDIDVMELYPALLVEKPRPDAIFGETMVELGA 496
>pdb|1PXX|A Chain A, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|B Chain B, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|C Chain C, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|D Chain D, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|4FM5|A Chain A, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
pdb|4FM5|B Chain B, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
pdb|4FM5|C Chain C, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
pdb|4FM5|D Chain D, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
Length = 604
Score = 34.7 bits (78), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 3/93 (3%)
Query: 15 GSKVPYGLDLVS-LNIQRGRDHGLPGYPKWRKYCGLSEPKTFDDLKDHVDDESLKLLSKI 73
G VP + V+ +I + R+ ++RK L +F++L + E L +
Sbjct: 423 GRNVPIAVQAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEELTG--EKEMAAELKAL 480
Query: 74 YKSVDDVDMYTGGLSEKPLEGGMLGPTMTCLIA 106
Y +D +++Y L EKP + G TM L A
Sbjct: 481 YSDIDVMELYPALLVEKPRPDAIFGETMVELGA 513
>pdb|1DDX|A Chain A, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|1DDX|B Chain B, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|1DDX|C Chain C, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|1DDX|D Chain D, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|3NTG|A Chain A, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
pdb|3NTG|B Chain B, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
pdb|3NTG|C Chain C, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
pdb|3NTG|D Chain D, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
Length = 552
Score = 34.7 bits (78), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 3/93 (3%)
Query: 15 GSKVPYGLDLVS-LNIQRGRDHGLPGYPKWRKYCGLSEPKTFDDLKDHVDDESLKLLSKI 73
G VP + V+ +I + R+ ++RK L +F++L + E L +
Sbjct: 406 GRNVPIAVQAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEELTG--EKEMAAELKAL 463
Query: 74 YKSVDDVDMYTGGLSEKPLEGGMLGPTMTCLIA 106
Y +D +++Y L EKP + G TM L A
Sbjct: 464 YSDIDVMELYPALLVEKPRPDAIFGETMVELGA 496
>pdb|3HS5|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS5|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS6|A Chain A, X-Ray Crystal Structure Of Eicosapentaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS6|B Chain B, X-Ray Crystal Structure Of Eicosapentaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS7|A Chain A, X-Ray Crystal Structure Of Docosahexaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS7|B Chain B, X-Ray Crystal Structure Of Docosahexaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 591
Score = 34.7 bits (78), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 3/93 (3%)
Query: 15 GSKVPYGLDLVS-LNIQRGRDHGLPGYPKWRKYCGLSEPKTFDDLKDHVDDESLKLLSKI 73
G VP + V+ +I + R+ ++RK L +F++L + E L +
Sbjct: 410 GRNVPIAVQAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEELTG--EKEMAAELKAL 467
Query: 74 YKSVDDVDMYTGGLSEKPLEGGMLGPTMTCLIA 106
Y +D +++Y L EKP + G TM L A
Sbjct: 468 YSDIDVMELYPALLVEKPRPDAIFGETMVELGA 500
>pdb|1CVU|A Chain A, Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1CVU|B Chain B, Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Active Site Of Cox-2
Length = 552
Score = 34.7 bits (78), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 3/93 (3%)
Query: 15 GSKVPYGLDLVS-LNIQRGRDHGLPGYPKWRKYCGLSEPKTFDDLKDHVDDESLKLLSKI 73
G VP + V+ +I + R+ ++RK L +F++L + E L +
Sbjct: 406 GRNVPIAVQAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEELTG--EKEMAAELKAL 463
Query: 74 YKSVDDVDMYTGGLSEKPLEGGMLGPTMTCLIA 106
Y +D +++Y L EKP + G TM L A
Sbjct: 464 YSDIDVMELYPALLVEKPRPDAIFGETMVELGA 496
>pdb|3OLT|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLT|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLU|A Chain A, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLU|B Chain B, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of R513h Murine Cox-2
Length = 592
Score = 34.7 bits (78), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 3/93 (3%)
Query: 15 GSKVPYGLDLVS-LNIQRGRDHGLPGYPKWRKYCGLSEPKTFDDLKDHVDDESLKLLSKI 73
G VP + V+ +I + R+ ++RK L +F++L + E L +
Sbjct: 411 GRNVPIAVQAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEELTG--EKEMAAELKAL 468
Query: 74 YKSVDDVDMYTGGLSEKPLEGGMLGPTMTCLIA 106
Y +D +++Y L EKP + G TM L A
Sbjct: 469 YSDIDVMELYPALLVEKPHPDAIFGETMVELGA 501
>pdb|3J02|A Chain A, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|B Chain B, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|C Chain C, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|D Chain D, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|E Chain E, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|F Chain F, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|G Chain G, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|H Chain H, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|I Chain I, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|J Chain J, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|K Chain K, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|L Chain L, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|M Chain M, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|N Chain N, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|O Chain O, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|P Chain P, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
Length = 491
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 111 RMKSGDRYWY-ETSEQPQAFTA-GKGLTQHLFEQVGSKVPYGLDLVSLNIQRGR 162
R SGD + E + P+A T +G T+H+ E+V V + +V I+ GR
Sbjct: 318 RKISGDSMIFVEECKHPKAVTMLIRGTTEHVIEEVARAVDAAVGVVGCTIEDGR 371
>pdb|3F6T|A Chain A, Crystal Structure Of Aspartate Aminotransferase (E.C.
2.6.1.1) (Yp_194538.1) From Lactobacillus Acidophilus
Ncfm At 2.15 A Resolution
pdb|3F6T|B Chain B, Crystal Structure Of Aspartate Aminotransferase (E.C.
2.6.1.1) (Yp_194538.1) From Lactobacillus Acidophilus
Ncfm At 2.15 A Resolution
Length = 533
Score = 30.0 bits (66), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
Query: 11 FEQVGSKVPYGLDLVSLNIQRGRDHGLPGYPKWR-KYCGLSEPKTFDDLKDHVDDESLKL 69
F+ + S VPY LV L G WR L+E FDD H+D L+
Sbjct: 294 FKSIYSVVPYNTXLVY------SYSXLFGCTGWRLGVIALNEKNVFDDNIAHLDKVELRQ 347
Query: 70 LSKIYKSV 77
L K Y SV
Sbjct: 348 LHKRYSSV 355
>pdb|1YVI|A Chain A, X-Ray Structure Of Putative Histidine-Containing
Phosphotransfer Protein From Rice, Ak104879
pdb|1YVI|B Chain B, X-Ray Structure Of Putative Histidine-Containing
Phosphotransfer Protein From Rice, Ak104879
pdb|2Q4F|A Chain A, Ensemble Refinement Of The Crystal Structure Of Putative
Histidine- Containing Phosphotransfer Protein From Rice,
Ak104879
pdb|2Q4F|B Chain B, Ensemble Refinement Of The Crystal Structure Of Putative
Histidine- Containing Phosphotransfer Protein From Rice,
Ak104879
Length = 149
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 33/82 (40%), Gaps = 9/82 (10%)
Query: 36 GLPGYPKWRKYCGLSEPKT-FDDLKDHVDDESLKLLSKIYKSVDDVDMYTGGLSEKPLEG 94
G PG+ +SE T F D D + +E LL + + D VD Y L
Sbjct: 38 GTPGF--------VSEVVTLFCDDADRIINEIATLLEQPVVNFDKVDAYVHQLKGSSASV 89
Query: 95 GMLGPTMTCLIANQFVRMKSGD 116
G TC+ QF + KS D
Sbjct: 90 GAQKVKFTCMQFRQFCQDKSRD 111
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.139 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,137,552
Number of Sequences: 62578
Number of extensions: 314698
Number of successful extensions: 710
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 662
Number of HSP's gapped (non-prelim): 51
length of query: 204
length of database: 14,973,337
effective HSP length: 94
effective length of query: 110
effective length of database: 9,091,005
effective search space: 1000010550
effective search space used: 1000010550
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)